Metagenome Family F061598

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F061598
Family Type	Metagenome
Number of Sequences	131
Average Sequence Length	103 residues
Representative Sequence	VTVGLLSVATVPAAIAYTHYRDVELLHAGWAAIPAFLLGAVALLLARAARRRTERTIGRVGGRGVTRVGRFLGALGVYLALAAALSVGVYELLNHLSA
Number of Associated Samples	103
Number of Associated Scaffolds	131

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	26.98 %
% of genes near scaffold ends (potentially truncated)	47.33 %
% of genes from short scaffolds (< 2000 bps)	85.50 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.51

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (67.939 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (14.504 % of family members)
Environment Ontology (ENVO)	Unclassified (31.298 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (51.145 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 69.84% β-sheet: 0.00% Coil/Unstructured: 30.16%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.51
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.51
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 131 Family Scaffolds
PF13413	HTH_25	57.25
PF02653	BPD_transp_2	17.56
PF00994	MoCF_biosynth	6.11
PF00005	ABC_tran	1.53
PF09397	FtsK_gamma	0.76
PF00154	RecA	0.76
PF00999	Na_H_Exchanger	0.76
PF15864	PglL_A	0.76

COG ID	Name	Functional Category	% Frequency in 131 Family Scaffolds
COG0025	NhaP-type Na+/H+ or K+/H+ antiporter	Inorganic ion transport and metabolism [P]	0.76
COG0468	RecA/RadA recombinase	Replication, recombination and repair [L]	0.76
COG0475	Kef-type K+ transport system, membrane component KefB	Inorganic ion transport and metabolism [P]	0.76
COG3004	Na+/H+ antiporter NhaA	Energy production and conversion [C]	0.76
COG3263	NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domains	Energy production and conversion [C]	0.76
COG4651	Predicted Kef-type K+ transport protein, K+/H+ antiporter domain	Inorganic ion transport and metabolism [P]	0.76

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	67.94 %
Unclassified	root	N/A	32.06 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	67.94 %
Unclassified	root	N/A	32.06 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	67.94 %
Unclassified	root	N/A	32.06 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	60.31 %
Unclassified	root	N/A	32.06 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.76 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	60.31 %
Unclassified	root	N/A	32.06 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.06 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	17.56 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6.11 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.06 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	17.56 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	6.11 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.06 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	6.11 %
Solirubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae	3.82 %
unclassified Solirubrobacterales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales	0.76 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.06 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	6.11 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	3.82 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	0.76 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.06 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	6.11 %
Solirubrobacter soli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	0.76 %
unclassified Solirubrobacter	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter	0.76 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	0.76 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.06 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	6.11 %
Solirubrobacter sp. URHD0082	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. URHD0082	0.76 %
Solirubrobacter soli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	0.76 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	0.76 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.76 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_100817462	All Organisms → cellular organisms → Bacteria	1462	Open in IMG/M
3300000956\|JGI10216J12902_107087341	All Organisms → cellular organisms → Bacteria	598	Open in IMG/M
3300001537\|A2065W1_10258269	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	854	Open in IMG/M
3300002568\|C688J35102_119310183	Not Available	671	Open in IMG/M
3300002568\|C688J35102_120866023	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1897	Open in IMG/M
3300002568\|C688J35102_120980369	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	4776	Open in IMG/M
3300004081\|Ga0063454_100676166	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	772	Open in IMG/M
3300004114\|Ga0062593_100254897	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1453	Open in IMG/M
3300004114\|Ga0062593_100430919	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1193	Open in IMG/M
3300004114\|Ga0062593_102968175	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	542	Open in IMG/M
3300004153\|Ga0063455_101606310	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	512	Open in IMG/M
3300004156\|Ga0062589_100627742	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	938	Open in IMG/M
3300004156\|Ga0062589_101614503	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	643	Open in IMG/M
3300004156\|Ga0062589_101646428	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	638	Open in IMG/M
3300005093\|Ga0062594_102459380	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	571	Open in IMG/M
3300005166\|Ga0066674_10560468	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	507	Open in IMG/M
3300005172\|Ga0066683_10078157	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1990	Open in IMG/M
3300005180\|Ga0066685_10645432	Not Available	728	Open in IMG/M
3300005186\|Ga0066676_11185708	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	500	Open in IMG/M
3300005294\|Ga0065705_10590442	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	711	Open in IMG/M
3300005331\|Ga0070670_100565755	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1015	Open in IMG/M
3300005332\|Ga0066388_101591778	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1149	Open in IMG/M
3300005365\|Ga0070688_100939442	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	684	Open in IMG/M
3300005459\|Ga0068867_101170427	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	705	Open in IMG/M
3300005468\|Ga0070707_100577097	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1087	Open in IMG/M
3300005526\|Ga0073909_10261617	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	773	Open in IMG/M
3300005549\|Ga0070704_102258631	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	506	Open in IMG/M
3300005556\|Ga0066707_10820357	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	574	Open in IMG/M
3300005560\|Ga0066670_10198242	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1204	Open in IMG/M
3300005616\|Ga0068852_102291262	Not Available	561	Open in IMG/M
3300005617\|Ga0068859_101101198	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	874	Open in IMG/M
3300005713\|Ga0066905_101093376	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	708	Open in IMG/M
3300005718\|Ga0068866_10127817	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1441	Open in IMG/M
3300005764\|Ga0066903_100049745	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	5085	Open in IMG/M
3300005764\|Ga0066903_102585961	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	984	Open in IMG/M
3300005764\|Ga0066903_105942916	Not Available	640	Open in IMG/M
3300005764\|Ga0066903_106106592	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	630	Open in IMG/M
3300005840\|Ga0068870_11388935	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	514	Open in IMG/M
3300009012\|Ga0066710_101664226	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	973	Open in IMG/M
3300009090\|Ga0099827_11335983	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	624	Open in IMG/M
3300009098\|Ga0105245_11399600	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	749	Open in IMG/M
3300009176\|Ga0105242_10678711	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1005	Open in IMG/M
3300009176\|Ga0105242_11635555	Not Available	678	Open in IMG/M
3300009792\|Ga0126374_10811601	Not Available	716	Open in IMG/M
3300009792\|Ga0126374_11620923	Not Available	535	Open in IMG/M
3300010039\|Ga0126309_11085703	Not Available	543	Open in IMG/M
3300010041\|Ga0126312_10109155	All Organisms → cellular organisms → Bacteria	1897	Open in IMG/M
3300010045\|Ga0126311_10033960	All Organisms → cellular organisms → Bacteria	3161	Open in IMG/M
3300010337\|Ga0134062_10627627	Not Available	556	Open in IMG/M
3300010358\|Ga0126370_11500644	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	641	Open in IMG/M
3300010366\|Ga0126379_10507518	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1278	Open in IMG/M
3300010375\|Ga0105239_11883679	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	693	Open in IMG/M
3300010375\|Ga0105239_12671809	Not Available	582	Open in IMG/M
3300010863\|Ga0124850_1066945	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1100	Open in IMG/M
3300011003\|Ga0138514_100004175	Not Available	2056	Open in IMG/M
3300012011\|Ga0120152_1059563	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	1192	Open in IMG/M
3300012201\|Ga0137365_10451984	Not Available	946	Open in IMG/M
3300012204\|Ga0137374_10032012	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	5732	Open in IMG/M
3300012204\|Ga0137374_10047586	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	4457	Open in IMG/M
3300012204\|Ga0137374_10063275	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	3697	Open in IMG/M
3300012208\|Ga0137376_10972036	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	728	Open in IMG/M
3300012350\|Ga0137372_10013635	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. URHD0082	7739	Open in IMG/M
3300012350\|Ga0137372_10224165	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1491	Open in IMG/M
3300012350\|Ga0137372_10231949	All Organisms → cellular organisms → Bacteria	1461	Open in IMG/M
3300012355\|Ga0137369_10066791	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	3063	Open in IMG/M
3300012358\|Ga0137368_10068966	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	2876	Open in IMG/M
3300012358\|Ga0137368_10555549	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	733	Open in IMG/M
3300012469\|Ga0150984_122207190	All Organisms → cellular organisms → Bacteria	3849	Open in IMG/M
3300012914\|Ga0157297_10179780	Not Available	715	Open in IMG/M
3300012958\|Ga0164299_11282969	Not Available	559	Open in IMG/M
3300012958\|Ga0164299_11578775	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	516	Open in IMG/M
3300012971\|Ga0126369_12650139	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	586	Open in IMG/M
3300012977\|Ga0134087_10036239	Not Available	1889	Open in IMG/M
3300012985\|Ga0164308_11780293	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	573	Open in IMG/M
3300012987\|Ga0164307_10517353	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	905	Open in IMG/M
3300012989\|Ga0164305_11026044	Not Available	703	Open in IMG/M
3300012989\|Ga0164305_11056418	Not Available	694	Open in IMG/M
3300013306\|Ga0163162_10320891	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1681	Open in IMG/M
3300013306\|Ga0163162_12003901	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	663	Open in IMG/M
3300013501\|Ga0120154_1083594	All Organisms → cellular organisms → Bacteria	737	Open in IMG/M
3300013763\|Ga0120179_1107542	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	615	Open in IMG/M
3300014058\|Ga0120149_1225498	Not Available	525	Open in IMG/M
3300014325\|Ga0163163_12947724	Not Available	531	Open in IMG/M
3300014326\|Ga0157380_12968274	Not Available	540	Open in IMG/M
3300014827\|Ga0120171_1024056	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2276	Open in IMG/M
3300014968\|Ga0157379_10936957	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	823	Open in IMG/M
3300015371\|Ga0132258_10111206	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	6485	Open in IMG/M
3300015371\|Ga0132258_11745779	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1569	Open in IMG/M
3300015371\|Ga0132258_12287707	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1356	Open in IMG/M
3300015371\|Ga0132258_12340677	All Organisms → cellular organisms → Bacteria	1339	Open in IMG/M
3300015372\|Ga0132256_102094811	Not Available	671	Open in IMG/M
3300015374\|Ga0132255_103951656	Not Available	629	Open in IMG/M
3300015374\|Ga0132255_105118857	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	555	Open in IMG/M
3300018061\|Ga0184619_10266739	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	787	Open in IMG/M
3300018071\|Ga0184618_10504621	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	507	Open in IMG/M
3300018072\|Ga0184635_10076822	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1307	Open in IMG/M
3300018076\|Ga0184609_10297148	Not Available	755	Open in IMG/M
3300018433\|Ga0066667_10214409	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1428	Open in IMG/M
3300021344\|Ga0193719_10282652	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	698	Open in IMG/M
3300021560\|Ga0126371_12039416	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	690	Open in IMG/M
3300022756\|Ga0222622_10654248	All Organisms → cellular organisms → Bacteria	761	Open in IMG/M
3300025899\|Ga0207642_10068461	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1680	Open in IMG/M
3300025922\|Ga0207646_11426999	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	601	Open in IMG/M
3300025925\|Ga0207650_10475204	Not Available	1043	Open in IMG/M
3300025927\|Ga0207687_11877008	Not Available	512	Open in IMG/M
3300026095\|Ga0207676_12595283	Not Available	503	Open in IMG/M
3300026327\|Ga0209266_1194931	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	745	Open in IMG/M
3300027821\|Ga0209811_10097621	Not Available	1053	Open in IMG/M
3300028380\|Ga0268265_11186381	Not Available	761	Open in IMG/M
3300028715\|Ga0307313_10213950	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	599	Open in IMG/M
3300028717\|Ga0307298_10210321	Not Available	574	Open in IMG/M
3300028718\|Ga0307307_10033829	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1461	Open in IMG/M
3300028784\|Ga0307282_10186969	Not Available	988	Open in IMG/M
3300028787\|Ga0307323_10303549	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	573	Open in IMG/M
3300028814\|Ga0307302_10498199	Not Available	605	Open in IMG/M
3300028828\|Ga0307312_10213121	Not Available	1243	Open in IMG/M
3300028878\|Ga0307278_10396566	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	607	Open in IMG/M
3300031170\|Ga0307498_10003338	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2661	Open in IMG/M
3300031199\|Ga0307495_10129942	Not Available	631	Open in IMG/M
3300031226\|Ga0307497_10686691	Not Available	527	Open in IMG/M
3300031543\|Ga0318516_10230996	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1070	Open in IMG/M
3300031544\|Ga0318534_10380502	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	811	Open in IMG/M
3300031938\|Ga0308175_102457003	Not Available	584	Open in IMG/M
3300032008\|Ga0318562_10771907	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	551	Open in IMG/M
3300032055\|Ga0318575_10592941	Not Available	562	Open in IMG/M
3300032066\|Ga0318514_10558273	Not Available	610	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	77.86%
Host-Associated	Host-Associated	22.14%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	74.05%
Plants	Host-Associated → Plants	22.14%
Aquatic	Environmental → Aquatic	3.82%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	73.28%
Rhizoplane	Host-Associated → Plants → Rhizoplane	12.21%
Rhizosphere	Host-Associated → Plants → Rhizosphere	9.16%
Sediment	Environmental → Aquatic → Sediment	3.82%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.76%
Roots	Host-Associated → Plants → Roots	0.76%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	61.07%
Loam	Environmental → Terrestrial → Soil → Loam	12.21%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.63%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.11%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.58%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.82%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.05%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.76%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.76%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	37.40%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.40%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.63%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.11%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.11%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.34%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	4.58%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.58%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.82%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.82%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	3.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.05%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.05%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.76%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.76%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.76%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	14.50%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	10.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	5.34%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.34%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.58%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	4.58%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	4.58%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	3.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.82%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	3.82%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.05%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.05%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.05%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.29%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.29%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.53%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.53%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.53%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.53%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.53%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.53%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.53%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.76%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.76%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.76%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.76%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.76%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.76%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.76%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.76%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.76%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001537	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A20-65 cm-11A)- 1 week illumina	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010863	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)	Environmental	Open in IMG/M
3300011003	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t9i015	Environmental	Open in IMG/M
3300012011	Permafrost microbial communities from Nunavut, Canada - A30_65cm_6M	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012914	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013501	Permafrost microbial communities from Nunavut, Canada - A35_65cm_0.25M	Environmental	Open in IMG/M
3300013763	Permafrost microbial communities from Nunavut, Canada - A15_65cm_0M	Environmental	Open in IMG/M
3300014058	Permafrost microbial communities from Nunavut, Canada - A3_65cm_0.25M	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014827	Permafrost microbial communities from Nunavut, Canada - A3_80cm_18M	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026327	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)	Environmental	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028715	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203	Environmental	Open in IMG/M
3300028717	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158	Environmental	Open in IMG/M
3300028718	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031199	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 7_S	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1008174621	3300000956	Soil	SSRSWPSPESSAARFLQRQMAFPTRSNSRPNARAWAAVVVGLLSVATVPAAIALTHYRDIELLHAGWAAIPAFLLGVVALMLARAARRRTERTIGRVGGRGVTRLGRFLGALGVYLALAAALSVGVYQLLNHLSA*
JGI10216J12902_1070873412	3300000956	Soil	MAFPTRSNSRPNTRAWLAVVVGLLSVATVPAAIAVTHYRDIELLHAGWAAIPAFLLGLAALLLARRASRRTERTIGRVGGRRVTRLGRFLGALGVYVALAAALSVGVYELLNRLSA*
A2065W1_102582692	3300001537	Permafrost	MAVPTRSSSSPNARAWGSLVVGLLSVACVPAAVAVAHYRGIELLKAGWAVAPGLALGVVSLFLARAARRRTERTIGRVGGRRLTRVGRLLGALGIYLAVAGALSVGVYELLNKLSG*
C688J35102_1193101832	3300002568	Soil	LLHAGWAAIPAFLLGLAALMLARAARRRTERTIGRVGGRRVTGIGRFLGALGIYLALAAALSVGVYELLNRLSA*
C688J35102_1208660231	3300002568	Soil	TRSSRKANWRAWGAVLLGLASVAAVPAAIAYTHYEDVELIRAAWAIAPGILLGLLALALARRARRRTERTIGRVGGVRVTRLGRFLGALGIYVALAAAVSIGVYELLNRLSE*
C688J35102_1209803694	3300002568	Soil	VLVGLLSVATVPAAIAVTRYRDIELLQAGWAAIPAFLLGLAALMLARAARRRTERTIGRVGGRRVTRIGRFLGALGIYLALAAALSVGVYELLNRLSA*
Ga0063454_1006761662	3300004081	Soil	AYTHYEDVDLIRAAWAIAPGILLGLLALALARRARRRTERTIGRVGGGRITKVGRFLGALGIYVALAAAVSIGVYELLNRLSS*
Ga0062593_1002548972	3300004114	Soil	MDVPTRSSRKTNWRAWGAVLLGLASVAAVPAAIAYTHYEDVDLVRAGWAIAPGLVLGLLAIALARRARRRTERTIGRVGGVRLTRFGRFLGALGIYVALAAAGSIGVYELLNRLSA*
Ga0062593_1004309191	3300004114	Soil	LGLASVAAVPAAVAYTHYEDVDLIRASWAIVPGIVLGILALVLARRARRRTERTIGRVGGVRLTRLGRFLGALGIYVALAAAGSIAVYELLNHLSG*
Ga0062593_1029681751	3300004114	Soil	VPAAIAYAHYRDLELLDAAWAAVPAFVLGVVSLMFARRARRRTERTIGRVGGRGVTRVGRLLGALGIYLALAAALSVAVYELLNRLSD*
Ga0063455_1016063101	3300004153	Soil	MDVPTRSSRKANWRAWGAVLLGLASVAAVPAAIAYTHYEDVDLIQAGWAIAPGIVLGLLALALARRARRRTERTIGRVGGVRVTRLARFLGALGIYVSLAAAASIGVYELLNRLSA*
Ga0062589_1006277422	3300004156	Soil	MASPTRSSSQANVRAWVAVVVGLLSVAAVPAAIAYAHYRDLELLDAAWAAVPAFVLGVVSLMFARRARRRTERTIGRVGGRGVTRVGRLLGALGIYLALAAALSVAVYELLNRLSD*
Ga0062589_1016145031	3300004156	Soil	MDVPTRSSRQANWRAWGAVLLGLASVAAVPAAVAYTHYEDVDLIRASWAIVPGIVLGILALVLARRARRRTERTIGRVGGVRLTRLGRFLGALGIYVALAAAGSIAVYELLNHLSG*
Ga0062589_1016464282	3300004156	Soil	LSVATVPLALAYAHYRDFELLDAAWAAVPAFVLGVVSLMFARRAGRRTERTIGRVGGRGVTRVGRLLGALGIYLALAAALSVAVYELLNRLSD*
Ga0062594_1024593801	3300005093	Soil	MAFPTRSNSAANVRAWLAVCFGLLSVATVPAAIAYTHYRDVELLHAGWAAIPAFLLGVVALVLARVARRRTERTIGRVGGRGVTRVGRFLGALGVYLALAAALSVGVYQLLNHLSA*
Ga0066674_105604682	3300005166	Soil	VVGLVSVACVPAGIALTHFRDIDLVKAGWAVIPGLLLGIASLALARGAKRRTERTIGRVGGRGITRLGRLLGVLGIYLALAGALAVGVYHLLNKLSA*
Ga0066683_100781573	3300005172	Soil	MVVPTRSSSDPNARAWGSVVVGLVSVACVPAGIALTHFRDIDLVKAGWAVIPGLLLGIASLALARGAKRRTERTIGRVGGRGITRLGRLLGVLGIYLALAGALAVGVYHLLNKLSA*
Ga0066685_106454321	3300005180	Soil	MEFPTRSSSQSNARAWGSVLVGVLSVTAVPAGIALAHFHDINLLKAGWAAVPALALGVAALILARGARRRTERTIGRIGGRGVTRLGRLLGALGIYLALAAALSVGIYELLNKLSG*
Ga0066676_111857081	3300005186	Soil	IALTHFRDIDLVKAGWAVIPGLLLGIASLALARGAKRRTERTIGRVGGRGITRLGRLLGVLGIYLALAGALAVGVYHLLNKLSA*
Ga0065705_105904421	3300005294	Switchgrass Rhizosphere	VELLHAGWAAIPAFLLGVVALMLARAARRRTERTIGRVGGRGVTRLGRFLGVLGVYLALAAALSVGVYQLLNHLSA*
Ga0070670_1005657551	3300005331	Switchgrass Rhizosphere	MDVPTRSNRQTNWRAWGAVLLGLASVAAVPAAVVYTHYEDVDLVRAGWAIAPGILLGILALVLARRARRRTERTIGRVGGVGLTRLGRFLGALGIYIAVAAAGSIAVYELLNHLSA*
Ga0066388_1015917782	3300005332	Tropical Forest Soil	MVVPTRSSSDPNARAWGAVVVGLLSVACVPAGIALTHYRDVDLVKAGWAVIPGLVLGIVSLALARGARRRTERTIGRVGGRGITRIGRLLGVLGIYLALAGALAVGVYELLNKLSG*
Ga0070688_1009394422	3300005365	Switchgrass Rhizosphere	MDVPTRSNRQTNWRAWGAVLLGLASVAAVPAAVVYTHYEDVDLVRAGWAIAPGILLGILALVLARRARRRTERTIGRVGGVGLTRLGRFLGALGIYIALAAAGSIAVYELLNHLSA*
Ga0068867_1011704271	3300005459	Miscanthus Rhizosphere	MDVPTRSNRQTNWRAWGAVLLGLASVAAVPAAVVYTHYEDVDLIRAGWAIAPGILLGILALVLARRARRRTERTIGRVGGVRLTKLGRFLGALGIYVGLAAAGSIAVYELLNHLSG*
Ga0070707_1005770972	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MAFPTRSSSRPNARAWSSVVVGLLSVACVPGGVAIAHYRDIELLKAGWAVVPGLVLGIVSVMLARRARRRTERTIGRIGGRGLTRAGRLLGALGVYLALAGALSVGVYELLNRLSG*
Ga0073909_102616171	3300005526	Surface Soil	MDVPTRSNRQTNWRAWGAVLLGLASVAAVPAAVVYTHYEDVDLIRAGWAIAPGILLGILALALARHARRRTERTIGRVGGVRLTRLGRFLGALGMYVALAAAGSIAVYELLNHLSA*
Ga0070704_1022586311	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	NARAWSSVVVGLLSVACVPGGVAIAHYRDIELLKAGWAVVPGLVLGIVSVMLARRARRRTERTIGRIGGRGLTRAGRLLGALGVYLALAGALSVGVYELLNRLSG*
Ga0066707_108203571	3300005556	Soil	AVPTRSSSRPNARAWGSVVCGLVSVACVPAGIAVAHYRDIELLKAGWAVVPGLVLGVVSLVLARGARRRTERTIGRVGGQRTTRLGKILGVLGVYLALAGALSVGVYELLNRLSA*
Ga0066670_101982423	3300005560	Soil	GWAAIPAFLLGVAALMLARAARRRTERTIGRVGGRRVTRVGRFLGALGVYLALAAALSVGVYELLNRLSA*
Ga0068852_1022912621	3300005616	Corn Rhizosphere	LHAGWAAIPAFLLGLIAVLLARAARRRSERTIGRVGGRRVTRLGRFLGALGIYLALAAALSVGVYELLNRLSA*
Ga0068859_1011011982	3300005617	Switchgrass Rhizosphere	ASVAAVPAAVVYTHYEDVDLVRAGWAIAPGILLGILALVLARRARRRTERTIGRVGGVGLTRLGRFLGALGIYIAVAAAGSIAVYELLNHLSA*
Ga0066905_1010933762	3300005713	Tropical Forest Soil	VFGVLSVLTVPAAVAATHYRDVELLDAGWAAIPALLLGLVAILFARAARRRTERTIGRVGGRRVTRIGRWLGLLGIYIALAAALSVGVYELLNRLSE*
Ga0068866_101278172	3300005718	Miscanthus Rhizosphere	MAFPTRSNSAANVRAWLAVVFGLLSVATVPAAIAYTHYRDVELLHAGWAAIPAFLLGVVALVLARAARRRTERTIGRVGGRGVTRVGRLLGALGVYLALAAALSVGVYQLLNHLSA*
Ga0066903_1000497452	3300005764	Tropical Forest Soil	MAFPTRSNSRPNARAWLAVAVGVLAVLTVPAAIAVAHYRGISLFHAAWSAIPAFLLGVVAIALSRAARRRTERTIGRVGGRRVTRIGRLLGALGIYLALAAALSLGVYELLNRLSA*
Ga0066903_1025859612	3300005764	Tropical Forest Soil	MDVPTRSSRKANVRAWVAVLFGLASVAAVPGAIAYTHYEDVDLIKAGWAVLPGFVLGLIALALARGARRRSERTIGRVGGRGIMRLGRFLGALGIFIAAAGGIALGVYEILNQLSY*
Ga0066903_1059429161	3300005764	Tropical Forest Soil	PAAIAYTHYYDVKLLKAGWAIVPGLVLGFVAIWLARSARRRTERTIGRVGGARIARFGRFLGALGIYVALAGAISVGVYELLNRLSE*
Ga0066903_1061065922	3300005764	Tropical Forest Soil	MDVPTRSSRQTNVRAWAAVVVGLLSVVAVPAAIAYTHYYDVKLLKAAWAIVPGLVLGLLAIWLGRSARRRTERTIGRVGGQRVTRLGRWLGILGIYISLAAALSVGVYELLNRLSA*
Ga0068870_113889351	3300005840	Miscanthus Rhizosphere	IAYTHYADVELIKAGLAVPVGLVLGVAALSLAKRARRRSERTIGRVGGLRAARLGRVLGGLGVYVALTGALSVGVYELLNRLSG*
Ga0079217_102244892	3300006876	Agricultural Soil	MDVPTRSNRKRNWRAYGAVLLGLVSVAAVPAGIAVAHSTDVELLDAGWSIAPAAVFGVLALWLARRARRRIERTIGRVGGARTARVARGLGALGLFLAAAGGLSLGVYYLLEYLSA*
Ga0066710_1016642262	3300009012	Grasslands Soil	MEFPTRSSSQSNARAWGSVLVGVLSVTAVPAGIALAHYHDINLLNAGWAAVPALALGIASLILARGARRRTERTIGRIGGRGVTRLGRLLGALGIYLALAAALSVGIYELLNKLSG
Ga0099827_113359832	3300009090	Vadose Zone Soil	MAVPTRSSSRPNVRAWGAVLVGLLAVAAVPAGVALTHYRSIELLKAGWAVVPGLALGIASLALARAARRRTERTIGRIGGGRVTRLGRYLGVLGIYLALAAALSVGVYELLNRLSG*
Ga0105245_113996002	3300009098	Miscanthus Rhizosphere	AVAYTHYQDVDLIRASWAIAPGILLGLLALALARRARRRTERTIGRVGGVRLTKLGRFLGALGIYVGLAAAGSIAVYELLNHLSG*
Ga0105242_106787112	3300009176	Miscanthus Rhizosphere	LAVVFGVLSVATVPAAIAYTHYRDVELLHAGWAAIPAFLLGVVALVLARAARRRTERTIGRVGGRGVTRVGRLLGALGVYLALAAALSVGVYQLLNHLSA*
Ga0105242_116355552	3300009176	Miscanthus Rhizosphere	LVVPAAIAATRYRDIELLHAGWAAIPAFLLGLIAVLLARAARRRSERTIGRVGGRRVTRLGRFLGALGIYLALAAALSVGVYELLNRLSA*
Ga0126374_108116012	3300009792	Tropical Forest Soil	AAIPAFVLGVAAVWLARAARRRSERTIGRVGGRRVTRLGRFLGGLGVYVALAAALSVGVYEPLNRLSA*
Ga0126374_116209232	3300009792	Tropical Forest Soil	MDVPTRSSRKANVRAWAAVLFGLASVAAVPAAVAYTHYRDVDLIEAGWGVVPGLVFGLLALALAGGARKRSERTIGRVGGRAIVRIGRFLGALGVFIAVAGGIALGVYEILNQLSY*
Ga0126309_104770131	3300010039	Serpentine Soil	AVPAGIAIASYSDVELIDAGWSIAPAAVLGLLALWLARRARRRIERTIGRIGGARTVRVARLLGGLGLYLAAAAGLALAVYYLLEHLSA*
Ga0126309_110857031	3300010039	Serpentine Soil	LIEAGWAIAPAAILGMLALWLARRARRRSERTIGRVGGVRVTRVGRFLGALGIYIALAGALSLGVYWLLDRLSA*
Ga0126312_100568002	3300010041	Serpentine Soil	VLLGLLAVAAVPAAIGVASYSEVELIEAGWAIAPAAILGMLALWLARRARRRSERTIGRVGGVRVTRVGRFLGALGIYIALAGALSLGVYWLLDRLSA*
Ga0126312_101091552	3300010041	Serpentine Soil	MAVPTRSSSQANVRAWAAVVVGLLSVAIVPAAIAYVHYRDLELLDAGWAAVPGFVLGLVSLVFARRARRRTERTIGRIGGRGLTRAGRLLGALGVYLALAAALSVGVYELLNRLSD*
Ga0126311_100339605	3300010045	Serpentine Soil	VATVPAAIAATHYRDIELLEAGWAAIPAFLLGLAALMLARGARRRTERTIGRVGGRRVTRIGRFLGALGVYVALAAALSVGVYELLDRLSA*
Ga0134062_106276271	3300010337	Grasslands Soil	AGWAAIPAFLLGLAALLLARAARRRTERTIGRVGGRRVTRIGRFLGALGIYLALAAALSVGVYELLDRL*
Ga0126370_115006442	3300010358	Tropical Forest Soil	MGVPTRSSRKANVRAWAAVLFGLASVAAVPGAIAYTHYEDVDLIKAGWAVVPGFLLGLIALVLAGGARKRSERTIGRVGGRGIMRFGRFLGALGIFIAAAGGIALGVYEILNQLSY*
Ga0126379_105075182	3300010366	Tropical Forest Soil	VLAVLTVPAAIAVAHYRGISLFHAAWSAIPAFLLGVVAIALSRAARRRTERTIGRVGGRRVTRIGRLLGALGIYLALAAALSLGVYELLNRLSA*
Ga0105239_118836791	3300010375	Corn Rhizosphere	MDVPTRSSRKANWRAWGAVLLGLASVAAVPAAIAYTHYEDVDLVQAGWAIAPGMVLGLLAIALARRARRRTERTIGRVGGVRLTRFGRFLGALGIYVALAAAGSIGVYELLNRL
Ga0105239_126718091	3300010375	Corn Rhizosphere	LAVCFGLLSVATVPVAIAYTHYRDVELLHAGWAAIPAFLLGVVALVLARAARRRTERTIGRVGGRGVTRVGRFLGALGVYLALAAALSVGVYQLLNH
Ga0124850_10669452	3300010863	Tropical Forest Soil	VLVVPAAIAATHYRDLELLKAGWAAIPAFLLGLVALWLARAARRRSERTIGRVGGRRVTRLGRFLGAVGIYIALAAALSVGVYELLNRLSA*
Ga0138514_1000041752	3300011003	Soil	LVGLLAVAAVPAGVALTHYRDVELLKAGWAVVPGLVLGIASLALARAARRRTERTIGRVGGKGVTRLGRYLGVLGIYLALAAALSVGVYELLNKLSG*
Ga0120152_10595632	3300012011	Permafrost	VACVPAAVAVAHYRGIELLKAGWAVAPGLALGVVSLFLARAARRRTERTIGRVGGRRLTRVGRLLGALGIYLAVAGALSVGVYELLNKLSG*
Ga0137365_104519841	3300012201	Vadose Zone Soil	RSIELLEAGWAVMPGLVLGIASLALARAARRRTERTIGRVGGRGVTRLGRYLGVLGIYLALAAALSVGVYELLNKLSG*
Ga0137374_100320123	3300012204	Vadose Zone Soil	MPAAIALTQYQDVELLDAGWAVAPALVLGVASHALARRARRRTERTIGRVGGRGTTRVGRALGALGIYLALAAALSVGVYELLNQLSA*
Ga0137374_100475864	3300012204	Vadose Zone Soil	VSVVVGLLSVACVPAGVAFVHYRDIELLEAGWTVAPGFVLGIVSLMLARRARRRTERTIGRVGGRRVTRLGRLLGALGIYLALAAALSVGVYELLNYLSD*
Ga0137374_100632752	3300012204	Vadose Zone Soil	LAVPTRSSSQANVRAWGAVVLGLLSVATVPAAVAYAHYRDVELLDAGWAAAPGLVLGVASLVFARRARRRTERTIGRVGGRRVTRVGRLLGALGIYLALAAALSVGVYELLNHLSD*
Ga0137374_101716252	3300012204	Vadose Zone Soil	VLVGLVSVVCVPAAIVAAHYTDVELIDAGWSIAPAAVLGLLALWLARRARRRTERTIGRVGGQRTARLGRFLGGLGLYLAAGGGLALGVYYLLEYLSA*
Ga0137376_109720361	3300012208	Vadose Zone Soil	VACVPSTITVAHYRDIELLKAGWAVVPALVLGVVSVMLARRARRRTERTIGRIGGRGLTRAGRLLGALGVYLALAGALSVGVYELLNRLSG*
Ga0137372_100136356	3300012350	Vadose Zone Soil	VAAVPAGVAYTHYRDIELLRAGWSVPPALVLGVVSLVLARGARRRTERTIGRVGGRGPTRAGRLLGALGVYLAAAGALSVGVYELLNHLSA*
Ga0137372_102241652	3300012350	Vadose Zone Soil	VRAWGSVVCGLLSVATVPAAVALTHYRDIELLDAGWGAPLGLVLGVVSLLLARSARRRTVRTIGRVGGRGVTRLGRLLGALGIYLALAAALSVGVYQLLNHLSA*
Ga0137372_102319491	3300012350	Vadose Zone Soil	RDIELLEAGWTVAPGFVLGIVSLMLARRARRRTERTIGRVGGRRVTRLGRLLGALGIYLALAAALSVGVYELLNYLSD*
Ga0137369_100667912	3300012355	Vadose Zone Soil	MPAAIALTQYQDVELLDAGWAVAPALVLGVASLALARRARRRTERTIGRVGGRGTTRVGRALGALGIYLALAAALSVGVYELLNQLSA*
Ga0137368_100689663	3300012358	Vadose Zone Soil	LAVPTRSSSQANVRAWGAVVLGLLSVATVPAAVAYAHYRDVELLDAGWAAAPGLVLGVASLVFARRARRRTERTIGRVGGRRVTRVGRLLGALGIYLALAAALSVGVYELLNHLSD
Ga0137368_105555491	3300012358	Vadose Zone Soil	VLGLLSVATMPAAIALTQYRDVELLDAGWAVAPALVLGVASLALARRARRRTERTIGRVGGRGTTRVGRALGVLGIYLALAAALSVGVYELLNQLSA*
Ga0150984_1222071903	3300012469	Avena Fatua Rhizosphere	MDVPTRSSRKANWRAWGAVLLGLASVAAVPAAIAYTHYEDVELIRAAWAIAPGILLGLLALALARRARRRTERTIGRVGGVRVTRLGRFLGALGIYVALAAAVSIGVYELLNRLSE*
Ga0137373_104446711	3300012532	Vadose Zone Soil	MDVPTRSNRARNWRAAFAVLVGLVSVLCVPAAIVAAHYTDVELIDAGWSIAPAAVLGLLALWLARRARRRTERTIGRVGGQRTARLGRFLGGLGLYLAAGGGLALGVYYLLEYLSA*
Ga0157297_101797802	3300012914	Soil	RMASPTRSSSQANVRAWVAVVVGLLSVAAVPAAIAYAHYRDLELLDAAWAAVPAFVLGVVSLMFARRARRRTERTIGRVGGRGVTRVGRLLGALGIYLALAAALSVAVYELLNRLSD*
Ga0164299_112829692	3300012958	Soil	MAFPTRSNSRLNTRAWLAVVVGLLSAATVPAAIAVTHYRDIELLHAGWAAIPAFLLGVAALSLARGASRRTERTIGRVGGRRDTRLGRFLGEVDYAYLSFIDPDVRGGQVQRIGA
Ga0164299_115787751	3300012958	Soil	MDVPTRSNRQTNWRAWGAVLLGLASVAAVPAAVVYTHYEDVDLIRAGWAIAPGILLGILALALARRARRRTERTIGRVGGVRLTRLGRFLGALGMYVALAAAGSIAVYAL
Ga0126369_126501392	3300012971	Tropical Forest Soil	VAVLFGLASVAAVPGAIAYTHYEDVDLIKAGWAVLPGFVLGLIALALARGARRRSERTIGRVGGRGIVRLGRFLGALGIFIAAAGGIALGVYEILNQLSY*
Ga0134087_100362392	3300012977	Grasslands Soil	VPAAVAATHYRDIELLRAGWAAIPAFLLGVAALMLARAARRRTERTIGRVGGRRVTRVGRFLGALGVYLALAAALSVGVYELLNRLSA*
Ga0164308_117802932	3300012985	Soil	QTNWRAWGAVLLGLASVAAVPAAVVYTHYEDVDLIRAGWAIAPGIVLGVLALVLARRARRRTERTIGRVGGVRLTRLGRFLGALGMYVALAAAGSIAVYELLNHLSA*
Ga0164307_105173532	3300012987	Soil	MDVPTRSSRQTNWRAWCAVLLGLASVAAVPAAVAYTHYKDVDLIRASWAIAPGILLGLLAMALARRARRRTERTIGRVGGVRLTKLGRFLGALGIYVGLAAAGSIAVYELLNHLS
Ga0164305_110260441	3300012989	Soil	PRLMAFPTRSNSRLNTRAWLAVVVGLLSAATVPAAIAVTHYRDIELLHAGWAAIPAFLLGVAALSLARGASRRTERTIGRVGGRRVTRLGRFLGALGVYLALAAALSVGVYELLNRLSA*
Ga0164305_110564181	3300012989	Soil	ATVPAAIALTHYRDIELLHAGWAAIPAFLLGLVALMLARAARRRTERTIGRVGGRGVTRLGRFLGALGVYLALAAALSVSVYELLNHLSA*
Ga0163162_103208911	3300013306	Switchgrass Rhizosphere	FLPRLMAFPTRSNSRPNTRAWLAVIVGLLSVATVPAAIAVTHYRDIELLHAAWAAIPAFLLGLIAILLARAARRRTERTIGRVGGRRVTRLGRFLGALGIYLALAAALSVGVYELLNRLSA*
Ga0163162_120039012	3300013306	Switchgrass Rhizosphere	MDVPTRSNRQTNWRAWGAVLLGLASVAAVPAAVAYTHYQDVDLIRASWAIAPGILLGILALVLARRARRRTERTIGRVGGVRLTRFGRFLGALGIYVALAAAGSIGVYELLNRLSA*
Ga0120154_10835942	3300013501	Permafrost	VACVPAAVAVAHYRGIELLKAGWAVAPGLALGVVSLFLARAARRRTERTIGRVVGRRLTRVGRLLGALGIYLAVAGALSVGVYELLNKLSG*
Ga0120179_11075421	3300013763	Permafrost	HYAKLELLKAEYAIPFGFILGVAALSLAKRARQRSERTIGRVGGARAARLGRILGALGVYVALTAALSVGAYELLNRLSG*
Ga0120149_12254981	3300014058	Permafrost	VACVPAAVAVAHYRGIELLKAGWAVAPGLALGVVSLFLARAARRRTERTIGRIGGRRLTRVGRLLGALGIYLAVAGALSVGVYELLNKLSG*
Ga0163163_129477241	3300014325	Switchgrass Rhizosphere	HYRDIELLQAGWAAIPAFLLGLAALLLARGAGRRTERTIGRVGGRRVTRLGRFLGALGVYIALAAALSVGVYELLNRLSA*
Ga0157380_129682742	3300014326	Switchgrass Rhizosphere	LAVCFGLLSVATVPAAIAYTHYRDVELLHAGWAAIPAFLLGVVALVLARAAGRRTERTIGRVGGRGVTRVGRLLGALGVYLALAAALSVGVYQ
Ga0120171_10240562	3300014827	Permafrost	MAVPTRSSSSPNARAWGSVVVGLLSVACVPAAVAVAHYRGIELLKAGGAVAPGLALGVVSLFLARAARRRSERTIGRIGGRRLTRVGRLLGALGIYLALAGALSVGVYELLNKLSG*
Ga0157379_109369571	3300014968	Switchgrass Rhizosphere	MDVPTRSNRQTNWRAWGAVLLGLASVAAVPAAVVYTHYEDVDLIRAGWAIAPGILLGIFALVLARRARRRTERTIGRVGGVGLTRLGRFLGALGIYVAVAAAGSIAVYELLNHLSA*
Ga0132258_101112063	3300015371	Arabidopsis Rhizosphere	MAFPTRSNSRPNTRAWLAVVVGLLSVATVPAAIAVTHYRDIELLHAGWAAIPAFLLGVAALALARGASRRTERTIGRVGGRRVTRLGRFLGALGVYLALAAALSVGVYELLNRLSA*
Ga0132258_117457792	3300015371	Arabidopsis Rhizosphere	VRAWAAVVFGLASVAAVPVGIVLTRRSDLDLIHAGWAVAPGLLLGLLALALARGARRRSQRTLGRVGSVGVTRLGRFLGALGVYIALAGAVALGVYEILNQLSY*
Ga0132258_122877073	3300015371	Arabidopsis Rhizosphere	LRMAVPTRSSRKANVRAWVAVVFGLASVAAVPAAVVYTRREDVDLIQAGWAVPAAALLGLGALLLARAARRRTERTIGRVGGVGTARLGRLLGVLGIYVALVGAVALGVYEILNQLSY*
Ga0132258_123406773	3300015371	Arabidopsis Rhizosphere	RMDVPTRSSRKANWRAWGAVLLGLASVAAVPAAIAYTHYEDVDLVRAGWAIAPGMVLGLLAIALARRARRRTERTIGRVGGVRLTRFGRFLGALGIYVALAAAGSIGVYELLNRLSA*
Ga0132256_1020948111	3300015372	Arabidopsis Rhizosphere	MAVPTRSSRKANVRAWVAVVFGLASVAAVPAAVVYTRREDVDLIQAGWAVPAAALLGLGALLLARAARRRTQRTIGRVGGVGATRLGRLLGVLGIYVALVGAVALGVYEILNQLS
Ga0132255_1039516561	3300015374	Arabidopsis Rhizosphere	SSRKANVRAWVAVVFGLASVAAVPAAVVYTRREDVDLIQAGWAVPAAALLGLGALLLARAARRRTERTIGRVGGVGTARLGRLLGVLGIYVALVGAVALGVYEILNQLSY*
Ga0132255_1051188571	3300015374	Arabidopsis Rhizosphere	MDVPTRSSRKANWRAWGAVLLGLASVAAVPAAIAYTHYEDVDLIQAGWAIVPGIVLGILALVLARRARRRTQRTIGRVGGVRITKLGRFLGALGIYVALAAAGSIAVYELL
Ga0184619_102667392	3300018061	Groundwater Sediment	MAFPTRSSSRQNARAWVSVVVGLLSVATVPAAVAYTHYRDIELLKAGWAVLPAFVLGFAALWLARRARRRTERTIGRVGGRRVTKAGHLLGALGVYLAFAGALSVGFYQLLNHLSA
Ga0184618_105046212	3300018071	Groundwater Sediment	AVPAGVALTRFRNIELLEAGWAVVPGLVLGIASVVLARAARRRTERTIGRVGGRRVTRLGRYLGALGIYLALAAALSVGVYELLNKLSG
Ga0184635_100768222	3300018072	Groundwater Sediment	MAFPTRSNSRPNARAWAAVFVGLLSVATVPAAIAFTHYRDVELLHAGWAAIPAFLLGVVALILARAARRRTERTISRVGGRGVTRLGRFLGVLGVYLALAAALSVGVYQLLNHLSA
Ga0184609_102971481	3300018076	Groundwater Sediment	SRPNARAWLAVLIGLLAVAAVPAGVALTHYRSIELLEAGWAVVPGLVLGIASLALARAARRRTERTIGRVGGRGVTRLGRFLGALGVYLALAAALSVGVYELLNKLSG
Ga0066667_102144091	3300018433	Grasslands Soil	GLLAVATVPAAVAAAHYRDIELLRAGWAAIPAFLLGVAALMLARAARRRTERTIGRVGGRRVTRVGRFLGALGVYLALAAALSVGVYELLNRLSA
Ga0193719_102826522	3300021344	Soil	MAVPTRSSSRPNARAWVSVVFGLLSVACVPAGVAVARYRDIELLKAGWAVVPGLVLGVVSLVLARAARRRTDRTIGRVGGRRATRAGKLLGALGVYLALAGALSVGVYELLNKLSA
Ga0126371_120394162	3300021560	Tropical Forest Soil	MDVPTRSSRKANVRAWAAVVFGLASVAAVPGAIAYTHYEDVDLIKAGWAVPPGFLLGLIALALAGRARKRSERTIGRVGGRGVMRVGRVLGALGVFIAAAGGIALGVYEILNQLSY
Ga0222622_106542482	3300022756	Groundwater Sediment	MDVPTRSSRKANWRAWGAVLLGLASVAAVPAAIAYTHYEDVDLVRAGWAIAPGMVLGLLAIALARRARRRTERTIGRVGGVRLTRFGRFLGALGIYVALAAAGSIGVYELLNRLSA
Ga0207642_100684612	3300025899	Miscanthus Rhizosphere	MAFPTRSNSAANVRAWLAVVFGLLSVATVPAAIAYTHYRDVELLHAGWAAIPAFLHGVVALVLARAARRRTERTIGRVGGRGVTRVGRLLGALGVYLALAAALSVGVYQLLNHLSA
Ga0207646_114269991	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MDVPTRSSRQANGRAWGAVVVGLTSVAAVPAAVAYTHYRNVELVKAAWAVAPGFLLGVLALVFARGARRRTQRTIGRVGGRGLTRLGRFLGGLGVY
Ga0207650_104752042	3300025925	Switchgrass Rhizosphere	MDVPTRSNRQTNWRAWGAVLLGLASVAAVPAAVVYTHYEDVDLVRAGWAIAPGILLGILALVLARRARRRTERTIGRVGGVGLTRLGRFLGALGIYIAVAAAGSIAVYELLNHLSA
Ga0207687_118770081	3300025927	Miscanthus Rhizosphere	DLIRAGWAIAPGILLGILALVLARRARRRTERTIGRVGGVGLTRLGRFLGALGIYVAVAAAGSIAVYELLNHLSA
Ga0207676_125952832	3300026095	Switchgrass Rhizosphere	MDVPTRSNRQTNWRAWGAVLLGLASVAAVPAAVVYTHYEDVDLIRAGWAIAPGILLGILALVLARRARRRTERTIGRVGGVGLTRLGRFLGALGIYIAVAAAGSIAVYELLNHLSA
Ga0209266_11949311	3300026327	Soil	IDLVKAGWAVIPGLLLGIASLALARGAKRRTERTIGRVGGRGITRLGRLLGVLGIYLALAGALAVGVYHLLNKLSA
Ga0209811_100976211	3300027821	Surface Soil	VTVGLLSVATVPAAIAYTHYRDVELLHAGWAAIPAFLLGAVALLLARAARRRTERTIGRVGGRGVTRVGRFLGALGVYLALAAALSVGVYELLNHLSA
Ga0268265_111863811	3300028380	Switchgrass Rhizosphere	MDVPTRSSRKANWRAWGAVLLGLASVAAVPAAVVYTHYEDVDLIRAGWAIAPGILLGILALVLARRARRRTERTIGRVGGVGLTRLGRFLGALGIYVALAAAGSIAVYELLNHLSA
Ga0307313_102139501	3300028715	Soil	MAVPTRSSSHPNARAWGAVLVGLLAVAAVPAGVALTHYRDIELLKAGWAVVPGLVLGIASLALARAARRRTERTIGRVGGRGVTRLGRYLGVLGIYLALAAALSVGVYELLNKLSG
Ga0307298_102103212	3300028717	Soil	RRMDVPTRSSRKANWRAWGAVLLGLASVAAVPAAIAYTHYEDVDLVRAGWAIAPGMVLGLLAIALARRARRRTERTIGRVGGVRLTRFGRFLGALGIYVALAAAGSIGVYELLNRLSA
Ga0307307_100338293	3300028718	Soil	PRRMAVPTRSSSHPNARAWGAVLVGLLAVAAVPAGVALTHYRDIELLKAGWAVVPGLVLGIASLALARAARRRTERTIGRVGGRGVTRLGRYLGVLGIYLALAAALSVGVYELLNKLSG
Ga0307282_101869691	3300028784	Soil	AGVALTHYRDIELLKAGWAVVPGLVLGIASLALARAARRRTERTIGRVGGRGVTRLGRYLGVLGIYLALAAALSVGVYELLNKLSG
Ga0307323_103035491	3300028787	Soil	MDVPTRSSRKANWRAWGAVLLGLASVAAVPAAIAYTHYEDVDLVRAGWAIAPGMVLGLLAIALARRARRRTERTIGRVGGVRLTRFGRFLGALGIYVALAAAGSI
Ga0307302_104981991	3300028814	Soil	DLVRAGWAIAPGMVLGLLAIVLARRARRRTERTIGRVGGVCLTRFGRFLGALGIYVALAAAGSIGVYELLNRLSA
Ga0307312_102131213	3300028828	Soil	RFPPRRMAVPTRSSSHPNARAWGAVLVGLLAVAAVPAGVALTHYRSIELLEAGWAVVPGLGLGIASLALARAARRRTERTIGRVGGGRVTRLGRYLGALGIYLALAAALSVGVYELLNKLSG
Ga0307278_103965661	3300028878	Soil	VVGLLAVVAVPAGVALTHYRDIELLKAGWAVAPGLALGIASLALARAARRRTERTIGRVGGGRVTRLGRYLGALGIYLALAAALSVGVYE
Ga0307498_100033383	3300031170	Soil	VRAWLAVVVGLLSVATVPAAIAFTHYRDVELRHAGWAAIPAFLLGVAALMLARAARRRTERTIGRVGGRGVTRLGRFLGVLGVYLALAAALSVGVYQLLNHLSA
Ga0307495_101299421	3300031199	Soil	NVRAWLAVVVGLLSVATVPAAIAFTHYRDVELRHAGWAAIPAFLLGVAALMLARAARRRTERTIGRVGGRGVTRLGRFLGVLGVYLALAAALSVGVYQLLNHLSA
Ga0307497_106866912	3300031226	Soil	MAFPTRSNSSANVRAWLAVVVGLLSVATVPAAIAFTHYRDVELLHAGWAAIPAFLLGVAALMLARAARRRTERTIGRVGGRGVTRLGRFLGVVGVYLALAAALSVGVYQLLNHLSA
Ga0318516_102309962	3300031543	Soil	MAFPTRSNSRPNARAWLAVGVGVLAVVVVPAAIAVAHYRGLSLLHAAWAAVPAFLLTIGRVGGRRVTRIGRLLGALGIYLALAAALSVGVYELLNRLSA
Ga0318534_103805022	3300031544	Soil	MDVPTRSSRKANARAWAAVLFGLASVAAVPGAIAYTHYRNVDLIKAGWAVVPGFVLGLIALALARGARKRSERTIGRVGGRAIMRLGSFLGALGVFIAAAGGIALGVYEILNQLSY
Ga0308175_1024570032	3300031938	Soil	IELLQAGWAAMPAFLLGLIAILLARAARRRTERTIGRVGGRRVTRLGRFLGALGIYLALAAALSIGVYELLNRLSA
Ga0318562_107719071	3300032008	Soil	MDVPTRSSRKANARAWAAVLFGLASVAAVPGAIAYTHYRNIDLIKAGWAVAPGFLLGVIALALAGGARKRSGRTIGRVGGRGIVRFARFLCALGIFIAAAGGIALGVYEILNQLSY
Ga0318575_105929411	3300032055	Soil	RMDVPTRSSRKANARAWAAVLFGLASVAAVPGAIAYTHYRNVDLIKAGWAVVPGFVLGLIALALARGARKRSERTIGRVGGRAIMRLGSFLGALGVFIAAAGGIALGVYEILNQLSY
Ga0318514_105582732	3300032066	Soil	PTRSSRKANARAWAAVLFGLASVAAVPGAIAYTHYRNVDLIKAGWAVVPGFVLGLIALALARGARKRSERTIGRVGGRAIMRLGSFLGALGVFIAAAGGIALGVYEILNQLSY

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F061598

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences