Metagenome / Metatranscriptome Family F062075

Overview

Basic Information

• Family ID: F062075
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 131
• Average Sequence Length: 41 residues
• Representative Sequence: LYTDSNVVDGSSYCYATTAVNTSNEESGYSNIVSNVQIPAP
• Number of Associated Samples: 107
• Number of Associated Scaffolds: 131

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 2.29 %
• % of genes near scaffold ends (potentially truncated): 93.89 %
• % of genes from short scaffolds (< 2000 bps): 81.68 %
• Associated GOLD sequencing projects: 99
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.19

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (64.122 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (10.687 % of family members)
• Environment Ontology (ENVO): Unclassified (28.244 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (60.305 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Fibrous
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 0.00%
  β-sheet: 18.84%
  Coil/Unstructured: 81.16%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 131 Family Scaffolds
PF15780	ASH	12.21
PF13439	Glyco_transf_4	1.53
PF01850	PIN	1.53
PF04616	Glyco_hydro_43	1.53
PF13618	Gluconate_2-dh3	1.53
PF00723	Glyco_hydro_15	1.53
PF01261	AP_endonuc_2	0.76
PF00085	Thioredoxin	0.76
PF07589	PEP-CTERM	0.76
PF07676	PD40	0.76

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 131 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.05
COG3387	Glucoamylase (glucan-1,4-alpha-glucosidase), GH15 family	Carbohydrate transport and metabolism [G]	1.53
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.76
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	0.76
COG4118	Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressor	Defense mechanisms [V]	0.76
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.76
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.76
COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	Defense mechanisms [V]	0.76
COG2152	Predicted glycosyl hydrolase, GH43/DUF377 family	Carbohydrate transport and metabolism [G]	0.76
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.76

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	64.12 %
Unclassified	root	N/A	35.88 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	64.12 %
Unclassified	root	N/A	35.88 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	64.12 %
Unclassified	root	N/A	35.88 %

Level 4

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	38.93 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.76 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.05 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.76 %
Unclassified	root	N/A	35.88 %

Level 5

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	5.34 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.76 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.76 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	1.53 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.76 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.76 %
Unclassified	root	N/A	35.88 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	27.48 %

Level 6

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	27.48 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	5.34 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	0.76 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.76 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.53 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.76 %
Unclassified	root	N/A	35.88 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.76 %

Level 7

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	27.48 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5.34 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	0.76 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.76 %
Desulfuromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales	1.53 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.76 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.76 %
Unclassified	root	N/A	35.88 %

Level 8

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	27.48 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	0.76 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.76 %
Candidatus Sulfotelmatobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter	2.29 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.76 %
Geobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae	1.53 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.76 %
Unclassified	root	N/A	35.88 %

Level 9

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	27.48 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	0.76 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.76 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	1.53 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.76 %
Geobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter	0.76 %
Geopsychrobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geopsychrobacter	0.76 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.76 %
Unclassified	root	N/A	35.88 %
unclassified Candidatus Sulfotelmatobacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter	0.76 %

Level 10

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	27.48 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	0.76 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.76 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	1.53 %
Candidatus Sulfotelmatobacter sp. SbA7	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	0.76 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.76 %
Geopsychrobacter electrodiphilus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geopsychrobacter → Geopsychrobacter electrodiphilus	0.76 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.76 %
Unclassified	root	N/A	35.88 %
unclassified Geobacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter → unclassified Geobacter	0.76 %

Level 11

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	27.48 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	0.76 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.76 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	1.53 %
Candidatus Sulfotelmatobacter sp. SbA7	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	0.76 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.76 %
Geobacter sp. M18	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter → unclassified Geobacter → Geobacter sp. M18	0.76 %
Geopsychrobacter electrodiphilus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geopsychrobacter → Geopsychrobacter electrodiphilus	0.76 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.76 %
Unclassified	root	N/A	35.88 %

Associated Scaffolds

Scaffold	Taxonomy	Length
2170459024|GZTSFBX01EH6NQ	All Organisms → cellular organisms → Bacteria	509
3300000650|AP72_2010_repI_A1DRAFT_1021180	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	563
3300000789|JGI1027J11758_12679346	Not Available	696
3300000955|JGI1027J12803_103169064	Not Available	513
3300001593|JGI12635J15846_10447528	Not Available	770
3300002245|JGIcombinedJ26739_101216889	All Organisms → cellular organisms → Bacteria	642
3300004152|Ga0062386_100572296	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	922
3300004152|Ga0062386_101858547	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	502
3300004479|Ga0062595_100005850	All Organisms → cellular organisms → Bacteria	3585
3300005186|Ga0066676_10715168	All Organisms → cellular organisms → Bacteria	682

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.42%
Host-Associated	Host-Associated	4.58%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	20.61%
Plants	Host-Associated → Plants	4.58%
Terrestrial	Environmental → Terrestrial	74.81%

Category

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	12.98%
Peat	Environmental → Terrestrial → Peat	1.53%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.76%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.05%
Roots	Host-Associated → Plants → Roots	0.76%
Sediment	Environmental → Aquatic → Sediment	5.34%
Soil	Environmental → Terrestrial → Soil	73.28%
Thermal Springs	Environmental → Aquatic → Thermal Springs	2.29%

Type

Habitat	Taxonomy	Distribution
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	2.29%
Loam	Environmental → Terrestrial → Soil → Loam	12.21%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.76%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.53%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	44.27%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.34%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.53%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.53%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.76%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	16.79%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	12.98%

Subtype

Habitat	Taxonomy	Distribution
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	1.53%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.29%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.82%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	6.11%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	12.98%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.40%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.11%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.53%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	4.58%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment	0.76%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.76%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.90%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	15.27%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.34%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.29%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.53%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.53%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.53%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.76%

Habitat

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.53%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.53%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.76%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.76%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.29%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.76%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.29%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.82%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.76%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	4.58%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.76%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.76%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.05%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	1.53%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.76%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.76%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	3.05%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	2.29%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	1.53%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	4.58%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	1.53%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.53%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	1.53%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.76%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment	0.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.16%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.34%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	5.34%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.53%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.76%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.76%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	3.82%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	10.69%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.76%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	6.87%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.53%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	5.34%

Associated Samples

Taxon OID	Sample Name	Habitat Type
2170459024	Grass soil microbial communities from Rothamsted Park, UK - FD1 (NaCl 300g/L 5ml)	Environmental
3300000650	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A1	Environmental
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FD1_06993840	2170459024	Grass Soil	TGTLYTDTTVANGNNYCYATTAVDSSSRESSYSNIVSNVKVPAL
AP72_2010_repI_A1DRAFT_10211802	3300000650	Forest Soil	TDSSVKNGSSYCYATTAVDTSNDESGYSNIVSNVQIPAQ*
JGI1027J11758_126793462	3300000789	Soil	LNTGTLYTDSSVANGSAYCFATTAVDTSNLESAYSNIVSNVKIPTQ*
JGI1027J12803_1031690642	3300000955	Soil	YTDTTVTNGNDYCYATTAVDSSSQESTYSNIVSNVQVPAN*
JGI12635J15846_104475282	3300001593	Forest Soil	AVVDGATYCYATTAVNTSNEESGYSNEVSNVQVPAP*
JGIcombinedJ26739_1012168893	3300002245	Forest Soil	YTDSVVTDGTSYCYATTAVNSSNQESSYSNIASNVQIPAP*
Ga0062386_1005722961	3300004152	Bog Forest Soil	LYVDANVADGTKYCYATTAVNTSSQESGYSNVVSNVQIPPP*
Ga0062386_1018585472	3300004152	Bog Forest Soil	ADRQVVDGTSYCYATAAVNSSNEQSDYSNIVSDVQVPAS*
Ga0062595_1000058502	3300004479	Soil	VLTTTTLYTDSNVVDGKSYCYAATAVNSSSQESGYSNIASNVQIPAP*
Ga0066676_107151682	3300005186	Soil	SVLTTTTLYTDSNVVDGKSYCYAATAVNSSSQESGYSNVASNVQIPAP*
Ga0073909_101632613	3300005526	Surface Soil	DTTVANGNNYCYATTAVDSSSQESTYSNIVSNVQVPAN*
Ga0070730_109389711	3300005537	Surface Soil	GTLYTDAAVTDGTSYCYAATAVNTSNAESGYSNIVSNIQIPAP*
Ga0070732_106728032	3300005542	Surface Soil	VDGTSYCYASTAVNTSNEESGYSNIVSNVQIPAP*
Ga0066703_102310541	3300005568	Soil	YSDFSVIDGTNYCYATTAVNSSNEESGYSNIVSDVRIPAP*
Ga0066702_102373413	3300005575	Soil	YSDNTVANATTYCYATTAVDTTNAESGDSNIVSNVAIP*
Ga0070763_109003422	3300005610	Soil	GLLYTDSNVVDGTSYCYAATAVNTSQEESSYSNIASNVQIPAP*
Ga0066903_1056714971	3300005764	Tropical Forest Soil	VTDGTAYCYAATAVNASNEESGYSNIVTDLQIPPP*
Ga0075288_10087672	3300005874	Rice Paddy Soil	FKINSVPITSTSYTDSEVGSGAAYCYATTAISTSGAESGYSNIVSSVQIPAS*
Ga0070766_110514761	3300005921	Soil	SSVTDGTNYCYATTAVNSSSEESGYSNIVSDVQIPPP*
Ga0075029_1000010418	3300006052	Watersheds	VVLDGTSYCYITNAVNSSNEESGCSNIAYNVQIPAP*
Ga0075017_1015767451	3300006059	Watersheds	TLYTDSVVVNGTSYCYATTAVDSSNQESGYSNIVSNVQIPAP*
Ga0075019_107407501	3300006086	Watersheds	GTLYTDSSVKNATSYCYATTAVDTSNVESGYSNIVSNVQIPVQ*
Ga0075030_1014915621	3300006162	Watersheds	NILDTLTTYTDSAVTDGTNYCYATTAVNSSSEESGYSNIVSDVQIPPP*
Ga0075014_1000455881	3300006174	Watersheds	NTSTLYTDSVVVDGTSYCYATTAVNSSNEESGYSNIVSNVQIPAP*
Ga0070765_1000212235	3300006176	Soil	SDSTVVDGASYCYAATAVNTSNEESGYSNIVSNIQIPPA*
Ga0070765_1010848823	3300006176	Soil	MNGSTLITLTTYSDSSVTDGTHYCYATTAVNSSSEESGYSNIVSDVQIPPP*
Ga0097621_1007869631	3300006237	Miscanthus Rhizosphere	YTDSSVANGKSYCYASTAVNTSNEESGYSNIVSNVQIPIS*
Ga0079222_122804962	3300006755	Agricultural Soil	TTTLYTDSNVVDGKSYCYAATAVNSSSQESGYSNIASNVQIPAQ*
Ga0075425_1031318221	3300006854	Populus Rhizosphere	TDSSVLDGTSYCFAVTAVDTSNEESTYSNVVANVQVP*
Ga0073928_112167051	3300006893	Iron-Sulfur Acid Spring	TTYSDSSVTDGTHYCYATTAVNSSSEESGYSNIVSDVQIPPP*
Ga0079219_110594071	3300006954	Agricultural Soil	VVDGKSYCYAATAVNSSSQESGYSNIASNVQIPAQ*
Ga0075435_1010316141	3300007076	Populus Rhizosphere	LYTDSNVVNGKSYCYATTAVNTSNEESSYSNIVSNVQIPLQ*
Ga0116137_10823213	3300009549	Peatland	PVTDGTNYCYATTAVNSSNEESGYSNIVSDVQIPAP*
Ga0116101_11991142	3300009759	Peatland	YTDSAVVDSATYCYATTAVNTSNEESAYSNVVSNVQVPAP*
Ga0116219_100087009	3300009824	Peatlands Soil	VDGTAYCYATTAVNSSNEESGYSNIVSNLQIPPP*
Ga0116219_108090672	3300009824	Peatlands Soil	YSDSSVTDGTKYCYATTAVNSSNEESGYSNIVSDVQIPPP*
Ga0126373_105369663	3300010048	Tropical Forest Soil	DSNVADGTSYCYATTAVNTSNEESGYSNIVSNVLVPVL*
Ga0126373_117611941	3300010048	Tropical Forest Soil	SSLIASTVYTDSVVVDGKSYCYATTAVNSSNEESGYSNIASNVQVPAP*
Ga0126373_127353403	3300010048	Tropical Forest Soil	TVYTDSKVTDGTAYCYAATAVNTSNEESGYSNIVSDLQIPPP*
Ga0074045_100849775	3300010341	Bog Forest Soil	LNTSMVYDDSLVVDGASYCYATTAVNSSNEESAYSNIVSDIQVPAP*
Ga0126370_124895621	3300010358	Tropical Forest Soil	MPIASTLYVDSEVKDGASYCYATTAIDTSDQESGYSNIVVDIQIPAS*
Ga0126378_106288722	3300010361	Tropical Forest Soil	SNVTDGTAYCYAATAVNASNEESGYSNIVSNLPIPPP*
Ga0126378_114185382	3300010361	Tropical Forest Soil	VYTDSVVVDGRSYCYATTAVNSSNEESSYPTIASDVQVPAP*
Ga0126379_101877791	3300010366	Tropical Forest Soil	VVDGKSYCYATTAVDSSGQESSYSNIASNVQIPAP*
Ga0126379_117196932	3300010366	Tropical Forest Soil	GTIYTDLSVVNGTSYCYTTTAVDSSNEESVYSNVVSNVQIP*
Ga0126381_1012346712	3300010376	Tropical Forest Soil	LYTDFAVTDGTSYCYATTAVNSSSEESNYSNIVFDVQIPLP*
Ga0126381_1013575671	3300010376	Tropical Forest Soil	MGTLYTDLSVTNGTSYCYASTAVNTSNEESVYSNVVSDIQV
Ga0126381_1023667492	3300010376	Tropical Forest Soil	LNPSTVYTDSNVTDGTAYCYAATAVNASNEESGYSNIVTDLQIPPP*
Ga0126381_1039995091	3300010376	Tropical Forest Soil	NVTDGTAYCYAATAVNASNEESGYSNIVSDLQIPPP*
Ga0136449_1014161443	3300010379	Peatlands Soil	LYMDSAVVDGATYCYATTAVNTSNAESGYSNVVSNVQVPAP*
Ga0126383_100871474	3300010398	Tropical Forest Soil	ANGNNYCYATTAVNTSNEESGYSNIVPNVQVPVL*
Ga0126383_106142601	3300010398	Tropical Forest Soil	LLNTSPTFTDSNVVDGTDYCYAATAVNTSNQESGYSNIVSDVQIPAP*
Ga0137776_13528212	3300010937	Sediment	DTLTTYTDSSVVDGTNYCYATTAVNSSNEESGYSNVVSDVQIPPP*
Ga0137381_113568922	3300012207	Vadose Zone Soil	TVTTYSDFSVIDGTNYCYAITAVNSSNEESGYSNIVSDVRIPAP*
Ga0137390_107149282	3300012363	Vadose Zone Soil	SSVVDGTNYCYATTAVNSSDEESAYSNIVSDVQIPAP*
Ga0164302_118900442	3300012961	Soil	AVVDGTNYCYAATAVDSSNAESSYSNIVSNVQIPAP*
Ga0181531_105764682	3300014169	Bog	SDGSVTDGTNYCYATTAVNSSNEESGYSNIVSNVQIPAP*
Ga0182024_103675382	3300014501	Permafrost	ITLTTYSDSSVTDGTNYCYATTAVNSSSEESGYSNVVSDVQIPPP*
Ga0182024_118131211	3300014501	Permafrost	VADGTNYCYATTAVNSSNEESGYSNIVTDVHIPAP*
Ga0132258_116799431	3300015371	Arabidopsis Rhizosphere	VKNGSSYCFATTAVDTSNVESGYSNIVSNVQIPAQ*
Ga0187854_101948551	3300017938	Peatland	GSTLDTVTTYSDSSVTDGANYCYATTAVNSSNEESGYSNVVSDVQIPSP
Ga0187817_104842562	3300017955	Freshwater Sediment	VVDGKAYCYASTAVNTSNEESTYSNIVSNVQIPAP
Ga0187779_100199644	3300017959	Tropical Peatland	YSDLVVTDGTSYCYATTAVNTSQEESGYSNIVSNVQIPAP
Ga0187781_100000271	3300017972	Tropical Peatland	TDNSVTDGSSYCYAATAVNASEEESGYSNIVSNVQIPAP
Ga0187781_109533531	3300017972	Tropical Peatland	ALNTSTVYADNTVVDGTSYCYATTAVNSSEEESGYSNIVSDVQVPAP
Ga0187782_101711641	3300017975	Tropical Peatland	TAYTDSNVTDGTAYCYAATAVNTSNEESGYSNIVSDVQIPAP
Ga0187782_110999832	3300017975	Tropical Peatland	GTAYTDSNVTDGTPYCYASTAVNTSNEESGYSNIVSDVQIPAP
Ga0187816_100285331	3300017995	Freshwater Sediment	SKINSALNATTSYTDSTVATGASYCYAATAVNTSDEESGYSNIVSDFLIP
Ga0187816_104354382	3300017995	Freshwater Sediment	GYTDSVVVDGTSYCYTTTAVNSSNQESAYSNIVSNVQIPAP
Ga0187816_105059241	3300017995	Freshwater Sediment	VTDGTNYCYATTAVNSSNEESGYSNIVSDVQIPPP
Ga0187804_102541161	3300018006	Freshwater Sediment	MDGTSCCYTTTAVNFSNKESGYANIVSNAQIPAPQS
Ga0187804_104601902	3300018006	Freshwater Sediment	VYTDSNVTDGTAYCYAATAVNTSNEESGYSNIVSDVQIPPP
Ga0187871_106385191	3300018042	Peatland	STVVDGASYCYAATAVNTSNEESGYSNIVSNIQIPPA
Ga0187859_101956881	3300018047	Peatland	QYADSGVTGGTSYCYATTAVNASNQESGYSNIVSDLQIPSP
Ga0187858_103897251	3300018057	Peatland	VTDGTSYCYATTAVNSSNEESGYSNVASNVQIPAP
Ga0187784_100770776	3300018062	Tropical Peatland	PSLNAGTAYTDSNVTDGTAYCYAATAVNTSNEESGYSNIVSDVQIPAP
Ga0187772_100481771	3300018085	Tropical Peatland	NVTDGTAYCYAATAVNTTNEESGFSNIVSDVQIPAP
Ga0187769_105947332	3300018086	Tropical Peatland	NTGTLYTDSEVVDGTSYCYAATTVNSSNEESGYSNIVSNVQIPAS
Ga0187770_117267802	3300018090	Tropical Peatland	STAYTDSAVAAGTSYCYATTAVNSSNEESAYSNIVINVAIPSS
Ga0066667_123500021	3300018433	Grasslands Soil	TDSSVVNGTSYCYASTAVNSSNEESSYSNIVSNVQIPTF
Ga0210407_100481861	3300020579	Soil	TLTTYADSSVADGTNYCYATTAVDSSKVESGYSNIVSDVQIPPP
Ga0210407_110046241	3300020579	Soil	NTGTLYTDSAVIDGATYCYATTAVNTSKEESGYSNVVSKVQVPAP
Ga0210399_102662042	3300020581	Soil	SSCGAYRKINGATLVSAMTYTDSAVTDGANYCYATTAVDSSNNEESGYSNVVSDVQIPPP
Ga0210405_101105471	3300021171	Soil	TDSAVVDGAMYCYATTAINTSNEESGYSNVVSNVQVPAP
Ga0210393_113227331	3300021401	Soil	LNTGTLFTDSVVADGSNYCYATTAVDSSNRESADSNIVLNVQIPMN
Ga0210397_116200322	3300021403	Soil	TVVDGASYCYAATAVNTSNEESGYSNIVSNIQIPPA
Ga0210386_100267301	3300021406	Soil	VVDGANYCYATTAVNTSNEESGYSNIASNVQVPAP
Ga0210386_102379001	3300021406	Soil	QLNTGLLYTDSNVVDGTSYCYAATAVNTSQEESSYSNIASNVQIPAP
Ga0210390_115938852	3300021474	Soil	PLLNTGTLFTDSAVVDGATYCYATTAVNTSNEESGYSNVVSNVQVPAP
Ga0210392_110280921	3300021475	Soil	LNTGTLYTDPAVVDGATYCYATTAVNTSNEESAYSNVVSNVQVPAP
Ga0210398_107258131	3300021477	Soil	WSDSSVTDGTNYCYATTAVNSSSEESGYSNIVSDVQIPPP
Ga0210410_112696371	3300021479	Soil	SLLNTGTLYTDSAVVDGATYCYATTAVNTSNEESGYSNVVSNVQVPAP
Ga0209171_101480711	3300025320	Iron-Sulfur Acid Spring	DSAVVDGATYCYATTAVNTSNEESGYSNVVSNVQVPAP
Ga0208457_10809761	3300025812	Peatland	DPSVTDGTNYCYATTAVNSTNEESGYSNIVSDVQIPAP
Ga0207692_102377402	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	AELVPGTLYTDTGTSDGMSYCYATTAVNTSAEESGYSNIVSDIRIPPP
Ga0207693_100509751	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	GSLDVNTVYTDSNIADGSSYCYATTAVDSSNQESSPSNIVSNVQVPAQ
Ga0207664_101426781	3300025929	Agricultural Soil	TDSSVANGKSYCYASTAVNTSNEESGYSNIVSNVQIPIS
Ga0207664_106897341	3300025929	Agricultural Soil	PTATYTDSEVTNGASYCYAATAVNVSKEESGYSNIVSNVQIPPN
Ga0207665_114378631	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	DAAVTDGSSYCYAATAVNTSNAESGYSNIVSNIQIPAP
Ga0209470_12670951	3300026324	Soil	SVLTTTTLYTDSNVVDGKSYCYAATAVNSSSQESGYSNVASNVQIPAP
Ga0209806_12853901	3300026529	Soil	TTYSDFSVIDGTNYCYATTAVNSSNEESGYSNIVSDVRIPAP
Ga0209773_102202901	3300027829	Bog Forest Soil	YTLNASTLYTDSEVTDGASYCYAATTVNTRNEESGYSNIAIDVQIPPP
Ga0209580_101522941	3300027842	Surface Soil	AYTDSLVTDGTNYCYATTAVDSSNVESGYSNIVINVQIPPP
Ga0209517_100063911	3300027854	Peatlands Soil	SVVVDGTSYCYATTAVNSSSQESGYSNIVSNVQIPPP
Ga0209166_105429271	3300027857	Surface Soil	LYTDAAVTDGTSYCYAATAVNTSNAESGYSNIVSNIQIPAP
Ga0209169_102576302	3300027879	Soil	DSGVTDGTSYCYATTAVDSNNLESAYSNIVSNLQIPAP
Ga0209624_103492241	3300027895	Forest Soil	AVVDRATYCYATTAVNTTNEESGYSNVVSNVQVPAP
Ga0209415_100638391	3300027905	Peatlands Soil	SVVVDGAKYCYDTTAVNTSSEESGYSNVVSNVQVPAP
Ga0209006_100519544	3300027908	Forest Soil	MNGSALITLTTYSDSSVTDGTNYCYATTAVNSSSEESGYSNIVSDVQIPPP
Ga0209006_100653303	3300027908	Forest Soil	DTATTYSDSSVIDGTNYCYATTAVNSSNEESGFSNVVSDVQIPAP
Ga0209698_100061388	3300027911	Watersheds	VVLDGTSYCYITNAVNSSNEESGCSNIAYNVQIPAP
Ga0209698_103023262	3300027911	Watersheds	DSGVVDGTAYCYASTAVNTSNEESGYSNIVSNIQIPPP
Ga0265357_10397942	3300028023	Rhizosphere	TYTDSSVADGTNYCYATTAVDSSKAESGYSNIVSDVQIPPP
Ga0302225_104125431	3300028780	Palsa	GAILEVATEYNDLSVTYGTNYCYATTAVNSSNEESGYSNIVSDVQIPPP
Ga0265338_101148442	3300028800	Rhizosphere	VVDGASYCYASTAVNTSNEESGYSNIVSNVQIPTS
Ga0310039_100928412	3300030706	Peatlands Soil	TDSGVINSTSYCYATTAVDSTNEESGYSNIVSNIQIPVS
Ga0265746_10333752	3300030815	Soil	TAYVDSSVADHMNYCYATTAVNSSNEESGYSNIVANVQIP
Ga0307474_101330501	3300031718	Hardwood Forest Soil	DSVVIDGTSYCYATTAVNTDNGESGYSNIVSNVQIPAP
Ga0307478_100485254	3300031823	Hardwood Forest Soil	VVDGATYCYATTAVNTSNEESAYSNVVSNVQVPAP
Ga0307470_109342911	3300032174	Hardwood Forest Soil	LLDTSTLYTDSSVTNSSVYCYATTAVDTSNVESGYSNVVSNVQIPTQ
Ga0307471_1022332111	3300032180	Hardwood Forest Soil	ALDRVTTYSDFSVIDGTNYCYATTAVNSSNEESGYSNIVSDVRIPAP
Ga0335085_109819911	3300032770	Soil	LVVNGTSYCYATTAVDSSNQESGYSNIVSNVQIPIQ
Ga0335079_110647101	3300032783	Soil	VVTDGDAYCYAATAVNSSNEESGYSNIVSDVQIPPP
Ga0335078_103270121	3300032805	Soil	LYTDSNVVDGSSYCYATTAVNTSNEESGYSNIVSNVQIPAP
Ga0335081_116683581	3300032892	Soil	DSTVANGSSYCYYATAVNTSSQESGASNIATNVQIP
Ga0335072_103557041	3300032898	Soil	DYTDSVVTDGTSYCYYATAVNSSNQESAPSNTVPNVQIPAP
Ga0335072_107084411	3300032898	Soil	DSTVANSTNYCYAATAVNTSNEESGYSNIVSNVQIP
Ga0335083_102028181	3300032954	Soil	IVVDGTSYCYAATAVNSSNEESSYSNIVSNLQIPPP
Ga0334790_055308_1_144	3300033887	Soil	MLDTLTTYTDSAVTDGTNYCYATTAVNSSNEESGYSNIVTDVQIPPP
Ga0314861_0103283_1313_1450	3300033977	Peatland	NTSTLYTDSSVTDGTSYCYAATTVNSSQEESGYSNIVSDVQIPPP
Ga0314861_0285067_630_749	3300033977	Peatland	TDSAVTDGDAYCYAATAVNSSDEESGYSNIVSDVQIPAP