Metagenome / Metatranscriptome Family F061704

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F061704
Family Type	Metagenome / Metatranscriptome
Number of Sequences	131
Average Sequence Length	69 residues
Representative Sequence	QDELSFFRRNFSRYTPAGPFYAIREESRFKAIPVSFVRSITRFPRRRINGPAILLFLGFLLFVLDFFV
Number of Associated Samples	100
Number of Associated Scaffolds	131

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	7.75 %
% of genes near scaffold ends (potentially truncated)	77.10 %
% of genes from short scaffolds (< 2000 bps)	85.50 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.30

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (93.893 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (43.511 % of family members)
Environment Ontology (ENVO)	Unclassified (40.458 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (45.802 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 37.50% β-sheet: 0.00% Coil/Unstructured: 62.50%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.30
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.30
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 131 Family Scaffolds
PF01112	Asparaginase_2	76.34
PF03449	GreA_GreB_N	5.34
PF01272	GreA_GreB	3.82
PF07883	Cupin_2	1.53
PF07228	SpoIIE	1.53
PF02922	CBM_48	1.53
PF04185	Phosphoesterase	0.76
PF07676	PD40	0.76
PF00082	Peptidase_S8	0.76
PF00144	Beta-lactamase	0.76

COG ID	Name	Functional Category	% Frequency in 131 Family Scaffolds
COG1446	Isoaspartyl peptidase or L-asparaginase, Ntn-hydrolase superfamily	Amino acid transport and metabolism [E]	76.34
COG0782	Transcription elongation factor, GreA/GreB family	Transcription [K]	9.16
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.76
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.76
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.76
COG3511	Phospholipase C	Cell wall/membrane/envelope biogenesis [M]	0.76

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	93.89 %
Unclassified	root	N/A	6.11 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	93.89 %
Unclassified	root	N/A	6.11 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	93.89 %
Unclassified	root	N/A	6.11 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	78.63 %
Unclassified	root	N/A	6.11 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	6.11 %
Unclassified	root	N/A	6.11 %

Name	Rank	Taxonomy	Distribution
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	6.11 %
Unclassified	root	N/A	6.11 %

Name	Rank	Taxonomy	Distribution
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6.11 %
Unclassified	root	N/A	6.11 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459010\|GIO7OMY02HX4DI	All Organisms → cellular organisms → Bacteria → Acidobacteria	507	Open in IMG/M
3300002557\|JGI25381J37097_1065683	All Organisms → cellular organisms → Bacteria → Acidobacteria	583	Open in IMG/M
3300002908\|JGI25382J43887_10178110	All Organisms → cellular organisms → Bacteria → Acidobacteria	1048	Open in IMG/M
3300005167\|Ga0066672_10112563	All Organisms → cellular organisms → Bacteria	1674	Open in IMG/M
3300005167\|Ga0066672_10390172	All Organisms → cellular organisms → Bacteria → Acidobacteria	911	Open in IMG/M
3300005174\|Ga0066680_10335728	All Organisms → cellular organisms → Bacteria → Acidobacteria	964	Open in IMG/M
3300005447\|Ga0066689_10529125	All Organisms → cellular organisms → Bacteria → Acidobacteria	745	Open in IMG/M
3300005554\|Ga0066661_10251669	All Organisms → cellular organisms → Bacteria → Acidobacteria	1093	Open in IMG/M
3300005556\|Ga0066707_10283070	All Organisms → cellular organisms → Bacteria → Acidobacteria	1085	Open in IMG/M
3300005557\|Ga0066704_10125067	All Organisms → cellular organisms → Bacteria	1709	Open in IMG/M
3300005560\|Ga0066670_10386001	All Organisms → cellular organisms → Bacteria → Acidobacteria	857	Open in IMG/M
3300005561\|Ga0066699_10374961	All Organisms → cellular organisms → Bacteria → Acidobacteria	1018	Open in IMG/M
3300005561\|Ga0066699_11004938	All Organisms → cellular organisms → Bacteria → Acidobacteria	578	Open in IMG/M
3300005568\|Ga0066703_10325250	All Organisms → cellular organisms → Bacteria → Acidobacteria	927	Open in IMG/M
3300005568\|Ga0066703_10475454	All Organisms → cellular organisms → Bacteria → Acidobacteria	746	Open in IMG/M
3300005568\|Ga0066703_10787383	All Organisms → cellular organisms → Bacteria → Acidobacteria	544	Open in IMG/M
3300005576\|Ga0066708_11051757	All Organisms → cellular organisms → Bacteria → Acidobacteria	505	Open in IMG/M
3300005586\|Ga0066691_10454916	All Organisms → cellular organisms → Bacteria	765	Open in IMG/M
3300006032\|Ga0066696_10091177	All Organisms → cellular organisms → Bacteria → Acidobacteria	1812	Open in IMG/M
3300006052\|Ga0075029_100418965	All Organisms → cellular organisms → Bacteria → Acidobacteria	873	Open in IMG/M
3300006052\|Ga0075029_100614003	All Organisms → cellular organisms → Bacteria → Acidobacteria	727	Open in IMG/M
3300006102\|Ga0075015_100076553	All Organisms → cellular organisms → Bacteria	1640	Open in IMG/M
3300006162\|Ga0075030_100342877	All Organisms → cellular organisms → Bacteria	1192	Open in IMG/M
3300006796\|Ga0066665_10356416	All Organisms → cellular organisms → Bacteria → Acidobacteria	1195	Open in IMG/M
3300007258\|Ga0099793_10121862	All Organisms → cellular organisms → Bacteria → Acidobacteria	1220	Open in IMG/M
3300007258\|Ga0099793_10140434	All Organisms → cellular organisms → Bacteria → Acidobacteria	1140	Open in IMG/M
3300009038\|Ga0099829_11266153	All Organisms → cellular organisms → Bacteria → Acidobacteria	610	Open in IMG/M
3300009088\|Ga0099830_10045465	All Organisms → cellular organisms → Bacteria → Acidobacteria	3069	Open in IMG/M
3300009088\|Ga0099830_11545168	All Organisms → cellular organisms → Bacteria → Acidobacteria	553	Open in IMG/M
3300009088\|Ga0099830_11812816	All Organisms → cellular organisms → Bacteria → Acidobacteria	510	Open in IMG/M
3300009089\|Ga0099828_10870488	Not Available	805	Open in IMG/M
3300009090\|Ga0099827_10554424	All Organisms → cellular organisms → Bacteria → Acidobacteria	989	Open in IMG/M
3300009090\|Ga0099827_11972607	All Organisms → cellular organisms → Bacteria → Acidobacteria	507	Open in IMG/M
3300009137\|Ga0066709_101690160	All Organisms → cellular organisms → Bacteria → Acidobacteria	899	Open in IMG/M
3300009143\|Ga0099792_10670443	All Organisms → cellular organisms → Bacteria → Acidobacteria	668	Open in IMG/M
3300010159\|Ga0099796_10444273	All Organisms → cellular organisms → Bacteria → Acidobacteria	576	Open in IMG/M
3300010304\|Ga0134088_10185816	All Organisms → cellular organisms → Bacteria → Acidobacteria	994	Open in IMG/M
3300010335\|Ga0134063_10340526	All Organisms → cellular organisms → Bacteria → Acidobacteria	727	Open in IMG/M
3300011270\|Ga0137391_10027229	All Organisms → cellular organisms → Bacteria	4771	Open in IMG/M
3300011270\|Ga0137391_10346043	All Organisms → cellular organisms → Bacteria → Acidobacteria	1277	Open in IMG/M
3300011271\|Ga0137393_10025452	All Organisms → cellular organisms → Bacteria → Acidobacteria	4400	Open in IMG/M
3300011271\|Ga0137393_10559098	All Organisms → cellular organisms → Bacteria → Acidobacteria	981	Open in IMG/M
3300011271\|Ga0137393_11125842	All Organisms → cellular organisms → Bacteria → Acidobacteria	667	Open in IMG/M
3300012096\|Ga0137389_10025082	All Organisms → cellular organisms → Bacteria	4249	Open in IMG/M
3300012096\|Ga0137389_10430994	All Organisms → cellular organisms → Bacteria → Acidobacteria	1128	Open in IMG/M
3300012096\|Ga0137389_10493928	All Organisms → cellular organisms → Bacteria	1049	Open in IMG/M
3300012199\|Ga0137383_10544956	All Organisms → cellular organisms → Bacteria → Acidobacteria	849	Open in IMG/M
3300012202\|Ga0137363_11388129	All Organisms → cellular organisms → Bacteria → Acidobacteria	592	Open in IMG/M
3300012203\|Ga0137399_10745298	All Organisms → cellular organisms → Bacteria → Acidobacteria	825	Open in IMG/M
3300012205\|Ga0137362_10015826	All Organisms → cellular organisms → Bacteria → Acidobacteria	5686	Open in IMG/M
3300012205\|Ga0137362_10660820	All Organisms → cellular organisms → Bacteria → Acidobacteria	899	Open in IMG/M
3300012205\|Ga0137362_11439260	All Organisms → cellular organisms → Bacteria → Acidobacteria	575	Open in IMG/M
3300012207\|Ga0137381_10520893	All Organisms → cellular organisms → Bacteria → Acidobacteria	1037	Open in IMG/M
3300012209\|Ga0137379_11394204	All Organisms → cellular organisms → Bacteria → Acidobacteria	604	Open in IMG/M
3300012211\|Ga0137377_10908003	All Organisms → cellular organisms → Bacteria → Acidobacteria	812	Open in IMG/M
3300012211\|Ga0137377_11088871	All Organisms → cellular organisms → Bacteria → Acidobacteria	729	Open in IMG/M
3300012285\|Ga0137370_10935202	Not Available	535	Open in IMG/M
3300012354\|Ga0137366_10132309	Not Available	1881	Open in IMG/M
3300012357\|Ga0137384_10198467	All Organisms → cellular organisms → Bacteria → Acidobacteria	1679	Open in IMG/M
3300012357\|Ga0137384_10918926	All Organisms → cellular organisms → Bacteria → Acidobacteria	705	Open in IMG/M
3300012361\|Ga0137360_11561408	All Organisms → cellular organisms → Bacteria → Acidobacteria	565	Open in IMG/M
3300012361\|Ga0137360_11880586	All Organisms → cellular organisms → Bacteria → Acidobacteria	504	Open in IMG/M
3300012917\|Ga0137395_10574878	All Organisms → cellular organisms → Bacteria → Acidobacteria	814	Open in IMG/M
3300012924\|Ga0137413_10243168	All Organisms → cellular organisms → Bacteria → Acidobacteria	1232	Open in IMG/M
3300012925\|Ga0137419_11761144	All Organisms → cellular organisms → Bacteria → Acidobacteria	529	Open in IMG/M
3300012927\|Ga0137416_11203969	All Organisms → cellular organisms → Bacteria → Acidobacteria	682	Open in IMG/M
3300012929\|Ga0137404_10648927	All Organisms → cellular organisms → Bacteria → Acidobacteria	952	Open in IMG/M
3300012972\|Ga0134077_10522029	All Organisms → cellular organisms → Bacteria → Acidobacteria	528	Open in IMG/M
3300014166\|Ga0134079_10375301	All Organisms → cellular organisms → Bacteria → Acidobacteria	654	Open in IMG/M
3300015053\|Ga0137405_1242594	All Organisms → cellular organisms → Bacteria → Acidobacteria	1311	Open in IMG/M
3300015054\|Ga0137420_1418811	Not Available	6270	Open in IMG/M
3300015241\|Ga0137418_10003983	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	13532	Open in IMG/M
3300015356\|Ga0134073_10094508	All Organisms → cellular organisms → Bacteria → Acidobacteria	875	Open in IMG/M
3300018431\|Ga0066655_10227761	All Organisms → cellular organisms → Bacteria	1173	Open in IMG/M
3300018433\|Ga0066667_10590903	All Organisms → cellular organisms → Bacteria → Acidobacteria	925	Open in IMG/M
3300020001\|Ga0193731_1000073	All Organisms → cellular organisms → Bacteria	32566	Open in IMG/M
3300020199\|Ga0179592_10003701	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6464	Open in IMG/M
3300020199\|Ga0179592_10038811	All Organisms → cellular organisms → Bacteria	2156	Open in IMG/M
3300020579\|Ga0210407_10004516	All Organisms → cellular organisms → Bacteria	10941	Open in IMG/M
3300020579\|Ga0210407_10022088	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4725	Open in IMG/M
3300020581\|Ga0210399_11605145	All Organisms → cellular organisms → Bacteria → Acidobacteria	501	Open in IMG/M
3300021171\|Ga0210405_11275391	All Organisms → cellular organisms → Bacteria → Acidobacteria	541	Open in IMG/M
3300021406\|Ga0210386_11158578	All Organisms → cellular organisms → Bacteria → Acidobacteria	655	Open in IMG/M
3300021478\|Ga0210402_10065862	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3193	Open in IMG/M
3300021478\|Ga0210402_10231103	All Organisms → cellular organisms → Bacteria	1705	Open in IMG/M
3300021478\|Ga0210402_11796161	All Organisms → cellular organisms → Bacteria → Acidobacteria	539	Open in IMG/M
3300021479\|Ga0210410_10792253	All Organisms → cellular organisms → Bacteria → Acidobacteria	832	Open in IMG/M
3300021559\|Ga0210409_10394864	All Organisms → cellular organisms → Bacteria	1238	Open in IMG/M
3300021559\|Ga0210409_10921765	All Organisms → cellular organisms → Bacteria → Acidobacteria	748	Open in IMG/M
3300024330\|Ga0137417_1350416	All Organisms → cellular organisms → Bacteria → Acidobacteria	1526	Open in IMG/M
3300026277\|Ga0209350_1007972	All Organisms → cellular organisms → Bacteria	3539	Open in IMG/M
3300026277\|Ga0209350_1114164	All Organisms → cellular organisms → Bacteria → Acidobacteria	620	Open in IMG/M
3300026304\|Ga0209240_1103683	All Organisms → cellular organisms → Bacteria → Acidobacteria	1012	Open in IMG/M
3300026324\|Ga0209470_1195736	All Organisms → cellular organisms → Bacteria → Acidobacteria	860	Open in IMG/M
3300026328\|Ga0209802_1078544	All Organisms → cellular organisms → Bacteria	1538	Open in IMG/M
3300026329\|Ga0209375_1255826	All Organisms → cellular organisms → Bacteria → Acidobacteria	584	Open in IMG/M
3300026329\|Ga0209375_1281524	All Organisms → cellular organisms → Bacteria → Acidobacteria	545	Open in IMG/M
3300026334\|Ga0209377_1182102	All Organisms → cellular organisms → Bacteria → Acidobacteria	730	Open in IMG/M
3300026343\|Ga0209159_1093184	All Organisms → cellular organisms → Bacteria → Acidobacteria	1326	Open in IMG/M
3300026361\|Ga0257176_1018516	All Organisms → cellular organisms → Bacteria → Acidobacteria	989	Open in IMG/M
3300026497\|Ga0257164_1083831	All Organisms → cellular organisms → Bacteria → Acidobacteria	541	Open in IMG/M
3300026499\|Ga0257181_1041229	All Organisms → cellular organisms → Bacteria → Acidobacteria	750	Open in IMG/M
3300026515\|Ga0257158_1082865	All Organisms → cellular organisms → Bacteria → Acidobacteria	622	Open in IMG/M
3300026523\|Ga0209808_1264964	All Organisms → cellular organisms → Bacteria → Acidobacteria	549	Open in IMG/M
3300026529\|Ga0209806_1209240	All Organisms → cellular organisms → Bacteria → Acidobacteria	673	Open in IMG/M
3300026542\|Ga0209805_1242734	All Organisms → cellular organisms → Bacteria → Acidobacteria	719	Open in IMG/M
3300026550\|Ga0209474_10099134	All Organisms → cellular organisms → Bacteria → Acidobacteria	1964	Open in IMG/M
3300026555\|Ga0179593_1042412	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2007	Open in IMG/M
3300026557\|Ga0179587_10341645	All Organisms → cellular organisms → Bacteria → Acidobacteria	970	Open in IMG/M
3300027605\|Ga0209329_1062945	Not Available	797	Open in IMG/M
3300027616\|Ga0209106_1101640	All Organisms → cellular organisms → Bacteria → Acidobacteria	645	Open in IMG/M
3300027643\|Ga0209076_1053553	All Organisms → cellular organisms → Bacteria → Acidobacteria	1143	Open in IMG/M
3300027643\|Ga0209076_1065976	All Organisms → cellular organisms → Bacteria → Acidobacteria	1028	Open in IMG/M
3300027846\|Ga0209180_10098586	Not Available	1663	Open in IMG/M
3300027846\|Ga0209180_10162775	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1287	Open in IMG/M
3300027846\|Ga0209180_10515751	All Organisms → cellular organisms → Bacteria	668	Open in IMG/M
3300027862\|Ga0209701_10029926	All Organisms → cellular organisms → Bacteria → Acidobacteria	3539	Open in IMG/M
3300027862\|Ga0209701_10078096	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2089	Open in IMG/M
3300027875\|Ga0209283_10168826	All Organisms → cellular organisms → Bacteria → Acidobacteria	1452	Open in IMG/M
3300028047\|Ga0209526_10978967	All Organisms → cellular organisms → Bacteria → Acidobacteria	507	Open in IMG/M
3300030730\|Ga0307482_1012900	All Organisms → cellular organisms → Bacteria	1583	Open in IMG/M
3300031057\|Ga0170834_106880898	All Organisms → cellular organisms → Bacteria → Acidobacteria	791	Open in IMG/M
3300031753\|Ga0307477_10331531	All Organisms → cellular organisms → Bacteria → Acidobacteria	1048	Open in IMG/M
3300031754\|Ga0307475_11045529	All Organisms → cellular organisms → Bacteria → Acidobacteria	640	Open in IMG/M
3300031820\|Ga0307473_10138188	All Organisms → cellular organisms → Bacteria	1366	Open in IMG/M
3300031823\|Ga0307478_10169843	All Organisms → cellular organisms → Bacteria	1741	Open in IMG/M
3300031962\|Ga0307479_10336904	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1491	Open in IMG/M
3300031962\|Ga0307479_10644460	All Organisms → cellular organisms → Bacteria → Acidobacteria	1040	Open in IMG/M
3300032180\|Ga0307471_100336075	All Organisms → cellular organisms → Bacteria → Acidobacteria	1614	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	96.95%
Aquatic	Environmental → Aquatic	3.05%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	96.95%
Sediment	Environmental → Aquatic → Sediment	3.05%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	94.66%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.05%
Loam	Environmental → Terrestrial → Soil → Loam	2.29%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	48.09%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	27.48%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	19.08%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.05%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.29%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	43.51%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	20.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	12.21%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	6.11%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.11%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.82%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	3.05%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.29%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.76%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.76%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.76%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459010	Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)	Environmental	Open in IMG/M
3300002557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015	Environmental	Open in IMG/M
3300015053	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015356	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300020001	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a2	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300026277	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300026328	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)	Environmental	Open in IMG/M
3300026329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)	Environmental	Open in IMG/M
3300026334	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)	Environmental	Open in IMG/M
3300026343	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 (SPAdes)	Environmental	Open in IMG/M
3300026361	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-B	Environmental	Open in IMG/M
3300026497	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-B	Environmental	Open in IMG/M
3300026499	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-B	Environmental	Open in IMG/M
3300026515	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-A	Environmental	Open in IMG/M
3300026523	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157 (SPAdes)	Environmental	Open in IMG/M
3300026529	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)	Environmental	Open in IMG/M
3300026542	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027605	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027616	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300027643	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300030730	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F62_00106960	2170459010	Grass Soil	MNFPFSVRNFSRYTPAGPVPTPFARIPAFKAIPVSFFHSITRFPRRRINGPAILLIMGFLLFALDFFV
JGI25381J37097_10656831	3300002557	Grasslands Soil	NFSRYIPVGPFYSIREESRFKAIPASFFHSLSRLPRSSINGGPILLLIGLLLFVLDFFV*
JGI25382J43887_101781102	3300002908	Grasslands Soil	RGEFFVWFQDELCFFRRNFSRYTPAGPFYAIREESRFKAIPVSFVRSITHFPRNRINGPAILLFLGFLLFVLDFFV*
Ga0066672_101125631	3300005167	Soil	ELSFFRRNFSRYTPAGPFYALREESRFKAIPVSFVRSITRFPRSRINGPAVLLFLGFLLFVLDFFV*
Ga0066672_103901722	3300005167	Soil	PFYAIREESRFKAILASFFHSLSHLPRSCINGGPILLLIGLLLFVLDFFV*
Ga0066680_103357282	3300005174	Soil	GDFSVWFHDELSFFRRNFSRYTPAGPFYALREESRLKAIPVSFVGSITRFPRRRVNRPAILLFLGFLLFLLDFLV*
Ga0066689_105291252	3300005447	Soil	EISVFRRNFSRYTPAGPFYALREESRFKAIPASFFHSLSRLPRSCLNGGPILLLIGLFLFVLDFFV*
Ga0066661_102516692	3300005554	Soil	MWRSRGDFFVWFQDELSFFRRNFSRYTPAGPFYAIRGQSRFKAIPVSFVRSITRFPRRRVNGPAILLFLGLLLFVLDFFV*
Ga0066707_102830701	3300005556	Soil	FSVWFHDELSFFRRNFSRYTPAGPFYALREESRFKAIPVSFVRSITRFPRSRINGPAILLFLGFLLFVLDFFV*
Ga0066704_101250672	3300005557	Soil	MWRCRGEFFVWFQDELCFFRRNFSRYTPAGPFYAIREESRFKAIPVSFVRSITHFPRNRINGPAILLFLGFLLFVLDFFV*
Ga0066670_103860011	3300005560	Soil	NFSRYTPAGPFYAIREESRFRAIPVSFVRSIARFPRSRINGPAILLFLGFLLFVLDFFV*
Ga0066699_103749611	3300005561	Soil	AGPFYAIREESRFRAIPVSFVRSIARFPRSRINGPAILLFLGFLLFVLDFFV*
Ga0066699_110049382	3300005561	Soil	TPAGPFYAIREDSRYKAIPVSFVRSITRFPRRRINGPAVLLFLGFLLFVLDFFV*
Ga0066703_103252501	3300005568	Soil	FRRNFSRYTAIGPFYSPREESRFKAIPTSLIRSMSRLPHSRYNSGPILLLIGFLLFCLDFFV*
Ga0066703_104754542	3300005568	Soil	MWRNRGDFSVWFHDELSFFRRNFSRYTPAGPFYAIREESRFRAIPVSFVRSIARFPRSRINGPAILLFLGFLLFVLDFFV*
Ga0066703_107873832	3300005568	Soil	QDELSFFRRNFSRYTPAGPFYAIRGESRFKAIPVSFLRSITRFPRRRVNGPAILLFLGLLLFVLDFFV*
Ga0066708_110517571	3300005576	Soil	RNFSRYTPAGPFYAIREESRFRAIPVSFVRSIARFPRSRINGPAILLFLGFLLFVLDFFV
Ga0066691_104549162	3300005586	Soil	MWRSRGDFFVWFQDELSFFRRNFSRYTPAGPFYAIRGESRFKAIPVSFVRSITRFPRRRVNGPAILLVLGLLLFVLDFFV*
Ga0066696_100911771	3300006032	Soil	GPFYSIREESRFKAIPASFFHSLSRLPRSSINGGPILLLIGLLLFVLDFFV*
Ga0075029_1004189652	3300006052	Watersheds	FQDELSIFRRNFSRYTVIGPFYSPREDSRFKAIPTSVIRSVRRLPRSPINGGPILLFLGLLLVFLDFLL*
Ga0075029_1006140032	3300006052	Watersheds	YTPAGPFYALREESRFKAIPVSFLHSITRFPRRRINGPAVLLILGLLLFVLDFFI*
Ga0075015_1000765533	3300006102	Watersheds	MWRSRGDFFVWFQDELSFFRRNFSRYTPAGPFYALREESRFKAIPVSFLHSITRFPRRRINGPAVLLILGLLLFVLDFFI*
Ga0075030_1003428772	3300006162	Watersheds	MWRSRGDFFVWFQDELSFFRRNFSRYTPAGPFYALREESRFKAIPVSFLHSITRFPRRRINGPAILLILGFLLLVLDFFI*
Ga0066665_103564161	3300006796	Soil	RGEFSVWVQDEISVFRRNFSRYTPAGPFYAIREESRFKAILASFLHSLSHLPRSCINGGPILLLIGLLLFVLDFFV*
Ga0099793_101218622	3300007258	Vadose Zone Soil	RGEFSVWVQDEISVFRRNFSRYTPAGPFYAIREESRFKAILASFFHSLSHLPRSCINGGPILLLIGLLLFVLDFFV*
Ga0099793_101404341	3300007258	Vadose Zone Soil	RGEFSVWVQDEISVFRRNFSRYTPAGPFYAIREESRFKAIPVSFFHSLSRLPRGSINGGPILLLIGFLLFILDFFI*
Ga0099829_112661531	3300009038	Vadose Zone Soil	GPFYAIRQESRLKAIPVSFLRSITRFPRSRVNGAAILLFLGFLLLVLDFFI*
Ga0099830_100454655	3300009088	Vadose Zone Soil	DELSFFRRNFSRYTPAGPFYAIREESRLKAIPVSFLRSITRFPRRRVNGAAVLLFLGFLLFVLDFFV*
Ga0099830_115451681	3300009088	Vadose Zone Soil	FFRRNFSRYTPAGPFYAIREESRFKAIPVSFVRSITRFPRSRINGPAVLLFLGFLLFVIDFFV*
Ga0099830_118128161	3300009088	Vadose Zone Soil	NRGEFYVFIQDELSVFRRNFSRYTAIGPFYGLREESRFKAIPTSFIRSVSRLPRSRFNVGPILLLIGFLLFILDFFV*
Ga0099828_108704881	3300009089	Vadose Zone Soil	DFSVWFQDELSIFRRNFSRYTPAGPFYAIREESRFKAIPTSFVRSLTRFPRSCINGPAVLLFLGFLLFVLDFFI*
Ga0099827_105544241	3300009090	Vadose Zone Soil	SRYTPAGPFYAIRGESRFKAIPVSFLRSITRFPRRRVNGPAILLFLGLLLFVLDFFV*
Ga0099827_119726072	3300009090	Vadose Zone Soil	FRRNFSRYTPAGPFYAIREKSRFKAIPVSFVRSITHFPRNRINGPAILLFLGFLLFVLDFFV*
Ga0066709_1016901602	3300009137	Grasslands Soil	RYTTIGPFYSVREESRFKAIPATFIRSLGRLTRSRINGGAILLLIGLLLFVLDFFI*
Ga0099792_106704432	3300009143	Vadose Zone Soil	LMWRSRADFSVWFHDELSFFRRNFSRYTPAGPFYAIREESRFKAIPVSFLRSITRFPRRRINGPAVLLALGFLLFLLDFFV*
Ga0099796_104442731	3300010159	Vadose Zone Soil	PFYSIREESRFKAIPASFFHSLSRLPRSSINGGPILLLIGFLLFILDFFI*
Ga0134088_101858161	3300010304	Grasslands Soil	NREDVFVGVHDGISIFRRNFSRYTTIGPFYSVREESRFKAIPATFIRSLGRLTRSRINGGAILLLIGLLLFVLDFFI*
Ga0134063_103405262	3300010335	Grasslands Soil	EFSVWVQDEISVFRRNFSRYTPAGPFYAIREESRFKAIPACFFHSLSHLPRSCINGGPILLLIGLLLFVLDFFV*
Ga0137391_100272291	3300011270	Vadose Zone Soil	ALVWRNRGEFYVFIQDELSVFRRNFSRYTAIGPFYGLREESRFKAIPTSFIRSVSRLPRSRFNVGPILLLIGFLLFILDFFV*
Ga0137391_103460432	3300011270	Vadose Zone Soil	NFSRYTPAGPFYAVRGESRFKAIPVSFVRSITRFPRRRINGPAILLFLGLLLFVLDFFV*
Ga0137393_100254521	3300011271	Vadose Zone Soil	LMWRSRGEFFVWFQDELSFFRRNFSRYTPAGPFYAIREESRLKAIPVSFLRSITRFPRSRVNGAAVLLFLGFLLFVLDFFV*
Ga0137393_105590981	3300011271	Vadose Zone Soil	ISVFRRNFSRYTPAGPFYAIREESRFKAIPVSFFHSLSRLPRGSINGGPILLLIGFLLFILDFFI*
Ga0137393_111258421	3300011271	Vadose Zone Soil	SVREESRFKAIPATFIRSLGRLTRSRINGGAILLLIGLLLFVLDFFI*
Ga0137389_100250821	3300012096	Vadose Zone Soil	VWFQDELSFFRRNFSRYTPAGPFYAVRGESRFKAIPVSFVGSITRFPRRRVNGPAILLFLGLLLFVLDFFV*
Ga0137389_104309941	3300012096	Vadose Zone Soil	IGAALVWRNRDNFSIWVHDEISVFRRNFSRYTTIGPFYSVREESRFKAIPATFIRSLGRLTRSRINGGAILLLIGLLLFVLDFFI*
Ga0137389_104939282	3300012096	Vadose Zone Soil	GEFSVWVQDEISAFRRNFSRYTPAGPFYAIREESRFKAIPACFFHSLSRLPRSCINGGPILLLIGLLLFVLDFFV*
Ga0137364_105312472	3300012198	Vadose Zone Soil	PFYAIREESRYKAIPVSFVRSITRFPRRRINGPAILLFLGFLLFVLDFFV*
Ga0137383_105449561	3300012199	Vadose Zone Soil	WVHDEISVFRRNFSRYTTIGPFYSVREESRFKAIPATFIRSLGRLTRSRINGGAILLLIGLLLFVLDFFI*
Ga0137363_113881292	3300012202	Vadose Zone Soil	FSRYTPAGPFYAIREESRFKAIPASFFHSLSRLPRSCINGGPILLLIGLLLFVLDFFV*
Ga0137399_107452982	3300012203	Vadose Zone Soil	FRRNFSRYTPAGPFYAIREESRFKAILASFFHSLSHLPRSCINGGPILLLIGLLLFVLDFFV*
Ga0137362_100158267	3300012205	Vadose Zone Soil	WFQDELSFFRRNFSRYTPAGPFYAIRGESRFKAIPVSFVRSITRFPRRRINGPAILLFLGLLLFVLDFFV*
Ga0137362_106608202	3300012205	Vadose Zone Soil	SRYTPAGPFYAIREESRFKAILASFFHSLSHLPRSCINGGPILLLIGLLLFVLDFFV*
Ga0137362_114392602	3300012205	Vadose Zone Soil	FRRNFSRYTPAGPFYAIREESRFKAIPVSFLRSITRFPRSRINGSAVLLFLGFLLFVLDFFV*
Ga0137381_105208932	3300012207	Vadose Zone Soil	QDELSFFRRNFSRYTPAGPFYAIREESRFKAIPVSFVRSITRFPRRRINGPAILLFLGFLLFVLDFFV*
Ga0137379_113942042	3300012209	Vadose Zone Soil	WVHDEISLFRRNFSRYTTIGPFYSVREESRFKAIPATFIRSFGRLTRSRINGGAILLLIGLLLFVLDFFI*
Ga0137377_109080032	3300012211	Vadose Zone Soil	FRRNFSRYTPAGPFYAIRGQSRFKAIPVSFVRSITRFPRRRVNGPAILLFLGLLLFVLDFFV*
Ga0137377_110888712	3300012211	Vadose Zone Soil	FSVWVQDEISVFRRNFSRYTPAGPFYAIREESRFKAILASFFHSLSHLPRSCINGGPILLLIGLLLFVLDFFV*
Ga0137370_109352021	3300012285	Vadose Zone Soil	EFSVWVQDEISVFRRNFSRYTPAGPFYAIHEESRFKAIPACFFHSLSHLPRSCINGGPILLLIGLLLFVLDFFV*
Ga0137366_101323093	3300012354	Vadose Zone Soil	FSRYTTIGPFYSVREESRFKAIPATFIRSLGRLTRSRINGGAILLLIGLLLFVLDFFI*
Ga0137384_101984671	3300012357	Vadose Zone Soil	QDELSVFRRNFSRYTAIGPFYGLREESRFKAIPTSFIRSVSRLPRSRFNVGPILLLIGFLLFILDFFV*
Ga0137384_109189262	3300012357	Vadose Zone Soil	VFRRNFSRYTPAGPFSSICEESRFKAIPACFFHSLSHLPRSCINGGPILLLIGLLLFVLDFFV*
Ga0137360_115614081	3300012361	Vadose Zone Soil	MAGGALMWRSRGDFFVWFQDELSFFRRNFSRYTPAGPFYAIRGESRFKAIPVSFLRSLTRFPRRRVNAPAILLFLGLLLFVLDFFF*
Ga0137360_118805862	3300012361	Vadose Zone Soil	RYTTIGPFYSVREESRFKAIPATFIRSFGRLTRSRINGGAILLLIGLLLFVLDFFI*
Ga0137395_105748781	3300012917	Vadose Zone Soil	ELSFFRRNFSRYTPAGPFYAIRGESRFKAIPVSFVRSITRFPRRRVNGPAILLFLGLLLFVLDFFV*
Ga0137413_102431681	3300012924	Vadose Zone Soil	DFFVWFQDELSFFRRNFSRYTPAGPFYAIRGESRFKAIPVSFVRSITRFPRRRINGPAILLFLGLLLFVLDFFV*
Ga0137419_117611442	3300012925	Vadose Zone Soil	EISVFRRNFSRYTPAGPFYAIREESRFKAILASFFHSLSHLPRSCINGGPVLLLIGLLLFILDFFV*
Ga0137416_112039691	3300012927	Vadose Zone Soil	FFRRNFSRYTPAGPFYAIREESRFKAIPVSFVRSITRFPRRRINGPAVLLFLGFLLFVLDFFV*
Ga0137404_106489272	3300012929	Vadose Zone Soil	AALMWRSRGDFSVWFHDELSFFRRNFSRYTPAGPFYALREESRLKAIPVSFVGSITRFPRRRVNRPAILLFLGFLLFLLDFLV*
Ga0134077_105220291	3300012972	Grasslands Soil	FFRRNFSRYTPAGPFYAIREESRFKAIPVSFVRSITHFPRNRINGPAILLFLGFLLFVLDFFV*
Ga0134079_103753012	3300014166	Grasslands Soil	RMWRNRADFSVWFHDELSFFRRNFSRYTPAGPFDALREESRFKAIPVSFVRSITRFPRSRINGPAVLLFLGFLLFVLDFFV*
Ga0137405_12425941	3300015053	Vadose Zone Soil	SRGDAALMWRSRGDFFVWFQDELSFFRRNFSRYTPAGPFYAIREDSRFKAIPVSFVHSITRFPRRRINGPAILLFMGLILFALDFFI*
Ga0137420_14188114	3300015054	Vadose Zone Soil	MRFPFSPKFLRYTPVGPFYAIREESRFKAIPTSFVRSLSRLPRSRINAGPILLFVGFLLFILDFFV*
Ga0137418_100039839	3300015241	Vadose Zone Soil	SVWVQDEISVFRRNFSRYTPAGPFYAIREESRFKAIPASFFHSLSRLPRSCINGGPILLLIGLLLFVLDFFV*
Ga0134073_100945082	3300015356	Grasslands Soil	FRRNFSRYTPAGPFYAIREESRFKAIPACFFHSLSHLPRSCINGGPILLLIGLLLFVLDFFV*
Ga0066655_102277612	3300018431	Grasslands Soil	MWRNRGEFSVWFHDELSFFRRNFSRYTPAGPFYALREESRFKAIPVSFVRSITHFSRSRINGPAVLLFLGLLLFVLDFFV
Ga0066667_105909032	3300018433	Grasslands Soil	FSVWFHDELSFFRRNFSRYTPAGPFYALREESRFKAIPVSFVRSITRFPRRRINGPAVLLFLGFLLFVLDFFV
Ga0193731_100007331	3300020001	Soil	VWRKRGEFSVWVQDEISVFRRNFSRYTPAGPFYAIREESRFKAILASFFHSLSHLPRSCINGGPILLLIGLLLFVLDFFV
Ga0179592_100037015	3300020199	Vadose Zone Soil	MWRSRGDFFVWFQDELSFFRRNFSRYTPAGPFYAIRGESRFKAIPLSFVRSITRFPRRRINGPAFLLFLGVLLFVLDFFV
Ga0179592_100388113	3300020199	Vadose Zone Soil	MWRSRGDFFVWFQDELSFFRRNFSRYTPAGPFYAIREDSRFKAIPVSFVHSITRFPRRRINGPAILLFMGLILFALDFFI
Ga0210407_100045168	3300020579	Soil	MWRSRGDFFVWFQDELSFFRRNFSRYTPAGPFYALREESRFKAIPVSFLRSITRFPRRRINGPALLLFLGFLLFVLDFFV
Ga0210407_100220884	3300020579	Soil	MWRSRGDFFVWFQDELSFFRRNFSRYTPAGPFYALREESRFKAIPVSFVRSITRFPRRRINGPALLLFLGFLLFVLDFFI
Ga0210399_116051452	3300020581	Soil	RYTPAGPFYALREESRFKAIPVSFVRSITRFPRRRINGPALLLFLGFLLFVLDFFI
Ga0210405_112753912	3300021171	Soil	IGPFYSPREDSRFKAIPTSVIRSVRRLPRSPINGGPILLFLGLLLVFLDFFI
Ga0210386_111585781	3300021406	Soil	FSRYTPAGPFYAIREESRFKAIPASFFHSLSRLPRSSINGGPILLLIGLLLFVLDFFV
Ga0210384_114414853	3300021432	Soil	TFYAIREESRFKAIPVSFVHSITRFPRRRINGPAILLMLGLLLFALDFFI
Ga0210402_100658623	3300021478	Soil	MWRSRGDFFVWFQDELSFFRRNFSRYTPAGPFYAIREDSRFKAIPVSFVHSITRFPRRRINGPAILLILGFLLFVLDFFV
Ga0210402_102311032	3300021478	Soil	MWRSRGDFFVWFQDELSFFRRNFSRYTPAGPFYAIREDSRFKAIPVSFVHSITRFPRRRINGPAVLLILGLVLFALDFFI
Ga0210402_117961612	3300021478	Soil	LSIFRRNFSRYTPVGPFYAIREDSRFKAIPTSFIRSVTFFPRSRFNRGPILLLIGLLLFALDFFI
Ga0210410_107922531	3300021479	Soil	TPAGPFYALREESRFKAIPVSFLRSITRFPRRRINGPALLLFLGFLLFVLDFFV
Ga0210409_103948642	3300021559	Soil	MWRSRGDFFVWFQDELSFFRRNFSRYTPAGPFYAIREESRFKAIPVSFVHSITRFPRRRINGPAILLMLGLLLFALDFFI
Ga0210409_109217652	3300021559	Soil	RNFSRYTPAGPFYCIREESRFKAIPTSFVRSLSRLPRSRINAGPILLFLGFLLFILDFFV
Ga0137417_13504162	3300024330	Vadose Zone Soil	MWRSRGDFFVWFQDELSFFRRSFSRYTPAGPFYAIRGESRFKAIPVSFLRSITRFPRRRVNRPAILLFLGLLLFVLDFFV
Ga0209350_10079726	3300026277	Grasslands Soil	AGPFYAIREESRFKAIPACFFHSLSHLPRSCINGGPILLLIGLLLFVLDFFV
Ga0209350_11141642	3300026277	Grasslands Soil	RRNFSRYTPAGPFYAIREESRFKAILASFFHSLSHLPRSCINGGPILLLIGLLLFVLDFF
Ga0209240_11036832	3300026304	Grasslands Soil	LSFFRRNFSRYTPAGPFYAIREDSRFKAIPVSFVHSITRFPRRRINGPAILLFMGLILFALDFFI
Ga0209470_11957361	3300026324	Soil	TTIGPFYSVREESRFKAIPATFIRSLGRLTRSRINGGAILLLIGLLLFVLDFFI
Ga0209802_10785442	3300026328	Soil	MWRCRGEFFVWFQDELCFFRRNFSRYTPAGPFYAIREESRFKAIPVSFVRSITHFPRNRINGPAILLFLGFLLFVLDFFV
Ga0209375_12558262	3300026329	Soil	PAGPFYALREESRFKAIPVSFVRSITRFPRSRINGPAVLLFLGFLLFVLDFFV
Ga0209375_12815241	3300026329	Soil	VWRNRGEFSVWVQDEISVFRRNFSRYTPVGPFYSIREESRFKAIPACFFHSLSHLPRSCINGGPILLLIGLLLFVLDFFV
Ga0209377_11821021	3300026334	Soil	VHDEISLFRRNFSRYTTIGPFYSVREESRFKAIPATFIRSLGRLTRSRINGGAILLLIGLLLFVLDFFI
Ga0209159_10931841	3300026343	Soil	LVWRNRGEFSVWVQDEISVFRRNFSRYTPVGPFYSIREESRFKAIPASFFHSLSRLPRSSINGGPVLLLIGLLLFVLDFFV
Ga0257176_10185161	3300026361	Soil	AALVWRKRGELSVWVQDEISVFRRNFSRYTPAGPFYAIREESRFKAIPASFFHSLSRLPRSCINGGPILLLIGLLLFVLDFFV
Ga0257164_10838311	3300026497	Soil	RSDFSIWFHDELSFFRRNFSRYTPAGPFYAIREESRFKAIPVSFVRSITRFPRRHINGPAALLLIGLLLFALDFFV
Ga0257181_10412292	3300026499	Soil	MWRSRSDFSIWFHDELSFFRRNFSRYTPAGPFYAIREESRFKAIPVSFVRSITRFPRRHINGPAALLLIGLLLFALDFFV
Ga0257158_10828651	3300026515	Soil	RRNFSRYTPAGPFYAIREESRFKAIPVSFVRSITHFPRRRINGPAILLFMGLILLALDFF
Ga0209808_12649641	3300026523	Soil	ELSFFRRNFSRYTPAGPFYAIREESRFRAIPVSFVRSIARFPRSRINGPAILLFLGFLLFVLDFFV
Ga0209806_12092402	3300026529	Soil	RYTPAGPFYAIREESRFRAIPVSFVRSIARFPRSRINGPAILLFLGFLLFVLDFFV
Ga0209805_12427341	3300026542	Soil	AGPFYAIREESRFRAIPVSFVRSIARFPRSRINGPAILLFLGFLLFVLDFFV
Ga0209474_100991343	3300026550	Soil	VFRRNFSRYTPVGPFYSIREESRFKAIPASFFHSLSRLPRSSINGGPILLLIGLLLFVLDFFV
Ga0179593_10424126	3300026555	Vadose Zone Soil	VWRKRGELSIWVQDEISVFRRNFSRYTPAGPFYAIREESRFKAIPASFFHSLSRLPRSCINGGPYFFLSACS
Ga0179587_103416452	3300026557	Vadose Zone Soil	FRRNFSRYTPVGSFYAIREESRLKAIPVTFVRSISHFPRRRINTPALLLFLGFLLFILDFFV
Ga0209329_10629452	3300027605	Forest Soil	GEFSVWVQDEISVFRRNFSRYTPAGPFYCIREESRFKAIPASFFHSLSRLPRSSINGGPILLLIGLLLFVLDFFV
Ga0209106_11016402	3300027616	Forest Soil	GGALMWRHRDDFSVWFQDELSFFRRNFSRYTPAGPFYAIREESRFKAIPVSFVRSITRFPRSRINGPAILLFLGFVLFLLDFFV
Ga0209076_10535531	3300027643	Vadose Zone Soil	LVWRKRGELSVWVQDEISVFRRNFSRYTPAGPFYAIREESRFKAIPASFFHSLSRLPRSCINGGPILLLIGLLLFVLDFFV
Ga0209076_10659761	3300027643	Vadose Zone Soil	VFRRNFSRYTPAGPFYAIREESRFKAILASFFHSLSHLPRSCINGGPILLLIGLLLFVLDFFV
Ga0209180_100985862	3300027846	Vadose Zone Soil	YTTIGPFYSVREESRFKAIPATFIRSLGRLTRSRINGGAILLLIGLLLFVLDFFI
Ga0209180_101627753	3300027846	Vadose Zone Soil	MAGAALMWRSRGEFFVWFQDELSFFRRNFSRYTPAGPFYAIREESRLKAIPVSFLRSITRFPRSRVNGAAVLLFLG
Ga0209180_105157511	3300027846	Vadose Zone Soil	RNFSRYTPAGPFYAIREESRFKAILASFFHSLSHLPRSCINGGPILLLIGLLLFVLDFFV
Ga0209701_100299261	3300027862	Vadose Zone Soil	GALMWRSRGDFFVWFQDELSFFRRNFSRYTPAGPFYAIRGQSRFKAIPVSFVRSITRFPRRRVNGPAILLFLGLLLFVLDFFV
Ga0209701_100780963	3300027862	Vadose Zone Soil	MWRSRGDFFVWFQDELSFFRRNFSRYTPAGPFYAVRGESRFKAIPVSFVGSITRFPRRRVNGPAILLFLGLLLFVLDFFV
Ga0209283_101688263	3300027875	Vadose Zone Soil	MWRSRGDFFVWFQDELSFFRRNFSRYTPAGPFYAISGESRFKAIPVSFVRSIARFPRRGINGPAILLFLGFLLFVLDFFI
Ga0209526_109789671	3300028047	Forest Soil	DEISVFRRNFSRYTPAGPFYAIREESRFKAIPVSFVHSLSRLPRSCINGGAILLLFGLLLFVLDFFV
Ga0307482_10129002	3300030730	Hardwood Forest Soil	MWRSRGDFSLWFHDELSFFRRNFSRYIPAGPFYAIRGESRFKAIPVTFFHSITRFPRRRINGPAILLILGILLFALDFFV
Ga0170834_1068808982	3300031057	Forest Soil	FFFSFFRRNFSRYTPAGPFYAIRGESRFKAIPVSFVRSIMRFPRRRINGPAILLFLGFLLLVLDFFV
Ga0307477_103315311	3300031753	Hardwood Forest Soil	YTPAGPFYTIREESRFKAIPASFVRSITRFPRSRINGPVILLLLGFLLFILDFFV
Ga0307475_110455292	3300031754	Hardwood Forest Soil	GPFYAIREESRFKAIPASFFHSLSRLPRSSINGGPILLLIGLLLFVLDFFV
Ga0307473_101381882	3300031820	Hardwood Forest Soil	MWRSRGDFFVWFQDELSFFRRNFSRYTPAGPFYAIREESRLKAIPVTFIRSITHFPRRRINGPAILLLLGFLLFVLDFFV
Ga0307478_101698432	3300031823	Hardwood Forest Soil	MWRSRGDFFVWFQDELSFFRRNFSRYTPAGPFYAIREESRLKAIPVSFVGSITRFPRRRINGPAILLFLGFLFFVLDFFI
Ga0307479_103369042	3300031962	Hardwood Forest Soil	MWRSRSDFSIWFHDELSFFRRNFSRYTPAGPFYAIREKSRFKAIPVSFVRSITRFPRRRINGPAALLLIGLLLFVLDFFV
Ga0307479_106444601	3300031962	Hardwood Forest Soil	MWRSRGDFFVWFQDELSFFRRNFSRYTPAGPFYAIREESRFKAIPVSFVRSITRFPRRRINGPATLLILGFLLFVLDFFI
Ga0307471_1003360752	3300032180	Hardwood Forest Soil	MWRTRGDFFIWFHDELSLFRRNFSRYTPVGPFYAIREESRFKAIPTSFIRSVTFFPRSRFNRGPLLLLIGLLLFALDFFV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F061704

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences