Metagenome / Metatranscriptome Family F061957

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F061957
Family Type	Metagenome / Metatranscriptome
Number of Sequences	131
Average Sequence Length	49 residues
Representative Sequence	MRMPILTYFLVVGVILFGGMRLVSSQLEAKPLPVSQRIGVPAPFKAPPDATR
Number of Associated Samples	86
Number of Associated Scaffolds	131

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	89.92 %
% of genes near scaffold ends (potentially truncated)	51.15 %
% of genes from short scaffolds (< 2000 bps)	82.44 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (51.908 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (25.954 % of family members)
Environment Ontology (ENVO)	Unclassified (34.351 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (47.328 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 32.50% β-sheet: 0.00% Coil/Unstructured: 67.50%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 131 Family Scaffolds
PF01546	Peptidase_M20	4.58
PF08238	Sel1	2.29
PF00353	HemolysinCabind	1.53
PF00440	TetR_N	1.53
PF09209	CecR_C	1.53
PF04116	FA_hydroxylase	0.76
PF04073	tRNA_edit	0.76
PF04311	DUF459	0.76
PF05638	T6SS_HCP	0.76
PF00589	Phage_integrase	0.76
PF05656	DUF805	0.76
PF02586	SRAP	0.76
PF13545	HTH_Crp_2	0.76
PF07784	DUF1622	0.76
PF03449	GreA_GreB_N	0.76
PF05239	PRC	0.76
PF04392	ABC_sub_bind	0.76
PF13458	Peripla_BP_6	0.76
PF00188	CAP	0.76
PF05532	CsbD	0.76

COG ID	Name	Functional Category	% Frequency in 131 Family Scaffolds
COG0782	Transcription elongation factor, GreA/GreB family	Transcription [K]	0.76
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	0.76
COG2340	Spore germination protein YkwD and related proteins with CAP (CSP/antigen 5/PR1) domain	Cell cycle control, cell division, chromosome partitioning [D]	0.76
COG2845	Peptidoglycan O-acetyltransferase, SGNH hydrolase family	Cell wall/membrane/envelope biogenesis [M]	0.76
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.76
COG3000	Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily	Lipid transport and metabolism [I]	0.76
COG3152	Uncharacterized membrane protein YhaH, DUF805 family	Function unknown [S]	0.76
COG3157	Type VI protein secretion system component Hcp (secreted cytotoxin)	Intracellular trafficking, secretion, and vesicular transport [U]	0.76
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	0.76
COG4828	Uncharacterized membrane protein	Function unknown [S]	0.76

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.91 %
All Organisms	root	All Organisms	48.09 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.91 %
cellular organisms	root	All Organisms → cellular organisms	48.09 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.91 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	48.09 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.91 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	42.75 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.91 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	39.69 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.76 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.91 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	32.82 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	0.76 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.76 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.91 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	12.98 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	1.53 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.76 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	0.76 %
unclassified Spartobacteria	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria	0.76 %
Syntrophobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.91 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.29 %
Methylorubrum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylorubrum	1.53 %
Spartobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	0.76 %
Pseudolabrys	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys	0.76 %
Syntrophobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophobacteraceae	0.76 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.91 %
Methylorubrum extorquens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylorubrum → Methylorubrum extorquens	1.53 %
unclassified Pseudolabrys	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys	0.76 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.76 %
Syntrophobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophobacteraceae → Syntrophobacter	0.76 %
Spartobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	0.76 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.91 %
Methylorubrum extorquens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylorubrum → Methylorubrum extorquens	1.53 %
Pseudolabrys sp. Root1462	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	0.76 %
Syntrophobacter fumaroxidans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophobacteraceae → Syntrophobacter → Syntrophobacter fumaroxidans	0.76 %
Bradyrhizobium sp. ORS 285	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. ORS 285	0.76 %
Spartobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	0.76 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.91 %
Methylorubrum extorquens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylorubrum → Methylorubrum extorquens	1.53 %
Syntrophobacter fumaroxidans MPOB	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophobacteraceae → Syntrophobacter → Syntrophobacter fumaroxidans → Syntrophobacter fumaroxidans MPOB	0.76 %
Pseudolabrys sp. Root1462	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	0.76 %
Bradyrhizobium sp. ORS 285	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. ORS 285	0.76 %
Spartobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	0.76 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.76 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2228664021\|ICCgaii200_c0701010	Not Available	771	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c0710074	Not Available	1425	Open in IMG/M
3300001431\|F14TB_101046375	Not Available	2057	Open in IMG/M
3300003911\|JGI25405J52794_10086470	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	692	Open in IMG/M
3300004479\|Ga0062595_100367365	Not Available	1012	Open in IMG/M
3300005093\|Ga0062594_101855396	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	637	Open in IMG/M
3300005290\|Ga0065712_10108863	All Organisms → cellular organisms → Bacteria	1857	Open in IMG/M
3300005294\|Ga0065705_10327932	Not Available	997	Open in IMG/M
3300005294\|Ga0065705_10680839	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	662	Open in IMG/M
3300005295\|Ga0065707_10616599	Not Available	681	Open in IMG/M
3300005332\|Ga0066388_100186461	All Organisms → cellular organisms → Bacteria	2687	Open in IMG/M
3300005332\|Ga0066388_103759993	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	774	Open in IMG/M
3300005332\|Ga0066388_104565520	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	705	Open in IMG/M
3300005332\|Ga0066388_104812883	Not Available	687	Open in IMG/M
3300005341\|Ga0070691_10495855	Not Available	705	Open in IMG/M
3300005341\|Ga0070691_10819611	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. ORS 285	568	Open in IMG/M
3300005354\|Ga0070675_100577769	Not Available	1018	Open in IMG/M
3300005441\|Ga0070700_100036070	All Organisms → cellular organisms → Bacteria	2997	Open in IMG/M
3300005614\|Ga0068856_101593727	Not Available	666	Open in IMG/M
3300005713\|Ga0066905_100052056	Not Available	2514	Open in IMG/M
3300005713\|Ga0066905_100084299	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2100	Open in IMG/M
3300005713\|Ga0066905_100167492	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1604	Open in IMG/M
3300005713\|Ga0066905_100187906	Not Available	1531	Open in IMG/M
3300005713\|Ga0066905_100597523	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	933	Open in IMG/M
3300005713\|Ga0066905_101532899	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	608	Open in IMG/M
3300005713\|Ga0066905_102074725	Not Available	528	Open in IMG/M
3300005764\|Ga0066903_100404145	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	2249	Open in IMG/M
3300005764\|Ga0066903_100544998	Not Available	1986	Open in IMG/M
3300005764\|Ga0066903_100723383	Not Available	1761	Open in IMG/M
3300005764\|Ga0066903_100948673	Not Available	1564	Open in IMG/M
3300005764\|Ga0066903_102326213	Not Available	1035	Open in IMG/M
3300005764\|Ga0066903_103650348	Not Available	828	Open in IMG/M
3300005764\|Ga0066903_105149303	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	692	Open in IMG/M
3300005764\|Ga0066903_108232856	Not Available	533	Open in IMG/M
3300005937\|Ga0081455_10003771	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	17302	Open in IMG/M
3300005937\|Ga0081455_10216958	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1421	Open in IMG/M
3300005937\|Ga0081455_10332543	Not Available	1078	Open in IMG/M
3300005937\|Ga0081455_10785675	Not Available	599	Open in IMG/M
3300006049\|Ga0075417_10040542	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1973	Open in IMG/M
3300006049\|Ga0075417_10058229	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1685	Open in IMG/M
3300006196\|Ga0075422_10309703	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	679	Open in IMG/M
3300006196\|Ga0075422_10337838	Not Available	654	Open in IMG/M
3300006755\|Ga0079222_11429984	Not Available	642	Open in IMG/M
3300006844\|Ga0075428_101005153	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	883	Open in IMG/M
3300006844\|Ga0075428_102710038	Not Available	505	Open in IMG/M
3300006845\|Ga0075421_100510731	Not Available	1426	Open in IMG/M
3300006845\|Ga0075421_101671393	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	690	Open in IMG/M
3300006852\|Ga0075433_10195037	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1801	Open in IMG/M
3300006854\|Ga0075425_100676597	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1185	Open in IMG/M
3300006871\|Ga0075434_100373112	Not Available	1447	Open in IMG/M
3300006880\|Ga0075429_100092841	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2632	Open in IMG/M
3300006903\|Ga0075426_10926764	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	657	Open in IMG/M
3300006904\|Ga0075424_101036270	Not Available	875	Open in IMG/M
3300006904\|Ga0075424_102826401	Not Available	505	Open in IMG/M
3300006914\|Ga0075436_100743986	Not Available	728	Open in IMG/M
3300007076\|Ga0075435_100109635	Not Available	2295	Open in IMG/M
3300007076\|Ga0075435_101301237	Not Available	637	Open in IMG/M
3300009092\|Ga0105250_10608876	Not Available	507	Open in IMG/M
3300009094\|Ga0111539_10077767	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3904	Open in IMG/M
3300009094\|Ga0111539_11178232	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	890	Open in IMG/M
3300009100\|Ga0075418_10221659	Not Available	2013	Open in IMG/M
3300009100\|Ga0075418_11767684	Not Available	672	Open in IMG/M
3300009147\|Ga0114129_11849036	Not Available	733	Open in IMG/M
3300009156\|Ga0111538_12889119	Not Available	601	Open in IMG/M
3300009162\|Ga0075423_12144938	Not Available	606	Open in IMG/M
3300009551\|Ga0105238_12720005	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	531	Open in IMG/M
3300010043\|Ga0126380_10000601	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	12313	Open in IMG/M
3300010043\|Ga0126380_10401045	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1019	Open in IMG/M
3300010046\|Ga0126384_11917858	Not Available	565	Open in IMG/M
3300010047\|Ga0126382_10427166	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1043	Open in IMG/M
3300010047\|Ga0126382_12351901	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	516	Open in IMG/M
3300010047\|Ga0126382_12498303	Not Available	504	Open in IMG/M
3300010358\|Ga0126370_10531934	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1000	Open in IMG/M
3300010358\|Ga0126370_12062626	Not Available	559	Open in IMG/M
3300010359\|Ga0126376_10029524	All Organisms → cellular organisms → Bacteria → Proteobacteria	3689	Open in IMG/M
3300010359\|Ga0126376_11999191	Not Available	621	Open in IMG/M
3300010360\|Ga0126372_10390061	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1266	Open in IMG/M
3300010360\|Ga0126372_11140947	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	800	Open in IMG/M
3300010361\|Ga0126378_10283782	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1756	Open in IMG/M
3300010362\|Ga0126377_11437198	Not Available	763	Open in IMG/M
3300010371\|Ga0134125_11167791	Not Available	842	Open in IMG/M
3300010376\|Ga0126381_101247204	Not Available	1074	Open in IMG/M
3300010397\|Ga0134124_12398511	Not Available	569	Open in IMG/M
3300010398\|Ga0126383_11426903	Not Available	782	Open in IMG/M
3300010868\|Ga0124844_1013459	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophobacteraceae → Syntrophobacter → Syntrophobacter fumaroxidans → Syntrophobacter fumaroxidans MPOB	2129	Open in IMG/M
3300011119\|Ga0105246_12482523	Not Available	510	Open in IMG/M
3300012493\|Ga0157355_1004720	All Organisms → cellular organisms → Bacteria	877	Open in IMG/M
3300012948\|Ga0126375_11639095	Not Available	555	Open in IMG/M
3300012948\|Ga0126375_12071007	Not Available	505	Open in IMG/M
3300012961\|Ga0164302_10075413	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1777	Open in IMG/M
3300012971\|Ga0126369_12746651	Not Available	576	Open in IMG/M
3300012986\|Ga0164304_10001119	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	8681	Open in IMG/M
3300012987\|Ga0164307_10070600	All Organisms → cellular organisms → Bacteria → Proteobacteria	2085	Open in IMG/M
3300012987\|Ga0164307_10185077	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1405	Open in IMG/M
3300012988\|Ga0164306_11430953	Not Available	589	Open in IMG/M
3300013105\|Ga0157369_10138574	All Organisms → cellular organisms → Bacteria	2575	Open in IMG/M
3300013307\|Ga0157372_12622132	Not Available	578	Open in IMG/M
3300015077\|Ga0173483_10272756	Not Available	816	Open in IMG/M
3300021560\|Ga0126371_10569770	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1281	Open in IMG/M
3300022756\|Ga0222622_10199723	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1326	Open in IMG/M
3300023168\|Ga0247748_1007346	All Organisms → cellular organisms → Bacteria	1414	Open in IMG/M
3300025922\|Ga0207646_10985147	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylorubrum → Methylorubrum extorquens	745	Open in IMG/M
3300025972\|Ga0207668_11957098	Not Available	528	Open in IMG/M
3300026761\|Ga0207495_102220	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylorubrum → Methylorubrum extorquens	675	Open in IMG/M
3300026853\|Ga0207443_1009705	Not Available	551	Open in IMG/M
3300027252\|Ga0209973_1069669	Not Available	549	Open in IMG/M
3300027873\|Ga0209814_10000727	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	11153	Open in IMG/M
3300027873\|Ga0209814_10006532	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4493	Open in IMG/M
3300027873\|Ga0209814_10275480	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	731	Open in IMG/M
3300027873\|Ga0209814_10459519	Not Available	562	Open in IMG/M
3300027880\|Ga0209481_10210974	Not Available	972	Open in IMG/M
3300027880\|Ga0209481_10744187	Not Available	510	Open in IMG/M
3300027907\|Ga0207428_10214810	Not Available	1444	Open in IMG/M
3300027907\|Ga0207428_10218435	Not Available	1430	Open in IMG/M
3300028807\|Ga0307305_10082202	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1488	Open in IMG/M
3300028828\|Ga0307312_10042504	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2690	Open in IMG/M
3300030916\|Ga0075386_11634811	Not Available	566	Open in IMG/M
3300031093\|Ga0308197_10406324	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	534	Open in IMG/M
3300031446\|Ga0170820_16743143	Not Available	637	Open in IMG/M
3300031562\|Ga0310886_10441347	Not Available	775	Open in IMG/M
3300031719\|Ga0306917_10519603	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	935	Open in IMG/M
3300031720\|Ga0307469_11934034	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	572	Open in IMG/M
3300031720\|Ga0307469_12527195	Not Available	502	Open in IMG/M
3300031833\|Ga0310917_10424399	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	904	Open in IMG/M
3300031847\|Ga0310907_10533783	All Organisms → cellular organisms → Bacteria → Proteobacteria	631	Open in IMG/M
3300031854\|Ga0310904_10129960	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1434	Open in IMG/M
3300031879\|Ga0306919_10037085	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3130	Open in IMG/M
3300031940\|Ga0310901_10591717	Not Available	507	Open in IMG/M
3300032174\|Ga0307470_10284992	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1112	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	62.60%
Host-Associated	Host-Associated	37.40%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	61.83%
Plants	Host-Associated → Plants	37.40%
Aquatic	Environmental → Aquatic	0.76%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	61.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere	31.30%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.11%
Sediment	Environmental → Aquatic → Sediment	0.76%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	41.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	29.77%
Loam	Environmental → Terrestrial → Soil → Loam	19.85%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.34%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.53%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.76%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.76%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	29.77%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.72%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	16.03%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.11%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.34%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.58%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.05%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.05%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.53%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.53%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.76%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.76%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.76%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	25.95%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	16.03%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	15.27%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.87%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	3.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.05%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.05%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.05%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	2.29%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.29%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.53%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.53%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.53%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.53%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.53%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.76%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.76%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.76%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.76%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.76%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.76%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.76%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.76%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.76%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.76%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.76%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.76%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.76%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300003911	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009092	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012493	Unplanted soil (control) microbial communities from North Carolina - M.Soil.10.yng.090610	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300023168	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S064-202C-5	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026761	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A5-11 (SPAdes)	Environmental	Open in IMG/M
3300026853	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A5w-12 (SPAdes)	Environmental	Open in IMG/M
3300027252	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300030916	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031093	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031940	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D2	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICCgaii200_07010102	2228664021	Soil	MRMPVLAYFLVVGTVLFGGLVLLSTQLESKPLPVSQRIGVPPPFKGPADEPQIPRQD
ICChiseqgaiiDRAFT_07100743	3300000033	Soil	MRMPVLAYFLVVGTVLFGGLVLLSTQLESKPLPVSQRIGVPPPFKGPADEPQIPRQD*
F14TB_1010463751	3300001431	Soil	MRMPVLAYFLVVGTVLFGGLVLLSTQLESKPLPVSQRIGVPP
JGI25405J52794_100864702	3300003911	Tabebuia Heterophylla Rhizosphere	MRMPILAYFLVVGVILFGGMQLVSGQLEAKPLPVSQRIGVPAPFKALPGDAVIR*
Ga0062595_1003673652	3300004479	Soil	MRMPVLTYFLVVGVALFGGMRLVSSQLEAKPLPVSQRVGVPAPFKAPPVDAATH*
Ga0062594_1018553962	3300005093	Soil	MPVLTYFLVVGVALFGGMRLVSSQLEAKPLPVSQRVGVPAPFKAPPVDAATH*
Ga0065712_101088633	3300005290	Miscanthus Rhizosphere	MRMPLLAYFLVMGIILFTGLVLVSGQLESKSLPVSQRIGVPP
Ga0065705_103279323	3300005294	Switchgrass Rhizosphere	MPILAYFLVVGVILFGGMQLVSSQLEAKPLPVSQRIGVPASFKAPPSDAATR*
Ga0065705_106808392	3300005294	Switchgrass Rhizosphere	MRMPILAYFLVVGVILFGGMQLVSGQLEAKPLPVSQRIGVPASFKAPPGDTVIR*
Ga0065707_106165991	3300005295	Switchgrass Rhizosphere	MPILAYFLVVGVILFGGMQLVSSQLEAKPLPVSQRIGVPASF
Ga0066388_1001864612	3300005332	Tropical Forest Soil	MRMPVLAYFLVVGVILFGGMHLVNNQLEAKPLPVSQRIGVPAPFKAPPEAPR*
Ga0066388_1037599931	3300005332	Tropical Forest Soil	MRMPVLAYFLVVGVILFGGMHLVNNQLEAKPLSVSQRIGVPAPFKTPPEATPYDFTQQLRRNE*
Ga0066388_1045655202	3300005332	Tropical Forest Soil	MRMPILTYFLVVGIVLFGGMRLVSSQLEAKPLPVSQKIGVPAPFKAPSEATH*
Ga0066388_1048128831	3300005332	Tropical Forest Soil	MRMPVLTYFLVVGVVLFGGMRLVSSQLEAKPLPVSQRVGVPAPFKAPSVDAATH*
Ga0070691_104958551	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MRMPLLSYFLVAGTVLFGALILVGDKLEPKPLPVSQTVGVPAPFKAPPE
Ga0070691_108196111	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MRMPVLSYFLVAGAALFGVLVLVGNMFEPKPLPVSQTVGVPAPFKAPPE
Ga0070675_1005777692	3300005354	Miscanthus Rhizosphere	MRMPVLTYFLVVGVALFGGMRLVSSQLEAKPLPVSQRVGVP
Ga0070700_1000360704	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MRMPLLAYFLVMGIILFTGLVLVSGQLESKSLPVSQRIGVPPPFK
Ga0068856_1015937272	3300005614	Corn Rhizosphere	MRMPLLSYFLVAGTVLFGALILVGDKLEPKPLPVSQTVGVPAPFKAPP
Ga0066905_1000520561	3300005713	Tropical Forest Soil	PMRMPILAYFLVVGVILFGGMHLVNNQLEAKPLPVSQRIGVPAPFKAPPEATR*
Ga0066905_1000842993	3300005713	Tropical Forest Soil	MPILAYFLVVGVILFGGMQLVSSQPEAKPLPVSQRIGVPASFKAPLSDAATR*
Ga0066905_1001674924	3300005713	Tropical Forest Soil	MRMPILAYFLVVGVILFGGMQLVSGQLEAKPLPVSQRIGVPAPFKAPPGDAVVR*
Ga0066905_1001879062	3300005713	Tropical Forest Soil	MRMPIVTYFLVGGAMLFVGLVLVSSQLESNPVAVSQMVGVPAPFKAPPDEPGN*
Ga0066905_1005975232	3300005713	Tropical Forest Soil	MRMPILAYFLVVGVILFGGMQLLSSKLEAKPLPVSQRIGVPAPFKAPPGDAVIR*
Ga0066905_1015328992	3300005713	Tropical Forest Soil	MRMPILTYFLVVGTILFGGLVLVSSQLESKPLPVSQRIGLPAP
Ga0066905_1020747252	3300005713	Tropical Forest Soil	MPILAYFLVVGVVLFGGMRLVSSQLEAKPLPVSQSVGVPAPFKAPPV
Ga0066903_1004041457	3300005764	Tropical Forest Soil	PMRMPILTYFLVVGVILFGGIHLVNNQLEAKPLAVSQRIGVPAPFKAPPEATP*
Ga0066903_1005449982	3300005764	Tropical Forest Soil	MRMLVLAYFLVVGVILFGGMHLVNSQLEAKPLPVSQRIGVPAPFKAPPEAPGN*
Ga0066903_1007233834	3300005764	Tropical Forest Soil	MRMPILAYFLVVGLVLFGGMRLVSSQLEAKPLPVSQSLGVPAPFKPTG*
Ga0066903_1009486733	3300005764	Tropical Forest Soil	AMRMPILSYFLVAGAILFGGLVLVSSQLELKPLPVSQTIGVPQPFKAPPEAQNF*
Ga0066903_1023262131	3300005764	Tropical Forest Soil	MRMPILTYFLVVGVILFGGMHLVNNQLEAKPLPVSQRIGVPAPFKAPPE
Ga0066903_1036503482	3300005764	Tropical Forest Soil	MRMPVLAYFLVVGVILFGGMHLVNNQLEAKPLPVSQRIGVPAPF
Ga0066903_1051493032	3300005764	Tropical Forest Soil	MRMPILAYFLDVGAILFGGMHLVNNQLEAKPLPVSQRISVPAPFKAPPEATR*
Ga0066903_1082328561	3300005764	Tropical Forest Soil	MPVFTYFLVVGVVLFGGMRLVSNQLEAKPLPVSQRVGVPAPFKAPSVDTATH*
Ga0066903_1089177671	3300005764	Tropical Forest Soil	LVVGVVLFGGMRLVSSQLEAKPLPVSQRVGVPAPFKAPSVDAATH*
Ga0081455_100037717	3300005937	Tabebuia Heterophylla Rhizosphere	MRMPILTYFLVVGVILFGGMRLVSSQLEAKPLPVSQRIGVPAPFKAPPDATR*
Ga0081455_102169583	3300005937	Tabebuia Heterophylla Rhizosphere	MRMPILAYFLVVGVVLFGGMRLVSSQLEAKPLPVSQSVGVPAPFKAPPVDAATR*
Ga0081455_103325432	3300005937	Tabebuia Heterophylla Rhizosphere	MRMPILAYFLVVGVILFGGMHLVSSRLEAKPLPVSQRIGVPAPFKAPPVDTATR*
Ga0081455_107856753	3300005937	Tabebuia Heterophylla Rhizosphere	MRMPILAYFLVVGVILFGGMHLVSSQLEAKPLPVSQRIGVPAPFKALPEATR*
Ga0075417_100405422	3300006049	Populus Rhizosphere	MRVPILTYFLVVGVILFGGMQLVSSQLEAKPLPVSQRIGVPAPFKTPTNDAAVIR*
Ga0075417_100582294	3300006049	Populus Rhizosphere	MRMPVLAYFLVVGVILFGGMHLVSSQLEAKPLPVSQRIGVPAPFTAPLGDAVIR*
Ga0075422_103097033	3300006196	Populus Rhizosphere	MPVLAYFLVVGVILFGGMHLVSSQLEAKPLPVSQRIGVPAPFTAPLGDAVIR*
Ga0075422_103378383	3300006196	Populus Rhizosphere	MRMPLLAYFLVMGIILFTGLVFVSGQLESKSLPVSQRIGVPPPFK
Ga0079222_114299841	3300006755	Agricultural Soil	MRMPIFAYFLVMGITLFGGLILLSTQLESKPLAVSQRIGVPPPFKAAPD
Ga0075428_1010051532	3300006844	Populus Rhizosphere	MRVPILTYFLVVGVILFGGMQLVSSQLEAKPLPVSQRIGFPAPFKTPPNDAAVIR*
Ga0075428_1027100381	3300006844	Populus Rhizosphere	MRMPILAYFLVVGVILFGGMHVVSSQLEAKPLPVSQRIGVPAHFKALPEATR*
Ga0075421_1005107311	3300006845	Populus Rhizosphere	MRMPVLAYFLVVGTVLFGGLVLLSTQLESKPLPVSQRIGVPPPFKG
Ga0075421_1016713933	3300006845	Populus Rhizosphere	MRVPILTYFLVVGVILFGGMQLVSSQLEAKPLPVSQRIGVPAPFKTQQMMLL*
Ga0075433_101950373	3300006852	Populus Rhizosphere	MRVPILTYFLVVGVILFGGMQLVSSQLEAKPLPVSQRIGVPAPFKTPPNDAAVIR*
Ga0075425_1006765971	3300006854	Populus Rhizosphere	MPMPVLAYFLVMGMILFGGLALASGQLESKPLAVSQRIG
Ga0075425_1013288782	3300006854	Populus Rhizosphere	MRMPILSYFLVVGLVLFGGLVLVSSQLESKPLPVSQRIGLPTPFKALPE
Ga0075434_1003731121	3300006871	Populus Rhizosphere	MRMPLLSHFLVVGAVLFGGLILVSGQLASKPLPVSQRI
Ga0075429_1000928411	3300006880	Populus Rhizosphere	MRMPILTYFGVVGTVLFGGLVLVSSQLESKPLPVSQRVGVPPPLFW*
Ga0075426_109267642	3300006903	Populus Rhizosphere	DTRMRMPVLTYFLVVGVALFGGMRLVSSQLEAKPLPVSQRVGVPAPFKAPPVDAATH*
Ga0075424_1010362703	3300006904	Populus Rhizosphere	MRMPVLVYFLGMGMILFGGLALASGQLESKPLAVSQRI
Ga0075424_1028264012	3300006904	Populus Rhizosphere	MRMPLLFYFLVAGTVLFGALILVGDKLEPKPLPVSQTVGVPAPF
Ga0075436_1007439861	3300006914	Populus Rhizosphere	MPVLTYFPVVGVALFGGMRLVSSQLEAKPLPVSQRVGVPAPFKAPPVDAATH*
Ga0075435_1001096351	3300007076	Populus Rhizosphere	MRMPVLAYFLVVGTVLFGGLVLLSTQLESKPLPVSQRIGVPPPFKGPAD
Ga0075435_1013012372	3300007076	Populus Rhizosphere	MRMPILSYFLVIGAVVFGGLVLVSSQLESKPLPVSQRVGVP
Ga0105250_106088762	3300009092	Switchgrass Rhizosphere	MPLLAYFLVMGIILFTGLVLVSGQLESKSLPVSQRIGVPPPF
Ga0111539_100777671	3300009094	Populus Rhizosphere	MPILAYFLVVGVILFGGMQLVSGQLEAKPLPVSQRIGVPASFKAPPGDTVIR*
Ga0111539_111782322	3300009094	Populus Rhizosphere	MPILAYFLVVGVILFGGMHVVSSQLEAKPLPVSQRIGVPAHFKALPEATR*
Ga0075418_102216596	3300009100	Populus Rhizosphere	MPILSYFLVVGTVLFGGLVLVSSQLESKPLPVSQRVGVPP
Ga0075418_117676842	3300009100	Populus Rhizosphere	MRMPVLAYFLVVGTVLFGGLVLLSTQLESKPLPVSQR
Ga0114129_118490361	3300009147	Populus Rhizosphere	MPVLAYFLVVGVILFGGMHLVSSQLEAKPLPVSQRIGVPGPFTAPLADAVIR*
Ga0111538_128891191	3300009156	Populus Rhizosphere	MPIVSYFLVVGILLFGGLILVSSRLESKQLPVSQTIGLPAPFKAPPEDT
Ga0075423_121449381	3300009162	Populus Rhizosphere	MPILSYFLVIGAVVFGGLVLVSSQLESKPLPVSQRVGV
Ga0105238_127200051	3300009551	Corn Rhizosphere	MPVLVYFLGMGMILFGGLALASGQLESKPLAVSQRIGVPAPFNAPPD
Ga0126380_100006018	3300010043	Tropical Forest Soil	MPILAYFLVVGVVLFGGMRLVSSQLEAKPLPVSQSIGVPAPFKAPSDATR*
Ga0126380_104010451	3300010043	Tropical Forest Soil	LVEGLILEQIVMRMPVFAYFLVMGMILFGGLALASGQLESKPLAVSQRI
Ga0126384_119178582	3300010046	Tropical Forest Soil	MPILTYFLVVGVILFGGIHLVNNQLEAKPLAVSQRIGVPAPFKAPPEATR*
Ga0126382_104271662	3300010047	Tropical Forest Soil	MPILTYFLVVGVVLFGGMRLVSSQLEAKPLPVSQSVGVPAPFKAPPVDAATR*
Ga0126382_123519011	3300010047	Tropical Forest Soil	YFLVVGVVLFGGMRLVSSQLEAKPLPVSQSIGVPAPFKAPSDATR*
Ga0126382_124983031	3300010047	Tropical Forest Soil	MPILTYFLVVGVILFGGMRLVSSQLEAKPLPVSQKIGVPAPFKPPPDATR*
Ga0126370_105319341	3300010358	Tropical Forest Soil	MPILAYFLVVGVILFGGMHLVNNQLEAKPLPVSQRIGVPAPFKAPPEATR*
Ga0126370_120626262	3300010358	Tropical Forest Soil	MPVLTYFLVVGVVLFGGMRLVSSQLEAKPLPVSQRVGVPAPFKAPSVDAAAH*
Ga0126376_100295245	3300010359	Tropical Forest Soil	MRMPILAYFLVVGVILFGGMHLVNNQLEAKPLPVSQRIGVPAPFKAPPEAIR*
Ga0126376_119991911	3300010359	Tropical Forest Soil	MPILAYFLLVGVILFGGIHLVNNQLEAKPLAVSQRIGVPAPFKAPPEATR*
Ga0126372_103900612	3300010360	Tropical Forest Soil	MRMPILAYFLVVGVILFGGMHLVNNQLEAKPLPVSQRIGVPAPFKAPPEATR*
Ga0126372_111409472	3300010360	Tropical Forest Soil	MPVLTYFLVVGVVLFGGMRLVSSQLEAKPLPVSQRVGVPAPFKAPSVDAATH*
Ga0126378_102837824	3300010361	Tropical Forest Soil	MRMPILAYFLDVGAILFGGMHLVNNQLEAKPLPVSQRISVPAPFKTPPEAAR*
Ga0126377_114371982	3300010362	Tropical Forest Soil	MPILTYFLVVGVILFGGMRLVSSQLEAKPLPVSQKIGVPAPFNPSPDATR*
Ga0134125_111677912	3300010371	Terrestrial Soil	MRMPIFGYFVVVGAMLFGAIALVSSELESKPLPVSQTVGVPAPFK
Ga0126381_1012472042	3300010376	Tropical Forest Soil	MPVLTYFLVVGVVLFGGMRLVSSQLEAKPLPVSQRFGVPAPFKAPSFDAATH*
Ga0134124_123985111	3300010397	Terrestrial Soil	MPLLFYFLVAGTVLFGALILVGDKLEPKPLPVSQTVGVPAPF
Ga0126383_114269031	3300010398	Tropical Forest Soil	MPILSYFLVAGTILFGGLILLSSQLEIKPLPVSQTIGVPQPFKAPPEAQNF*
Ga0124844_10134591	3300010868	Tropical Forest Soil	MPILAYFLVVGVILFGGMHLVNNQLEAKPLPVSQRIGVPAPFK
Ga0105246_124825232	3300011119	Miscanthus Rhizosphere	MPLLAYFLVMGIILFTGLVLVSGQLESKSLPVSQRIGVPPPFKAQPDA
Ga0157355_10047201	3300012493	Unplanted Soil	MPLLAYFLVMGIILFTGLVFVSGQLESKSLPVSQRIGVP
Ga0126375_116390951	3300012948	Tropical Forest Soil	MAYFLVVGVVLFGGMRLVSSQLEAKPLPVSQSIGVPAPFKAPSDATR*
Ga0126375_120710071	3300012948	Tropical Forest Soil	MPILAYFLVVGVILFGGIHLVNNQLEAKPLAVSQRIGVPAPFKAPPEATP*
Ga0164302_100754132	3300012961	Soil	MPVLTYFLVVGVALFGGMRLVSSQLEAKPLTVSQRVGVPAPFKAPPVDAATH*
Ga0126369_127466511	3300012971	Tropical Forest Soil	MPILTYFLVVGVILFGGMHLVNNQLEAKPLAVSQRIGVPAPFKAPPEATP*
Ga0164304_100011199	3300012986	Soil	MPLLAYFLVMGIILFTGLVFVSGQLESKSLPVSQRIGVPPPF
Ga0164307_100706001	3300012987	Soil	MPLLFYFLVAGTVLFGALILVGDKLEPKPLPVSQTVGVPAPFKAPPEE
Ga0164307_101850773	3300012987	Soil	LVEGFSLEQIVMRMPVLAYFFVMGMILFGGLALASGQLESKPLAVSQRIGVPAPF
Ga0164306_114309531	3300012988	Soil	MRMPILSYFLAAGIILFGGLILVSSQLESKPLPVSQ
Ga0157369_101385741	3300013105	Corn Rhizosphere	MPLLAYFLVMGIILFTGLVFVSGQLESKSLPVSQRI
Ga0157372_126221321	3300013307	Corn Rhizosphere	MPLLAYFLVMGIILFTGLVLVSGQLESKSLPVSQRIGVPPPFKAQPDAN
Ga0173483_102727563	3300015077	Soil	MRMPIFGYFVVVGAMLFGAIALVSSELESKPLPVSQTVGVPAPFKA
Ga0126371_105697701	3300021560	Tropical Forest Soil	MRMPILAYFLVVGVILFGGMHLVNNQLEAKPLPVSQRIGVPAPFKAPPEATR
Ga0222622_101997233	3300022756	Groundwater Sediment	MPVLTYFLVVGVVLFGGMRLVSSQLEAKPLPVSQRVGVPAPFKAPPVDAATH
Ga0247748_10073463	3300023168	Soil	MRMPLLAYFLVMGIILFTGLVFVSGQLESKSLPVSQRIGVPPPFKAQ
Ga0207646_109851473	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MRMPLLAYFLAMGIILFTGLVLVSSQLESKSLPVS
Ga0207668_119570981	3300025972	Switchgrass Rhizosphere	MRMPLLFYFLVAGTVLFGALILVGDKLEPKPLPVSQTVGVPAPFKAPP
Ga0207495_1022201	3300026761	Soil	MRMPLLAYFLAMGIILFTGLVLVSSQLESKSLPVSQRIGVPP
Ga0207443_10097052	3300026853	Soil	MRMPLLAYFLAMGIILFTGLVLVSSQLESKSLPVSQRIGVPPPFKAQP
Ga0209973_10696692	3300027252	Arabidopsis Thaliana Rhizosphere	MRMPLLAYFLVMGIILITGLVLVSSQLESKSLPVSQRIGVP
Ga0209814_100007272	3300027873	Populus Rhizosphere	MRMPVLAYFLVVGVILFGGMHLVSSQLEAKPLPVSQRIGVPAPFTAPLGDAVIR
Ga0209814_100065329	3300027873	Populus Rhizosphere	MRMPILAYFLVVGVILFGGMQLVSGQLEAKPLPVSQRIGVPASFKAPPGDTVIR
Ga0209814_102754802	3300027873	Populus Rhizosphere	MPILAYFLVVGVILFGGMQLVSSQLEAKPLPVSQRIGVPAPFKTPTNDAAVIR
Ga0209814_104595191	3300027873	Populus Rhizosphere	MRMPLLSHFLVVGAVLFGGLILVSSQLASKPLPVSQRIGVPPPFKAPPDQT
Ga0209481_102109741	3300027880	Populus Rhizosphere	MRMPVLAYFLVVGTVLFGGLVLLSTQLESKPLPVSQRIGAPPPFKGPADEPQIPRQD
Ga0209481_107441871	3300027880	Populus Rhizosphere	MRMPVLAYFLVVGTVLFGGLVLLSTQLESKPLPVSQRIGVPPPTLFWRC
Ga0207428_102148102	3300027907	Populus Rhizosphere	MRMPVLAYFLVVGTVLFGGLVLLSTQLESKPLPVSQRIGVPPPTLFWRCR
Ga0207428_102184352	3300027907	Populus Rhizosphere	RMPVLAYFLVVGTVLFGGLVLLSTQLESKPLPVSQRIGVPPPFKGPADEPQIPRQD
Ga0307305_100822023	3300028807	Soil	MPVLTYFLVVGVVLFGGMRLVSSQLEAKPLPVSQRIGVPAPFKAPPVDAATH
Ga0307312_100425043	3300028828	Soil	MRMPVLTYFLVVGVVLFGGMRLVSSQLEAKPLPVSQRVGVPAPFKAPPVDAATH
Ga0075386_116348112	3300030916	Soil	MRMPVLSYLLVAGTVLFGVLVLVGNKLEPKPLPVSQMVGVPAPFKAPPEDVREQAL
Ga0308197_104063242	3300031093	Soil	TQMRMPVLTYFLVVCVVLFGGMRLVSSQLEAKPLPVSQRIGVPAPFKAPPVDAATH
Ga0170820_167431431	3300031446	Forest Soil	MRMPILSYFLAAGIILFGGLILVSSQLESKPLPVSQRIGVPPPFKA
Ga0310886_104413472	3300031562	Soil	LVEGRILEQIVMRMPVLVYFLGMGMILFGGLALASGQLESKPLAVSQRIGVPAPFKAPPD
Ga0306917_105196031	3300031719	Soil	APNLEPPMRMPILAYFLVVGVILFGGMHLVNNQLEAKPLPVSQRIGVPAPFKAPPEATR
Ga0307469_119340342	3300031720	Hardwood Forest Soil	MRMPLLSYFLVAGTVLFGALVLVGNKLEPKPLPVSQA
Ga0307469_125271951	3300031720	Hardwood Forest Soil	MPILAYFLVVGVILFGGMQLVSSQLEAKPLPVSQRIGVPASFKAPPSDAATR
Ga0310917_104243991	3300031833	Soil	FLVVGVILFGGMHLVNNQLEAKPLPVSQRIGVPAPFKAPPEATR
Ga0310907_105337831	3300031847	Soil	MRMPLLAYFLAMGIILFTGLVLVSGQLESKSLPVSQ
Ga0310904_101299603	3300031854	Soil	MRMPVLVYFLGMGMILFGGLALASGQLESKPLAVSQRIGVPA
Ga0306919_100370853	3300031879	Soil	MPILAYFLVVGVILFGGMHLVNNQLEAKPLPVSQRIGVPAPFKAPPEATR
Ga0310901_105917171	3300031940	Soil	MPVLVYFLGMGMILFGGLALASGQLESKPLAVSQRIGVPTPFKVPPDAN
Ga0307470_102849921	3300032174	Hardwood Forest Soil	MRMPLLSYFLVAGTVLFGALVLVGNKLEPKPLPVSQTVG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F061957

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences