Metagenome / Metatranscriptome Family F061968

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F061968
Family Type	Metagenome / Metatranscriptome
Number of Sequences	131
Average Sequence Length	80 residues
Representative Sequence	MTNKVLSIEMGHALGIFGLFLMLVIARLSNHAYEPQQTAADRLTSFLARRVIDGIAAIGWVVDHVPAPSAPHYGVRTPQRAR
Number of Associated Samples	115
Number of Associated Scaffolds	131

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	86.26 %
% of genes near scaffold ends (potentially truncated)	25.95 %
% of genes from short scaffolds (< 2000 bps)	80.92 %
Associated GOLD sequencing projects	98
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (79.389 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil (15.267 % of family members)
Environment Ontology (ENVO)	Unclassified (38.931 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (59.542 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 60.98% β-sheet: 0.00% Coil/Unstructured: 39.02%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 131 Family Scaffolds
PF04191	PEMT	10.69
PF07298	NnrU	7.63
PF04304	DUF454	4.58
PF13640	2OG-FeII_Oxy_3	2.29
PF13401	AAA_22	2.29
PF13424	TPR_12	1.53
PF01145	Band_7	0.76
PF13857	Ank_5	0.76
PF07714	PK_Tyr_Ser-Thr	0.76
PF02086	MethyltransfD12	0.76
PF07676	PD40	0.76
PF12833	HTH_18	0.76
PF04140	ICMT	0.76

COG ID	Name	Functional Category	% Frequency in 131 Family Scaffolds
COG4094	Uncharacterized membrane protein	Function unknown [S]	7.63
COG2832	Uncharacterized membrane protein YbaN, DUF454 family	Function unknown [S]	4.58
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.05
COG0338	DNA-adenine methylase	Replication, recombination and repair [L]	0.76
COG3392	Adenine-specific DNA methylase	Replication, recombination and repair [L]	0.76

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	79.39 %
Unclassified	root	N/A	20.61 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	79.39 %
Unclassified	root	N/A	20.61 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	79.39 %
Unclassified	root	N/A	20.61 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.61 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	19.08 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	11.45 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	6.87 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	3.82 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.61 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	11.45 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	6.11 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	5.34 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3.82 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	3.05 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.76 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.76 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.61 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	11.45 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	6.11 %
Alteromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales	4.58 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	3.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.05 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.76 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.76 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.61 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	11.45 %
unclassified Cyanobacteria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria	6.11 %
Alteromonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae	4.58 %
Alcaligenaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae	3.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.05 %
Bryobacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae	0.76 %
Sphingobacteriia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia	0.76 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.61 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	11.45 %
Cyanobacteria bacterium 13_1_40CM_2_61_4	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4	6.11 %
Alteromonas/Salinimonas group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Alteromonas/Salinimonas group	4.58 %
Pigmentiphaga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Pigmentiphaga	3.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.05 %
Paludibaculum	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Paludibaculum	0.76 %
Sphingobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales	0.76 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.61 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	11.45 %
Cyanobacteria bacterium 13_1_40CM_2_61_4	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4	6.11 %
Alteromonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Alteromonas/Salinimonas group → Alteromonas	4.58 %
Pigmentiphaga litoralis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Pigmentiphaga → Pigmentiphaga litoralis	3.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.05 %
Paludibaculum fermentans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Paludibaculum → Paludibaculum fermentans	0.76 %
Sphingobacteriaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → Sphingobacteriaceae	0.76 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.61 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	11.45 %
Cyanobacteria bacterium 13_1_40CM_2_61_4	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4	6.11 %
Alteromonas aestuariivivens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Alteromonas/Salinimonas group → Alteromonas → Alteromonas aestuariivivens	4.58 %
Pigmentiphaga litoralis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Pigmentiphaga → Pigmentiphaga litoralis	3.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.05 %
Paludibaculum fermentans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Paludibaculum → Paludibaculum fermentans	0.76 %
Sphingobacteriaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → Sphingobacteriaceae	0.76 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.76 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000559\|F14TC_100060092	All Organisms → cellular organisms → Bacteria	1418	Open in IMG/M
3300000890\|JGI11643J12802_10144007	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	823	Open in IMG/M
3300000891\|JGI10214J12806_10323306	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	719	Open in IMG/M
3300003267\|soilL1_10041753	All Organisms → cellular organisms → Bacteria	3231	Open in IMG/M
3300003993\|Ga0055468_10097026	All Organisms → cellular organisms → Bacteria	825	Open in IMG/M
3300003999\|Ga0055469_10085221	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4	889	Open in IMG/M
3300004114\|Ga0062593_100008275	All Organisms → cellular organisms → Bacteria	4640	Open in IMG/M
3300004114\|Ga0062593_100175953	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Pigmentiphaga → Pigmentiphaga litoralis	1667	Open in IMG/M
3300004114\|Ga0062593_100703459	All Organisms → cellular organisms → Bacteria	986	Open in IMG/M
3300004463\|Ga0063356_100007792	All Organisms → cellular organisms → Bacteria → Proteobacteria	9434	Open in IMG/M
3300004463\|Ga0063356_100191303	All Organisms → cellular organisms → Bacteria	2399	Open in IMG/M
3300004480\|Ga0062592_101607264	Not Available	628	Open in IMG/M
3300005295\|Ga0065707_10009668	All Organisms → cellular organisms → Bacteria	2806	Open in IMG/M
3300005330\|Ga0070690_100120013	All Organisms → cellular organisms → Bacteria	1764	Open in IMG/M
3300005331\|Ga0070670_102184778	Not Available	510	Open in IMG/M
3300005333\|Ga0070677_10279173	All Organisms → cellular organisms → Bacteria	841	Open in IMG/M
3300005334\|Ga0068869_101200014	Not Available	667	Open in IMG/M
3300005336\|Ga0070680_101495047	Not Available	585	Open in IMG/M
3300005340\|Ga0070689_101464765	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Alteromonas/Salinimonas group → Alteromonas → Alteromonas aestuariivivens	618	Open in IMG/M
3300005341\|Ga0070691_10923012	Not Available	540	Open in IMG/M
3300005343\|Ga0070687_100354262	All Organisms → cellular organisms → Bacteria	948	Open in IMG/M
3300005347\|Ga0070668_102095892	Not Available	522	Open in IMG/M
3300005353\|Ga0070669_100323011	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Pigmentiphaga → Pigmentiphaga litoralis	1247	Open in IMG/M
3300005354\|Ga0070675_100004211	All Organisms → cellular organisms → Bacteria → Proteobacteria	10933	Open in IMG/M
3300005355\|Ga0070671_100768084	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	838	Open in IMG/M
3300005355\|Ga0070671_100862190	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4	790	Open in IMG/M
3300005356\|Ga0070674_100561082	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	959	Open in IMG/M
3300005440\|Ga0070705_101595980	All Organisms → cellular organisms → Bacteria	549	Open in IMG/M
3300005441\|Ga0070700_100638853	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4	839	Open in IMG/M
3300005455\|Ga0070663_100872571	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Alteromonas/Salinimonas group → Alteromonas → Alteromonas aestuariivivens	776	Open in IMG/M
3300005456\|Ga0070678_102262328	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Alteromonas/Salinimonas group → Alteromonas → Alteromonas aestuariivivens	516	Open in IMG/M
3300005457\|Ga0070662_100245758	All Organisms → cellular organisms → Bacteria	1437	Open in IMG/M
3300005459\|Ga0068867_101238427	All Organisms → cellular organisms → Bacteria	687	Open in IMG/M
3300005466\|Ga0070685_10172965	All Organisms → cellular organisms → Bacteria	1385	Open in IMG/M
3300005466\|Ga0070685_10880692	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	665	Open in IMG/M
3300005549\|Ga0070704_100773576	Not Available	856	Open in IMG/M
3300005617\|Ga0068859_101296829	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	802	Open in IMG/M
3300005719\|Ga0068861_100203085	All Organisms → cellular organisms → Bacteria	1665	Open in IMG/M
3300006194\|Ga0075427_10055356	Not Available	688	Open in IMG/M
3300006844\|Ga0075428_100228189	All Organisms → cellular organisms → Bacteria	2010	Open in IMG/M
3300006845\|Ga0075421_100051913	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5187	Open in IMG/M
3300006845\|Ga0075421_100973386	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	962	Open in IMG/M
3300006847\|Ga0075431_100009707	All Organisms → cellular organisms → Bacteria	9666	Open in IMG/M
3300006914\|Ga0075436_101453851	Not Available	520	Open in IMG/M
3300006969\|Ga0075419_10246228	All Organisms → cellular organisms → Bacteria	1194	Open in IMG/M
3300009094\|Ga0111539_10000985	All Organisms → cellular organisms → Bacteria	37321	Open in IMG/M
3300009098\|Ga0105245_12786143	Not Available	542	Open in IMG/M
3300009100\|Ga0075418_11763367	Not Available	673	Open in IMG/M
3300009100\|Ga0075418_12177186	Not Available	605	Open in IMG/M
3300009147\|Ga0114129_10042541	All Organisms → cellular organisms → Bacteria → Proteobacteria	6396	Open in IMG/M
3300009156\|Ga0111538_10009115	All Organisms → cellular organisms → Bacteria	13268	Open in IMG/M
3300009162\|Ga0075423_10554209	All Organisms → cellular organisms → Bacteria	1210	Open in IMG/M
3300009162\|Ga0075423_12378305	All Organisms → cellular organisms → Bacteria	577	Open in IMG/M
3300009176\|Ga0105242_11410690	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Alteromonas/Salinimonas group → Alteromonas → Alteromonas aestuariivivens	724	Open in IMG/M
3300009553\|Ga0105249_11101435	All Organisms → cellular organisms → Bacteria	864	Open in IMG/M
3300009609\|Ga0105347_1148518	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	915	Open in IMG/M
3300009678\|Ga0105252_10028220	All Organisms → cellular organisms → Bacteria → Proteobacteria	2042	Open in IMG/M
3300009789\|Ga0126307_10465904	Not Available	1019	Open in IMG/M
3300010036\|Ga0126305_10085293	All Organisms → cellular organisms → Bacteria	1868	Open in IMG/M
3300010371\|Ga0134125_11844556	Not Available	657	Open in IMG/M
3300010399\|Ga0134127_10234796	All Organisms → cellular organisms → Bacteria	1727	Open in IMG/M
3300011439\|Ga0137432_1059879	All Organisms → cellular organisms → Bacteria → Proteobacteria	1154	Open in IMG/M
3300012232\|Ga0137435_1126013	Not Available	777	Open in IMG/M
3300012892\|Ga0157294_10312757	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Alteromonas/Salinimonas group → Alteromonas → Alteromonas aestuariivivens	506	Open in IMG/M
3300012893\|Ga0157284_10221977	All Organisms → cellular organisms → Bacteria	581	Open in IMG/M
3300012903\|Ga0157289_10188653	Not Available	664	Open in IMG/M
3300012908\|Ga0157286_10066466	All Organisms → cellular organisms → Bacteria	973	Open in IMG/M
3300012912\|Ga0157306_10060527	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	984	Open in IMG/M
3300012916\|Ga0157310_10123178	Not Available	863	Open in IMG/M
3300013306\|Ga0163162_11653645	Not Available	731	Open in IMG/M
3300013308\|Ga0157375_10115047	All Organisms → cellular organisms → Bacteria	2793	Open in IMG/M
3300014326\|Ga0157380_10589122	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Pigmentiphaga → Pigmentiphaga litoralis	1098	Open in IMG/M
3300014745\|Ga0157377_10037550	All Organisms → cellular organisms → Bacteria	2669	Open in IMG/M
3300015077\|Ga0173483_10583292	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	612	Open in IMG/M
3300018083\|Ga0184628_10053461	All Organisms → cellular organisms → Bacteria	2041	Open in IMG/M
3300018476\|Ga0190274_12928852	Not Available	573	Open in IMG/M
3300019361\|Ga0173482_10372509	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4	654	Open in IMG/M
3300019361\|Ga0173482_10753752	Not Available	510	Open in IMG/M
3300022899\|Ga0247795_1045849	All Organisms → cellular organisms → Bacteria	730	Open in IMG/M
3300023263\|Ga0247800_1040592	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	823	Open in IMG/M
3300025795\|Ga0210114_1016324	All Organisms → cellular organisms → Bacteria → Proteobacteria	1614	Open in IMG/M
3300025899\|Ga0207642_10270468	All Organisms → cellular organisms → Bacteria	973	Open in IMG/M
3300025901\|Ga0207688_10110287	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1597	Open in IMG/M
3300025908\|Ga0207643_10212969	All Organisms → cellular organisms → Bacteria	1180	Open in IMG/M
3300025912\|Ga0207707_11327178	Not Available	577	Open in IMG/M
3300025918\|Ga0207662_10276919	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4	1109	Open in IMG/M
3300025923\|Ga0207681_10847479	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	764	Open in IMG/M
3300025925\|Ga0207650_11651698	Not Available	543	Open in IMG/M
3300025926\|Ga0207659_10134124	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1915	Open in IMG/M
3300025930\|Ga0207701_10213311	All Organisms → cellular organisms → Bacteria	1693	Open in IMG/M
3300025933\|Ga0207706_10700763	All Organisms → cellular organisms → Bacteria	865	Open in IMG/M
3300025934\|Ga0207686_11651546	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → Sphingobacteriaceae	529	Open in IMG/M
3300025935\|Ga0207709_11027923	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4	674	Open in IMG/M
3300025936\|Ga0207670_10263326	All Organisms → cellular organisms → Bacteria → Proteobacteria	1337	Open in IMG/M
3300025938\|Ga0207704_10273627	All Organisms → cellular organisms → Bacteria → Proteobacteria	1280	Open in IMG/M
3300025941\|Ga0207711_11052886	All Organisms → cellular organisms → Bacteria	754	Open in IMG/M
3300025945\|Ga0207679_10144485	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1928	Open in IMG/M
3300025960\|Ga0207651_10766764	All Organisms → cellular organisms → Bacteria	853	Open in IMG/M
3300025961\|Ga0207712_11418017	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Alteromonas/Salinimonas group → Alteromonas → Alteromonas aestuariivivens	622	Open in IMG/M
3300026067\|Ga0207678_10235106	All Organisms → cellular organisms → Bacteria	1569	Open in IMG/M
3300026089\|Ga0207648_10484162	All Organisms → cellular organisms → Bacteria → Proteobacteria	1130	Open in IMG/M
3300026095\|Ga0207676_10125843	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Paludibaculum → Paludibaculum fermentans	2170	Open in IMG/M
3300026118\|Ga0207675_100109413	All Organisms → cellular organisms → Bacteria	2607	Open in IMG/M
3300026118\|Ga0207675_100265445	All Organisms → cellular organisms → Bacteria	1665	Open in IMG/M
3300026121\|Ga0207683_10132113	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2246	Open in IMG/M
3300027513\|Ga0208685_1126862	Not Available	546	Open in IMG/M
3300027907\|Ga0207428_10000674	All Organisms → cellular organisms → Bacteria	39952	Open in IMG/M
3300027907\|Ga0207428_10025042	All Organisms → cellular organisms → Bacteria → Proteobacteria	4999	Open in IMG/M
3300027909\|Ga0209382_10005900	All Organisms → cellular organisms → Bacteria	15821	Open in IMG/M
3300027909\|Ga0209382_11122286	All Organisms → cellular organisms → Bacteria	810	Open in IMG/M
3300028809\|Ga0247824_10637466	All Organisms → cellular organisms → Bacteria	644	Open in IMG/M
3300028812\|Ga0247825_10296493	All Organisms → cellular organisms → Bacteria	1129	Open in IMG/M
3300031226\|Ga0307497_10137154	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1001	Open in IMG/M
3300031538\|Ga0310888_10044872	All Organisms → cellular organisms → Bacteria → Proteobacteria	2039	Open in IMG/M
3300031547\|Ga0310887_10079843	All Organisms → cellular organisms → Bacteria → Proteobacteria	1565	Open in IMG/M
3300031547\|Ga0310887_10090787	All Organisms → cellular organisms → Bacteria → Proteobacteria	1489	Open in IMG/M
3300031547\|Ga0310887_10489482	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4	739	Open in IMG/M
3300031562\|Ga0310886_10304607	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	911	Open in IMG/M
3300031847\|Ga0310907_10004605	All Organisms → cellular organisms → Bacteria	3884	Open in IMG/M
3300031847\|Ga0310907_10603265	Not Available	598	Open in IMG/M
3300031858\|Ga0310892_10392990	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4	901	Open in IMG/M
3300031913\|Ga0310891_10022816	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Pigmentiphaga → Pigmentiphaga litoralis	1578	Open in IMG/M
3300031913\|Ga0310891_10159946	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	736	Open in IMG/M
3300031943\|Ga0310885_10392549	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	737	Open in IMG/M
3300032000\|Ga0310903_10712906	Not Available	543	Open in IMG/M
3300032075\|Ga0310890_10066229	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Pigmentiphaga → Pigmentiphaga litoralis	2134	Open in IMG/M
3300032122\|Ga0310895_10159036	Not Available	983	Open in IMG/M
3300032211\|Ga0310896_10610436	Not Available	610	Open in IMG/M
3300034662\|Ga0314783_165472	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300034664\|Ga0314786_020529	All Organisms → cellular organisms → Bacteria	1055	Open in IMG/M
3300034678\|Ga0314803_071825	All Organisms → cellular organisms → Bacteria	636	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	52.67%
Host-Associated	Host-Associated	47.33%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	47.33%
Terrestrial	Environmental → Terrestrial	45.80%
Aquatic	Environmental → Aquatic	6.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	45.80%
Rhizosphere	Host-Associated → Plants → Rhizosphere	34.35%
Rhizoplane	Host-Associated → Plants → Rhizoplane	12.98%
Sediment	Environmental → Aquatic → Sediment	4.58%
Marine	Environmental → Aquatic → Marine	2.29%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	35.11%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	21.37%
Soil	Host-Associated → Plants → Rhizosphere → Soil	12.98%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	11.45%
Loam	Environmental → Terrestrial → Soil → Loam	10.69%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.58%
Wetlands	Environmental → Aquatic → Marine → Wetlands	2.29%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.53%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	21.37%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	15.27%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	12.98%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	12.21%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	11.45%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.92%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.34%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.58%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	2.29%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.29%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.53%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.76%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	15.27%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	13.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.40%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	6.11%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	5.34%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	4.58%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	3.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.82%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	3.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.05%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.05%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.05%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	3.05%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	2.29%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.29%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.53%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.53%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.53%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.53%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.53%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.53%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.53%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.53%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.76%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.76%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.76%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.76%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.76%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.76%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.76%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.76%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300003267	Sugarcane bulk soil Sample L1	Environmental	Open in IMG/M
3300003993	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D2	Environmental	Open in IMG/M
3300003999	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleA_D2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300006194	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009609	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890	Environmental	Open in IMG/M
3300009678	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100	Environmental	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011439	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT820_2	Environmental	Open in IMG/M
3300012232	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT100_2	Environmental	Open in IMG/M
3300012892	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1	Environmental	Open in IMG/M
3300012893	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S059-202B-1	Environmental	Open in IMG/M
3300012903	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S134-311R-1	Environmental	Open in IMG/M
3300012908	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1	Environmental	Open in IMG/M
3300012912	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2	Environmental	Open in IMG/M
3300012916	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S213-509R-2	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300022899	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S016-104C-6	Environmental	Open in IMG/M
3300023263	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S092-311B-6	Environmental	Open in IMG/M
3300025795	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027513	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890 (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028809	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031913	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D4	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300032000	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M
3300032211	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1	Environmental	Open in IMG/M
3300034662	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034664	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20R3 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034678	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48R4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F14TC_1000600922	3300000559	Soil	MTNKVLSLEMEHALGIFGLFLMLVIARLANRAYEPQQTAADRLTSFLARRVIDGIAAIGWAVDHLPAPSAPQYGRRTLHCAR*
JGI11643J12802_101440071	3300000890	Soil	MTNKVLSIEPENALGILGLFLMLVIARLAPRAYEPQETAADRLTSFLARRVIDGIAVIGWLADHLP
JGI10214J12806_103233063	3300000891	Soil	MTNKVLSIEMGHALGIFGLFLMLVIGRLANHAYEPQQTAADRLTSFLARRVIDGIAAIGWVVDHVPAPSAPH
soilL1_100417534	3300003267	Sugarcane Root And Bulk Soil	MLGILGLFLMLVIARLAPLAYEPQQTTTDRLTSFIARRVIDGIALIGWVADHLPVSVPHFGERTALRAR*
Ga0055468_100970262	3300003993	Natural And Restored Wetlands	MTNKVSTIGTGHAVGILGLFLMLVIARLAPRAYDPQQAAADRLISFLARRVIDGIAAMGWLADHLPASSAPHYGEPTLQRAR*
Ga0055469_100852211	3300003999	Natural And Restored Wetlands	MTNKVSTIGTGHAVGILGLFLMLVIARLAPRAYEPQPAAADRLISFLARRVIDGIAAMGWLADHLPASSAPHYGEPTLQRAR*
Ga0062593_1000082751	3300004114	Soil	MTNKVLSIEMGHALGIFGLFLMLVIARLSNHAYEPQQTAADRLTSFLARRVIDGIAAIGWVVDHVPAPSAPHYGVRTPQRAR*
Ga0062593_1001759531	3300004114	Soil	MTNKVLSIEPENALGILGLFLMLVIARLAPRAYEPQETAADRLTSFLARRVIDGIAVIGWLADHLPTPTAPHIGEPTLQRAR*
Ga0062593_1007034592	3300004114	Soil	MTNKVLSIEPEHALGILGLFLMLVIARLAPRAYEPQETAADRLTSFLARRVIDGIAAIGWLADHLPPSAPHIGEPTLQRAR*
Ga0063356_1000077924	3300004463	Arabidopsis Thaliana Rhizosphere	MTNKVLSIEMGHALGIFGLFLMLVIGRLANHAYEPQQTAADRLTSFLARRVIDGVAAIGWVVDHVPAPSAPHYGGRTLQRAR*
Ga0063356_1001913033	3300004463	Arabidopsis Thaliana Rhizosphere	MTNKVLSIEPENALGILGLFLMLVIARLAPRAYEPQQTTADRLGSFLARRVIDGIAAIGWLADHLPAPSAPHIGEPTLQRAR*
Ga0062592_1016072642	3300004480	Soil	MSKRLLSIETGNALGTLGLFLMLVIARLADHAYEAQETAADRLTSFLARRVIDGIAAIGWVVDHLPAAGPQYGERALERAR*
Ga0065707_100096681	3300005295	Switchgrass Rhizosphere	MTNKVLSIETGHALGIFGLFLMLVIGRLANHAYEPQQTAADRLTSFLARRVIDGIAAIGWVVDHVPAPSAPHYGGRTLQRAR*
Ga0070690_1001200133	3300005330	Switchgrass Rhizosphere	MTNKVLSIEMGQALGIFGLFLMLVIARLSNHAYEPQQTAADRLTSFLARRVIDGIAAIGWVVDHVPAPSAPHDGVRTPQRAR*
Ga0070670_1021847781	3300005331	Switchgrass Rhizosphere	MTNKVLSIEVDHALGIFGLFLMLVIANLANHAYEPQQIAADRLTSFLARRIIDGIAAIGWVVDHVPAPSAPHYG
Ga0070677_102791731	3300005333	Miscanthus Rhizosphere	MTNKVLSIEMGHALGIFGLFLMLVIVRLSTHAYEPQQTAADRLTSFLARRVIDGIAAIGWVVDHVPAPSAPHDGVRTPQRAR*
Ga0068869_1012000141	3300005334	Miscanthus Rhizosphere	MTNKVLSIEMGQALGIFGLFLMLVIARLSNHAYEPQQTAADRLTSFLARRVIDGIAAIGWVVDHVPAPSAPHYGVRTPQRAR*
Ga0070680_1014950471	3300005336	Corn Rhizosphere	MTIKVLSIEMEHALGIFGLFLMLVIARLAHHAYEPQQAAVDRLTSFLARRVIDGIAAIGWAVDHLPVPSAPDYGVRTLQRAR*
Ga0070689_1014647652	3300005340	Switchgrass Rhizosphere	MTNKVLSIEIGHALGIVGLFLMLVIARLSNHAYEPQQTAADRLTSFLARRVIDGIAAIGWVVDHVPAPSAPHYGVRTPQRAR*
Ga0070691_109230121	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MTSKVLSIEMEHALGIFGLFLMLVIARLAHHAYEPQQAAVDRLTSFLARRVIDGIAAIGWAVDHLPVPSAPDYGVRTLQRAR*
Ga0070687_1003542622	3300005343	Switchgrass Rhizosphere	MTNKVLSIEPEHALGILGLFLMLVIARLVPRAYEPQETAADRLTSFLARRVIDGIAAIGWLADHLPPSAPHIGEPTLQRAR*
Ga0070668_1020958922	3300005347	Switchgrass Rhizosphere	MTNKVLLIEMGQALGIFGLFLMLVIARLSNHAYEPQQTAADRLTSFLARRVIDGIAAIGWVVDHVPA
Ga0070669_1003230112	3300005353	Switchgrass Rhizosphere	MTNKVLSIEPEHALGILGLFLMLVIARLAPRAYEPQETAADRLTSFLARRVIDGIAAIGWLADHLPPSAPHIGE
Ga0070675_10000421110	3300005354	Miscanthus Rhizosphere	MTNKVLSIEPEHALGILGLFLMLVIARLAPRAYEPQETAADRLTSFLARRVIDGIAAIGWLADHLPAPSTPHIGEPTLQRAR*
Ga0070671_1007680842	3300005355	Switchgrass Rhizosphere	MTNKVLSIEMGQALGIFGLFLMLVIARLSNHAYEPQQTAADRLTSFLARRVIDGIAAIGWVVDHVPA
Ga0070671_1008621902	3300005355	Switchgrass Rhizosphere	KVLSIEPEHALGILGLFLMLVIARLAPRAYEPQETAADRLTSFLARRVIDGIAAIGWLADHLPPSAPHIGEPTLQRAR*
Ga0070674_1005610822	3300005356	Miscanthus Rhizosphere	MTNKVLSIEMGHALGIFGLFLMLVIVRLSTHAYEPQQTAADRLTSFLARRVIDGIAAIGWVVDHVPAPSAPHYGVRTPQRAR*
Ga0070705_1015959802	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MTNKVLSIEMGQALGIFGLFLMLVIARLANHAYEPQQTAADRLTSFLARRVIDGIAAIGWLVDHVPAPSAPHYGVRTPQRAR*
Ga0070700_1006388531	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MTNKDLSIEIGHALGIFGLFLMLVIARLSNHAYEPQQTAADRLTSFLARRVIDGIAAIGWVVDHVPAPSAPHYGVRTPQRAR*
Ga0070663_1008725712	3300005455	Corn Rhizosphere	MTNKVLSIEMGHALGIFGLFLMLVIARLSNHAYEPQQTAADRLTSFLARRVIDGIAAIGWLVDHVPAPSAPHYGVRTPQRAR*
Ga0070678_1022623282	3300005456	Miscanthus Rhizosphere	MTNKVLSIEMGQALGIFGLFLMLVIARLANHAYEPQQTAADRLTSFLARRVIDGIAAIGWVVDHVPAPSAPHYGVRTPQRAR*
Ga0070662_1002457582	3300005457	Corn Rhizosphere	MTNTVLSIEPGHALGILGLVLMLVIAKFAPRAYEPQRTSADRLTSFLARRVIDGIAAIGWLADHLPAPSTPHIGEPTLQRAR*
Ga0068867_1012384271	3300005459	Miscanthus Rhizosphere	MTNKVLSIEMGHALGIFGLFLMLVIARLSNHAYEPQQTAADRLTSFLARRVIDGIAAIGWVVDHVPAPSAPHDGVRTPQRAR*
Ga0070685_101729652	3300005466	Switchgrass Rhizosphere	MTNKVLSIEMGQALGIFGLFLMLVIARLSNHAYEPQQTAADRLTSFLARRVIDGIAAIGWVVDHVPAPSAPHDGARTLQRAR*
Ga0070685_108806921	3300005466	Switchgrass Rhizosphere	MTNKVLSIEPEHALGILGLFLMLVIARLAPRAYEPQETAADRLTSFLARRVIDGIAAIGWLADHLPPSA
Ga0070704_1007735762	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MTNTVLSIEPGHALGILGLVLMLVIAKFAPRAYEPQRTSADRLTSFLARRVIDGIAAIGWLADHLPPSAPHIGEPTLQRAR*
Ga0068859_1012968292	3300005617	Switchgrass Rhizosphere	MTNKVLSIEMGQALGIFGLFLMLVIARLSNHAYEPQQTAADRLTSFLARRVIDGIAAIGWVVDHVPAPSTPHYGVRTPQRAR*
Ga0068861_1002030852	3300005719	Switchgrass Rhizosphere	MTNTVLSIEPGHALGILGLVLMLVIAKLAPRAYEPQRTSADRLTSFLARRVIDGIAAIGWLADHLPAPSTPHIGEPTLQRAR*
Ga0075427_100553562	3300006194	Populus Rhizosphere	MTNKVLSIEMGHGLGIFGLFLMLVIARLANHAYEPQQTAADRLTSFLARRVIDGIAAIGWVVDHVPAPSAPHDGGRTLQRAR*
Ga0075428_1002281892	3300006844	Populus Rhizosphere	MSNRLHSIKTGNALGVLGLFLMLVIARLANHAYELQQSSGDRLTSFLARRVIDGIAAIGWVADHLPAPSAPHFGERTLQRAR*
Ga0075421_1000519133	3300006845	Populus Rhizosphere	MSNRLLSLGTGNALGVIGLFLMLVIARLANHAYELQQSSGDRLTSFLARRVIDGIAAIGWVADHLPAPSAPHFGERTLQRAR*
Ga0075421_1009733862	3300006845	Populus Rhizosphere	MTNKVLSIEMGHALGIFGLFLMLVIARLADRAYEPQQTVADRLTSFLARRAIDVVAAIGWVVDHVPAPSAPHYGVRTLQRAR*
Ga0075431_1000097077	3300006847	Populus Rhizosphere	MSNRLHSIKTGNALGVLGLFLMLVIARLANHAYEPQQSSGDRLTSFLARRVIDGVAAIGWVADHLPAPSAPHFGERTLQRAR*
Ga0075436_1014538512	3300006914	Populus Rhizosphere	MTNKVLSIEPEHALGILGLFLMLVIARLAPRAYEPQETAADRLTSFLARRVIDGIAAIGWLADHLPPS
Ga0075419_102462281	3300006969	Populus Rhizosphere	EHALGILGLFLMLVIARLVPRAYEPQETAADRLTSFLARRVIDGIAAIGWLADHLPPSAPHIGEPTLQRAR*
Ga0111539_100009859	3300009094	Populus Rhizosphere	MSNRLRSIETENALGTLGLFLMLVIARLASHAYEPARTFADRLTSFLARRVIDGIAVIGWVVDHVPAPWLAPCVERSLQRAR*
Ga0105245_127861432	3300009098	Miscanthus Rhizosphere	MTNKVLSIEMGHALGIFGLFLMLVIARLSNHAYEPQQTAADRLTSFLARRVIDGIAAIGWVVDHVPAPSTPHYGVRT
Ga0075418_117633672	3300009100	Populus Rhizosphere	MVMSNRLLSLGTGNALGVIGLFLMLVIARLANHAYELQQSSGDRLTSFLARRVIDGIAAIGWVADHLPAPSAPHFGERTLQRAR*
Ga0075418_121771861	3300009100	Populus Rhizosphere	MSNRLLSIETGTLGMLGLFLMLVIARLANHAYEAQGTVADRLTSFLARRAIDGIAAIGWVADHLPAAGPQYGQRALER
Ga0114129_100425412	3300009147	Populus Rhizosphere	MTNKVLSIEMGHGLGIFGLFLMLVIARLANHAYEPQPTAADRLTSFLARRVIDGIAAIGWVVDHVPAPSAPHDGGRTLQRAR*
Ga0111538_100091159	3300009156	Populus Rhizosphere	MTNKVLSIEMGHGLGIFGLFLMLVIARLANHAYEPQQTAADRLTSFLSRRVIDGIAAIGWVVDHVPAPSAPHDGGRTLQRAR*
Ga0075423_105542092	3300009162	Populus Rhizosphere	MTNNVLSIEPEHALGILGLFLMLVIARLAPRAYEPQETAADRLTSFLARRVIDGIAAIGWLADHLPPSAPHIGEPTLQRAR*
Ga0075423_123783052	3300009162	Populus Rhizosphere	MTNTVLSIEPGHALGILGLVLMLVIAKLAPHAYEPQRTSADRLTSFLARRVIDGIAAIGWLADHLPAPSTPHIGEPTLQRAR*
Ga0105242_114106902	3300009176	Miscanthus Rhizosphere	MTNKVLSIEMGHALGIFGLFLMLVIASLSNHAFEPQQTAADRLTSFLARRVIDGIAAIGWVVDHVPAQSAPHDGVRTLQRAR*
Ga0105249_111014352	3300009553	Switchgrass Rhizosphere	MTNRVLSIEMGQALGIFGLFLMLVIARLSNHAYEPQQTAADRLTSFLARRVIDGIAAIGWVVDHVPAPSAPHYGVRTPQRAR*
Ga0105347_11485182	3300009609	Soil	MTNKVLSIEMGHALGIFGLFLMLVIASLANHAYEPQPTAADRLTSFLARRVIDGIAAIGWVVDHVPAPSAPHDGVRTLQRAR*
Ga0105252_100282202	3300009678	Soil	MTNKVLSIEMGHALGIFGLFLMLVIASLANHAYEPQPTAADRLTSFLARRVIDGIAAIGWVVDHVPAPSAPHDGARTLQRAR*
Ga0126307_104659042	3300009789	Serpentine Soil	MTNKVLSNDMGHVLGRLGLFLMLVIAHLANRAYEPQQSAADRLTSFLARRVIDGIAAIGWAVDRVPAPSAPHYRGRTLQRAR*
Ga0126305_100852932	3300010036	Serpentine Soil	MTNKVLSNDMGHVLGRLGLFLMLVIAHLANRAYEPQQSAADRLTSFLARRVIDGIAAIGWAVDHVPAPSAPHYRARTLQRAR*
Ga0134125_118445561	3300010371	Terrestrial Soil	MTNTVLSIEPGHALGILGLFLMLVIARLAPRAYEPQRTSADRLTSFLARRVIDGIAAIGWLADHLPAPSTPHIGEPTLQRAR*
Ga0134127_102347962	3300010399	Terrestrial Soil	MTSKVLSIEMEHALGIFGLFLMLVIARLANHAYEPQHTAVDWLTSFLARRVIDGIAAIGWAVDHLPVPSAPDYGVRTLQRAR*
Ga0137432_10598792	3300011439	Soil	MTNKVLSIEMGHALGIFGLFLMLVIASLANHAYEPQQTAADRLTSFLARRVIDGIAAIGWVVDHVPAPSAPHYGTRTLQRAR*
Ga0137435_11260132	3300012232	Soil	MTNKVLSIEMGHALGIFGLFLMLVIASLANHAYEPQPTAADRLTSFLARRVIDGIAAIGWVVDHVPAPSAPHYGVRTLQRAR*
Ga0157294_103127572	3300012892	Soil	MTNKVLSIEMGHALGIFGLFLMLVIARLSNHAYEPQQTAADRLTSFLARRVIDGIAAIGWLVDHVPAPSTPHYGVRTPQRAR*
Ga0157284_102219771	3300012893	Soil	MTNKVLSIEMGHALGIFGLFLMLVIARLSNHAYEPQQTAADRLTSFLARRVIDGIAAIGWVVDHVPAPSTPHYGVRTPQRAR*
Ga0157289_101886531	3300012903	Soil	MTNKVLLIEMGQALGIFGLFLMLVIARLSNHAYEPQQTAADRLTSFLARRVIDGIAAIGWLVDHVPAPSTPHYGVRTPQRAR*
Ga0157286_100664662	3300012908	Soil	MTNKVLSIEMGHALGIFGLFLMLVIARLSNHAYEPQQTAADRLTSVLARRVIDGIAAIGWVVDHVPAQSAPHDGVRTLQRAR*
Ga0157306_100605271	3300012912	Soil	MTNKVLSIEMGHALGIFGLFLMLVIARLSNHAYEPQQTAADRLTSFLARRVIDGIAAIGWVVDHVTAPSTPHYGVRTPQRAR*
Ga0157310_101231781	3300012916	Soil	KVLSIEMGHALGIFGLFLMLVIARLSNHAYEPQQTAADRLTSFLARRVIDGIAAIGWVVDHVPAPSAPHYGVRTPQRAR*
Ga0163162_116536451	3300013306	Switchgrass Rhizosphere	MTNKVLSIEPEHALGILGLFLTLVIARLAPRAYEPQETAADRLTSFLARRVIDGIAAIGWLADHLPPSAPHIGEPTLQRAR*
Ga0157375_101150472	3300013308	Miscanthus Rhizosphere	MTNKVLSIEMGEALGIFGLFLMLVIARLSNHAYEPQQTAADRLTSFLARRVIDGIAAIGWVVDHVPAPSTPHYGVRTPQRAR*
Ga0157380_105891221	3300014326	Switchgrass Rhizosphere	MTNKVLLIEMGQALGIFGLFLMLVIARLSNHAYEPQQTAADRLTSFLARRVIDGIAAIGWVVDHVPAPS
Ga0157377_100375504	3300014745	Miscanthus Rhizosphere	MTNKVLLIEMGQALGIFGLFLMLVIARLSNHAYEPQQTAADRLTSFLARRVIDGIAAIGWVVDHVPAPSAPHYGVRTPQRAR*
Ga0173483_105832922	3300015077	Soil	MTNKVLSIEMGHALGIFGLFLMLVIARLSNHAYEPQQTAADRLTSFLARRVIDGIAAIGWVVDHVPAPSAPH
Ga0184628_100534612	3300018083	Groundwater Sediment	MTNKVLSIEMGHALGIFGLFLMLVIASLANHAYEPQPTAADRLTSFLARRVIDGIAAIGWVVDHVPAPSAPHDGVRTLQRAR
Ga0190274_129288521	3300018476	Soil	MTNKVLSIEVGHALGIVGLFLMLAIARLSHHAYEPQQTPADRLTSFLARRLIDGIAAIGWVVDHVPAPSPHYGARTLQRAR
Ga0173482_103725092	3300019361	Soil	ALGILGLFLMLVIARLAPRAYEPQETAADRLTSFLARRVIDGIAAIGWLADHLPPSAPHIGEPTLQRAR
Ga0173482_107537521	3300019361	Soil	MTNKVLSIEMSHALGIFGLFLMLVIARLSNHAYEPQQIAADRLTSFLARRIIDGIAAIGWVVDHVPAPSAPHDGVRTPQRAR
Ga0247795_10458491	3300022899	Soil	MTNKVLSIEMGHALGIFGLFLMLVIVRLSTHAYEPQQTAADRLTSFLARRVIDGIAAIGWVVDHVPAPSAPHYGVRTPQRAR
Ga0247800_10405921	3300023263	Soil	MTNKVLSIEMGHALGIFGLFLMLVIARLSNHAYEPQQTAADRLTSFLARRVIDGIAAIGWVVDHVPAPSTPHYGVRTP
Ga0210114_10163242	3300025795	Natural And Restored Wetlands	MTNKVSTIGTGHAVGILGLFLMLVIARLAPRAYEPQQAAADRLISFLARRVIDGIAAMGWLADHLPASSAPHYGEPTLQRAR
Ga0207642_102704682	3300025899	Miscanthus Rhizosphere	MTSKVLSIEMEHALGIFGLFLMLVIARLANHAYEPQQTAADRLTSFLARRVIDGIAAIGWVVDHVPAPSAPHDGVRTPQRAR
Ga0207688_101102871	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	LGILGLVLMLVIAKFAPRAYEPQRTSADRLTSFLARRVIDGIAAIGWLADHLPAPSTPHIGEPTLQRAR
Ga0207643_102129692	3300025908	Miscanthus Rhizosphere	MTNKVLSIEVDHALGIFGLFLMLVIARLSNHAYEPQQTAADRLTSFLARRVIDGIAAIGWVVDHVPAPSAPHYGGRTLQRAR
Ga0207707_113271782	3300025912	Corn Rhizosphere	MTNTVLSIEPGHALGILGLVLMLVIAKFAPRAYEPQRTSADRLTSFLARRVIDGIAAIGWLADHLPAPSTPHIGEPTLQRAR
Ga0207662_102769192	3300025918	Switchgrass Rhizosphere	MTNKVLSIEMGQALGIFGLFLMLVIARLSNHAYEPQQTAADRLTSFLARRVIDGIAAIGWVVDHVPAPSAPHYGVRTPQRAR
Ga0207681_108474792	3300025923	Switchgrass Rhizosphere	MTNKVLSIEMGQALGIFGLFLMLVIARLSNHAYEPQQTAADRLTSFLARRVIDGIAAIGWVVDHVPAPSAP
Ga0207650_116516982	3300025925	Switchgrass Rhizosphere	MTNKVLSIEPEHALGILGLFLMLVIARLAPRAYEPQETAADRLTSFLARRVIDGIAAIGWLADHLPPSAPHIGEPTLQRAR
Ga0207659_101341244	3300025926	Miscanthus Rhizosphere	DLSIEIGHALGIFGLFLMLVIARLSNHAYEPQQTAADRLTSFLARRVIDGIAAIGWVVDHVPAPSAPHYGVRTPQRAR
Ga0207701_102133113	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MTNKVLSIEMGHALGIFGLFLMLVIANFANHAYEPQQTAADRLTSFLARRVIDGIAAIGWVVDHVPAPSAPHDGVRTPQRAR
Ga0207706_107007632	3300025933	Corn Rhizosphere	MTNKVLLIEMGQALGIFGLFLMLVIARLSNHAYEPQQTAADRLTSFLARRVIDGIAAIGWVVDHVPAPSAPHDGVRTPQRAR
Ga0207686_116515461	3300025934	Miscanthus Rhizosphere	GIFGLFLMLVIASLSNHAFEPQQTAADRLTSFLARRVIDGIAAIGWAVDHLPVPSAPDYGVRTLQRAR
Ga0207709_110279232	3300025935	Miscanthus Rhizosphere	GILGLVLMSVIAKFAPRAYEPQRTSADRLTSFLARRVIDGIAAIGWLADHLPAPSTPHIGEPTLQRAR
Ga0207670_102633262	3300025936	Switchgrass Rhizosphere	MTNKVLSIEMGQALGIFGLFLMLVIARLSNHAYEPQQTAADRLTSFLARRIIDGIAAIGWVVDHVPAPSAPHDGARTLQRAR
Ga0207704_102736273	3300025938	Miscanthus Rhizosphere	MTNKVLSIEMGHALGIFGLFLMLVIVRLSTHAYEPQQTAADRLTSFLARRVIDGIAAIGWVVDHVPAPSAPHDGVRTPQRAR
Ga0207711_110528861	3300025941	Switchgrass Rhizosphere	QALGIFGLFLMLVIARLSNHAYEPQQTAADRLTSFLARRVIDGIAAIGWVVDHVPAPSTPHYGVRTPQRAR
Ga0207679_101444851	3300025945	Corn Rhizosphere	MTNKVLSIEPENALGILGLFLMLVIARLAPRAYEPQETAADRLTSFLARRVIDGIAVIGWLADHLPTPTAPHIGEPTLQRAR
Ga0207651_107667642	3300025960	Switchgrass Rhizosphere	MTNKVLSIEMGQALGIFGLFLMLVIARLSNHAYEPQQTAADRLTSFLARRVIDGIAAIGWVVDHVPAPSTPHYGVRTPQRAR
Ga0207712_114180171	3300025961	Switchgrass Rhizosphere	MTNRVLSIEMGQALGIFGLFLMLVIARLSNHAYEPQQTAADRLTSFLARRVIDGIAAIGWVVDHVPAPSAPHYGVRTPQRAR
Ga0207678_102351062	3300026067	Corn Rhizosphere	MTNKVLSIEMGHALGIFGLFLMLVIARLSNHAYEPQQTAADRLTSFLARRVIDGIAAIGWVVDHVPAPSAPHYGVRTPQRAR
Ga0207648_104841622	3300026089	Miscanthus Rhizosphere	MTNKVLSIEMGQALGIFGLFLMLVIARLSNHAYEPQQTAADRLTSFLARRVIDGIAAIGWVVDHVPAPSAPHDGVRTPQRAR
Ga0207676_101258434	3300026095	Switchgrass Rhizosphere	PENALGILGLFLMLVIARLAPRAYEPQETAADRLTSFLARRVIDGIAAIGWLADHLPPSAPHIGEPTLQRAR
Ga0207675_1001094134	3300026118	Switchgrass Rhizosphere	MTNTVLSIEPGHALGILGLVLMLVIAKLAPRAYEPQRTSADRLTSFLARRVIDGIAAIGWLADHLPAPSTPHIGEPTLQRAR
Ga0207675_1002654452	3300026118	Switchgrass Rhizosphere	MTNKVLSIEMGHALGIFGLFLMLVIVRLSTHAYEPQQTAADRLTSFLARRVIDGIAAIGWVVDHVPAPSAPHDGARTLQRAR
Ga0207683_101321132	3300026121	Miscanthus Rhizosphere	MTNKVLLIEMGQALGIFGLFLMLVIARLANHAYEPQQTAADRLTSFLARRVIDGIAAIGWVVDHVPAPSAPHYGVRTPQRAR
Ga0208685_11268622	3300027513	Soil	MTNKVLSIEMGHALGIFGLFLMLVIASLANHAYEPQPTAADRLTSFLARRVIDGIAAIGWVVDHVPAPSAPHDGVR
Ga0207428_1000067426	3300027907	Populus Rhizosphere	MSNRLRSIETENALGTLGLFLMLVIARLASHAYEPARTFADRLTSFLARRVIDGIAVIGWVVDHVPAPWLAPCVERSLQRAR
Ga0207428_100250425	3300027907	Populus Rhizosphere	MTNKVLSIEMGHGLGIFGLFLMLVIARLANHAYEPQQTAADRLTSFLSRRVIDGIAAIGWVVDHVPAPSAPHDGGRTLQRAR
Ga0209382_100059007	3300027909	Populus Rhizosphere	MSNRLLSLGTGNALGVIGLFLMLVIARLANHAYELQQSSGDRLTSFLARRVIDGIAAIGWVADHLPAPSAPHFGERTLQRAR
Ga0209382_111222862	3300027909	Populus Rhizosphere	MTNKVLSIEMGHALGIFGLFLMLVIARLADRAYEPQQTVADRLTSFLARRAIDVVAAIGWVVDHVPAPSAPHYGVRTLQRAR
Ga0247824_106374662	3300028809	Soil	PGHALGILGLVLMLVIAKLAPRAYEPQRTSADRLTSFLARRVIDGIAAIGWLADHLPAPSTPHIGEPTLQRAR
Ga0247825_102964933	3300028812	Soil	MTNKILSIEMEHALGMLGLFLMLVVARLSNHAYEPQQAAVDRLTSFLARRVIDGVAAIGWVVDHVPAPSAPHYGARTLQRAR
Ga0307497_101371541	3300031226	Soil	MTNKVLSIEMGHALGIFGLFLMLVIVRLSTHAYEPQQTAADRLTSFLARRIIDGIAAIGWLVDHVPAPSASHDGGRTLQRAR
Ga0310888_100448723	3300031538	Soil	MTNTVLSIEPGHALGILGLVLMLVIAKFAPRAYEPQRTSADRLTSFLARRVIDGIAAIGWLADHLPPSAPHIGEPTLQRAR
Ga0310887_100798432	3300031547	Soil	MTNKVLFLEMGHVLGTLGLFLMLVIARLAHVAYEPQQTTADRLTSLVARRVIDGIAAIGWVADHLPAPSALHDAAHVLQRAR
Ga0310887_100907872	3300031547	Soil	MTNKVLSIEMGHGLGIFGLFLMLVIARLANHAYEPQQTAADRLTSFLARRVIDGIAAIGWVVDHVPAPSAPHYGVRTLQRAR
Ga0310887_104894821	3300031547	Soil	SIEPEHALGILGLFLMLVIARLAPRAYEPQETAADRLTSFLARRVIDGIAAIGWLADHLPPSAPHIGEPTLQRAR
Ga0310886_103046071	3300031562	Soil	MTNKVLSIEMGHGLGIFGLFLMLVIARLANHAYEPQQTAADRLTSFLARRVIDGIAAIGWVVDHVPAPSAPHYG
Ga0310907_100046054	3300031847	Soil	MTNKVLSIEMGHWLGIFGLFLMLVIARLANHAYEPQQTAADRLTSFLARRVIDGIAAIGWVVDHVPAPSAPHYGVRTLQRAR
Ga0310907_106032652	3300031847	Soil	MSNRLLSIETGNALGMLGLFLMLVIARLANHAYEAQETVADRLTSFLARRAIDGIAAIGWVADHLPAAGPQYGQRALERAR
Ga0310892_103929902	3300031858	Soil	MTNKVLSLEMGHVLGTLGLFLMLVIARLAHVAYEPQQTTADRLTSLVARRVIDGIAAIGWVADHLPAPSALHDAAHVLQRAR
Ga0310891_100228162	3300031913	Soil	MTNKVLSIEMGHWLGIFGLFLMLVIGRLANHAYEPQQTAADRLTSFLARRVIDGIAAIGWVVDHVPAPSAPHYGG
Ga0310891_101599461	3300031913	Soil	MTNTVLSIEPGHALGILGLVLMLVIAKFAPRAYEPQRTSADRLTSFLARRVIDGIAAIGWLADHLPVPSTPHIGEPTLQR
Ga0310885_103925492	3300031943	Soil	MTNKVLSIEMGHALGIFGLFLMLVIVRLSTHAYEPQQTAADRLTSFLARRVIDGIAAIGWVVDHVPAPSAPHDGVR
Ga0310903_107129061	3300032000	Soil	MTNKVLSIEVDHALGIFGLFLMLVIARLANHAYEPQQTAADRLTSFLARRVIDGIAAIGWVVDHVPAPSAPHYGVRTLQRAR
Ga0310890_100662293	3300032075	Soil	MTNKVLFLEMGHVLGTLGLFLMLVIARLAHVAYEPQQTTADRLTSLLARRVIDGIAAIGWVADHLPAPSALHDAAHVLQRAR
Ga0310895_101590362	3300032122	Soil	MTNKVLFLEMGHVLGTLGLFLMLVIARLAHVANEPQQTTADRLTSLVARRVIDGIAAIGWVADHLPAPSALHDAAHVLQRAR
Ga0310896_106104362	3300032211	Soil	MTNKVLSIEMGHALGIFGLFLMLVIVRLSTHAYEPQQTAADRLTSFLARRIIDGIAAIGWVVDHVPAPSAPHDGARTLQRAR
Ga0314783_165472_269_517	3300034662	Soil	MTNKVLSIEMGHGLGIFGLFLMLVIARLANHAYEPQQTAADRLTSFLARRVIDGIAAIGWVVDHVPAPSAPHDGVRTPQRAR
Ga0314786_020529_790_1038	3300034664	Soil	MTNKVLSIEMGHALGIFGLFLMLVIVRLSTHAYEPQQTAADRLTSFLARRVIDGVAAIGWVVDHVPAPSAPHYGVRTLQRAR
Ga0314803_071825_400_621	3300034678	Soil	MGHGLGIFGLFLMLVIARLANHAYEPQQTAADRLTSFLARRVIDGIAAIGWVVDHVPAPSAPHYRVRTPQRAR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F061968

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences