NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F061604

Metagenome Family F061604

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F061604
Family Type Metagenome
Number of Sequences 131
Average Sequence Length 53 residues
Representative Sequence PISDHQACLAMVEVKLARLQETADHIDSYIDACAYLALACELITEKDEQYV
Number of Associated Samples 85
Number of Associated Scaffolds 131

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 9.92 %
% of genes from short scaffolds (< 2000 bps) 11.45 %
Associated GOLD sequencing projects 79
AlphaFold2 3D model prediction Yes
3D model pTM-score0.67

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (80.916 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake
(16.030 % of family members)
Environment Ontology (ENVO) Unclassified
(66.412 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(61.069 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 44.30%    β-sheet: 0.00%    Coil/Unstructured: 55.70%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.67
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 131 Family Scaffolds
PF14279HNH_5 3.82
PF09723Zn-ribbon_8 3.05
PF05065Phage_capsid 1.53
PF01844HNH 1.53
PF00145DNA_methylase 0.76
PF02467Whib 0.76
PF04586Peptidase_S78 0.76
PF05869Dam 0.76
PF04860Phage_portal 0.76

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 131 Family Scaffolds
COG4653Predicted phage phi-C31 gp36 major capsid-like proteinMobilome: prophages, transposons [X] 1.53
COG0270DNA-cytosine methylaseReplication, recombination and repair [L] 0.76
COG3740Phage head maturation proteaseMobilome: prophages, transposons [X] 0.76


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A80.92 %
All OrganismsrootAll Organisms19.08 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300003490|JGI25926J51410_1086984All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage506Open in IMG/M
3300006863|Ga0075459_1006208All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1936Open in IMG/M
3300008108|Ga0114341_10004522All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage12355Open in IMG/M
3300008116|Ga0114350_1046864All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1597Open in IMG/M
3300008266|Ga0114363_1006258All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage6858Open in IMG/M
3300008266|Ga0114363_1119703All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage916Open in IMG/M
3300008266|Ga0114363_1173095All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage693Open in IMG/M
3300008266|Ga0114363_1203097All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage606Open in IMG/M
3300008450|Ga0114880_1022602All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2909Open in IMG/M
3300009155|Ga0114968_10055038All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2548Open in IMG/M
3300009184|Ga0114976_10001300All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage15555Open in IMG/M
3300013004|Ga0164293_10018954All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia5745Open in IMG/M
3300017716|Ga0181350_1052689All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1077Open in IMG/M
3300020048|Ga0207193_1190623All Organisms → Viruses → Predicted Viral1638Open in IMG/M
3300022179|Ga0181353_1028938All Organisms → Viruses → Predicted Viral1468Open in IMG/M
3300023184|Ga0214919_10265988All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1214Open in IMG/M
3300027710|Ga0209599_10035556All Organisms → Viruses → Predicted Viral1342Open in IMG/M
3300028025|Ga0247723_1025020All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1952Open in IMG/M
3300031857|Ga0315909_10005786All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage14068Open in IMG/M
3300032093|Ga0315902_10382049All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1284Open in IMG/M
3300034061|Ga0334987_0004417All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage13443Open in IMG/M
3300034062|Ga0334995_0149382All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1689Open in IMG/M
3300034104|Ga0335031_0089811All Organisms → Viruses → Predicted Viral2176Open in IMG/M
3300034106|Ga0335036_0303155All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1060Open in IMG/M
3300034523|Ga0310143_04156All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2349Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater16.03%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake16.03%
Freshwater, PlanktonEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton15.27%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake14.50%
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater14.50%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake6.11%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment3.82%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous2.29%
Freshwater LenticEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic1.53%
Deep SubsurfaceEnvironmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface1.53%
Deep Subsurface SedimentEnvironmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment1.53%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater0.76%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater0.76%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment0.76%
Freshwater Lake SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment0.76%
Freshwater WetlandsEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands0.76%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine0.76%
HypersalineEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline0.76%
Meromictic PondEnvironmental → Aquatic → Unclassified → Unclassified → Unclassified → Meromictic Pond0.76%
Fracking WaterEnvironmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water0.76%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000525Hypersaline microbial communities from Lake Vida, Antarctica - Brine Hole Two >0.2 micronEnvironmentalOpen in IMG/M
3300003490Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SNEnvironmentalOpen in IMG/M
3300003497Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.DNEnvironmentalOpen in IMG/M
3300004112Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 2)EnvironmentalOpen in IMG/M
3300006863Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_>0.8_DNAEnvironmentalOpen in IMG/M
3300006875Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_>0.8_DNAEnvironmentalOpen in IMG/M
3300008107Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NAEnvironmentalOpen in IMG/M
3300008108Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NAEnvironmentalOpen in IMG/M
3300008114Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NAEnvironmentalOpen in IMG/M
3300008116Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NAEnvironmentalOpen in IMG/M
3300008119Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0110-C-NAEnvironmentalOpen in IMG/M
3300008121Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample HABS-E2014-0110-100-LTREnvironmentalOpen in IMG/M
3300008262Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-C-NAEnvironmentalOpen in IMG/M
3300008266Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NAEnvironmentalOpen in IMG/M
3300008448Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigsEnvironmentalOpen in IMG/M
3300008450Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigsEnvironmentalOpen in IMG/M
3300009085Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 10-12cm September2015EnvironmentalOpen in IMG/M
3300009152Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaGEnvironmentalOpen in IMG/M
3300009155Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaGEnvironmentalOpen in IMG/M
3300009158Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaGEnvironmentalOpen in IMG/M
3300009159Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaGEnvironmentalOpen in IMG/M
3300009160Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_MF_MetaGEnvironmentalOpen in IMG/M
3300009163Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaGEnvironmentalOpen in IMG/M
3300009168Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015EnvironmentalOpen in IMG/M
3300009169Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015EnvironmentalOpen in IMG/M
3300009170Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm May2015EnvironmentalOpen in IMG/M
3300009183Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaGEnvironmentalOpen in IMG/M
3300009184Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaGEnvironmentalOpen in IMG/M
3300009419Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FTEnvironmentalOpen in IMG/M
3300009450Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, 4m depth; DNA IDBA-UDEnvironmentalOpen in IMG/M
3300010885northern Canada Lakes Co-assemblyEnvironmentalOpen in IMG/M
3300012964Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 4 metaGEnvironmentalOpen in IMG/M
3300013004Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaGEnvironmentalOpen in IMG/M
3300013006Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaGEnvironmentalOpen in IMG/M
3300013372Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPsEnvironmentalOpen in IMG/M
3300017716Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.DCM.DEnvironmentalOpen in IMG/M
3300017723Freshwater viral communities from Lake Michigan, USA - Su13.ND.MM110.S.NEnvironmentalOpen in IMG/M
3300017736Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.D.NEnvironmentalOpen in IMG/M
3300017747Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.S.NEnvironmentalOpen in IMG/M
3300017778Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.DEnvironmentalOpen in IMG/M
3300017780Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.D.NEnvironmentalOpen in IMG/M
3300017784Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.D.NEnvironmentalOpen in IMG/M
3300020048Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915EnvironmentalOpen in IMG/M
3300020498Freshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300022179Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.NEnvironmentalOpen in IMG/M
3300023184Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503EnvironmentalOpen in IMG/M
3300025732Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300027193Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.541 (SPAdes)EnvironmentalOpen in IMG/M
3300027642Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.SD (SPAdes)EnvironmentalOpen in IMG/M
3300027659Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300027693Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015 (SPAdes)EnvironmentalOpen in IMG/M
3300027697Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.DN (SPAdes)EnvironmentalOpen in IMG/M
3300027710Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)EnvironmentalOpen in IMG/M
3300027734Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027736Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027806Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027963Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027969Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027971Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027974Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_MF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300028025Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FCEnvironmentalOpen in IMG/M
3300028114 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_13.5mEnvironmentalOpen in IMG/M
3300031758Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123EnvironmentalOpen in IMG/M
3300031786Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA124EnvironmentalOpen in IMG/M
3300031787Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114EnvironmentalOpen in IMG/M
3300031857Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125EnvironmentalOpen in IMG/M
3300031963Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116EnvironmentalOpen in IMG/M
3300032046Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_40EnvironmentalOpen in IMG/M
3300032050Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA122EnvironmentalOpen in IMG/M
3300032092Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121EnvironmentalOpen in IMG/M
3300032093Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA117EnvironmentalOpen in IMG/M
3300032116Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA119EnvironmentalOpen in IMG/M
3300033993Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037EnvironmentalOpen in IMG/M
3300033994Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046EnvironmentalOpen in IMG/M
3300033996Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004EnvironmentalOpen in IMG/M
3300034012Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027EnvironmentalOpen in IMG/M
3300034061Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028EnvironmentalOpen in IMG/M
3300034062Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045EnvironmentalOpen in IMG/M
3300034092Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Aug2012-rr0069EnvironmentalOpen in IMG/M
3300034102Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112EnvironmentalOpen in IMG/M
3300034104Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120EnvironmentalOpen in IMG/M
3300034106Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131EnvironmentalOpen in IMG/M
3300034110Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME01Jun2009D10-rr0171EnvironmentalOpen in IMG/M
3300034111Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Oct2011-rr0186EnvironmentalOpen in IMG/M
3300034523Fracking water microbial communities from deep shales in Oklahoma, United States - K-4-AEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
JGI1221J11331_102159913300000525HypersalineEVKLARLQESPSHMDSYLDAVAYLAIACELATEDSALYV*
JGI25926J51410_108698413300003490Freshwater LakePRINQTRIALRLQQMLETPISDHQACLAMVEVKLARLQETADHVDSYIDACAYLALACELITERDEQYV*
JGI25925J51416_1006048513300003497Freshwater LakeVEDYQACLAMVEVKLSRIQESPTHIDSYIDACAYLALACQLKTEQDDLYV*
Ga0065166_1019049623300004112Freshwater LakeLAMVEIKLSRIQETKTHIDSYLDAIAYLALACELATEEDELYV*
Ga0075459_100620813300006863AqueousLTQLFEIEINDYDACLAMVEIKLSRIQESKLHIDSYLDAIAYLALACELATEKDELYV*
Ga0075473_1001712393300006875AqueousYDACLAMVEIKLSRIQESKLHIDSYLDAIAYLALACELATEKDELYV*
Ga0114340_106197453300008107Freshwater, PlanktonMLEVPISDHQACLAMVEVKLARLQETADHIDSYIDACAYLALACELITEKDDNYV*
Ga0114341_1000452243300008108Freshwater, PlanktonMLEVPISDHQACLAMVEVKLARLQETADHIDSYIDACAYLALACELITEKDENYV*
Ga0114341_1008012913300008108Freshwater, PlanktonSDHQACLAMVEVKLARLQETADHIDSYIDACAYLALACELITEKDEQYV*
Ga0114341_1020889113300008108Freshwater, PlanktonDHQACLAMVEVKLARLQETRDHIDSYIDACAYLALACELITEKDELYV*
Ga0114347_107177113300008114Freshwater, PlanktonMLEVPISDHQACLAMVEVKLARLQETADHIDSYIDACAYLALACELITEKDEKYV*
Ga0114350_104686423300008116Freshwater, PlanktonMLEIPISDYQACLAMVEVKLARLQETPNHIDSYVDACAYLALACELSTEEDEGEYYV*
Ga0114354_105657623300008119Freshwater, PlanktonMLETPISDHQACLAMVEVKLARLQETADHIDSYIDACAYLALACELITERDEQYV*
Ga0114354_113204713300008119Freshwater, PlanktonEVKLARLQETADHIDSYIDACAYLALACELITEKDENYV*
Ga0114356_141682013300008121Freshwater, PlanktonHQACLAMVEVKLARLQETADHIDSYIDACAYLALACELITERDEQYV*
Ga0114337_112076153300008262Freshwater, PlanktonMLETPISDHQACLAMVEVKLARLQETADHIDSYIDACAYLALACELITEKDEQYV*
Ga0114337_124501813300008262Freshwater, PlanktonMVEVKLARLQETADHIDSYIDACAYLALACELITEKDEKYV*
Ga0114363_1006258113300008266Freshwater, PlanktonMLEVPISDYQACLAMVEVKLARLQETPNHIDSYVDACAYLALACELSTEEDEGEYYA*
Ga0114363_108995513300008266Freshwater, PlanktonDHQACLAMVEVKLARLQETADHIDSYIDACAYLALACELITEKDEQYV*
Ga0114363_109522513300008266Freshwater, PlanktonSDHQACLAMVEVKLARLQETADHIDSYIDACAYLALACELITEKDENYV*
Ga0114363_110063253300008266Freshwater, PlanktonNQDRIARRLTNLLDFPIEDYQACLAMVEVKLSRIQESPTHIDSYIDACAYLALACELKNGEDELYV*
Ga0114363_111970323300008266Freshwater, PlanktonMLEIPVSDYQACLAMVEVKLARLQETPNHIDSYIDACAYLALACELSTEEDEGEYYV*
Ga0114363_117309513300008266Freshwater, PlanktonMLEIPITDHQACLAMVEVKLARLQETPNHIDSYIDACAYLAIACELSTE
Ga0114363_117340223300008266Freshwater, PlanktonDHQACLAMVEVKLARLQETADHIDSYIDACAYLALACELITERDIDYV*
Ga0114363_119695213300008266Freshwater, PlanktonMVEVKLARLQETADHIDSYIDACAYLALACELITEKDEQYV*
Ga0114363_120309723300008266Freshwater, PlanktonMLEVPISDYQACLAMVEVKLARLQETPNHIDSYVDACAYLALACELSTEEDEGEYYV*
Ga0114876_120118423300008448Freshwater LakeLAMVEVKLARLQETADHVDSYIDACAYLALACELITERDENYV*
Ga0114880_102260213300008450Freshwater LakeCLAMVEVKLSRIQESPGHIDSYIDACAYLALACELKTEEDELYV*
Ga0114880_112553133300008450Freshwater LakeMVEVKLSRIQESPNHIDSYIDACAYLALACELKTEENEVYV*
Ga0114880_115440713300008450Freshwater LakeLSRIQESPNHIDSYIDACAYLALACELKTEENEIYV*
Ga0114880_118855123300008450Freshwater LakeHPRINQTRIALRLQQMLETPISDHQACLAMVEVKLARLQETADHIDSYIDACAYLALACELITERDEQYV*
Ga0114880_120438413300008450Freshwater LakeINQTRIALRLQQMLEVPISDHQACLAMVEVKLARLQETADHIDSYIDACAYLALACELITEKDEQYV*
Ga0114880_120438813300008450Freshwater LakeINQTRIALRLQQMLEVPISDHQACLAMVEVKLARLQETADHIDSYIDACAYLALACELITEKDEKYV*
Ga0114880_126012013300008450Freshwater LakeRINQTRIALRLQQMLEIPITDHQACLAMVEVKLARLQESPDHIDSYIDACSYLALACELSTEEDEKYV*
Ga0105103_1062726323300009085Freshwater SedimentRINQYRIAMRLQQLFEIPVTDYQACLALVEVKLARLQESHAHLDSYIDACAYLALAAELATEGDELYV*
Ga0114980_1005332863300009152Freshwater LakeCDRGSIYGHPRINQTRIAMRLQQLLDTPDEDYQACLALVEVKLARIQESPHYIDSYIDACAYIALAGMLATEEGLDGI*
Ga0114968_1005503843300009155Freshwater LakeMVEVKLARLQETPDHVDSYVDACAYLALACELITEKDDLYV*
Ga0114968_1040822113300009155Freshwater LakeTPISDHQACLAMVEVKLARLQETADHIDSYIDACAYLALACELITEKDEQYV*
Ga0114977_1076657923300009158Freshwater LakeHPRINQTRIAMRLQQLLDTPVADYQACLALVEVKLARIQESPHYIDSYIDACAYIALAGMLATEDELDGI*
Ga0114978_1057407123300009159Freshwater LakeRLQQLLETPITDYQACLALVEVKLARIQESPHHLDSFIDACAYIALAGELATEGDDFFAE
Ga0114981_1030179723300009160Freshwater LakeMRLQQLLDTPVADYQACLALVEVKLARIQESPHHIDSYIDACAYIALAGMLATEDELDGI
Ga0114970_1027960833300009163Freshwater LakeHPRINQTRIALRLQQLLDTPIADYQACLALVEVKLARIQESPHHIDSYIDACAYIALAGMLATERDLDGI*
Ga0105104_1052428013300009168Freshwater SedimentEVKLARLQETPTHLDSYIDACAYLALAAELSTEGDELYV*
Ga0105097_1049020213300009169Freshwater SedimentGAIYGHPKINQDRIARRLTNLLDFPIEDYQACLAMVEVKLSRIQESPTHIDSYIDACAYLALACELKTEEDELYV*
Ga0105096_1065308123300009170Freshwater SedimentDFPIEDYQACLAMVEVKLSRIQESPGHIDSYIDACAYLALACELKTEENEVYV*
Ga0114974_1004435713300009183Freshwater LakeQTRIAMRLQQLLDTPVADYQACLALVEVKLARIQESPHYIDSYIDACAYIALAGMLATEEELDGI*
Ga0114974_1028584813300009183Freshwater LakeLAMVEVKLARLQETADHIDSYIDACAYLALACELITEKDENYV*
Ga0114974_1076634513300009183Freshwater LakeQTRIAMRLQQLLDTPVADYQACLALVEVKLARIQESPHYIDSYIDACAYIALAGMLATEDELDGI*
Ga0114974_1078674913300009183Freshwater LakeTRIALRLQQMLEVPISDHQACLAMVEVKLARLQETADHIDSYIDACAYLALACELITEKDENYV*
Ga0114976_10001300213300009184Freshwater LakeMLETPISDHQACLAMVEVKLARLQETADHVDSYIDACAYLALACELITEKDEQYV*
Ga0114982_130484823300009419Deep SubsurfaceVEVKLSRIQESPSHIDSYIDACAYLALACELKTEEDELYV*
Ga0127391_100685563300009450Meromictic PondLSRIQESPHHLDSYIDASAYLALSAELATENDDYLAD*
Ga0133913_1149331033300010885Freshwater LakeHPRINQTRIAMRLQLLLETPITDYQACLAMVEVKLSRIQESPHVIDSYIDACAYLALAAELCTENDDYLVD*
Ga0133913_1185575233300010885Freshwater LakeETPISDHQACLAMVEVKLARLQETADHIDSYIDACAYLALACELITERDEQYV*
Ga0133913_1269522913300010885Freshwater LakeCLAMVEVKLARLQETADHIDSYIDACAYLALACELITEKDENYV*
Ga0153916_1315925033300012964Freshwater WetlandsEVKDYDACLAMVEIKLSRIQETKSHIDSYLDAIAYLALACELATEEDELYV*
Ga0164293_1001895483300013004FreshwaterGHPRINQTRIALRLQQMLETPISDHQACLAMVEVKLARLQETADHIDSYIDACAYLALACELITEKDEQYV*
Ga0164293_1011519953300013004FreshwaterGHPRINQTRIALRLQQMLETPISDHQACLAMVEVKLARLQETADHVDSYIDACAYLALACELITERDEQYV*
Ga0164293_1104143923300013004FreshwaterTPISDHQACLAMVEVKLARLQETADHVDSYIDACAYLALACELITERDEQYV*
Ga0164294_1120379513300013006FreshwaterMVEVKLARLQETADHVDSYIDACAYLALACELITEKDEQYV*
Ga0177922_1110137223300013372FreshwaterLSNLFNFPIKDYEACLAMVEVKLSRIQESPGHLDSYIDACAYLALACELKTEENEDYV*
Ga0181350_103249213300017716Freshwater LakeISDHQACLAMVEVKLARLQETADHVDSYIDACAYLALACELITERDENYV
Ga0181350_105268913300017716Freshwater LakeIALRLQQMLETPISDHQACLAMVEVKLARLQETADHVDSYIDACAYLALACELITERDENYV
Ga0181350_112547523300017716Freshwater LakeKLARLQETADHVDSYIDACAYLALACELITERDEQYV
Ga0181362_108007813300017723Freshwater LakeRIALRLQQMLETPISDHQACLAMVEVKLARLQETADHVDSYIDACAYLALACELITERDENYV
Ga0181365_110885013300017736Freshwater LakeNQTRIALRLQQMLETPISDHQACLAMVEVKLARLQETADHVDSYIDACAYLALACELITERDENYV
Ga0181365_114847323300017736Freshwater LakeSDHQACLAMVEVKLARLQETADHVDSYIDACAYLALACELITERDEQYV
Ga0181352_112408413300017747Freshwater LakeLRLQQMLETPISDHQACLAMVEVKLARLQETADHVDSYIDACAYLALACELITEKDEQYV
Ga0181352_113004823300017747Freshwater LakeQTRIALRLQQMLEVPISDHQACLAMVEVKLARLQETADHIDSYIDACAYLALACELITERDEQYV
Ga0181352_119204233300017747Freshwater LakeSDHQACLAMVEVKLARLQETADHVDSYIDACAYLALACELITERDENYV
Ga0181349_102823013300017778Freshwater LakeCLAMVEVKLARLQETPDHIDSYIDAVAYLSLACELSTEQDEKYV
Ga0181346_109456713300017780Freshwater LakeLARLQETADHVDSYIDACAYLALACELITEKDEKYV
Ga0181348_109354213300017784Freshwater LakeNQTRIALRLQQMLETPISDHQACLAMVEVKLARLQETADHVDSYIDACAYLALACELITEKDEQYV
Ga0207193_119062343300020048Freshwater Lake SedimentLAMVEVKLARLQETADHTDSYIDACAYLALACELITEKDEQYV
Ga0208050_102416723300020498FreshwaterMLEVPISDHQACLAMVEVKLARLQETADHIDSYIDACAYLALACELITEKDEQYV
Ga0181353_102893813300022179Freshwater LakeKLARLQETADHVDSYIDACAYLALACELITEKDEQYV
Ga0214919_1026598813300023184FreshwaterAMVEVKLSRIQESPKHLDSYIDACAYIALAAQLQTEEDDLYV
Ga0208784_106042713300025732AqueousASRLTQFFEIEINDYDACLAMVEIKLSRIQESKLHIDSYLDAIAYLALACELATEKDELY
Ga0208800_104590923300027193EstuarineQACLAMVEVKLARLQETADHVDSYIDACAYLALACELITERDEQYV
Ga0209135_114762713300027642Freshwater LakeHPRINQTRIALRLQQMLETPISDHQACLAMVEVKLARLQETADHVDSYIDACAYLALACELITERDEQYV
Ga0208975_109382733300027659Freshwater LenticMRLQQLLDTPVADYQACLALVEVKLARIQESPHYIDSYIDACAYIALAGMLATEDELDGI
Ga0208975_115525923300027659Freshwater LenticMVEVKLARLQETADHVDSYIDACAYLALACELITERDEQYV
Ga0209704_123788913300027693Freshwater SedimentFPVEDYQACLAMVEVKLSRIQESPNHIDSYIDACAYLALACELKTEENEVYV
Ga0209033_111235423300027697Freshwater LakeTRIALRLQQMLETPISDHQACLAMVEVKLARLQETADHVDSYIDACAYLALACELITEKDEQYV
Ga0209599_1003555613300027710Deep SubsurfaceINQTRIALRLQQMLETPISDHQACLAMVEVKLARLQETADHIDSYIDACAYLALACELITEKDENYV
Ga0209087_106755213300027734Freshwater LakeLQQLLETPITDYQACLALVEVKLARIQESPHHLDSFIDACAYIALAGELSTEGDDFFVD
Ga0209190_128283413300027736Freshwater LakeMLETPISDHQACLAMVEVKLARLQETADHVDSYIDACAYLALACELITEKDEQYV
Ga0209985_1014249413300027806Freshwater LakeMVEVKLARLQETADHIDSYIDACAYLALACELITEKDEQYV
Ga0209400_104273373300027963Freshwater LakeTPISDHQACLAMVEVKLARLQETADHIDSYIDACAYLALACELITEKDEQYV
Ga0209191_130013713300027969Freshwater LakeLTNFFEIEVTDYDSCLAMVEIKLARIQETKTHIDSYLDAIAYLALACELASEQDELYV
Ga0209401_103429973300027971Freshwater LakeLETPISDHQACLAMVEVKLARLQETADHIDSYIDACAYLALACELITERDEQYV
Ga0209299_121804813300027974Freshwater LakeTPIADYQACLALVEVKLARIQESPHHIDSYIDACAYIALAGMLATERDLDGI
Ga0247723_102502053300028025Deep Subsurface SedimentQTRIALRLQQMLEVPISDHQACLAMVEVKLARLQETADHIDSYIDACAYLALACELITEKDEKYV
Ga0247723_109534313300028025Deep Subsurface SedimentPISDHQACLAMVEVKLARLQETADHIDSYIDACAYLALACELITEKDEQYV
(restricted) Ga0247835_129722123300028114FreshwaterRVNQTRIALRLQQMLEIPISDYQACLAMVEVKLARLQETPNHIDSYIDAVAYLSLACELSTEEDEKYV
Ga0315907_1011273713300031758FreshwaterIEDYQACLAMVEVKLSRIQESPTHIDSYIDACAYLALACELKNGEDELYV
Ga0315907_1038642723300031758FreshwaterISDHQACLAMVEVKLARLQETADHIDSYIDACAYLALACELITEKDEQYV
Ga0315908_1011974163300031786FreshwaterACLAMVEVKLARLQETADHIDSYIDACAYLALACELITERDENYV
Ga0315908_1138170323300031786FreshwaterRINQTRIALRLQQMLETPISDHQACLAMVEVKLARLQETADHIDSYIDACAYLALACELITERDEQYV
Ga0315900_1065921913300031787FreshwaterETPISDHQACLAMVEVKLARLQETADHIDSYIDACAYLALACELITEKDEQYV
Ga0315909_10005786193300031857FreshwaterMVEVKLARLQETPNHIDSYVDACAYLALACELSTEEDEGEYYA
Ga0315909_1014806463300031857FreshwaterETPISDHQACLAMVEVKLARLQETADHIDSYIDACAYLALACELITEKDENYV
Ga0315901_1054066423300031963FreshwaterKLARLQETADHIDSYIDACAYLALACELITERDIDYV
Ga0315901_1054498713300031963FreshwaterKLSRIQESPGHIDSYIDACAYLALACELKTEENELYV
Ga0315901_1071907723300031963FreshwaterEFARLQETADHIDSYIDACAYLALACELITEKDENYV
Ga0315901_1103508823300031963FreshwaterTRIALRLQQMLETPISDHQACLAMVEVKLARLQETADHIDSYIDACAYLALACELITEKDEQYV
Ga0315289_1084886313300032046SedimentRIAMRLQLLLDTPVADYQACLALVEVKLARIQESPHFLDSYIDACAYLALAGMLATEGELDGI
Ga0315906_10007107223300032050FreshwaterHPKINQDRIARRLTNLLDFPIEDYQACLAMVEVKLSRIQESPTHIDSYIDACAYLALACELKNGEDELYV
Ga0315905_1021374063300032092FreshwaterRIALRLQQMLETPISDHQACLAMVEVKLARLQETADHIDSYIDACAYLALACELITEKDEQYV
Ga0315902_1038204933300032093FreshwaterMLEIPITDHQACLAMVEVKLARLQETPNHIDSYIDACAYLAIACELSTEEDDIYV
Ga0315902_1042169343300032093FreshwaterPRINQTRIALRLQQMLETPISDHQACLAMVEVKLARLQETADHIDSYIDACAYLALACELITEKDEQYV
Ga0315902_1074540013300032093FreshwaterACLAMVEVKLARLQETADHIDSYIDACAYLALACELITEKDEQYV
Ga0315903_1029642213300032116FreshwaterCLAMVEVKLARLQETADHIDSYIDACAYLALACELITEKDEQYV
Ga0315903_1078916113300032116FreshwaterALRLQQMLETPISDHQACLAMVEVKLARLQETADHIDSYIDACAYLALACELITEKDEQY
Ga0315903_1093496323300032116FreshwaterCLAMVEVKLARLQETADHIDSYIDACAYLALACELITERDIDYV
Ga0334994_0182065_2_1483300033993FreshwaterDHQACLAMVEVKLARLQETADHIDSYIDACAYLALACELITEKDEQYV
Ga0334994_0427758_490_6333300033993FreshwaterHQACLAMVEVKLARLQETADHIDSYIDACAYLALACELITERDENYV
Ga0334996_0161569_115_2823300033994FreshwaterMLEVPISDHQACLAMVEVKLARLQETGDHIDSYIDACAYLALACELITEKDEKYV
Ga0334979_0039288_1086_12533300033996FreshwaterMLETPISDHQACLAMVEVKLARLQETADHIDSYIDACAYLALACELITERDEQYV
Ga0334986_0314953_687_8243300034012FreshwaterLAMVEVKLARLQETPNHIDSYVDACAYLALACELSTEEDEGEYYV
Ga0334986_0477395_506_6163300034012FreshwaterLARLQETADHVDSYIDACAYLALACELITEKDEQYV
Ga0334987_0004417_609_7763300034061FreshwaterMLEIPISDYQACLAMVEVKLARLQETPNHIDSYIDAVAYLSLACELSTEEDEQYV
Ga0334995_0149382_462_6293300034062FreshwaterMLETPISDHQACLAMVEVKLARLQETADHIDSYIDACAYLALACELITEKDENYV
Ga0335010_0530940_438_6113300034092FreshwaterQQMLETPISDHQACLAMVEVKLARLQETADHIDSYIDACAYLALACELITERDEQYV
Ga0335029_0175273_2_1423300034102FreshwaterQACLAMVEVKLSRIQESPGHIDSYIDACAYLALACELKTEEDELYV
Ga0335031_0089811_1994_21763300034104FreshwaterLRLQQMLETPISDHQACLAMVEVKLARLQETADHIDSYIDACAYLALACELITERDEQYV
Ga0335036_0303155_1_1263300034106FreshwaterMVEVKLARLQETPDHIDSFIDACAYLALACELITEKDEQYV
Ga0335055_0029902_135_3173300034110FreshwaterMRLQQLFEIPVTDYQACLALVEVKLARLQESHAHLDSYIDACAYLALAAELATEGDELYV
Ga0335063_0152492_1210_13413300034111FreshwaterLAMVEVKLARLQETADHIDSYIDACAYLALACELITEKDEQYV
Ga0335063_0598547_2_1663300034111FreshwaterLETPISDHQACLAMVEVKLARLQETADHIDSYIDACAYLALACELITEKDEQYV
Ga0310143_04156_799_9243300034523Fracking WaterMVEVKLARLQETPDHIDSYIDACAYLAIACELITEKDELYV


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