Metagenome Family F061956

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F061956
Family Type	Metagenome
Number of Sequences	131
Average Sequence Length	60 residues
Representative Sequence	MPGHLDVIEIPSADPITVALGGDNDIVIAQLHDDGRRASVYFDVQHANAIAAAILTLAKHFSGR
Number of Associated Samples	106
Number of Associated Scaffolds	131

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	79.39 %
% of genes near scaffold ends (potentially truncated)	47.33 %
% of genes from short scaffolds (< 2000 bps)	80.15 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (57.252 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere (16.030 % of family members)
Environment Ontology (ENVO)	Unclassified (58.779 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (83.969 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 28.12% β-sheet: 32.81% Coil/Unstructured: 39.06%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 131 Family Scaffolds
PF12244	DUF3606	18.32
PF13442	Cytochrome_CBB3	4.58
PF13505	OMP_b-brl	3.82
PF00034	Cytochrom_C	3.05
PF01068	DNA_ligase_A_M	2.29
PF04392	ABC_sub_bind	1.53
PF00115	COX1	1.53
PF13551	HTH_29	0.76
PF13545	HTH_Crp_2	0.76
PF00116	COX2	0.76
PF13535	ATP-grasp_4	0.76
PF13333	rve_2	0.76
PF09954	DUF2188	0.76
PF00536	SAM_1	0.76
PF13711	DUF4160	0.76

COG ID	Name	Functional Category	% Frequency in 131 Family Scaffolds
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	2.29
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	2.29
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	1.53
COG1622	Heme/copper-type cytochrome/quinol oxidase, subunit 2	Energy production and conversion [C]	0.76
COG4263	Nitrous oxide reductase	Inorganic ion transport and metabolism [P]	0.76

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.25 %
All Organisms	root	All Organisms	42.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.25 %
cellular organisms	root	All Organisms → cellular organisms	42.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.25 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	42.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.25 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	25.95 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2.29 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	1.53 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.25 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	19.08 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.53 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.53 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	1.53 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.25 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	10.69 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	7.63 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.53 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1.53 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.53 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.25 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	7.63 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	2.29 %
Cytophagia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia	1.53 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1.53 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.53 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.53 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.76 %
Burkholderiales genera incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.25 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	7.63 %
Cytophagales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales	1.53 %
Cupriavidus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus	1.53 %
Variovorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	1.53 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.53 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.53 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	0.76 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.76 %
Rubrivivax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rubrivivax	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.25 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	7.63 %
unclassified Cupriavidus	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → unclassified Cupriavidus	1.53 %
unclassified Variovorax	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax	1.53 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.53 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.53 %
unclassified Rubrivivax	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rubrivivax → unclassified Rubrivivax	0.76 %
Paraburkholderia edwinii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia edwinii	0.76 %
Spirosomaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Spirosomaceae	0.76 %
Cytophagaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cytophagaceae	0.76 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.25 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	7.63 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.53 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.53 %
Rubrivivax sp. A210	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rubrivivax → unclassified Rubrivivax → Rubrivivax sp. A210	0.76 %
Variovorax sp. YR216	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp. YR216	0.76 %
Cupriavidus sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → unclassified Cupriavidus → Cupriavidus sp.	0.76 %
Variovorax sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp.	0.76 %
Cupriavidus sp. BIS7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → unclassified Cupriavidus → Cupriavidus sp. BIS7	0.76 %
Dyadobacter	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Spirosomaceae → Dyadobacter	0.76 %
unclassified Cytophagaceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cytophagaceae → unclassified Cytophagaceae	0.76 %
Paraburkholderia edwinii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia edwinii	0.76 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.25 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	7.63 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.53 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.53 %
unclassified Dyadobacter	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Spirosomaceae → Dyadobacter → unclassified Dyadobacter	0.76 %
Cytophagaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cytophagaceae → unclassified Cytophagaceae → Cytophagaceae bacterium	0.76 %
Rubrivivax sp. A210	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rubrivivax → unclassified Rubrivivax → Rubrivivax sp. A210	0.76 %
Variovorax sp. YR216	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp. YR216	0.76 %
Cupriavidus sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → unclassified Cupriavidus → Cupriavidus sp.	0.76 %
Variovorax sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp.	0.76 %
Cupriavidus sp. BIS7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → unclassified Cupriavidus → Cupriavidus sp. BIS7	0.76 %
Paraburkholderia edwinii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia edwinii	0.76 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.25 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	7.63 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.53 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.53 %
Dyadobacter sp. CY356	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Spirosomaceae → Dyadobacter → unclassified Dyadobacter → Dyadobacter sp. CY356	0.76 %
Cytophagaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cytophagaceae → unclassified Cytophagaceae → Cytophagaceae bacterium	0.76 %
Rubrivivax sp. A210	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rubrivivax → unclassified Rubrivivax → Rubrivivax sp. A210	0.76 %
Variovorax sp. YR216	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp. YR216	0.76 %
Cupriavidus sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → unclassified Cupriavidus → Cupriavidus sp.	0.76 %
Variovorax sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp.	0.76 %
Cupriavidus sp. BIS7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → unclassified Cupriavidus → Cupriavidus sp. BIS7	0.76 %
Paraburkholderia edwinii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia edwinii	0.76 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.76 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002459\|JGI24751J29686_10135444	Not Available	521	Open in IMG/M
3300004114\|Ga0062593_101536053	Not Available	719	Open in IMG/M
3300004114\|Ga0062593_102362367	All Organisms → cellular organisms → Bacteria	599	Open in IMG/M
3300004479\|Ga0062595_102084414	Not Available	551	Open in IMG/M
3300004480\|Ga0062592_102504792	Not Available	519	Open in IMG/M
3300004643\|Ga0062591_102245178	Not Available	568	Open in IMG/M
3300005293\|Ga0065715_10130518	All Organisms → cellular organisms → Bacteria	2018	Open in IMG/M
3300005328\|Ga0070676_10847258	All Organisms → cellular organisms → Bacteria → Proteobacteria	677	Open in IMG/M
3300005329\|Ga0070683_100284923	All Organisms → cellular organisms → Bacteria	1572	Open in IMG/M
3300005329\|Ga0070683_100309316	Not Available	1503	Open in IMG/M
3300005330\|Ga0070690_100035623	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	3124	Open in IMG/M
3300005330\|Ga0070690_100565893	Not Available	859	Open in IMG/M
3300005331\|Ga0070670_100092443	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2601	Open in IMG/M
3300005331\|Ga0070670_100214402	Not Available	1674	Open in IMG/M
3300005331\|Ga0070670_100883744	Not Available	810	Open in IMG/M
3300005331\|Ga0070670_100992348	Not Available	763	Open in IMG/M
3300005333\|Ga0070677_10005090	All Organisms → cellular organisms → Bacteria	4318	Open in IMG/M
3300005334\|Ga0068869_100855196	Not Available	785	Open in IMG/M
3300005335\|Ga0070666_10008747	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → unclassified Cupriavidus → Cupriavidus sp. BIS7	6294	Open in IMG/M
3300005335\|Ga0070666_10045706	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cytophagaceae → unclassified Cytophagaceae → Cytophagaceae bacterium	2935	Open in IMG/M
3300005338\|Ga0068868_100474638	Not Available	1092	Open in IMG/M
3300005339\|Ga0070660_100830004	Not Available	778	Open in IMG/M
3300005339\|Ga0070660_101697433	Not Available	538	Open in IMG/M
3300005340\|Ga0070689_100714623	Not Available	876	Open in IMG/M
3300005340\|Ga0070689_101296197	Not Available	656	Open in IMG/M
3300005341\|Ga0070691_10171238	All Organisms → cellular organisms → Bacteria → Proteobacteria	1125	Open in IMG/M
3300005353\|Ga0070669_100088695	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2315	Open in IMG/M
3300005355\|Ga0070671_101239527	All Organisms → cellular organisms → Bacteria	657	Open in IMG/M
3300005367\|Ga0070667_101329645	Not Available	673	Open in IMG/M
3300005438\|Ga0070701_11197423	Not Available	539	Open in IMG/M
3300005456\|Ga0070678_100052874	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2951	Open in IMG/M
3300005457\|Ga0070662_100084800	All Organisms → cellular organisms → Bacteria	2367	Open in IMG/M
3300005526\|Ga0073909_10133194	Not Available	1019	Open in IMG/M
3300005543\|Ga0070672_101840359	Not Available	544	Open in IMG/M
3300005544\|Ga0070686_101726752	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	532	Open in IMG/M
3300005546\|Ga0070696_101247330	Not Available	629	Open in IMG/M
3300005548\|Ga0070665_100017519	All Organisms → cellular organisms → Bacteria	7193	Open in IMG/M
3300005548\|Ga0070665_100098988	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2920	Open in IMG/M
3300005577\|Ga0068857_102329967	Not Available	526	Open in IMG/M
3300005615\|Ga0070702_100167123	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Spirosomaceae → Dyadobacter → unclassified Dyadobacter → Dyadobacter sp. CY356	1427	Open in IMG/M
3300005616\|Ga0068852_100086023	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → unclassified Cupriavidus → Cupriavidus sp.	2801	Open in IMG/M
3300005718\|Ga0068866_10008135	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	4408	Open in IMG/M
3300005843\|Ga0068860_100124248	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2473	Open in IMG/M
3300006196\|Ga0075422_10390059	Not Available	614	Open in IMG/M
3300006237\|Ga0097621_100952217	Not Available	801	Open in IMG/M
3300006358\|Ga0068871_101858683	Not Available	572	Open in IMG/M
3300006852\|Ga0075433_10844666	All Organisms → cellular organisms → Bacteria → Proteobacteria	799	Open in IMG/M
3300006854\|Ga0075425_101254802	Not Available	841	Open in IMG/M
3300007076\|Ga0075435_101643178	Not Available	564	Open in IMG/M
3300009101\|Ga0105247_11230326	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	598	Open in IMG/M
3300009156\|Ga0111538_10177569	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2703	Open in IMG/M
3300009156\|Ga0111538_11804365	All Organisms → cellular organisms → Bacteria → Proteobacteria	770	Open in IMG/M
3300009162\|Ga0075423_12036751	Not Available	622	Open in IMG/M
3300009177\|Ga0105248_13148693	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	525	Open in IMG/M
3300010399\|Ga0134127_10882809	Not Available	948	Open in IMG/M
3300010400\|Ga0134122_10567671	Not Available	1041	Open in IMG/M
3300011119\|Ga0105246_10983617	Not Available	763	Open in IMG/M
3300012485\|Ga0157325_1011602	Not Available	666	Open in IMG/M
3300012505\|Ga0157339_1067802	Not Available	509	Open in IMG/M
3300012897\|Ga0157285_10192720	Not Available	635	Open in IMG/M
3300012901\|Ga0157288_10322430	Not Available	549	Open in IMG/M
3300012908\|Ga0157286_10476360	Not Available	501	Open in IMG/M
3300012911\|Ga0157301_10034262	Not Available	1220	Open in IMG/M
3300012916\|Ga0157310_10429932	Not Available	557	Open in IMG/M
3300012961\|Ga0164302_11778176	Not Available	519	Open in IMG/M
3300012984\|Ga0164309_11786773	Not Available	527	Open in IMG/M
3300013296\|Ga0157374_10615077	Not Available	1097	Open in IMG/M
3300013296\|Ga0157374_11134775	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rubrivivax → unclassified Rubrivivax → Rubrivivax sp. A210	802	Open in IMG/M
3300013297\|Ga0157378_10771855	All Organisms → cellular organisms → Bacteria → Proteobacteria	985	Open in IMG/M
3300013297\|Ga0157378_11393276	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	744	Open in IMG/M
3300013306\|Ga0163162_11739993	Not Available	712	Open in IMG/M
3300013308\|Ga0157375_10109345	All Organisms → cellular organisms → Bacteria	2860	Open in IMG/M
3300014325\|Ga0163163_10061572	All Organisms → cellular organisms → Bacteria	3718	Open in IMG/M
3300014968\|Ga0157379_11864564	Not Available	592	Open in IMG/M
3300014969\|Ga0157376_10061488	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	3157	Open in IMG/M
3300015371\|Ga0132258_11533954	All Organisms → cellular organisms → Bacteria	1682	Open in IMG/M
3300015371\|Ga0132258_13198636	Not Available	1130	Open in IMG/M
3300015372\|Ga0132256_100072540	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	3268	Open in IMG/M
3300015373\|Ga0132257_100579102	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1385	Open in IMG/M
3300015374\|Ga0132255_101500890	Not Available	1020	Open in IMG/M
3300017792\|Ga0163161_10329068	All Organisms → cellular organisms → Bacteria	1209	Open in IMG/M
3300017792\|Ga0163161_11323511	Not Available	627	Open in IMG/M
3300018476\|Ga0190274_13048388	Not Available	563	Open in IMG/M
3300019356\|Ga0173481_10883452	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	502	Open in IMG/M
3300019362\|Ga0173479_10144225	Not Available	943	Open in IMG/M
3300022756\|Ga0222622_11460274	Not Available	504	Open in IMG/M
3300025290\|Ga0207673_1003100	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp.	1932	Open in IMG/M
3300025321\|Ga0207656_10192936	All Organisms → cellular organisms → Bacteria → Proteobacteria	981	Open in IMG/M
3300025893\|Ga0207682_10010845	All Organisms → cellular organisms → Bacteria	3567	Open in IMG/M
3300025899\|Ga0207642_10073118	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1639	Open in IMG/M
3300025901\|Ga0207688_10070011	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1989	Open in IMG/M
3300025903\|Ga0207680_10135192	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1629	Open in IMG/M
3300025903\|Ga0207680_10826427	Not Available	664	Open in IMG/M
3300025908\|Ga0207643_10054921	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp. YR216	2264	Open in IMG/M
3300025918\|Ga0207662_11243172	Not Available	529	Open in IMG/M
3300025920\|Ga0207649_10142665	Not Available	1641	Open in IMG/M
3300025923\|Ga0207681_10354946	Not Available	1174	Open in IMG/M
3300025923\|Ga0207681_10972260	Not Available	712	Open in IMG/M
3300025923\|Ga0207681_11632176	Not Available	539	Open in IMG/M
3300025924\|Ga0207694_11682991	Not Available	534	Open in IMG/M
3300025925\|Ga0207650_10046809	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3186	Open in IMG/M
3300025925\|Ga0207650_10748008	Not Available	827	Open in IMG/M
3300025926\|Ga0207659_10394603	Not Available	1156	Open in IMG/M
3300025926\|Ga0207659_10700051	Not Available	867	Open in IMG/M
3300025931\|Ga0207644_10481113	Not Available	1022	Open in IMG/M
3300025931\|Ga0207644_11319781	Not Available	606	Open in IMG/M
3300025932\|Ga0207690_10461683	Not Available	1022	Open in IMG/M
3300025933\|Ga0207706_10010120	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	8635	Open in IMG/M
3300025934\|Ga0207686_11203452	All Organisms → cellular organisms → Bacteria → Proteobacteria	620	Open in IMG/M
3300025934\|Ga0207686_11335269	Not Available	589	Open in IMG/M
3300025936\|Ga0207670_11567227	Not Available	560	Open in IMG/M
3300025938\|Ga0207704_10402280	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1081	Open in IMG/M
3300025940\|Ga0207691_10619210	Not Available	916	Open in IMG/M
3300025942\|Ga0207689_10568927	Not Available	952	Open in IMG/M
3300026023\|Ga0207677_10083697	All Organisms → cellular organisms → Bacteria	2297	Open in IMG/M
3300026035\|Ga0207703_11929591	Not Available	567	Open in IMG/M
3300026041\|Ga0207639_10460588	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1156	Open in IMG/M
3300026041\|Ga0207639_10637486	Not Available	985	Open in IMG/M
3300026075\|Ga0207708_11251830	Not Available	649	Open in IMG/M
3300026088\|Ga0207641_10119149	All Organisms → cellular organisms → Bacteria	2352	Open in IMG/M
3300026089\|Ga0207648_11530733	Not Available	627	Open in IMG/M
3300026095\|Ga0207676_10544290	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia edwinii	1108	Open in IMG/M
3300026095\|Ga0207676_12415595	Not Available	523	Open in IMG/M
3300026116\|Ga0207674_10348708	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1431	Open in IMG/M
3300026121\|Ga0207683_10079571	All Organisms → cellular organisms → Bacteria	2906	Open in IMG/M
3300026121\|Ga0207683_11153160	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	719	Open in IMG/M
3300026142\|Ga0207698_10176660	All Organisms → cellular organisms → Bacteria	1886	Open in IMG/M
3300028379\|Ga0268266_10643722	Not Available	1020	Open in IMG/M
3300028889\|Ga0247827_10624200	Not Available	693	Open in IMG/M
3300031858\|Ga0310892_10923294	Not Available	612	Open in IMG/M
3300031944\|Ga0310884_10201330	Not Available	1063	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	72.52%
Environmental	Environmental	27.48%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	72.52%
Terrestrial	Environmental → Terrestrial	26.72%
Aquatic	Environmental → Aquatic	0.76%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	41.98%
Rhizoplane	Host-Associated → Plants → Rhizoplane	28.24%
Soil	Environmental → Terrestrial → Soil	26.72%
Roots	Host-Associated → Plants → Roots	2.29%
Sediment	Environmental → Aquatic → Sediment	0.76%

Habitat	Taxonomy	Distribution
Soil	Host-Associated → Plants → Rhizosphere → Soil	26.72%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	22.14%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	16.03%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	15.27%
Loam	Environmental → Terrestrial → Soil → Loam	10.69%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.82%
Soil	Host-Associated → Plants → Rhizoplane → Soil	2.29%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	2.29%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.76%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	26.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	22.14%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	15.27%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.69%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	9.92%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.82%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.29%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	2.29%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	2.29%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.76%

Habitat	Taxonomy	Distribution
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	16.03%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.63%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	6.87%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	5.34%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	5.34%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.34%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	5.34%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	4.58%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	4.58%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.82%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.82%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.05%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.29%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	2.29%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.29%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	2.29%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.29%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.53%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.53%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	1.53%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	1.53%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.53%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.76%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.76%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.76%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.76%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.76%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.76%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.76%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002459	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6	Host-Associated	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012485	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.7.old.040610	Host-Associated	Open in IMG/M
3300012505	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.10.yng.090610	Host-Associated	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012901	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S119-311C-1	Environmental	Open in IMG/M
3300012908	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1	Environmental	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300012916	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S213-509R-2	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025290	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5	Host-Associated	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025893	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI24751J29686_101354441	3300002459	Corn, Switchgrass And Miscanthus Rhizosphere	RRDNSFPSTTEEAPMPGHLDVIEIPSADPITVALGGDNDIVIAQLRDDGRRASVYFDVQHANAIAAAILMLAKDFSGR*
Ga0062593_1015360532	3300004114	Soil	MPGHLDVIEIPSADPITVALGGDNDIVIAQLRDDGRRASVYFDVQHANAIAAAILMLAKDFSGR*
Ga0062593_1023623671	3300004114	Soil	MPGHLDVIEIPSTDPITVALGGDNDIVIAQLHDHGRRATVYFDVQHANAIAAAILTLAKHFSGR*
Ga0062595_1020844142	3300004479	Soil	MPGHLDVIEIPSADPITVALGGDNDIVIAQLHDDGRRASVYFDVEHANAIAAAILTLAKNFSGR*
Ga0062592_1025047921	3300004480	Soil	MPGHLDVIEIPSADPITMALGGDNDIVIAQLHDDGRRASVYFDVQHANAIAAAILTLAKHFSGR*
Ga0062591_1022451781	3300004643	Soil	MPGHLDVIEIPSADPITVALGGDNDIVIAQLHDDGRRASVYFDVEHANAIAAAILTLAKHFSGR*
Ga0065715_101305181	3300005293	Miscanthus Rhizosphere	MPGHLDVIEIPSADPITVAPGGDNDIVIAQLRDDGRRASVYFDVQHANAIAAA
Ga0070676_108472582	3300005328	Miscanthus Rhizosphere	MSGHLDVIEVPSTEPITVALGGDNDIVIAQLDNDGRRASVYFDVRHANAIAAAILTLAKDFSGR*
Ga0070683_1002849233	3300005329	Corn Rhizosphere	MPGHLDVIEIPSADPITVALGGDNDIVIAQLRDDGRRASVYFDVQHANAIAAAIL
Ga0070683_1003093162	3300005329	Corn Rhizosphere	MPGHLDVIEIPCTNPITVALGGNNDIVIAQLHDDGRRASVYFDVQHANAIAAAILTLAKDFSGR*
Ga0070690_1000356234	3300005330	Switchgrass Rhizosphere	MPGHLDVIEIPSADPITVALGGNNDIVVAQLHDDGRRASVYFDVQHANAIAAAILTLARDFSGR*
Ga0070690_1005658932	3300005330	Switchgrass Rhizosphere	SKHDGGTMPGHLDVIEIPSADPITVALGGDNDIVIAQLHDDGRRASVYFDVKHANAIAAAILTLAKHFSGR*
Ga0070670_1000924437	3300005331	Switchgrass Rhizosphere	MPGHLDVIEIPSADLITVALGGNNDIVIAQLHDDGRRASVYFDVQH
Ga0070670_1002144024	3300005331	Switchgrass Rhizosphere	MPGHLDVIEIPSADPITVALGGDNDIVIAQLHDDGRRASVYFDVKHANAIAAAILTLAKHFSGR*
Ga0070670_1008837441	3300005331	Switchgrass Rhizosphere	MSGHLDVIEVPSTEPITVALGGDKDIVIAQLHNDGRRASVYFDVRHANAIAAAILTLAKDFSGR*
Ga0070670_1009923481	3300005331	Switchgrass Rhizosphere	MPGHLDVIEIPCTNPITVALGGNNDIVIAQLHDDGRRASVYFDVQHANAIAAAIL
Ga0070677_100050905	3300005333	Miscanthus Rhizosphere	MPGHLDVIEIPSADPITVAPGGDNDIVIAQLRDDGRRASVYFDVQHANAIAAAILMLAKDFSGR*
Ga0068869_1008551962	3300005334	Miscanthus Rhizosphere	MPGHLDVIEIPSADPITMALGGDNDIVIAQLHDDGRRASVYFDVEHANAIAAAILTLAKHFSGR*
Ga0070666_100087477	3300005335	Switchgrass Rhizosphere	MPGHLDVIEIPSADPITIALGGDNDIVIAQLHDDGRRASVYFDVQHANAIAAAIL
Ga0070666_100457061	3300005335	Switchgrass Rhizosphere	RSSKHDGGTMPGHLDVIEIPCTNPITVALGGNNDIVIAQLHDDGRRASVYFDVQHANAIAAAILTLAKDFSGR*
Ga0068868_1004746382	3300005338	Miscanthus Rhizosphere	MPGHLDVIEIPCTNPITVALGGNNDIVIAQLHDDGRRASVYFDVQDANAIAAAILALAKHFQERGS*
Ga0070660_1008300042	3300005339	Corn Rhizosphere	MPGHLDVIEIPSADPITVALGGDNDIVIAQLRDDGRRASVYFDVQHANAIAAAILTLAKDFSGR*
Ga0070660_1016974331	3300005339	Corn Rhizosphere	MPGHLDVIEIPCTNPITVALGGNNDIVIAQLHDDGRRASVYFDVQHANAIAAAILTLAKHFSGR*
Ga0070689_1007146232	3300005340	Switchgrass Rhizosphere	MPGHLDVIEIPSTDPITVALGGNNDIVIAQLHDDGRRASVYFDVEHANAIAAAILTLAKHFSGR*
Ga0070689_1012961971	3300005340	Switchgrass Rhizosphere	MSGHLDVIEVPSTEPITVALGGDKDIVIAQLHNDGRRASVYFDV*
Ga0070691_101712382	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MPGPLDVIEIPSTDPITVALGGNNDIVIAQLHDDGRRASVYFDVQHANAIAAAILTLAKHFSGR*
Ga0070669_1000886952	3300005353	Switchgrass Rhizosphere	MPGHLDVIEIPSADPITIALGGDNDIVIAQLHDDGRRASVYFDVQHANAIAAAILSLAKHFSGR*
Ga0070671_1012395272	3300005355	Switchgrass Rhizosphere	MSGHLDVIEVPSTEPITVALGGDNDIVIAQLHNDGRRASVYFDVRHANAIAAAILTLAKDFSGR*
Ga0070667_1013296451	3300005367	Switchgrass Rhizosphere	MPGHLDVIEISSADPITIALGGDNDIVIAQLHDDGRRASVYFDVQHANAIAAAILSLAKHFSGR*
Ga0070701_111974232	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	LDVIEIPSADPITVALGGDNDIVIAQLRDDGRRASVYFDVQHANAIAAAILMLAKDFSGR
Ga0070678_1000528741	3300005456	Miscanthus Rhizosphere	MPGHLDVIEIPSADPITVALGGDNDIVIAQLHDDGRRASVYFDVKHANAIAAAILTLAKNFSGR*
Ga0070662_1000848001	3300005457	Corn Rhizosphere	MPGHLDVIEIPSADPITVALGGDNDIVIAQLRDDGRRASVYFD
Ga0073909_101331941	3300005526	Surface Soil	IEVPSTEPITVALGGDNDIVIAQLHNDGRRASVYFDVRHANAIAAAILTLAKDFSGR*
Ga0070672_1018403591	3300005543	Miscanthus Rhizosphere	MPGHLDVIEIPSADPITVALGGDNDIVIAQLHDDGRRASVYFDVQHANAIAAAILTLAKHFSGR*
Ga0070686_1017267521	3300005544	Switchgrass Rhizosphere	MPGHLDVIEIPSADPITVALGGDNDIVIAQLHDDGRRASVYFDV
Ga0070696_1012473302	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MPGHLDVIEIPSADPITVALGGNNDIVIAQLHDDGRRASVYFDVQHANAIAAAILTLAKHFSGR*
Ga0070665_1000175192	3300005548	Switchgrass Rhizosphere	MPGHLDVIEIPSADPITVAPGGDNDIVIAQLRDDGRRASVYFDVQHANAIAAAILTLAKDFSGR*
Ga0070665_1000989888	3300005548	Switchgrass Rhizosphere	MPGHLDVIEIPSADPITVALGGDNDIVIAQLHDDGRRASVYFDVQHANAIAAAILTVAKDFSGR*
Ga0068857_1023299671	3300005577	Corn Rhizosphere	MPGHLDVIEIPSADPITVALGGDNDIVIAQLHDDGRRASVYFDVQHANAIAAAILTLAKDFSGR*
Ga0070702_1001671231	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MPGHLDVIEIPSTDPITVALGGNNDIVIAQLHDDGRRASVYFDVQHANAIAAAILTLAKHFSGR*
Ga0068852_1000860233	3300005616	Corn Rhizosphere	MPGHLDVIEIPSADPITMALGGDNDIVIAQLHDDGRRASVYFDVQHANA
Ga0068866_100081354	3300005718	Miscanthus Rhizosphere	MPGHLDVIEIPSADPITIALGGDNDIVIAQLHDDGRRASVYFDVQHANAIAAAILTLAKHFSGR*
Ga0068860_1001242481	3300005843	Switchgrass Rhizosphere	MPGHLDVIEIPSADPITVALGGDNDIVIAQLHDDGRRASVYFDVQHANAIAAAIL
Ga0075422_103900592	3300006196	Populus Rhizosphere	PMPGHLDVIEIPSADPITVALGGDNDIVIAQLRDDGRRASVYFDVQHANAIAAAILTLAKDFSGR*
Ga0097621_1009522172	3300006237	Miscanthus Rhizosphere	MPGHLDVIEIPSADPITVALGGDNDIVIAQLRADGRRASVYFDVQHANAIAAAILTLAKDFSGR*
Ga0068871_1018586831	3300006358	Miscanthus Rhizosphere	RPDTTEATMSGNLDVIEVPSTEPITVALGEDNDIVIAQLDNDGRRASVYFDVRHANAIAAAILTLAKDFSGR*
Ga0075433_108446662	3300006852	Populus Rhizosphere	MPGHLDVIEIPSADPITVALGGNNDIVIAQLHDDGRRASVY
Ga0075425_1012548022	3300006854	Populus Rhizosphere	MPGHLDVIEIPSADPITVALGGNNDIVIAQLHDDGRRASVYFDVQHANAIAAAILTLAKDFSGR*
Ga0075435_1016431782	3300007076	Populus Rhizosphere	MPGHLDVIEIPSADPITVALGGNNDIVIAQLHDDGRRASVYFDVQH
Ga0105247_112303261	3300009101	Switchgrass Rhizosphere	MPGHLDVIEIPSADPITMALGGDNDIVIAQLHDDGRRASVYFDVKHANAIAAAILTLAKHFSGR*
Ga0111538_101775693	3300009156	Populus Rhizosphere	MPGHLDVIEISSADPITIALGGDNDIVIAQLHDDGRRASVYFDVQHANAIA
Ga0111538_118043651	3300009156	Populus Rhizosphere	MPGHLDVIEIPSADPITIALGGDNDIVIAQLHDDGRRASVYFDVQHANAIA
Ga0075423_120367512	3300009162	Populus Rhizosphere	MPGHLDVIEIPSADPITIALGGDNDIVIAQLHDDGRRASVYFDVQHANAIAAAILTLAKDFSGR*
Ga0105248_131486931	3300009177	Switchgrass Rhizosphere	TDPITVALGGNNDIVIAQLHDDGRRASVYFDVQHANAIAAAILTLAKDFSGR*
Ga0134127_108828091	3300010399	Terrestrial Soil	MPGHLDVIEIPSADLITVALGGNNDIVIAQLHDDGRRASVYFDVQHANAIAAAILTLAKHFSGR*
Ga0134122_105676711	3300010400	Terrestrial Soil	MPGHLDVIEIPSADPITVALGGNNDIVIAQLHDDGRRASVYFDV*
Ga0105246_109836171	3300011119	Miscanthus Rhizosphere	MPGHLDVIEIPSADPITVAPGGDNDIVIAQLRDDGRRASVYFDVQHANAIAA
Ga0157325_10116021	3300012485	Arabidopsis Rhizosphere	MPGHLDVIEIPSADPITMALGGDNDIVIAQLHDDGRRASVYF
Ga0157339_10678022	3300012505	Arabidopsis Rhizosphere	MPGHLDVIEIPSADPITVALGGNNDIVIAQLHDDGRRASVYFDVQQANAIAAAILTLAKDFSGR*
Ga0157285_101927203	3300012897	Soil	MPGHLDVIEIPSTDPITVALGGDNDIVIAQLHDDGRRASVYFDVEHANAIAAAILTLAKHFSGR*
Ga0157288_103224302	3300012901	Soil	MPGHLDVIEIPSADPITVALGGDNDIVIAQLRDDGRRASVYFDVQHANAIA
Ga0157286_104763601	3300012908	Soil	TDPITVALGGDNDIVIAQLHDHGRRATVYFDVQHANAIAAAILTLAKHFSGR*
Ga0157301_100342623	3300012911	Soil	IEIPSADPITVAPGGDNDIVIAQLRDDGRRASVYFDVQHANAIAAAILMLAKDFSGR*
Ga0157310_104299321	3300012916	Soil	MPGHLDVIEIPSADPITMALGGDNDIVIAQLHDDGRRASVYFDVEHANAIAAAILT
Ga0164302_117781762	3300012961	Soil	MPGHLDVIEIPSADPITVALGGDNDIVIAQLRDDALRASVYFDVQHANAIAAAILTLAKDFSGR*
Ga0164309_117867733	3300012984	Soil	DGGTMPGHLDVIEIPSADPITVALGGNNDIVIAQLHDDGRRASVYFDVQHANAIAAAILTLAKHFSGR*
Ga0157374_106150772	3300013296	Miscanthus Rhizosphere	MPGHLDVIEIPSADPITMALGGDNDIVIAQLHDDGRRASVYFDVQHANAIAAAILTLAKHFSGS*
Ga0157374_111347752	3300013296	Miscanthus Rhizosphere	PGHLDVIEIPSADPITVALGGDNDIVIAQLHEDGRRASVYFDVEHANAIAAAILTLAKHFSGR*
Ga0157378_107718551	3300013297	Miscanthus Rhizosphere	MPGHLDVIEIPSADPITMALGGDNDIVIAQLHDDGRRASVYFDVQHANAIAAAILTLAKHFS
Ga0157378_113932762	3300013297	Miscanthus Rhizosphere	MPGHLDVIEIPSADPITVALGGDNDIVIAQLHDDGRRASVYFDVEHAN
Ga0163162_117399932	3300013306	Switchgrass Rhizosphere	MPGHLDVIEIPSADPITVALGGNNDIVIAQLHDDGRRASVYFDVQQANAIAAAILTLAKHFSGR*
Ga0157375_101093457	3300013308	Miscanthus Rhizosphere	MPGHLDVIEIPSADPITVAPGGDNDIVIAQLRDDGRRASVYFDVQHANAIAAAIL
Ga0163163_1006157210	3300014325	Switchgrass Rhizosphere	MPGHLDVIEIPSADPITVAPGGDNDIVIAQLRDDGRRASVYFDVQHANAI
Ga0157379_118645641	3300014968	Switchgrass Rhizosphere	MPGHLDVIEISSADPITIALGGDNDIVIAQLHDDGRRASVYFDVQHANAIAAAILTLAKHFSGR*
Ga0157376_100614881	3300014969	Miscanthus Rhizosphere	MPGHLDVIEIPSADPITMALGGDNDIVIAQLHDDGRRASVYFDVQHANAIAAAI
Ga0132258_115339541	3300015371	Arabidopsis Rhizosphere	MPGHLDVIEIPSADPITVALGGNNDIVIAQLHDDGRRASVYFDVQHANAIAA
Ga0132258_131986362	3300015371	Arabidopsis Rhizosphere	MPGHLDVIEIPSADPITVALGGNNDIVIAQLHDDGRRASVYFDVQ
Ga0132256_1000725402	3300015372	Arabidopsis Rhizosphere	MPGHLDVIEIPSADPITVALGGNDDIVIAQLHDDGRRASVYFDVQHANAIAAAILSLAKHFSGR*
Ga0132257_1005791022	3300015373	Arabidopsis Rhizosphere	DNIAPPGTTEATMPGHLDVIEIPSADPITVALGGDNDIVIAQLRDDGRRASVYFDVQHANAIAAAILTLAKDFSGR*
Ga0132255_1015008903	3300015374	Arabidopsis Rhizosphere	MPGHLDVIEIPSADPITVALGGNNDIVIAQLHDDGRRASVYFDVQHANAIAAAILT
Ga0163161_103290682	3300017792	Switchgrass Rhizosphere	MPGHLDVIEIPSADPITVALGGDNDIVIAQLHDDGRRASVYFDVEHANAIAAAILTLAKNFSGR
Ga0163161_113235111	3300017792	Switchgrass Rhizosphere	MSGHLDVIEVPSTEPITVALGGDNNIVIAQLHNDGRRATVHFDVRHANAIAAAI
Ga0190274_130483881	3300018476	Soil	MPGHLDVIEIPSADPITVALGGDNDIVIAQLRDDGRRASVFFDVQHANAIAAAILTLAKDFSGR
Ga0173481_108834523	3300019356	Soil	MPGHLDVIEIPSTDPITVALGGDNDIVIAQLHDDGRRASVYFDVQHANAIAAAILMLAKDFSGR
Ga0173479_101442252	3300019362	Soil	MPGHLDVIEIPSADPITMALGGDNDIVIAQLHDDGRRASVYFDVQHANAIAAAILTLAKHFSGR
Ga0222622_114602742	3300022756	Groundwater Sediment	MSGHLDVIEVPSTEPITMALGGNNDIVIAQLHDNGRSGVFISTSSMQTPSPAAILTLAKDFSGR
Ga0207673_10031003	3300025290	Corn, Switchgrass And Miscanthus Rhizosphere	MPGHLDVIEIPSADPITMALGGDNDIVIAQLHDDGRRASVYFDVQHAN
Ga0207656_101929362	3300025321	Corn Rhizosphere	MPGHLDVIEIPSADPITIALGGDNDIVIAQLHDDGRRASVYFDVQHANAIAAAILSLAKHFSGR
Ga0207682_100108456	3300025893	Miscanthus Rhizosphere	MPGHLDVIEIPSADPITVAPGGDNDIVIAQLRDDGRRASVYFDVQHANAIAAAILMLAKDFSGR
Ga0207642_100731182	3300025899	Miscanthus Rhizosphere	MPGHLDVIEISSADPITIALGGDNDIVIAQLHDDGRRASVYFDVQHANAIAAAILTLAKHFSGR
Ga0207688_100700114	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MPGHLDVIEIPSADPITVALGGDNDIVIAQLHDDGRRASVYFDVQHANAIAAAILTLAKHFSGR
Ga0207680_101351921	3300025903	Switchgrass Rhizosphere	MPGHLDVIEIPSADPITVALGGDNDIVIAQLHDDGRRASVYFDVKHANAIAAAILTLAKHFSGR
Ga0207680_108264272	3300025903	Switchgrass Rhizosphere	HLDVIEIPSADPITMALGGDNDIVIAQLHDDGRRASVYFDVQHANAIAAAILTLAKHFSG
Ga0207643_100549213	3300025908	Miscanthus Rhizosphere	MPGHLDVIEIPSADPITMALGGDNDIVIAQLHDDGRRASVYFDVQ
Ga0207662_112431721	3300025918	Switchgrass Rhizosphere	MSGHLDVIEVPSTEPITVALGGDKDIVIAQLHNDGRRASVYFDVRHANAIAAAILTLAKDFSGR
Ga0207649_101426651	3300025920	Corn Rhizosphere	MPGHLDVIEIPCTNPITVALGGNNDIVIAQLHDDGRRASVYFDVQHANAIAAAILTLAKDFSGR
Ga0207681_103549461	3300025923	Switchgrass Rhizosphere	MPGRLDVIEIPSADPITVALGGDNDIVIAQLRDDGRRASVYFDVQHANAIAAAILMLAKDFSGR
Ga0207681_109722602	3300025923	Switchgrass Rhizosphere	MPGHLDVIEIPSADPITVALGGDNDIVIAQLHDDGRRASVYFDVQHANAIAAAILTLAKDFSGR
Ga0207681_116321763	3300025923	Switchgrass Rhizosphere	MPGHLDVIEIPSTDPITVALGGDNDIVIAQLHDHGRRATVYFDVQHANAIAAAILTLAKHFSGR
Ga0207694_116829911	3300025924	Corn Rhizosphere	MPGHLDVIEIPSADPITMALGGDNDIVIAQLHDDGRRASVYFDVQHANAIAAAILMLAKDFSGR
Ga0207650_100468096	3300025925	Switchgrass Rhizosphere	MPGHLDVIEIPSADLITVALGGNNDIVIAQLHDDGRRASVYFDVQHANAIAAAILTLAKDFSGR
Ga0207650_107480081	3300025925	Switchgrass Rhizosphere	SADPITVALGGDNDIVIAQLHDDGRRASVYFDVKHANAIAAAILTLAKHFSGR
Ga0207659_103946032	3300025926	Miscanthus Rhizosphere	MPGHLDVIEIPSADPITVALGGDNDIVIAQLHDDGRRASVYFDVKHANAIAAAILTLAKNFSGR
Ga0207659_107000512	3300025926	Miscanthus Rhizosphere	MPGHLDVIEIPSTDPITVALGGNNDIVIAQLHDDGRRASVYFDVQDANAIAAAILTLAKHFQERGS
Ga0207644_104811133	3300025931	Switchgrass Rhizosphere	HLDVIEISSADPITIALGGDNDIVIAQLHDDGRRASVYFDVQHANAIAAAILSLAKHFSG
Ga0207644_113197811	3300025931	Switchgrass Rhizosphere	MPGHLDVIEIPSADPITVALGGNNDIVVAQLHDDGRRASVYFDVQHANAIAAAILTLARDFSGR
Ga0207690_104616832	3300025932	Corn Rhizosphere	MPGHLDVIEIPSTDPITVALGGDNDIVIAQLHDDGRRASVYFDVQHANAIAAAILTLAKHFSGR
Ga0207706_100101209	3300025933	Corn Rhizosphere	MPGHLDVIEIPSADPITIALGGDNDIVIAQLHDDGRRASVYFDVQHANAIAAAILTLAKHFSGR
Ga0207686_112034522	3300025934	Miscanthus Rhizosphere	MPGHLDVIEIPSADPITMALGGDNDIVIAQLHDDGRRASVYFDVQHANAIAAAILTLAK
Ga0207686_113352691	3300025934	Miscanthus Rhizosphere	ADPITMALGGDNDIVIAQLHDDGRRASVYFDVQHANAIAAAILTLAKHFSGR
Ga0207670_115672271	3300025936	Switchgrass Rhizosphere	MPGHLDVIEIPCTNPITVALGGNNDIVIAQLHDDGRRASVYFDVQHANAIAAAILSLAKHFSGR
Ga0207704_104022801	3300025938	Miscanthus Rhizosphere	MPGHLDVIEIPSADPITVAPGGDNDIVIAQLRDDGRRASVYFDVQHANAIAAAILTLAKDFSGR
Ga0207691_106192102	3300025940	Miscanthus Rhizosphere	MPGHLDVIEISSADPITIALGGDNDIVIAQLHDDGRRASVYFDVQHANAIAAAILSLAKHFSGR
Ga0207689_105689271	3300025942	Miscanthus Rhizosphere	MPGHLDVIEIPSADPITMALGGDNDIVIAQLHDDGRRASVYFDVEHANAIAAAILTLAKHFSGR
Ga0207677_100836976	3300026023	Miscanthus Rhizosphere	MPGHLDVIEIPSADPITVALGGDNDIVIAQLHDDGRRASVYFDVEHANAI
Ga0207703_119295912	3300026035	Switchgrass Rhizosphere	ADPITVALGGDNDIVIAQLHDDGRRASVYFDVQHANAIAAAILTLAKHFSGR
Ga0207639_104605883	3300026041	Corn Rhizosphere	MPGHLDVIEIPSADPITVALGGDNDIVIAQLHDDGRRASVYFDVQHANAIAAAILT
Ga0207639_106374862	3300026041	Corn Rhizosphere	SADPITVALGGDNDIVIAQLHDDGRRASVYFDVKHANAIAAAILTLAKNFSGR
Ga0207708_112518303	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MPGHLDVIEIPSADPITVALGGDNDIVIAQLRDDGRRASVYFDVQ
Ga0207641_101191496	3300026088	Switchgrass Rhizosphere	MPGHLDVIEIPSADPITVALGGDNDIVIAQLRDDGRRASVYFDVQHANAIAAAILMLAKD
Ga0207648_115307333	3300026089	Miscanthus Rhizosphere	STTEEAPMPGHLDVIEIPSADPITAALGGNNDIVIAQLHDDGRRASVYFDVQHANAIAAANLTLAKDFSGR
Ga0207676_105442901	3300026095	Switchgrass Rhizosphere	TTEATMSGHLDVIEVPSTEPITVALGGDKDIVIAQLHNDGRRASVYFDVRHANAIAAAILTLAKDFSGR
Ga0207676_124155952	3300026095	Switchgrass Rhizosphere	MSGHLDVIEVPSTEPITVALGGDKDIVIAQLHNDGRRASV
Ga0207674_103487082	3300026116	Corn Rhizosphere	MPGHLDVIEIPCTNPITVALGGNNDIVIAQLHDDGRRASVYFDVQHANAIAAAILTLAKHFSGR
Ga0207683_100795715	3300026121	Miscanthus Rhizosphere	PSADPITVALGGDNDIVIAQLHDDGRRASVYFDVQHANAIAAAILTLAKHFSGR
Ga0207683_111531601	3300026121	Miscanthus Rhizosphere	MPGHLDVIEIPSADPITVALGGDNDIVIAQLHDDGRRASVYFD
Ga0207698_101766601	3300026142	Corn Rhizosphere	MPGHLDVIEIPSADPITVALGGDNDIVIAQLHDDGRRASVYFDVKHANAIAAAI
Ga0268266_106437221	3300028379	Switchgrass Rhizosphere	PGHLDVIEIPSADPITVALGGNNDIVIAQLHDDGRRASVYFDVQHANAIAAAILTLAKHFSGR
Ga0247827_106242002	3300028889	Soil	MPGHLDVIEIPSADPITVALGGNNDIVIAQLHDDGRRASVYFDVQQANAIAAAILTLAKHFSGR
Ga0310892_109232943	3300031858	Soil	MPGHLDVIEIPSADPITVALGGNNDIVIAQLHDDGRRASVYFDVQHANAIAAAILTLAKDFSGR
Ga0310884_102013304	3300031944	Soil	SSADPITIALGGDNDIVIAQLHDDGRRASVYFDVQHANAIAAAILSLAKHFSGR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F061956

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences