Metagenome / Metatranscriptome Family F062038

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F062038
Family Type	Metagenome / Metatranscriptome
Number of Sequences	131
Average Sequence Length	48 residues
Representative Sequence	MGTDPIIASQSDSHRYEAVLRISEAIAACREPEELARTLADEIGKFL
Number of Associated Samples	91
Number of Associated Scaffolds	131

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	60.47 %
% of genes near scaffold ends (potentially truncated)	96.95 %
% of genes from short scaffolds (< 2000 bps)	85.50 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (93.130 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (36.641 % of family members)
Environment Ontology (ENVO)	Unclassified (42.748 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (55.725 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 48.00% β-sheet: 0.00% Coil/Unstructured: 52.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.47
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.47
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 131 Family Scaffolds
PF13505	OMP_b-brl	6.87
PF02954	HTH_8	3.05
PF00196	GerE	2.29
PF01408	GFO_IDH_MocA	2.29
PF13561	adh_short_C2	1.53
PF13620	CarboxypepD_reg	1.53
PF00561	Abhydrolase_1	0.76
PF01425	Amidase	0.76
PF03699	UPF0182	0.76
PF05569	Peptidase_M56	0.76
PF00069	Pkinase	0.76
PF02797	Chal_sti_synt_C	0.76
PF00296	Bac_luciferase	0.76
PF01590	GAF	0.76
PF00150	Cellulase	0.76
PF08308	PEGA	0.76
PF00479	G6PD_N	0.76
PF02371	Transposase_20	0.76
PF11737	DUF3300	0.76
PF02771	Acyl-CoA_dh_N	0.76
PF14659	Phage_int_SAM_3	0.76
PF02470	MlaD	0.76
PF00578	AhpC-TSA	0.76
PF00440	TetR_N	0.76
PF13432	TPR_16	0.76
PF03479	PCC	0.76
PF00989	PAS	0.76

COG ID	Name	Functional Category	% Frequency in 131 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.05
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.76
COG0364	Glucose-6-phosphate 1-dehydrogenase	Carbohydrate transport and metabolism [G]	0.76
COG1615	Uncharacterized membrane protein, UPF0182 family	Function unknown [S]	0.76
COG1661	Predicted DNA-binding protein with PD1-like DNA-binding motif, PPC/DUF296 domain	General function prediction only [R]	0.76
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.76
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.76
COG2730	Aryl-phospho-beta-D-glucosidase BglC, GH1 family	Carbohydrate transport and metabolism [G]	0.76
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.76
COG3934	Endo-1,4-beta-mannosidase	Carbohydrate transport and metabolism [G]	0.76

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	93.13 %
Unclassified	root	N/A	6.87 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	93.13 %
Unclassified	root	N/A	6.87 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	93.13 %
Unclassified	root	N/A	6.87 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	34.35 %
Unclassified	root	N/A	6.87 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	6.11 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	20.61 %
Unclassified	root	N/A	6.87 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	6.11 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	6.11 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	0.76 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	20.61 %
Unclassified	root	N/A	6.87 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	6.11 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	6.11 %
unclassified Blastocatellia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia	0.76 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	20.61 %
Unclassified	root	N/A	6.87 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	6.11 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5.34 %
unclassified Terriglobales	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales	0.76 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.76 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	20.61 %
Unclassified	root	N/A	6.87 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	6.11 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	0.76 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	0.76 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	0.76 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.76 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	20.61 %
Unclassified	root	N/A	6.87 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	6.11 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.76 %
Acidobacteriaceae bacterium KBS 83	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	0.76 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	0.76 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.76 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002908\|JGI25382J43887_10068830	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1913	Open in IMG/M
3300005174\|Ga0066680_10744151	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	596	Open in IMG/M
3300005335\|Ga0070666_10758675	All Organisms → cellular organisms → Bacteria	713	Open in IMG/M
3300005437\|Ga0070710_10642617	All Organisms → cellular organisms → Bacteria	743	Open in IMG/M
3300005518\|Ga0070699_100071170	All Organisms → cellular organisms → Bacteria	3024	Open in IMG/M
3300005541\|Ga0070733_10210978	All Organisms → cellular organisms → Bacteria	1272	Open in IMG/M
3300005553\|Ga0066695_10889598	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300005602\|Ga0070762_10405880	All Organisms → cellular organisms → Bacteria	879	Open in IMG/M
3300005602\|Ga0070762_10492155	All Organisms → cellular organisms → Bacteria	803	Open in IMG/M
3300005610\|Ga0070763_10677603	All Organisms → cellular organisms → Bacteria	602	Open in IMG/M
3300005921\|Ga0070766_10375740	All Organisms → cellular organisms → Bacteria → Acidobacteria	927	Open in IMG/M
3300006102\|Ga0075015_101010256	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300006175\|Ga0070712_101301120	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	633	Open in IMG/M
3300006237\|Ga0097621_102219046	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300006854\|Ga0075425_102615327	Not Available	557	Open in IMG/M
3300006871\|Ga0075434_101745706	All Organisms → cellular organisms → Bacteria	630	Open in IMG/M
3300006903\|Ga0075426_10883884	All Organisms → cellular organisms → Bacteria → Acidobacteria	674	Open in IMG/M
3300009012\|Ga0066710_104514840	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	520	Open in IMG/M
3300009101\|Ga0105247_10052535	All Organisms → cellular organisms → Bacteria	2513	Open in IMG/M
3300011271\|Ga0137393_11441059	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300012202\|Ga0137363_11089943	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	679	Open in IMG/M
3300012203\|Ga0137399_11144395	All Organisms → cellular organisms → Bacteria	655	Open in IMG/M
3300012205\|Ga0137362_10186446	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1784	Open in IMG/M
3300012205\|Ga0137362_11493696	All Organisms → cellular organisms → Bacteria	562	Open in IMG/M
3300012211\|Ga0137377_10916068	All Organisms → cellular organisms → Bacteria	808	Open in IMG/M
3300012285\|Ga0137370_10066655	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1965	Open in IMG/M
3300012361\|Ga0137360_10319426	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1293	Open in IMG/M
3300012362\|Ga0137361_10349845	All Organisms → cellular organisms → Bacteria	1356	Open in IMG/M
3300012683\|Ga0137398_10909573	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	613	Open in IMG/M
3300012685\|Ga0137397_11362203	Not Available	501	Open in IMG/M
3300012917\|Ga0137395_10264856	All Organisms → cellular organisms → Bacteria	1210	Open in IMG/M
3300012917\|Ga0137395_10678041	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	746	Open in IMG/M
3300012923\|Ga0137359_10260353	All Organisms → cellular organisms → Bacteria	1547	Open in IMG/M
3300012925\|Ga0137419_10003565	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	7457	Open in IMG/M
3300012925\|Ga0137419_11918896	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300012929\|Ga0137404_11896527	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	555	Open in IMG/M
3300012930\|Ga0137407_10338660	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1383	Open in IMG/M
3300012986\|Ga0164304_11240469	All Organisms → cellular organisms → Bacteria → Acidobacteria	604	Open in IMG/M
3300013297\|Ga0157378_11993927	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	630	Open in IMG/M
3300015054\|Ga0137420_1464643	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4590	Open in IMG/M
3300018044\|Ga0187890_10552260	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300020579\|Ga0210407_10133235	All Organisms → cellular organisms → Bacteria → Acidobacteria	1907	Open in IMG/M
3300020579\|Ga0210407_10237767	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1418	Open in IMG/M
3300020579\|Ga0210407_10731102	All Organisms → cellular organisms → Bacteria	766	Open in IMG/M
3300020579\|Ga0210407_11029770	All Organisms → cellular organisms → Bacteria	627	Open in IMG/M
3300020580\|Ga0210403_11239296	All Organisms → cellular organisms → Bacteria	573	Open in IMG/M
3300020581\|Ga0210399_10913172	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	711	Open in IMG/M
3300020581\|Ga0210399_11500684	All Organisms → cellular organisms → Bacteria	523	Open in IMG/M
3300020582\|Ga0210395_10143911	Not Available	1777	Open in IMG/M
3300021088\|Ga0210404_10568533	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	643	Open in IMG/M
3300021168\|Ga0210406_10264596	All Organisms → cellular organisms → Bacteria	1407	Open in IMG/M
3300021168\|Ga0210406_10921926	All Organisms → cellular organisms → Bacteria	656	Open in IMG/M
3300021170\|Ga0210400_10446880	All Organisms → cellular organisms → Bacteria	1066	Open in IMG/M
3300021170\|Ga0210400_11221783	All Organisms → cellular organisms → Bacteria	605	Open in IMG/M
3300021171\|Ga0210405_10501768	All Organisms → cellular organisms → Bacteria	951	Open in IMG/M
3300021178\|Ga0210408_10609268	All Organisms → cellular organisms → Bacteria	864	Open in IMG/M
3300021180\|Ga0210396_10006686	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11021	Open in IMG/M
3300021180\|Ga0210396_11119989	All Organisms → cellular organisms → Bacteria	662	Open in IMG/M
3300021180\|Ga0210396_11276254	All Organisms → cellular organisms → Bacteria	612	Open in IMG/M
3300021180\|Ga0210396_11667616	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300021401\|Ga0210393_11675785	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	503	Open in IMG/M
3300021403\|Ga0210397_10477184	All Organisms → cellular organisms → Bacteria	942	Open in IMG/M
3300021403\|Ga0210397_10784106	All Organisms → cellular organisms → Bacteria	735	Open in IMG/M
3300021404\|Ga0210389_10486146	All Organisms → cellular organisms → Bacteria	971	Open in IMG/M
3300021404\|Ga0210389_10842126	All Organisms → cellular organisms → Bacteria → Acidobacteria	715	Open in IMG/M
3300021405\|Ga0210387_11314456	All Organisms → cellular organisms → Bacteria	624	Open in IMG/M
3300021405\|Ga0210387_11363254	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	611	Open in IMG/M
3300021405\|Ga0210387_11428429	All Organisms → cellular organisms → Bacteria	594	Open in IMG/M
3300021406\|Ga0210386_10563794	All Organisms → cellular organisms → Bacteria	984	Open in IMG/M
3300021407\|Ga0210383_11197217	All Organisms → cellular organisms → Bacteria	638	Open in IMG/M
3300021420\|Ga0210394_10300653	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1408	Open in IMG/M
3300021420\|Ga0210394_11478687	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300021420\|Ga0210394_11741811	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300021432\|Ga0210384_10524435	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1066	Open in IMG/M
3300021432\|Ga0210384_11684670	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	539	Open in IMG/M
3300021433\|Ga0210391_10334101	All Organisms → cellular organisms → Bacteria → Acidobacteria	1189	Open in IMG/M
3300021433\|Ga0210391_10357184	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1146	Open in IMG/M
3300021433\|Ga0210391_11152225	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300021474\|Ga0210390_10531232	All Organisms → cellular organisms → Bacteria	989	Open in IMG/M
3300021474\|Ga0210390_10853000	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	752	Open in IMG/M
3300021477\|Ga0210398_10709492	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	813	Open in IMG/M
3300021478\|Ga0210402_10295450	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1499	Open in IMG/M
3300021479\|Ga0210410_10780151	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	840	Open in IMG/M
3300021479\|Ga0210410_10819528	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	816	Open in IMG/M
3300022713\|Ga0242677_1082871	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300023046\|Ga0233356_1028995	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
3300024330\|Ga0137417_1211022	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	598	Open in IMG/M
3300025906\|Ga0207699_10559378	All Organisms → cellular organisms → Bacteria	830	Open in IMG/M
3300025922\|Ga0207646_10087525	All Organisms → cellular organisms → Bacteria → Acidobacteria	2787	Open in IMG/M
3300025961\|Ga0207712_11646736	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300026285\|Ga0209438_1174322	All Organisms → cellular organisms → Bacteria	566	Open in IMG/M
3300026296\|Ga0209235_1043558	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2214	Open in IMG/M
3300026301\|Ga0209238_1002379	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	7414	Open in IMG/M
3300026557\|Ga0179587_10437898	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	854	Open in IMG/M
3300026999\|Ga0207949_1014193	All Organisms → cellular organisms → Bacteria	723	Open in IMG/M
3300027076\|Ga0208860_1017016	All Organisms → cellular organisms → Bacteria	715	Open in IMG/M
3300027567\|Ga0209115_1093399	All Organisms → cellular organisms → Bacteria	684	Open in IMG/M
3300027676\|Ga0209333_1107289	All Organisms → cellular organisms → Bacteria	759	Open in IMG/M
3300027729\|Ga0209248_10004507	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	4429	Open in IMG/M
3300027842\|Ga0209580_10604875	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	543	Open in IMG/M
3300027842\|Ga0209580_10679570	Not Available	509	Open in IMG/M
3300027855\|Ga0209693_10506407	All Organisms → cellular organisms → Bacteria	577	Open in IMG/M
3300027875\|Ga0209283_10652933	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	662	Open in IMG/M
3300027895\|Ga0209624_10863187	Not Available	592	Open in IMG/M
3300027908\|Ga0209006_11291637	All Organisms → cellular organisms → Bacteria	565	Open in IMG/M
3300028036\|Ga0265355_1018925	All Organisms → cellular organisms → Bacteria	591	Open in IMG/M
3300028536\|Ga0137415_10017292	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	7150	Open in IMG/M
3300029636\|Ga0222749_10285547	All Organisms → cellular organisms → Bacteria	849	Open in IMG/M
3300030814\|Ga0265741_100028	All Organisms → cellular organisms → Bacteria	4245	Open in IMG/M
3300031708\|Ga0310686_106554699	All Organisms → cellular organisms → Bacteria	1140	Open in IMG/M
3300031715\|Ga0307476_10466214	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	935	Open in IMG/M
3300031715\|Ga0307476_10871534	All Organisms → cellular organisms → Bacteria	665	Open in IMG/M
3300031715\|Ga0307476_10986775	All Organisms → cellular organisms → Bacteria	620	Open in IMG/M
3300031718\|Ga0307474_10074628	All Organisms → cellular organisms → Bacteria	2520	Open in IMG/M
3300031718\|Ga0307474_10417176	All Organisms → cellular organisms → Bacteria → Acidobacteria	1046	Open in IMG/M
3300031718\|Ga0307474_10693594	All Organisms → cellular organisms → Bacteria	804	Open in IMG/M
3300031753\|Ga0307477_10058662	All Organisms → cellular organisms → Bacteria → Acidobacteria	2650	Open in IMG/M
3300031754\|Ga0307475_10126890	All Organisms → cellular organisms → Bacteria	2013	Open in IMG/M
3300031754\|Ga0307475_10143316	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1894	Open in IMG/M
3300031754\|Ga0307475_10513261	Not Available	962	Open in IMG/M
3300031823\|Ga0307478_10026574	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4135	Open in IMG/M
3300031823\|Ga0307478_10149021	Not Available	1855	Open in IMG/M
3300031823\|Ga0307478_10331399	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1251	Open in IMG/M
3300031823\|Ga0307478_10585679	All Organisms → cellular organisms → Bacteria	933	Open in IMG/M
3300031823\|Ga0307478_11508702	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300031962\|Ga0307479_10027755	All Organisms → cellular organisms → Bacteria	5380	Open in IMG/M
3300031962\|Ga0307479_10050396	All Organisms → cellular organisms → Bacteria	4001	Open in IMG/M
3300031962\|Ga0307479_10727540	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	970	Open in IMG/M
3300031962\|Ga0307479_10966028	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	822	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	93.13%
Host-Associated	Host-Associated	6.87%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	90.84%
Plants	Host-Associated → Plants	6.87%
Aquatic	Environmental → Aquatic	2.29%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	90.84%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.11%
Freshwater	Environmental → Aquatic → Freshwater	1.53%
Sediment	Environmental → Aquatic → Sediment	0.76%
Roots	Host-Associated → Plants → Roots	0.76%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	78.63%
Loam	Environmental → Terrestrial → Soil → Loam	12.21%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.58%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.53%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.53%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.76%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.76%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	51.14%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.14%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.40%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.34%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.58%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.82%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.53%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.53%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.76%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.76%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	36.64%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	17.56%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	14.50%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.58%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.82%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.82%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.29%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.29%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.29%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.53%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.53%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.76%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.76%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.76%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.76%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.76%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.76%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.76%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300018044	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300022713	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300023046	Soil microbial communities from Shasta-Trinity National Forest, California, United States - GEON-SFM-MS	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental	Open in IMG/M
3300026296	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300026999	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF044 (SPAdes)	Environmental	Open in IMG/M
3300027076	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF012 (SPAdes)	Environmental	Open in IMG/M
3300027567	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027676	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes)	Environmental	Open in IMG/M
3300027729	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028036	Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE2	Host-Associated	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030814	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSI2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25382J43887_100688301	3300002908	Grasslands Soil	MGTEPIVESQTGSYRYEAIVRISETIAACREPEEMATTLASEIGK
Ga0066680_107441511	3300005174	Soil	MGTELIVESQTGSYRYEAIVRISEAIAACREPEEMAATLASEIG
Ga0070666_107586751	3300005335	Switchgrass Rhizosphere	MGTEPIVESQTDSYRYEAIVRISEAIAACREPKELATTLADEIGKLLRFDHLYFV
Ga0070710_106426171	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MGTDSIIAPRCDASRYEAVVRISEAIAACREPEQLATTLADEIGKFLNFD
Ga0070699_1000711705	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MDTDPIVAPPSDSHRYAAVVRISEAIAACREPEELATTLADEIGKFLNFDH
Ga0070733_102109781	3300005541	Surface Soil	MGTELIIAPQSDSRRYEAVLRISEAIAACREPEELAKTLADQIGKFLHFDHLYFVV
Ga0066695_108895981	3300005553	Soil	MGTEPIVESQTGSYRSEAIVRISETIAACREPEELATTLASEIGKFLRFDHLYFV
Ga0070762_104058801	3300005602	Soil	MGTDPIIAPQCDTHRYEAVVRISEAIAACREPEELATTLASEIGK
Ga0070762_104921552	3300005602	Soil	MGTEPIIESQTDSHRYEAIVRISEAIAACREPKELATTLADEIG
Ga0070763_106776032	3300005610	Soil	MISPESDSHRYEAVLRISEAIAACREPEELATTLASEIGKFLHFDHLYFVVLK
Ga0070766_103757401	3300005921	Soil	MGTEPIIESQTDSYRYEALVRISEAIAACREPKELATT
Ga0075015_1010102561	3300006102	Watersheds	MGTDLIIAPQSDSHRYEAVLRISEAIAACREPEELAKTLADQIGKLLH
Ga0070712_1013011202	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MGTDSIIASQGDSHRYEAVLRISEAIAACREPEELARTLADEIGKLLHFDHLYF
Ga0097621_1022190462	3300006237	Miscanthus Rhizosphere	MGTEPIVESQTDSYRYEAIVRISEAIAACREPKELATTLADEIGKLLRFD
Ga0075425_1026153271	3300006854	Populus Rhizosphere	MATNPTLPPQSDTHRYEAVVRISKAIAACREPQELA
Ga0075434_1017457061	3300006871	Populus Rhizosphere	MGTDPIAPQSDSHRYEAVLRISEAIAACREPEDLATTLASEIGKF
Ga0075426_108838842	3300006903	Populus Rhizosphere	MATNPTIPPQSDTDRYKAVVRISKAIAACREPQELASTLADEIGK
Ga0066710_1045148401	3300009012	Grasslands Soil	MGTEPIVESQTGSYRSEAIVRISETIAACREPEELATTLASEIGKFL
Ga0105247_100525356	3300009101	Switchgrass Rhizosphere	MGTEPIVESQTDSYRYEAIVRISEAIAACREPKELATTLADEIGKLLRFDHLYFVV
Ga0137393_114410591	3300011271	Vadose Zone Soil	MGTDPIIAPLSDTHRYEAVVRISEAIAACREPEELATTLADEIGK
Ga0137363_110899432	3300012202	Vadose Zone Soil	MATEPIVESQTSSYRYEAIVRISETIAACREPEELATTLASEIG
Ga0137399_111443952	3300012203	Vadose Zone Soil	MGTDPIIAPLSDTHRYEAVVRISEAIAACREPEELATTLADEIGKF
Ga0137362_101864461	3300012205	Vadose Zone Soil	MGTDPIIAPLSDTRRYEAIVRISETIAACREPEEMATTLASEI
Ga0137362_114936961	3300012205	Vadose Zone Soil	MGTEPIVESQTGSYRYEAVVRISEAIAACREPEELARTLADEIGKFLQFDHLYFIVF
Ga0137377_109160681	3300012211	Vadose Zone Soil	MGTDPIIAPLSDTHRYEAVVRISEAIAACREPEQLATTLADEIGKY
Ga0137370_100666551	3300012285	Vadose Zone Soil	MGTEPIVESQTGSYRYEAVVRISEAIAACREPKELARILADEIGKFLQFDHLYFIVFKEN
Ga0137360_103194261	3300012361	Vadose Zone Soil	MGTDPIIAPLSDTRRYEAIVRISETIAACREPEEMATTLASEIRKFLHFDH
Ga0137361_103498454	3300012362	Vadose Zone Soil	MGTDPIIAPLSDTHRYEAVVRISEAIAACREPEELATTLADEIGKFLNFDHLYFVVLKE
Ga0137398_109095731	3300012683	Vadose Zone Soil	MATEPIVESQTGSYRYEAIVRISETIAACREPEELATTLASEIGKFLHFDHLY
Ga0137397_113622031	3300012685	Vadose Zone Soil	MNTDPIIASRNDRSRFEAVVRISEAITECSEPDELARALADEISKFIH
Ga0137395_102648561	3300012917	Vadose Zone Soil	MGTDPIIAPLSDTHRYEAVVRISEAIAACREPEELATT
Ga0137395_106780412	3300012917	Vadose Zone Soil	MGTEPIVESQTGSYRYEAIVRISETIAACREPEEMATTLASEIG
Ga0137359_102603531	3300012923	Vadose Zone Soil	MGTDPIIAPLSDTHRYEAVVRISEAIAACREPEELATTLADEIGKFLNFDHLYFV
Ga0137419_100035651	3300012925	Vadose Zone Soil	MDSIIVHESDSRHYEAVRRISEAIAACREPEELATTLASEIGKFLHFDHLY
Ga0137419_119188961	3300012925	Vadose Zone Soil	MVTDPIITPEIHSHRYEVVVRISEAIAACREPEQLATTLADEIGKFLNFDHLYFVVL
Ga0137404_118965271	3300012929	Vadose Zone Soil	MRTEPIVESQTGSYRYKEIVRISETIAACREPEEMATTLASEIGKFLHFDHLYFVV
Ga0137407_103386601	3300012930	Vadose Zone Soil	MGTDVIIAPQSGGHRYEAVLRISEAIAACREPEELATTL
Ga0164304_112404691	3300012986	Soil	MGTEPIVESQTDSYRYEAIVRISEAIAACGEPKELW
Ga0157378_119939271	3300013297	Miscanthus Rhizosphere	MGTEPLVESQTGSYRYEAIVRISETIAACREPEEMATTLASEIGKFLHFD
Ga0137420_14646435	3300015054	Vadose Zone Soil	MGTEPIVESQTGSYRYEAIVRISETIAACREPEEMATTLASEIGKFLHSTTFTSLC*
Ga0187890_105522602	3300018044	Peatland	MATELIVESQTGSYRYEAIVRISEAIAACREPKELATTLADE
Ga0210407_101332354	3300020579	Soil	MGTDPIIAPQSDTRRYEAIVRISEAIAACREPEQLATTLADEIGKFLNF
Ga0210407_102377671	3300020579	Soil	MGTDPIIAPQSDASRYEAVMRISEAIAACGEPEELATNLADE
Ga0210407_107311022	3300020579	Soil	MGTEPIIGPQSDTHRYAAVLRISEAIAACREPEELATTLASEIGKFLQFDHLYFVVLK
Ga0210407_110297702	3300020579	Soil	MGTESIIAPLSDSFRYEAVVRISEAIAACREPEELARTLADEIGKLLPFDHLYFFVF
Ga0210403_112392961	3300020580	Soil	MGTEPIIAPQSDTLRYAAVLRISEAIAACREPEELATTLASEIGKFLQFD
Ga0210399_109131723	3300020581	Soil	MSTDPIIATQCDASRYEAVVRISEAIAACGEPAELATSLANEI
Ga0210399_115006841	3300020581	Soil	MNDTVPVIGDETSSHHYEAVMRISEAIAAYREPEELARTLSVEIGGFLHFDHLYFTVFKENSS
Ga0210395_101439112	3300020582	Soil	MSIDPIIAPQCDTHRYEAVVRISEAIAACREPEELATTLASEIG
Ga0210404_105685331	3300021088	Soil	MGTEPIVESQTDSYRYEAIVRISEAIAACRDPEELATTLASE
Ga0210406_102645964	3300021168	Soil	MGTEPIVESQTDSYRYQAIVRISEAIAACREPKELAT
Ga0210406_109219261	3300021168	Soil	MDSIIVHESDSRHYEAVRRISEAIAACREPEQLATTVAAEIGKFLNFDH
Ga0210400_104468802	3300021170	Soil	MNNSLPVIARETSSPRYEAVVRISEAIAACREPEELAHTLADEIGDF
Ga0210400_112217831	3300021170	Soil	MGTESIVESQPGSHRYEAIVRISEAIAACREPKELAATLAVEIGKLLN
Ga0210405_103594052	3300021171	Soil	MDSIIVHESDSRHYEAVRLISEAIAACREPEQLATTLADEIGKF
Ga0210405_104625792	3300021171	Soil	MDSMIVHESNSRHYEAVRRISEAISACRDPEELATTLADEIGKSLN
Ga0210405_105017681	3300021171	Soil	MGTEPIIAPLSDSYRYEAVVRISEAIAACREPEELATTL
Ga0210408_106092681	3300021178	Soil	MDSIIVHESDSRHYEAVRLISEAIAACREPEQLATTLADEIGKFLNFDHLYL
Ga0210396_1000668614	3300021180	Soil	MGTDPIIAPQSDTRRYEAIVRISEAIAACREPEQLATTLADEIGKFLNFDHLYLVVLQER
Ga0210396_111199892	3300021180	Soil	MNTDLIVAPQSDSHCYEAVLRISEAIAACREPEELAGALADEIGNFLHF
Ga0210396_112762541	3300021180	Soil	MGTDPIIAPQCDTHRYEAVVRISEAIAACREPEELATTLASEIG
Ga0210396_116676162	3300021180	Soil	MTSPESDSHQYKAVLRISEAIAACREPEELARTLADEI
Ga0210393_116757851	3300021401	Soil	MGTDSIIASQVDSHRYEAVLRISEAIAACREPEELARTLADEIG
Ga0210397_104771841	3300021403	Soil	MNNTVAVIARETSSPHYEAVMRISEAIAACREPEELASTLADEIGDFFHFDHLYLTVFKE
Ga0210397_107841062	3300021403	Soil	MGTDSIIASQGDSHRYEAALRISEAIAASREPEELARTLADEIGKLLDFDHLYFVVV
Ga0210389_104861461	3300021404	Soil	MNNSVAVIPRETSSPHYEAVIRISEAIAACREPEELASTLADEIGDFFHF
Ga0210389_108421261	3300021404	Soil	MGTEPIIESQTDSYRYEALVRISEAIAACREPKELATTLADEIGK
Ga0210387_113144561	3300021405	Soil	MGTDPINAPQCDTHRYEAVVRISEAIAACREPEQLATTLADEIGKFLNFDHLYLV
Ga0210387_113632542	3300021405	Soil	MNNTVSVIERETSSYRYEAVMHISEAIAACREPEELAGTLADEIGKLLHFEHL
Ga0210387_114284291	3300021405	Soil	MDSIIVHENDSRHYEAVRRISEAIAGCREPEQLATTLADEIGKF
Ga0210386_105637943	3300021406	Soil	MGTDPISAPQSDSHRYEAVLRISEAIAACREPEELATTLASEIGKFLQFDHLY
Ga0210383_111972172	3300021407	Soil	MGIDLIIAPQSDSHRYEAVLRISEAIAACREPEDLATTLASEIGKF
Ga0210394_103006532	3300021420	Soil	MGTDPIIAPQSDTHRYQAVLRISEAIAACREPEELATTLASEIGK
Ga0210394_114786872	3300021420	Soil	MSIDPIIAPQCDTHRYEAVVRISEAIAACREPEELATTLASEIGKLLH
Ga0210394_117418111	3300021420	Soil	MSTDPIIAPQRDASRYEAVMRISEAIAACGEPEELATSLADEIGKFLQFDHL
Ga0210384_105244353	3300021432	Soil	MGTDPIIAPQSDTHRYEAVVRISEAIAACREPEQLATTLA
Ga0210384_116846702	3300021432	Soil	MGTDSIIASQVDSHRYEAVLRISEAIAACREPEELARTLAD
Ga0210391_103341011	3300021433	Soil	MGTDPIIAPQCDTHRYEAVLRISEAIAACREPEELATTLASEIGKFLHFDHLY
Ga0210391_103571841	3300021433	Soil	MGTDPITAPQCDASRYEAVVRISEAIAACGEPEELATSLADEIGKFLQFDHLYFIVFK
Ga0210391_111522251	3300021433	Soil	MSTEPIVESQADSYRYEAIVRISEAIAACREPEELASTLTD
Ga0210390_105312323	3300021474	Soil	MGIDPIVAPQSDSHRYEAVLRISEAIAACREPEDLATTLASEIGKFLHF
Ga0210390_108530002	3300021474	Soil	MSTDLIISPQTDSQRYEAVLRISEAIAACPEPEELAGTLADEIGKFL
Ga0210398_107094921	3300021477	Soil	MGTDLLIAPQSGNHRYDAVLRISEAIAACREPEELASTLAGEIDKLL
Ga0210402_102954504	3300021478	Soil	MGTDPIIAPQCDASRYEAVMRISEAIAACGEPEELATSLADEIGKFLQFDHL
Ga0210410_107801511	3300021479	Soil	MGTDPFITPQCDTHRYEAVLRISEAIAECREPEELATTLA
Ga0210410_108195281	3300021479	Soil	MGTESIVESQPGSYRYEAIVRISEAIAACREPKELATTLADEIGKLLNFDHLYFVVVKEN
Ga0242677_10828711	3300022713	Soil	MGTDLLIAPQSGNHRYDAVLRISEAIAACREPEELASTLAGEIDKLLHIDHLYFFVFK
Ga0233356_10289951	3300023046	Soil	MGTDAIIAPQSETHRYETVVRISEAIAACREPEQLATTLASEIGKFLNFD
Ga0137417_12110221	3300024330	Vadose Zone Soil	MGTEPIVESQTGSYRYEAIVRISETIAACREPEEMATTLASEIGKFTTLA
Ga0207699_105593782	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MGTDSIIASQGDSHRYEAVLRISEAIAACREPEELARTLADEIGKLLHFDHLYFVV
Ga0207646_100875255	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MATNPTLPPPSDTHRYEAVVRISKAIAACREPQELASTLADEIGKVLQFDH
Ga0207712_116467362	3300025961	Switchgrass Rhizosphere	MGTEPIVESQTDSYRYEAIVRISEAIAACREPKELATTLAD
Ga0209438_11743221	3300026285	Grasslands Soil	MGTDPIIAPLSDTHRYEAVVRISEAIAACHEPEELATTLADEIGKF
Ga0209235_10435581	3300026296	Grasslands Soil	MGTEPIVEPQTGSYRYEAVVRISEAIAACREPEELARTLADEIGKFLQFD
Ga0209238_10023797	3300026301	Grasslands Soil	MGTEPIVESQTGSYRYEAIVRISETIAACREPEELATT
Ga0179587_104378981	3300026557	Vadose Zone Soil	MGTDLMIEPQSDSLRYGAVLRISEAIAACREPEELATTLASEIDK
Ga0207949_10141931	3300026999	Forest Soil	MGTDPFITPQCDTHRYEAVLRISEAIAECREPEELATTLASEIGKFL
Ga0208860_10170162	3300027076	Forest Soil	MGTDLIIAPQSDSHRYEAVLRISEAIAACREPEELATT
Ga0209115_10933991	3300027567	Forest Soil	MATNPPITPQSDMHRYKAVVRVSEAIAACREPDELARTLADELDKLLQFDHLYFVVL
Ga0209333_11072892	3300027676	Forest Soil	MGTEPIVESQIGDSQTDSYRYEAIVRTSEAIAACREPKELATTLADEIGKLLDFDHLYFA
Ga0209248_100045071	3300027729	Bog Forest Soil	MNNTVPVIARDTGSRHYEAVMCISEAIAACREPEELASALADEVGDFLHFDHLYLTVFKE
Ga0209580_106048751	3300027842	Surface Soil	MGTDPIIAPQCDASRYEAVVRISEAIAVCRKPKELATTLADEIGKLLDFDH
Ga0209580_106795701	3300027842	Surface Soil	MATNPTLPPQSDTHRYEAVVRISKAIAACREPQELASTL
Ga0209693_105064071	3300027855	Soil	MGTDLIIAPQSDGRRYEAVLHISEAIAACREPGELATTLASEIGKFLH
Ga0209283_106529332	3300027875	Vadose Zone Soil	MGTEPIVESQTGSYRYEAIVRISETIAACREPEEMAT
Ga0209624_108631871	3300027895	Forest Soil	MATEPIVESQRDSYRYEAVVRISEAITASREPKELATTLADEIGKLLDFDHLY
Ga0209006_112916371	3300027908	Forest Soil	MGTDPIIASQSDSHRYEAVLRISEAIAACREPEELARTLADEIGKFL
Ga0265355_10189251	3300028036	Rhizosphere	MDTEPIVESQIDSYRYEAIVRISEVIAACREPKELATTLADEIGKLLNYD
Ga0137415_100172927	3300028536	Vadose Zone Soil	MDSIIVHESDSRHYEAVRRISEAIAACREPEELATTLASEIGKFLHFDHLYFVVLKEN
Ga0222749_102855472	3300029636	Soil	MGTDPIIAPQSDTHRYEAVLRISEAIAACGEPEQLAITLADEIGKFLNFD
Ga0265741_1000281	3300030814	Soil	MDTEPIVESQIDSYRYEAIVRISEVIAACREPKELATTLADEIGKLLNYDHLFFVVVKENTQ
Ga0310686_1065546991	3300031708	Soil	MGIDPIVESQTDSYRYEAIVRISEATAACREPKELATTLADEIGKLLNFDHLYF
Ga0307476_104662143	3300031715	Hardwood Forest Soil	MGTDPFITPQCDTHRYEAVLRISEAIAECREPEELATTLASE
Ga0307476_108715341	3300031715	Hardwood Forest Soil	MGTDLMIAPQSDSQRYEAVLRISEAIAACREPEEL
Ga0307476_109867752	3300031715	Hardwood Forest Soil	MDCKAMGTDLIIAPQSDSQRYEAVVRISEAIAACREPEQLATTLADE
Ga0307474_100746281	3300031718	Hardwood Forest Soil	MGTGPIIAPQSDSRRYEAVLRIGEAIAACREPEDLATTLACEIGKFLHFEHLYF
Ga0307474_104171762	3300031718	Hardwood Forest Soil	MGTEPIVESQTDSYRYEAIVRISEAIAACREPKELATTLADEIGKLLNFDHL
Ga0307474_106935941	3300031718	Hardwood Forest Soil	MGTDPIIAPQSDTHRYEAVVRISEAIAACREPEQLATTLADEIGKFLN
Ga0307477_100586621	3300031753	Hardwood Forest Soil	VWIVYGYSLIIAPQSDSYRYEAVLRISEAIAACREPEELAKTLA
Ga0307475_101268901	3300031754	Hardwood Forest Soil	MGTDPFIAPQSDNHRYEAVLRISEAIAACREPEELA
Ga0307475_101433161	3300031754	Hardwood Forest Soil	MGTDPIIAPESDSHRYEAVLRISEAIAACREPEEL
Ga0307475_105132611	3300031754	Hardwood Forest Soil	MGTEPITEFQRDCHRYEAVMRISEAIAACREPDELA
Ga0307478_100265744	3300031823	Hardwood Forest Soil	MNNLVPVIARETSSPRYEAVVRISEAIAACREPEELARTLADEIGD
Ga0307478_101490211	3300031823	Hardwood Forest Soil	MGTDPIVAPQSDSHRYEAVLRISEAIAACREPEELAKTLADQIGKFLH
Ga0307478_103313993	3300031823	Hardwood Forest Soil	MNNTVPVIARETSSHRYEAVMRISEAIAACRDPEELASTLADEIGDFLHFDH
Ga0307478_105856792	3300031823	Hardwood Forest Soil	MNNSLPVIARETSSPRYEAVVRISEAIAACREPEELARTLADEIGDFLHFDHLY
Ga0307478_115087021	3300031823	Hardwood Forest Soil	MGTDLIIAPQSETQRYEAVVRISEAIAACREPEQLATTLADEIGKFLN
Ga0307479_100277551	3300031962	Hardwood Forest Soil	MGTEPMLESQTGSYRYEAIVRISETIAACREPEELATTVASEI
Ga0307479_100503961	3300031962	Hardwood Forest Soil	MGTDSIIAPQSDSHRYEAVLRISEAIAECREPEELATTLASEIGKFLYFDHLYF
Ga0307479_107275401	3300031962	Hardwood Forest Soil	MNKAVPVIAREPRSHHYEAVMRISEAIAACREPEELARTLADEMGAFLHFDLL
Ga0307479_109660282	3300031962	Hardwood Forest Soil	MGTDPIIAPQSDSNRYEAVLRISEAIAACREPEELATTLASEIGKFLHFD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F062038

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences