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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F061651 |
| Family Type | Metagenome |
| Number of Sequences | 131 |
| Average Sequence Length | 43 residues |
| Representative Sequence | IALYLAGTTDLKTLALAGVAAVAGPVLKALDPSATEFGRGSN |
| Number of Associated Samples | 98 |
| Number of Associated Scaffolds | 131 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | No |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 0.00 % |
| % of genes near scaffold ends (potentially truncated) | 13.74 % |
| % of genes from short scaffolds (< 2000 bps) | 8.40 % |
| Associated GOLD sequencing projects | 88 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.43 |
| Hidden Markov Model |
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| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (87.786 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake (25.191 % of family members) |
| Environment Ontology (ENVO) | Unclassified (69.466 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) (70.992 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | Yes | Secondary Structure distribution: | α-helix: 34.29% β-sheet: 0.00% Coil/Unstructured: 65.71% | Feature Viewer |
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| Powered by Feature Viewer | |||||
| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.43 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 131 Family Scaffolds |
|---|---|---|
| PF12705 | PDDEXK_1 | 14.50 |
| PF02467 | Whib | 13.74 |
| PF13392 | HNH_3 | 6.11 |
| PF00227 | Proteasome | 4.58 |
| PF01930 | Cas_Cas4 | 2.29 |
| PF13481 | AAA_25 | 1.53 |
| PF13578 | Methyltransf_24 | 1.53 |
| PF01844 | HNH | 1.53 |
| PF07659 | DUF1599 | 0.76 |
| PF01807 | zf-CHC2 | 0.76 |
| PF03796 | DnaB_C | 0.76 |
| PF05257 | CHAP | 0.76 |
| PF13155 | Toprim_2 | 0.76 |
| PF12728 | HTH_17 | 0.76 |
| COG ID | Name | Functional Category | % Frequency in 131 Family Scaffolds |
|---|---|---|---|
| COG0638 | 20S proteasome, alpha and beta subunits | Posttranslational modification, protein turnover, chaperones [O] | 4.58 |
| COG3484 | Predicted proteasome-type protease | Posttranslational modification, protein turnover, chaperones [O] | 4.58 |
| COG5405 | ATP-dependent protease HslVU (ClpYQ), peptidase subunit | Posttranslational modification, protein turnover, chaperones [O] | 4.58 |
| COG1468 | CRISPR/Cas system-associated exonuclease Cas4, RecB family | Defense mechanisms [V] | 2.29 |
| COG0305 | Replicative DNA helicase | Replication, recombination and repair [L] | 0.76 |
| COG0358 | DNA primase (bacterial type) | Replication, recombination and repair [L] | 0.76 |
| COG1066 | DNA repair protein RadA/Sms, contains AAA+ ATPase domain | Replication, recombination and repair [L] | 0.76 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 87.79 % |
| All Organisms | root | All Organisms | 12.21 % |
| Visualization |
|---|
| Powered by ApexCharts |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| 3300000756|JGI12421J11937_10009774 | All Organisms → Viruses → Predicted Viral | 3713 | Open in IMG/M |
| 3300003394|JGI25907J50239_1020146 | All Organisms → Viruses → Predicted Viral | 1489 | Open in IMG/M |
| 3300008110|Ga0114343_1013946 | All Organisms → Viruses → Predicted Viral | 3767 | Open in IMG/M |
| 3300009068|Ga0114973_10060372 | All Organisms → Viruses → Predicted Viral | 2214 | Open in IMG/M |
| 3300009068|Ga0114973_10078111 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1905 | Open in IMG/M |
| 3300009154|Ga0114963_10008210 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 7095 | Open in IMG/M |
| 3300009181|Ga0114969_10292575 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 964 | Open in IMG/M |
| 3300009684|Ga0114958_10132408 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1271 | Open in IMG/M |
| 3300017722|Ga0181347_1014588 | All Organisms → Viruses → Predicted Viral | 2524 | Open in IMG/M |
| 3300017761|Ga0181356_1039424 | All Organisms → Viruses → Predicted Viral | 1665 | Open in IMG/M |
| 3300017766|Ga0181343_1196603 | Not Available | 553 | Open in IMG/M |
| 3300017778|Ga0181349_1192898 | Not Available | 708 | Open in IMG/M |
| 3300020151|Ga0211736_10402367 | Not Available | 724 | Open in IMG/M |
| 3300022190|Ga0181354_1035466 | All Organisms → Viruses → Predicted Viral | 1643 | Open in IMG/M |
| 3300027608|Ga0208974_1020127 | All Organisms → Viruses → Predicted Viral | 2081 | Open in IMG/M |
| 3300027796|Ga0209373_10041726 | All Organisms → Viruses → Predicted Viral | 2376 | Open in IMG/M |
| 3300031885|Ga0315285_10789236 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 597 | Open in IMG/M |
| 3300032342|Ga0315286_10087436 | All Organisms → Viruses → Predicted Viral | 3332 | Open in IMG/M |
| 3300033979|Ga0334978_0246816 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C440 | 865 | Open in IMG/M |
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| Habitat | Taxonomy | Distribution |
| Freshwater Lake | Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake | 25.19% |
| Freshwater Lake | Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake | 19.08% |
| Freshwater | Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater | 12.98% |
| Sediment | Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment | 9.92% |
| Freshwater | Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater | 8.40% |
| Freshwater, Plankton | Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton | 6.11% |
| Freshwater | Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater | 3.82% |
| Freshwater Lentic | Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic | 3.05% |
| Freshwater Lake | Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake | 3.05% |
| Freshwater | Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater | 1.53% |
| Aqueous | Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous | 1.53% |
| Freshwater Sediment | Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment | 0.76% |
| Freshwater And Sediment | Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment | 0.76% |
| Freshwater Lake Sediment | Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment | 0.76% |
| Freshwater | Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater | 0.76% |
| Freshwater | Environmental → Aquatic → Freshwater → Pond → Sediment → Freshwater | 0.76% |
| Freshwater | Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater | 0.76% |
| Deep Subsurface Sediment | Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment | 0.76% |
| Visualization |
|---|
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| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300000756 | Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 | Environmental | Open in IMG/M |
| 3300003394 | Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SN | Environmental | Open in IMG/M |
| 3300003491 | Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SD | Environmental | Open in IMG/M |
| 3300004054 | Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (v2) | Environmental | Open in IMG/M |
| 3300005582 | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF | Environmental | Open in IMG/M |
| 3300006805 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA | Environmental | Open in IMG/M |
| 3300008110 | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-3-NA | Environmental | Open in IMG/M |
| 3300008113 | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA | Environmental | Open in IMG/M |
| 3300008117 | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-C-NA | Environmental | Open in IMG/M |
| 3300008120 | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-3-NA | Environmental | Open in IMG/M |
| 3300008264 | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-53-LTR | Environmental | Open in IMG/M |
| 3300008266 | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA | Environmental | Open in IMG/M |
| 3300008448 | Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs | Environmental | Open in IMG/M |
| 3300008450 | Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs | Environmental | Open in IMG/M |
| 3300009068 | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG | Environmental | Open in IMG/M |
| 3300009082 | Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm May2015 | Environmental | Open in IMG/M |
| 3300009152 | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG | Environmental | Open in IMG/M |
| 3300009154 | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG | Environmental | Open in IMG/M |
| 3300009155 | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG | Environmental | Open in IMG/M |
| 3300009158 | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG | Environmental | Open in IMG/M |
| 3300009159 | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG | Environmental | Open in IMG/M |
| 3300009160 | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_MF_MetaG | Environmental | Open in IMG/M |
| 3300009180 | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG | Environmental | Open in IMG/M |
| 3300009181 | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG | Environmental | Open in IMG/M |
| 3300009183 | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG | Environmental | Open in IMG/M |
| 3300009184 | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG | Environmental | Open in IMG/M |
| 3300009684 | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130208_EF_MetaG | Environmental | Open in IMG/M |
| 3300010157 | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_MF_MetaG | Environmental | Open in IMG/M |
| 3300010233 | Filterable freshwater microbial communities from Conwy River, North Wales, UK. Fraction, filtered through 0.2 um filter. After WGA. | Environmental | Open in IMG/M |
| 3300010885 | northern Canada Lakes Co-assembly | Environmental | Open in IMG/M |
| 3300012000 | Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A | Environmental | Open in IMG/M |
| 3300012006 | Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1101B | Environmental | Open in IMG/M |
| 3300012012 | Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 879 - Top - Depth 1m | Environmental | Open in IMG/M |
| 3300013004 | Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG | Environmental | Open in IMG/M |
| 3300013005 | Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES117 metaG | Environmental | Open in IMG/M |
| 3300013372 | Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPs | Environmental | Open in IMG/M |
| 3300017722 | Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.N | Environmental | Open in IMG/M |
| 3300017723 | Freshwater viral communities from Lake Michigan, USA - Su13.ND.MM110.S.N | Environmental | Open in IMG/M |
| 3300017736 | Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.D.N | Environmental | Open in IMG/M |
| 3300017761 | Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.N | Environmental | Open in IMG/M |
| 3300017766 | Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.S.D | Environmental | Open in IMG/M |
| 3300017777 | Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.D.N | Environmental | Open in IMG/M |
| 3300017778 | Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.D | Environmental | Open in IMG/M |
| 3300017785 | Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.N | Environmental | Open in IMG/M |
| 3300020151 | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1 | Environmental | Open in IMG/M |
| 3300020159 | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1 | Environmental | Open in IMG/M |
| 3300020172 | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1 | Environmental | Open in IMG/M |
| 3300021438 | Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17 MG | Environmental | Open in IMG/M |
| 3300022190 | Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.N | Environmental | Open in IMG/M |
| 3300022407 | Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D | Environmental | Open in IMG/M |
| 3300024495 | Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepA_8d | Environmental | Open in IMG/M |
| 3300024496 | Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Yuk_RepB_8h | Environmental | Open in IMG/M |
| 3300027608 | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes) | Environmental | Open in IMG/M |
| 3300027659 | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes) | Environmental | Open in IMG/M |
| 3300027707 | Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DCMD (SPAdes) | Environmental | Open in IMG/M |
| 3300027732 | Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DD (SPAdes) | Environmental | Open in IMG/M |
| 3300027734 | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes) | Environmental | Open in IMG/M |
| 3300027741 | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes) | Environmental | Open in IMG/M |
| 3300027749 | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes) | Environmental | Open in IMG/M |
| 3300027756 | Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.DN (SPAdes) | Environmental | Open in IMG/M |
| 3300027763 | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes) | Environmental | Open in IMG/M |
| 3300027777 | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_140205_EF_MetaG (SPAdes) | Environmental | Open in IMG/M |
| 3300027785 | Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SN (SPAdes) | Environmental | Open in IMG/M |
| 3300027796 | Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - High cellulose week 5 (SPAdes) | Environmental | Open in IMG/M |
| 3300027798 | Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD (SPAdes) | Environmental | Open in IMG/M |
| 3300027899 | Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL (SPAdes) | Environmental | Open in IMG/M |
| 3300027963 | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes) | Environmental | Open in IMG/M |
| 3300027971 | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes) | Environmental | Open in IMG/M |
| 3300027974 | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_MF_MetaG (SPAdes) | Environmental | Open in IMG/M |
| 3300028025 | Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC | Environmental | Open in IMG/M |
| 3300028392 | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_MF_MetaG (v2) | Environmental | Open in IMG/M |
| 3300028393 | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_MF_MetaG (v2) | Environmental | Open in IMG/M |
| 3300031746 | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_20 | Environmental | Open in IMG/M |
| 3300031772 | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_20 | Environmental | Open in IMG/M |
| 3300031784 | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112 | Environmental | Open in IMG/M |
| 3300031857 | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125 | Environmental | Open in IMG/M |
| 3300031885 | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_36 | Environmental | Open in IMG/M |
| 3300031952 | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_40 | Environmental | Open in IMG/M |
| 3300031963 | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116 | Environmental | Open in IMG/M |
| 3300031999 | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20 | Environmental | Open in IMG/M |
| 3300032046 | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_40 | Environmental | Open in IMG/M |
| 3300032053 | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16 | Environmental | Open in IMG/M |
| 3300032116 | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA119 | Environmental | Open in IMG/M |
| 3300032164 | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_0 | Environmental | Open in IMG/M |
| 3300032342 | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G10_0 | Environmental | Open in IMG/M |
| 3300033979 | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME30Aug2017-rr0003 | Environmental | Open in IMG/M |
| 3300033992 | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035 | Environmental | Open in IMG/M |
| 3300033996 | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004 | Environmental | Open in IMG/M |
| 3300034012 | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027 | Environmental | Open in IMG/M |
| 3300034062 | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045 | Environmental | Open in IMG/M |
| 3300034071 | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110 | Environmental | Open in IMG/M |
| 3300034095 | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Feb2014D0-rr0091 | Environmental | Open in IMG/M |
| 3300034103 | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119 | Environmental | Open in IMG/M |
| 3300034104 | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120 | Environmental | Open in IMG/M |
| 3300034106 | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131 | Environmental | Open in IMG/M |
| 3300034167 | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Apr2015-rr0082 | Environmental | Open in IMG/M |
| 3300034200 | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2013-rr0190 | Environmental | Open in IMG/M |
| 3300034279 | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2014-rr0163 | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
| ⦗Top⦘ |
| Protein ID | Sample Taxon ID | Habitat | Sequence |
| JGI12421J11937_100097741 | 3300000756 | Freshwater And Sediment | ASVIALYLAGVTEPKALFAAGLAAIAGPVLKALDPKAADFGKTK* |
| JGI25907J50239_10201461 | 3300003394 | Freshwater Lake | YLAGTTDLKTLALAGVAAVAGPVLKALDPSATEFGVNSK* |
| JGI25907J50239_10311451 | 3300003394 | Freshwater Lake | YLAGNTDVKALATAAVAAVAGPLLKALDSSATEFGRGSN* |
| JGI25924J51412_10384133 | 3300003491 | Freshwater Lake | LHLRAAIASVIALYLAGTTDLKTLALAGVAAVAGPVLKALDPSATEFGRGSN* |
| Ga0063232_101284531 | 3300004054 | Freshwater Lake | AAVASVIALYLAGTTDLKTLALAGVAAVAGPVLKALDPSATEFGVNSK* |
| Ga0049080_100791814 | 3300005582 | Freshwater Lentic | RAAVASVIALYLAGTTDLKTLALAGVAAVAGPVLKALDPSATEFGVNSK* |
| Ga0075464_104395011 | 3300006805 | Aqueous | LRAGIASVIALWLAGVTDPKALATAGIAAIAGPVLKALDPKLAEFGRGSK* |
| Ga0075464_106854191 | 3300006805 | Aqueous | LRAGIASVIALWLAGVTDPKALATAGIAAIAGPVLKALDPKAVEFGRKAK* |
| Ga0114343_10139461 | 3300008110 | Freshwater, Plankton | VLALYLAGTTDLKTLALAGVAAVAGPVLKALDPSATEFGINAK* |
| Ga0114346_10517386 | 3300008113 | Freshwater, Plankton | LAGVTDPKALATAGLAAIAGPLLKALDPKATEFGRGAK* |
| Ga0114346_12926531 | 3300008113 | Freshwater, Plankton | SVIALYLAGVTDPKALATAGIAAIAGPLLKALDPKATAFGRGSK* |
| Ga0114351_10984321 | 3300008117 | Freshwater, Plankton | TDPKALATAGIAAIAGPLLKALDPKATEFGRGSK* |
| Ga0114355_10788811 | 3300008120 | Freshwater, Plankton | AAAAIALYMAGETDPKTLCWAFVAAIAGPALKALDKTAKEFGRGSK* |
| Ga0114355_11743022 | 3300008120 | Freshwater, Plankton | TDIKTIGLAALAAIAGPVLKALDPNASEFGRGSK* |
| Ga0114353_13232342 | 3300008264 | Freshwater, Plankton | RAGIASVIALWLAGVTDPKALATAGIAAIAGPVLKALDPKLAEFGRGSK* |
| Ga0114363_11645405 | 3300008266 | Freshwater, Plankton | AGVASVIALYLAGVTDPKALATAGIAAIAGPLLKALDPKAAEFGRGSK* |
| Ga0114876_12607311 | 3300008448 | Freshwater Lake | AGVTDPKALATAGIAAIAGPLLKALDPKATEFGRGSK* |
| Ga0114880_11819211 | 3300008450 | Freshwater Lake | ETSPKALASAFVAAIAGPVLKALDTNSPEFGRGSK* |
| Ga0114880_11828771 | 3300008450 | Freshwater Lake | LAGVTDPKALATAGIAAIAGPLLKAIDPKNTEFGRGAK* |
| Ga0114880_12726661 | 3300008450 | Freshwater Lake | AAVLALYLTGQTDVKALAMAGVAAIAGPLLKALDKAEEQYGLTK* |
| Ga0114973_100603727 | 3300009068 | Freshwater Lake | LAGNTDIKTLAMAGVAAVAGPVLKALDSSATEFGRGSK* |
| Ga0114973_100781111 | 3300009068 | Freshwater Lake | LYLAGVTDPKALASAAVAAVAGPLLKAIDPNATEFGRGSK* |
| Ga0105099_100808915 | 3300009082 | Freshwater Sediment | VTALYLAGETSPQALLSAAVAAVAGPVLKALDPKATEFGKGSK* |
| Ga0114980_101848191 | 3300009152 | Freshwater Lake | LRAGIASVIALWLAGVTDPKALATAGIAAIAGPVLKALDPKSADFGRGSK* |
| Ga0114963_1000821016 | 3300009154 | Freshwater Lake | TDLKTLALAGVAAVAGPVLKALDPASPEFGVGSK* |
| Ga0114968_102661533 | 3300009155 | Freshwater Lake | RAAVAAVLALYLSGVTDLKTLALAGVAAVAGPVLKALDPSSTEFGVGSK* |
| Ga0114968_105469162 | 3300009155 | Freshwater Lake | YARAGFAAVLALYLAGNTDIKTLATAGVAAVAGPLLKALDPSATEFGRGSN* |
| Ga0114977_105228601 | 3300009158 | Freshwater Lake | LRAGIASVIALWLAGVTDPKALATAGIAAIAGPVLKALDPKAAEFGRKAK* |
| Ga0114978_103102833 | 3300009159 | Freshwater Lake | AGNTDIKALATAGVAAVAGPLLKALDSSATEFGRGSN* |
| Ga0114978_107136091 | 3300009159 | Freshwater Lake | AALALYLAGNTDLKALATAAVAAVAGPILKAIDPSATEFGIGSK* |
| Ga0114981_107628442 | 3300009160 | Freshwater Lake | LYLAGNTDLKALAMAAVAAVAGPILKAIDPSATEFGIGSK* |
| Ga0114979_101340962 | 3300009180 | Freshwater Lake | LWLAGVTDPKALATAGIAAIAGPLLKVMDPKATEFGRGAK* |
| Ga0114969_102925755 | 3300009181 | Freshwater Lake | VASVIALYLAGVTDPKALFAAAVAAVAGPLLKALDPKAVDFGKKAK* |
| Ga0114974_102932621 | 3300009183 | Freshwater Lake | VASVIALYLAGTTDLKTLALAGIAAVAGPVLKALDPSATEFGVNSK* |
| Ga0114974_106513481 | 3300009183 | Freshwater Lake | GIASVIALWLAGVTDPKALATAGIAAIAGPVLKALDPKSADFGRGSK* |
| Ga0114974_106864831 | 3300009183 | Freshwater Lake | ALYLSGVTDLKTLALAGVAAVAGPVLKALDPSSPEFGVGSK* |
| Ga0114974_108065121 | 3300009183 | Freshwater Lake | WLAGVTDPKALTTAGIAAIAGPVLKALDPKSAEFGRGSK* |
| Ga0114976_103509311 | 3300009184 | Freshwater Lake | NTDLKALATAAVAAVAGPILKAIDPSATEFGIGSK* |
| Ga0114958_101324081 | 3300009684 | Freshwater Lake | ISYARAAFAAVLALYLAGNTDLKALATAGVAAVAGPLLKALDPSATEFGRGSN* |
| Ga0114958_101396971 | 3300009684 | Freshwater Lake | AFAAVLALYLAGNTDLKALATAGVAAVAGPLLKALDSSATEFGRGSN* |
| Ga0114964_101405593 | 3300010157 | Freshwater Lake | ALYLSGVSDLKTLALAGVAAIAGPVLKALDPASPEFGVGSK* |
| Ga0136235_10200343 | 3300010233 | Freshwater | NTDLKALATAAVAAVAGPLLKAIDPSATEFGIGSK* |
| Ga0133913_102317559 | 3300010885 | Freshwater Lake | LAGETDPKKLLMALAAAVAGPLLKALNPKETEYGVGFKKA* |
| Ga0119951_10717042 | 3300012000 | Freshwater | VIALYLAGVTDPKALASAGIAAIAGPVLKALDPNSAEFGRGSK* |
| Ga0119955_11732491 | 3300012006 | Freshwater | VTDPKALATAGIAAIAGPLLKALDPKAVEFGRGSK* |
| Ga0153799_10211664 | 3300012012 | Freshwater | YLAGETSPKALLSAAVAAVAGPVLKALDPKATEFGKGSK* |
| Ga0164293_103977121 | 3300013004 | Freshwater | YLAGVTDPKALLMAGVAAVAGPLLKAIDPSATEFGRGSK* |
| Ga0164293_104557102 | 3300013004 | Freshwater | LRAGVASVLALYLAGVTDPKALLMAGVAAVAGPLLKAIDPSATEFGRGSK* |
| Ga0164292_107530481 | 3300013005 | Freshwater | VLALYLAGVTDPKALLMAGVAAVAGPLLKAIDPSATEFGRGSK* |
| Ga0177922_100352623 | 3300013372 | Freshwater | AVLALYLAGNTDVKALATAAVAAVAGPLLKALDSSATEFGRGSN* |
| Ga0177922_101866281 | 3300013372 | Freshwater | TTDLKTLALAGVAAVAGPVLKALDPSATEFGVNSK* |
| Ga0177922_108253661 | 3300013372 | Freshwater | ASVIALYLAGTTDLKTLALAGVAAVAGPVLKALDPSATEFGRGSN* |
| Ga0177922_112801121 | 3300013372 | Freshwater | LALWLAGVNDPKALAMAGVSAVAGPVLKWLDPKSTEFGRGSK* |
| Ga0181347_10145886 | 3300017722 | Freshwater Lake | RAAVASVIALYLAGTTDLKTLALAGVAAVAGPVLKALDPSATEFGRGSN |
| Ga0181347_10718681 | 3300017722 | Freshwater Lake | NTDVKALATAAVAAVAGPLLKALDSSATEFGRGSN |
| Ga0181362_10965531 | 3300017723 | Freshwater Lake | WLAGVTDPKALATAGIAAIAGPLLKAIDPKATEFGRGSK |
| Ga0181365_11333411 | 3300017736 | Freshwater Lake | IALYLAGVTDPKALATAGIAAIAGPLLKALDPKATEFGRGAK |
| Ga0181356_10394241 | 3300017761 | Freshwater Lake | AAVASVIALYLAGTTDLKTLALAGVAAVAGPVLKALDPSATEFGVNSK |
| Ga0181356_10562091 | 3300017761 | Freshwater Lake | SVIALYLAGTTDLKTLALAGVAAVAGPVLKALDPSATEFGRGSN |
| Ga0181343_11966031 | 3300017766 | Freshwater Lake | RAGVASVIALYLAGVTDPKALASAGIAAIAGPLLKALDPKNTEFGRGSK |
| Ga0181357_12710131 | 3300017777 | Freshwater Lake | ASVIALYLAGVTDPKALASAALAAVAGPLLKAIDPKATEFGRGSK |
| Ga0181349_11928982 | 3300017778 | Freshwater Lake | AAVIALYLAGETDPKKLSMAAIAAVAGPVLKWLDPKATEFGRGSK |
| Ga0181355_11452923 | 3300017785 | Freshwater Lake | LAGETDPKALASAFVAAIAGPVLKALDTNSPEFGRGSK |
| Ga0181355_13027491 | 3300017785 | Freshwater Lake | RGLRAAVASVIALYLAGVTDPKALLSAALAAVAGPLLKALDPKATEFGKGSKK |
| Ga0211736_104023673 | 3300020151 | Freshwater | TYIRAAIASVLALYLAGTTDLKTLALAGVAAVAGPVLKALDPSATEFGRNSN |
| Ga0211734_102793793 | 3300020159 | Freshwater | RAAVASVLALYLAGTTDLKTLALAGVAAVAGPVLKALDPSATEFGVNAK |
| Ga0211729_104227771 | 3300020172 | Freshwater | LAGVTDPKALAMAGIAAVAGPLLKALDPKAAEFGRGSK |
| Ga0211729_107889241 | 3300020172 | Freshwater | LYLAGTTDLKTLALAGVAAVAGPVLKALDPSATEFGRNSN |
| Ga0213920_10846072 | 3300021438 | Freshwater | ALYLAGETDPKKLAMAAVAAVAGPVLKALDPKASEFGRGSK |
| Ga0181354_10354664 | 3300022190 | Freshwater Lake | IALYLAGTTDLKTLALAGVAAVAGPVLKALDPSATEFGVNSK |
| Ga0181354_10936871 | 3300022190 | Freshwater Lake | VRAAVAAVLALYLAGTTDLKTLGLAALTGVAGPLLKALDSSDTNFGRGAE |
| Ga0181354_11410521 | 3300022190 | Freshwater Lake | AGIAAVIALWLAGVTDPKALATAGIAAIAGPLLKAIDPKATEFGRGSK |
| Ga0181351_11362501 | 3300022407 | Freshwater Lake | VASVIALYLAGTTDLKTLALAGVAAVAGPVLKALDPSATEFGRGSN |
| Ga0255164_10661292 | 3300024495 | Freshwater | YLAGETDPKKLGYAALAAIAGPLLKWLDPKSKEFGRGSK |
| Ga0255151_10268971 | 3300024496 | Freshwater | VALYLAGETDPKKLGTAALAGFLGPVLKWLDPKATEFGRGSK |
| Ga0208974_10201277 | 3300027608 | Freshwater Lentic | TYIRAAVASVIALYLAGTTDLKTLALAGVAAVAGPVLKALDPSAPEFGRTNN |
| Ga0208975_10784481 | 3300027659 | Freshwater Lentic | ETNPKALGSAFLAAIAGPVLKALDSNSPEFGRGSK |
| Ga0208975_11203133 | 3300027659 | Freshwater Lentic | AAVAAVIALYMAGETNPKNLATAALAAVAGPVLKALDPKSTEFGRGSK |
| Ga0209443_12175012 | 3300027707 | Freshwater Lake | ASVIALYLAGTTDLKTLALAGVAAVAGPVLKALDPSATEFGRGSN |
| Ga0209442_11963293 | 3300027732 | Freshwater Lake | IALYLAGTTDLKTLALAGVAAVAGPVLKALDPSATEFGRGSN |
| Ga0209087_12736981 | 3300027734 | Freshwater Lake | RAGIASVIALWLAGVTDPKALATAGIAAIAGPVLKALDPKLAEFGRGSK |
| Ga0209085_13004131 | 3300027741 | Freshwater Lake | ETSPKALVSAAVAAVAGPVLKALDPKATEFGKGSK |
| Ga0209084_13735571 | 3300027749 | Freshwater Lake | GVTDLKTLALAGVAAVAGPVLKALDPASPEFGVGSK |
| Ga0209444_101416741 | 3300027756 | Freshwater Lake | AGTTDLKTLALAGVAAVAGPVLKALDPSATEFGRGSN |
| Ga0209088_102861101 | 3300027763 | Freshwater Lake | IRAAVASVIALYLAGTTDLKTLALAGVAAVAGPVLKALDPSASEFGVNAK |
| Ga0209829_101267952 | 3300027777 | Freshwater Lake | LRAAVAAVLALYLSGVTDLKTLALAGVAAVAGPVLKALDPASPEFGVGSK |
| Ga0209246_101902841 | 3300027785 | Freshwater Lake | SIIALYLAGTTDLKTLALAGVAAVAGPVLKALDPSATEFGRGSN |
| Ga0209246_102839561 | 3300027785 | Freshwater Lake | TTDLKTLALAGVAAVAGPVLKALDPSATEFGVNSK |
| Ga0209373_100417261 | 3300027796 | Freshwater | ASVLALYLAGITDPKTLAMAGVSAVAGPLLKWLDPKAVEFGRGSK |
| Ga0209353_104470882 | 3300027798 | Freshwater Lake | LALYLAGTTDLKTLALAGVAAVAGPVLKALDPSATEFGRGSN |
| Ga0209668_108936661 | 3300027899 | Freshwater Lake Sediment | LRAGIASVIALWLAGVTDPKALATAGIAAIAGPVLKALDPKLAEFGRGSK |
| Ga0209400_11190933 | 3300027963 | Freshwater Lake | LRAAVAAVLALYLSGVTDLKTLALAGVAAVAGPVLKALDPSSPEFGVGSK |
| Ga0209400_11275321 | 3300027963 | Freshwater Lake | LRAAVAAVLALYLSGVTDLKTLALAGVAAVAGPVLKALDPSSTEFGVGSK |
| Ga0209401_13338891 | 3300027971 | Freshwater Lake | TALYLAGETDPKALALAFVAAFAGPVLKALDSNSPEFGRGSK |
| Ga0209299_100910110 | 3300027974 | Freshwater Lake | ALALYLAGNTDLKALATAAVAAVAGPILKAIDPSATEFGIGSK |
| Ga0209299_11913991 | 3300027974 | Freshwater Lake | LYLAGNTDLKALAMAAVAAVAGPILKAIDPSATEFGIGSK |
| Ga0247723_10557702 | 3300028025 | Deep Subsurface Sediment | RAGVASVLALYLAGVTDPKALLMAGVAAVAGPLLKAIDPSATEFGRGSK |
| Ga0304729_11258411 | 3300028392 | Freshwater Lake | VTDPKDLALAALAAVAGPILKALDPKATEFGIGSK |
| Ga0304728_10137211 | 3300028393 | Freshwater Lake | AAVLALYLAGNTDLKALATAGVAAVAGPLLKALDSSATEFGRGSN |
| Ga0315293_104268761 | 3300031746 | Sediment | ALALYIAGITDPKALLSAATAAVAAPLLKAIDPSAKEFGKKK |
| Ga0315293_108139772 | 3300031746 | Sediment | GTSDLKTLALAGVAAVAGPVLKALDPNSSEFGVGSK |
| Ga0315288_105384332 | 3300031772 | Sediment | AGIAAVIALWLAGVTDPKALATAGIAAIAGPLLKAIDPSATEFGRGSK |
| Ga0315288_112110011 | 3300031772 | Sediment | AGFAAVLALYLAGNTDLKTLATAGVAAIAGPLLKALDSSATEFGRGSN |
| Ga0315899_109647411 | 3300031784 | Freshwater | AGVASVIALYLAGVTDPKALATAGIAAIAGPLLKALDPKASEFGRGAK |
| Ga0315909_104426721 | 3300031857 | Freshwater | LRAGIAAAIALWLAGETDLKTIGLAALAAVAGPVLKALDPNASEFGRGSK |
| Ga0315285_107892361 | 3300031885 | Sediment | YLAGVTDPKALAAAGVSAIAGPLLKWLDPKSTDFGRGSK |
| Ga0315294_101728886 | 3300031952 | Sediment | VLALYLAGTTDLKTLALAGVAAVAGPLLKALDSSATEFGRGSN |
| Ga0315901_111179891 | 3300031963 | Freshwater | VTDPKALASAALAAIAGPLLKALDPKATEFGRGSK |
| Ga0315274_101432277 | 3300031999 | Sediment | LYLAGEHSPKALLAAAVAAVAGPVLKALDSTAPEFGRGSK |
| Ga0315274_103459962 | 3300031999 | Sediment | SVIALYLAGVTDPKALATAAVAAIAGPLLKALDPKASEFGRGAK |
| Ga0315289_115051042 | 3300032046 | Sediment | AGETSPKALLAAAVAAVAGPVLKALDPKATEFGRGSK |
| Ga0315284_115013752 | 3300032053 | Sediment | SVIALWLAGVTDPKALATAGIAAIAGPVLKALDPKCTEFGRGSK |
| Ga0315284_118128191 | 3300032053 | Sediment | FAASLALYLAGISDPKALLSAAAAAIAAPLLKAIDPSAKEFGKKK |
| Ga0315903_1000506238 | 3300032116 | Freshwater | AGVTDPKALATAGIAAIAGPLLKALDPKATEFGRGSK |
| Ga0315903_103963022 | 3300032116 | Freshwater | AGVTDPKALASAALAAIAGPLLKALDPKAVEFGRGSK |
| Ga0315283_106032531 | 3300032164 | Sediment | YARAGFAAVLALYLAGTTDLKTLALAGVAAVAGPLLKALDSSATEFGRGSN |
| Ga0315286_100874361 | 3300032342 | Sediment | AAAAVTALYMAGETDPKKLAMAFVAGIVGPVMKALDTNSPEFGRKK |
| Ga0334978_0246816_2_118 | 3300033979 | Freshwater | LAGETNLKTLALAALTGAAGPLLKALDSSDPSFGRGAE |
| Ga0334992_0216153_2_118 | 3300033992 | Freshwater | LAGVTDPKALLMAGVAAVAGPLLKAIDPSATEFGRGSK |
| Ga0334979_0341157_2_130 | 3300033996 | Freshwater | LALYLAGVTDPKALATAGIAAIAGPLLKALDPKATEFGRGAK |
| Ga0334986_0461474_2_148 | 3300034012 | Freshwater | AGIASVIALWLAGVTDPKALATAGIAAIAGPVLKALDPKSADFGRGSK |
| Ga0334995_0043795_3593_3715 | 3300034062 | Freshwater | LYLAGETSPKALASAALAAVAGPVLKALDSNSPEFGRGSK |
| Ga0335028_0525342_1_135 | 3300034071 | Freshwater | SVIALYLAGVTDPKALATAGIAAIAGPLLKALDPKATEFGRGAK |
| Ga0335022_0079838_1962_2102 | 3300034095 | Freshwater | VASVLALYLAGVTDPKALLMAGVAAVAGPLLKAIDPSATEFGRGSK |
| Ga0335030_0726597_31_162 | 3300034103 | Freshwater | VLALYLAGTTDLKTLALAGVAAVAGPVLKALDPSATEFGVNAK |
| Ga0335031_0559326_2_154 | 3300034104 | Freshwater | LRAAVASVIALYLAGVTDPKALASAGIAAIAGPVLKALDPKAAEFGKKTK |
| Ga0335036_0220519_1_123 | 3300034106 | Freshwater | LYLAGETDPKNLATAALAAVAGPVLKALDPKSTEFGRGSK |
| Ga0335036_0735953_3_113 | 3300034106 | Freshwater | GVTDPKALASAGLAAIAGPVLKALDPKATEFGKKAK |
| Ga0335017_0101407_1567_1692 | 3300034167 | Freshwater | ALWLAGVNDPKALAMAGVSAVAGPVLKWLDPKSADFGRGSN |
| Ga0335065_0709482_435_572 | 3300034200 | Freshwater | ASVLALYLAGVTDPKALLMAGVAAVAGPLLKAIDPSATEFGRGSK |
| Ga0335052_0113493_1482_1625 | 3300034279 | Freshwater | GIASVIALYLAGVTDPKALASAALAAIAGPLLKALDPKAAEFGRGSK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |