Metagenome / Metatranscriptome Family F061594

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F061594
Family Type	Metagenome / Metatranscriptome
Number of Sequences	131
Average Sequence Length	44 residues
Representative Sequence	RLAGLKAVEPKLQAFYDSLDAKQKKAFDTGGRIGGIFDWWGKK
Number of Associated Samples	98
Number of Associated Scaffolds	131

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	7.63 %
% of genes near scaffold ends (potentially truncated)	80.92 %
% of genes from short scaffolds (< 2000 bps)	83.97 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.39

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (96.947 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (32.061 % of family members)
Environment Ontology (ENVO)	Unclassified (46.565 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (55.725 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 45.07% β-sheet: 0.00% Coil/Unstructured: 54.93%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.39
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.39
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 131 Family Scaffolds
PF14494	DUF4436	6.11
PF04226	Transgly_assoc	3.82
PF13396	PLDc_N	2.29
PF09361	Phasin_2	2.29
PF07813	LTXXQ	2.29
PF06826	Asp-Al_Ex	2.29
PF05036	SPOR	1.53
PF13628	DUF4142	1.53
PF13185	GAF_2	1.53
PF02656	DUF202	1.53
PF00027	cNMP_binding	1.53
PF01738	DLH	1.53
PF05532	CsbD	1.53
PF02668	TauD	0.76
PF17200	sCache_2	0.76
PF03069	FmdA_AmdA	0.76
PF06035	Peptidase_C93	0.76
PF00528	BPD_transp_1	0.76
PF01594	AI-2E_transport	0.76
PF02776	TPP_enzyme_N	0.76
PF00239	Resolvase	0.76
PF09925	DUF2157	0.76
PF04828	GFA	0.76
PF02735	Ku	0.76
PF07687	M20_dimer	0.76
PF07883	Cupin_2	0.76
PF07690	MFS_1	0.76
PF01425	Amidase	0.76
PF02586	SRAP	0.76
PF02371	Transposase_20	0.76
PF07045	DUF1330	0.76
PF01522	Polysacc_deac_1	0.76
PF13493	DUF4118	0.76
PF04343	DUF488	0.76
PF01734	Patatin	0.76
PF13426	PAS_9	0.76
PF14833	NAD_binding_11	0.76
PF09694	Gcw_chp	0.76
PF04392	ABC_sub_bind	0.76
PF00496	SBP_bac_5	0.76
PF00582	Usp	0.76
PF00072	Response_reg	0.76
PF03401	TctC	0.76

COG ID	Name	Functional Category	% Frequency in 131 Family Scaffolds
COG3678	Periplasmic chaperone Spy, Spy/CpxP family	Posttranslational modification, protein turnover, chaperones [O]	9.16
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	3.82
COG2985	Uncharacterized membrane protein YbjL, putative transporter	General function prediction only [R]	2.29
COG2149	Uncharacterized membrane protein YidH, DUF202 family	Function unknown [S]	1.53
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	1.53
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.76
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	0.76
COG4667	Predicted phospholipase, patatin/cPLA2 family	Lipid transport and metabolism [I]	0.76
COG3791	Uncharacterized conserved protein	Function unknown [S]	0.76
COG3672	Predicted transglutaminase-like protein	Posttranslational modification, protein turnover, chaperones [O]	0.76
COG3621	Patatin-like phospholipase/acyl hydrolase, includes sporulation protein CotR	General function prediction only [R]	0.76
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.76
COG3189	Uncharacterized conserved protein YeaO, DUF488 family	Function unknown [S]	0.76
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.76
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.76
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.76
COG2421	Acetamidase/formamidase	Energy production and conversion [C]	0.76
COG2175	Taurine dioxygenase, alpha-ketoglutarate-dependent	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.76
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	0.76
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.76
COG1752	Predicted acylesterase/phospholipase RssA, containd patatin domain	General function prediction only [R]	0.76
COG1273	Non-homologous end joining protein Ku, dsDNA break repair	Replication, recombination and repair [L]	0.76
COG0726	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	Cell wall/membrane/envelope biogenesis [M]	0.76
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	0.76

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	96.95 %
Unclassified	root	N/A	3.05 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	96.95 %
Unclassified	root	N/A	3.05 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	96.95 %
Unclassified	root	N/A	3.05 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	83.97 %
Unclassified	root	N/A	3.05 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	75.57 %
Unclassified	root	N/A	3.05 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.76 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	68.70 %
Unclassified	root	N/A	3.05 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.76 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.76 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	51.91 %
Roseiarcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae	4.58 %
Unclassified	root	N/A	3.05 %
Burkholderiales genera incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis	0.76 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.76 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	0.76 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	48.85 %
Roseiarcus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus	4.58 %
Unclassified	root	N/A	3.05 %
Rivibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rivibacter	0.76 %
Rhodovulum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum	0.76 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.76 %

Name	Rank	Taxonomy	Distribution
Roseiarcus fermentans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	4.58 %
Unclassified	root	N/A	3.05 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	2.29 %
Rivibacter subsaxonicus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rivibacter → Rivibacter subsaxonicus	0.76 %
Bradyrhizobium icense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium icense	0.76 %
unclassified Rhodovulum	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum → unclassified Rhodovulum	0.76 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.76 %

Name	Rank	Taxonomy	Distribution
Roseiarcus fermentans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	4.58 %
Unclassified	root	N/A	3.05 %
Bradyrhizobium sp. 1(2017)	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 1(2017)	1.53 %
Rhodovulum sp. PH10	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum → unclassified Rhodovulum → Rhodovulum sp. PH10	0.76 %
Bradyrhizobium sp. URHD0069	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069	0.76 %
Rivibacter subsaxonicus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rivibacter → Rivibacter subsaxonicus	0.76 %
Bradyrhizobium icense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium icense	0.76 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.76 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000793\|AF_2010_repII_A001DRAFT_10003478	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3581	Open in IMG/M
3300001305\|C688J14111_10005642	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3459	Open in IMG/M
3300002245\|JGIcombinedJ26739_101105771	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	680	Open in IMG/M
3300004463\|Ga0063356_104880170	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	576	Open in IMG/M
3300005353\|Ga0070669_101535170	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	579	Open in IMG/M
3300005466\|Ga0070685_10025003	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3286	Open in IMG/M
3300005536\|Ga0070697_101633815	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	576	Open in IMG/M
3300005614\|Ga0068856_102400494	Not Available	535	Open in IMG/M
3300005764\|Ga0066903_100028382	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum → unclassified Rhodovulum → Rhodovulum sp. PH10	6244	Open in IMG/M
3300005764\|Ga0066903_104987636	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	704	Open in IMG/M
3300005843\|Ga0068860_101526717	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	690	Open in IMG/M
3300005921\|Ga0070766_10757951	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	659	Open in IMG/M
3300006032\|Ga0066696_10161798	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1404	Open in IMG/M
3300006059\|Ga0075017_100767427	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	744	Open in IMG/M
3300006059\|Ga0075017_101412428	All Organisms → cellular organisms → Bacteria	547	Open in IMG/M
3300006086\|Ga0075019_10408577	All Organisms → cellular organisms → Bacteria	832	Open in IMG/M
3300006893\|Ga0073928_10078918	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2825	Open in IMG/M
3300006954\|Ga0079219_10455693	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	875	Open in IMG/M
3300009176\|Ga0105242_10375581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1320	Open in IMG/M
3300009545\|Ga0105237_11832346	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	614	Open in IMG/M
3300010162\|Ga0131853_10986679	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	651	Open in IMG/M
3300010358\|Ga0126370_10245513	All Organisms → cellular organisms → Bacteria → Proteobacteria	1385	Open in IMG/M
3300010358\|Ga0126370_11213894	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	702	Open in IMG/M
3300010376\|Ga0126381_100110166	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3538	Open in IMG/M
3300010376\|Ga0126381_104032540	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	571	Open in IMG/M
3300010379\|Ga0136449_104368045	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	522	Open in IMG/M
3300010398\|Ga0126383_10676440	All Organisms → cellular organisms → Bacteria → Proteobacteria	1109	Open in IMG/M
3300012154\|Ga0153953_1058922	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	708	Open in IMG/M
3300012181\|Ga0153922_1068308	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	793	Open in IMG/M
3300012202\|Ga0137363_10853658	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 1(2017)	773	Open in IMG/M
3300012948\|Ga0126375_11563312	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	566	Open in IMG/M
3300012971\|Ga0126369_11554300	All Organisms → cellular organisms → Bacteria → Proteobacteria	751	Open in IMG/M
3300012971\|Ga0126369_12911185	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	560	Open in IMG/M
3300013296\|Ga0157374_10547330	All Organisms → cellular organisms → Bacteria	1165	Open in IMG/M
3300015372\|Ga0132256_103226592	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	548	Open in IMG/M
3300016270\|Ga0182036_10203124	All Organisms → cellular organisms → Bacteria	1454	Open in IMG/M
3300016294\|Ga0182041_11665734	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	590	Open in IMG/M
3300016319\|Ga0182033_10083692	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2293	Open in IMG/M
3300016319\|Ga0182033_10967096	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	756	Open in IMG/M
3300016319\|Ga0182033_11749127	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	564	Open in IMG/M
3300016341\|Ga0182035_10237890	All Organisms → cellular organisms → Bacteria	1463	Open in IMG/M
3300016341\|Ga0182035_10251950	All Organisms → cellular organisms → Bacteria	1426	Open in IMG/M
3300016371\|Ga0182034_10144170	All Organisms → cellular organisms → Bacteria → Proteobacteria	1780	Open in IMG/M
3300016387\|Ga0182040_10563483	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	918	Open in IMG/M
3300016387\|Ga0182040_10840631	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	758	Open in IMG/M
3300016387\|Ga0182040_11182199	All Organisms → cellular organisms → Bacteria	643	Open in IMG/M
3300016387\|Ga0182040_11198433	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	639	Open in IMG/M
3300016404\|Ga0182037_10133231	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1847	Open in IMG/M
3300016404\|Ga0182037_10270120	All Organisms → cellular organisms → Bacteria → Proteobacteria	1354	Open in IMG/M
3300016404\|Ga0182037_11770644	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	551	Open in IMG/M
3300016422\|Ga0182039_10728275	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	876	Open in IMG/M
3300016445\|Ga0182038_12148633	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	506	Open in IMG/M
3300017970\|Ga0187783_10774888	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	692	Open in IMG/M
3300018060\|Ga0187765_10569437	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	727	Open in IMG/M
3300020579\|Ga0210407_10855716	Not Available	699	Open in IMG/M
3300020581\|Ga0210399_10072098	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2798	Open in IMG/M
3300020598\|Ga0180218_1116614	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rivibacter → Rivibacter subsaxonicus	519	Open in IMG/M
3300021168\|Ga0210406_10461929	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1009	Open in IMG/M
3300021168\|Ga0210406_11339292	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	514	Open in IMG/M
3300021168\|Ga0210406_11387463	Not Available	502	Open in IMG/M
3300021171\|Ga0210405_10378561	All Organisms → cellular organisms → Bacteria → Proteobacteria	1115	Open in IMG/M
3300021171\|Ga0210405_10512941	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	939	Open in IMG/M
3300021180\|Ga0210396_10214979	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1714	Open in IMG/M
3300021477\|Ga0210398_10469701	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	1025	Open in IMG/M
3300022557\|Ga0212123_10082668	Not Available	2702	Open in IMG/M
3300022717\|Ga0242661_1015782	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1160	Open in IMG/M
3300022724\|Ga0242665_10034482	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1265	Open in IMG/M
3300022731\|Ga0224563_1020953	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	579	Open in IMG/M
3300025922\|Ga0207646_11360876	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	618	Open in IMG/M
3300025942\|Ga0207689_11523584	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	558	Open in IMG/M
3300026358\|Ga0257166_1005592	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 1(2017)	1436	Open in IMG/M
3300026497\|Ga0257164_1008001	All Organisms → cellular organisms → Bacteria	1285	Open in IMG/M
3300026817\|Ga0207775_112778	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	643	Open in IMG/M
3300026862\|Ga0207724_1004086	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1436	Open in IMG/M
3300027696\|Ga0208696_1171068	All Organisms → cellular organisms → Bacteria	697	Open in IMG/M
3300030494\|Ga0310037_10013371	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3980	Open in IMG/M
3300031231\|Ga0170824_114545984	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2034	Open in IMG/M
3300031231\|Ga0170824_116579592	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1430	Open in IMG/M
3300031446\|Ga0170820_11909747	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	520	Open in IMG/M
3300031545\|Ga0318541_10395736	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	772	Open in IMG/M
3300031546\|Ga0318538_10495100	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	662	Open in IMG/M
3300031561\|Ga0318528_10717143	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	535	Open in IMG/M
3300031564\|Ga0318573_10481558	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	668	Open in IMG/M
3300031573\|Ga0310915_10039400	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3002	Open in IMG/M
3300031573\|Ga0310915_10569597	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	803	Open in IMG/M
3300031573\|Ga0310915_10794482	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	666	Open in IMG/M
3300031668\|Ga0318542_10595348	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	577	Open in IMG/M
3300031679\|Ga0318561_10317231	All Organisms → cellular organisms → Bacteria	853	Open in IMG/M
3300031680\|Ga0318574_10649863	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	618	Open in IMG/M
3300031724\|Ga0318500_10743647	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	501	Open in IMG/M
3300031771\|Ga0318546_10007426	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5602	Open in IMG/M
3300031771\|Ga0318546_11289061	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	513	Open in IMG/M
3300031781\|Ga0318547_10224720	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1127	Open in IMG/M
3300031793\|Ga0318548_10028936	All Organisms → cellular organisms → Bacteria → Proteobacteria	2416	Open in IMG/M
3300031796\|Ga0318576_10424519	All Organisms → cellular organisms → Bacteria	628	Open in IMG/M
3300031819\|Ga0318568_10117236	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069	1607	Open in IMG/M
3300031823\|Ga0307478_10758505	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	813	Open in IMG/M
3300031833\|Ga0310917_10994011	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300031879\|Ga0306919_10041831	All Organisms → cellular organisms → Bacteria	2977	Open in IMG/M
3300031880\|Ga0318544_10368574	All Organisms → cellular organisms → Bacteria → Proteobacteria	558	Open in IMG/M
3300031890\|Ga0306925_11084980	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	810	Open in IMG/M
3300031890\|Ga0306925_11806819	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	585	Open in IMG/M
3300031897\|Ga0318520_10355396	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	890	Open in IMG/M
3300031910\|Ga0306923_10242824	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2060	Open in IMG/M
3300031910\|Ga0306923_10507852	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1363	Open in IMG/M
3300031910\|Ga0306923_11302855	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	770	Open in IMG/M
3300031910\|Ga0306923_11567614	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	686	Open in IMG/M
3300031912\|Ga0306921_10148651	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2741	Open in IMG/M
3300031912\|Ga0306921_11098828	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	891	Open in IMG/M
3300031912\|Ga0306921_11556200	All Organisms → cellular organisms → Bacteria → Proteobacteria	720	Open in IMG/M
3300031942\|Ga0310916_11027195	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	687	Open in IMG/M
3300031945\|Ga0310913_10150947	All Organisms → cellular organisms → Bacteria	1606	Open in IMG/M
3300031945\|Ga0310913_10382496	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	998	Open in IMG/M
3300031945\|Ga0310913_10737591	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	696	Open in IMG/M
3300031947\|Ga0310909_11126460	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	637	Open in IMG/M
3300032001\|Ga0306922_10364346	All Organisms → cellular organisms → Bacteria	1550	Open in IMG/M
3300032001\|Ga0306922_11756623	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	612	Open in IMG/M
3300032039\|Ga0318559_10377795	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	660	Open in IMG/M
3300032059\|Ga0318533_11235903	All Organisms → cellular organisms → Bacteria	546	Open in IMG/M
3300032066\|Ga0318514_10498053	All Organisms → cellular organisms → Bacteria → Proteobacteria	648	Open in IMG/M
3300032076\|Ga0306924_10390756	All Organisms → cellular organisms → Bacteria	1593	Open in IMG/M
3300032076\|Ga0306924_11424448	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium icense	738	Open in IMG/M
3300032076\|Ga0306924_11576411	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	693	Open in IMG/M
3300032094\|Ga0318540_10534071	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	566	Open in IMG/M
3300032119\|Ga0316051_1015549	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	666	Open in IMG/M
3300032160\|Ga0311301_10180694	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3688	Open in IMG/M
3300032160\|Ga0311301_11691192	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	762	Open in IMG/M
3300032898\|Ga0335072_10225027	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2189	Open in IMG/M
3300032955\|Ga0335076_10155852	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2198	Open in IMG/M
3300033805\|Ga0314864_0002683	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3203	Open in IMG/M
3300033805\|Ga0314864_0094663	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	724	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	90.84%
Host-Associated	Host-Associated	9.16%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	87.02%
Plants	Host-Associated → Plants	6.87%
Aquatic	Environmental → Aquatic	3.82%
Fungi	Host-Associated → Fungi	1.53%
Arthropoda	Host-Associated → Arthropoda	0.76%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	87.02%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.82%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.05%
Sediment	Environmental → Aquatic → Sediment	2.29%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.53%
Mycelium	Host-Associated → Fungi → Mycelium	1.53%
Digestive System	Host-Associated → Arthropoda → Digestive System	0.76%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	74.81%
Loam	Environmental → Terrestrial → Soil → Loam	7.63%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.58%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.05%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.29%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.29%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.53%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.53%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	1.53%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	0.76%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	60.31%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	12.98%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.58%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.58%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.05%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.29%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.29%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.29%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	1.53%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.53%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	1.53%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.76%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.76%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.76%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	0.76%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	32.06%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	24.43%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.11%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	3.82%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.05%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.05%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.29%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.29%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	1.53%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.53%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	1.53%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.53%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.53%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	1.53%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.76%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.76%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.76%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.76%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.76%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.76%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.76%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	0.76%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.76%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.76%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.76%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.76%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.76%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.76%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.76%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.76%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.76%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300001305	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010162	Labiotermes labralis P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Lab288 P1 (version 2)	Host-Associated	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012154	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ037 MetaG	Host-Associated	Open in IMG/M
3300012181	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ006 MetaG	Host-Associated	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020598	Enriched backyard soil microbial communities from Emeryville, California, USA - eDNA 3rd pass 37_C Kraft BY (version 2)	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300022717	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022724	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022731	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU4	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026358	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-14-B	Environmental	Open in IMG/M
3300026497	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-B	Environmental	Open in IMG/M
3300026817	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 17 (SPAdes)	Environmental	Open in IMG/M
3300026862	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 31 (SPAdes)	Environmental	Open in IMG/M
3300027696	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG (SPAdes)	Environmental	Open in IMG/M
3300030494	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032119	Metatranscriptome of soil microbial communities from Bohemian Forest, Czech Republic ? CSE5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033805	Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_50_10	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A001DRAFT_100034787	3300000793	Forest Soil	PKLGAFYDTLDARQKRAFDNGGRIGGIFNWWGKR*
C688J14111_100056423	3300001305	Soil	MAYAEKIAETRLARLKAIGPKLQAFYDSLDAKQKKAFDTGGRVGGLFAWFGKT*
JGIcombinedJ26739_1011057712	3300002245	Forest Soil	MKAIEPKLQAFYASLDDKQKHAIDAGSRVGGLFGWLNR*
Ga0063356_1048801701	3300004463	Arabidopsis Thaliana Rhizosphere	MAEAKLAGLKAVEPKLQVFYDSLDEKQKKAFDTGGRIGGIFDWWRKK*
Ga0070669_1015351702	3300005353	Switchgrass Rhizosphere	AEAKLAGLKAVEPKLQVFHDSLDEKQKKAFDNGGRIGGIFDWWRKK*
Ga0070685_100250035	3300005466	Switchgrass Rhizosphere	GTGLKAVGPKRQPFCDSPDANQKKAFDTGGRVGGMFDRLGNK*
Ga0070697_1016338152	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MAFAEKMAEIRVAGLKAIEPKLQAFYDTLDARQKRAFDAGGRIGGIFNWWGKT*
Ga0068856_1024004941	3300005614	Corn Rhizosphere	ETRLAGLKAVEPKLQAFYDSLDAKQKKAFDTGGRIGGIFDWWGKK*
Ga0066903_1000283828	3300005764	Tropical Forest Soil	LKEVEPKLQAFYDSLDAKQKKAFDTGGRIGGIFDWWGKK*
Ga0066903_1049876362	3300005764	Tropical Forest Soil	MKTVDPKLQAFYDSLDAKQKTAFDSGGRVGGIFSWLGKQ*
Ga0068860_1015267171	3300005843	Switchgrass Rhizosphere	LKAVEPKLKAFYDSLDEKQKKAFDTGGRIGGIFDWWGKK*
Ga0070766_107579511	3300005921	Soil	QLDGMKAIEPKLQAFYASLDDKQKHAIDGGSRVGGLFGWLNR*
Ga0066696_101617981	3300006032	Soil	EPKLQAFYDTLDARQKRAFDTGGRIGGIFNWWGKR*
Ga0075017_1007674271	3300006059	Watersheds	LAGLKAVEPKLQAFYDSLDEKQKRAFDTGGRIGGIFDWWRKK*
Ga0075017_1014124281	3300006059	Watersheds	MVFAEKMAEIRLAGLKAIEPKLQAFYDTLDARQKRAFDTGRRNGGIFSWWGKT*
Ga0075019_104085772	3300006086	Watersheds	MAETKLAGLKAVEPKLQAFYDSLDAKQKKAFDTGGRIGGIFDWWRKK*
Ga0073928_100789186	3300006893	Iron-Sulfur Acid Spring	RAEWRAETKLAGLKAVEPKLQAFYDSLDAKQKEAFDTGGRIGGIFDWWGKK*
Ga0079219_104556932	3300006954	Agricultural Soil	MAFAEKMAEIRVAGLKAIEPKLQAFYDTLDARQKRAFDTGGRIGGIFNWWGKT*
Ga0105242_103755813	3300009176	Miscanthus Rhizosphere	TPACARGTGLKAVGPKRQPFCDSPDANQKKAFDTGGRVGGMFDRLGNK*
Ga0105237_118323462	3300009545	Corn Rhizosphere	KAVGPKRQPFCDSPDANQKKAFDTGGRVGGMFDRLGSK*
Ga0131853_109866791	3300010162	Termite Gut	LKAVNPKLQAFYDGLDATQKKAFDTGGRVGGIFGWLRNK*
Ga0126370_102455133	3300010358	Tropical Forest Soil	AERMAEVRLAGLKAIEPKLEAFYNTLDARQKRAFDTGGRIGGIFNWWGKR*
Ga0126370_112138941	3300010358	Tropical Forest Soil	SLKAVEPKLQAFYDSLDAKQKKAFDTGGRIGGIFDWLGKK*
Ga0126381_1001101661	3300010376	Tropical Forest Soil	GLKAVEPKLQAFYDTLDASQKRAFDTGGRIGGIFNWWGKR*
Ga0126381_1040325401	3300010376	Tropical Forest Soil	GRMAFAEKIAETRLAGLKAVNPKLQAFYDGLDATQKKAFDTGGRVGGIFGWLRNK*
Ga0136449_1043680452	3300010379	Peatlands Soil	LKAVEPKLQAFYDSLDAKQKKAFDTGGRIGGIFDWWRKK*
Ga0126383_106764403	3300010398	Tropical Forest Soil	AFAERMADVRLAGLKAIEPKLQAFYDTLDAQQKRAFNTGGRVGGIFNWWGKR*
Ga0153953_10589221	3300012154	Attine Ant Fungus Gardens	LDGMKAIEPKLQAFYASLDDKQKHAFDTGGRVGGLFSWLGR*
Ga0153922_10683081	3300012181	Attine Ant Fungus Gardens	TIEPKFQAFYDSLDAKQKKAFDTGGRVGGIFDWWGKK*
Ga0137363_108536581	3300012202	Vadose Zone Soil	KLAGLKATEPKLKAFYDSLDVKQKKAFDTGGRIGGIFDWWGKK*
Ga0126375_115633121	3300012948	Tropical Forest Soil	LASLKDVAPKLHAFYDSLDARQKKAFDTGGRVGGIFDWWGKK*
Ga0126369_115543002	3300012971	Tropical Forest Soil	KAVEPKLQAFYDSLDAKQKKAFDTGGRIGGIFDWWGKK*
Ga0126369_129111852	3300012971	Tropical Forest Soil	VPKLQAFYDSLDAKQKKAFDTGGRIGGIFDWWGKK*
Ga0157374_105473301	3300013296	Miscanthus Rhizosphere	GLKAVGPKRQPFCDSPDANQKKAFDTGGRVGGMFDRLGNK*
Ga0132256_1032265921	3300015372	Arabidopsis Rhizosphere	MPGRAAFAERMAEVRLAGLKAIEPKLQAFYDTLDAQQKRAFNTGGRVGGIFNLVGQEIMVPRRL*
Ga0182036_102031241	3300016270	Soil	KTAEIRLASLKAVEPRLQAFYDGLDEKQKKAFDTGGRVGGIFDWLGKK
Ga0182041_116657341	3300016294	Soil	AEKMAEIRLAGLKAIEPKLQAFYETLDARQKRAFNTGGRVGGIFNWWGKR
Ga0182033_100836921	3300016319	Soil	KAVEPKLQAFYDSLDAKQKNAFDTGGRIGGIFDWWGKK
Ga0182033_109670961	3300016319	Soil	MAFAEKVAETRHAGLKAVNPKLQAFYDGLDAKQKRAFDTGGRVGGIFDWLRSK
Ga0182033_117491272	3300016319	Soil	RLKAVEPKLQAFYDNLDAKQKKAFDTGGRIGGIFDWWSKK
Ga0182035_102378903	3300016341	Soil	MAFAEKTAEISLASLKAVEPKLQAFYDGLDEKQKKAFDTGGRVGGIFDWLGKK
Ga0182035_102519501	3300016341	Soil	EKTAETKVASLKAVEPKLQAFYDSLDEKQKKAFDTGGRVGGIFDWLRNK
Ga0182034_101441702	3300016371	Soil	MAFAEKMAEIRLAGLKAIEPKLQAFYDTLDSRQKRAFDTGGRIGGIFNWWGKT
Ga0182040_105634831	3300016387	Soil	RKDGAGLKAVEPKLQAFYDNLDAKQKKAFDTGGRIGGIFDWWSKK
Ga0182040_108406311	3300016387	Soil	EPKLQAFYDSLDAKQKKAFDTGGRIGGIFDWWRKK
Ga0182040_111821993	3300016387	Soil	STGRLAFSEKMTQARLDGLKAIEPKPQAFYDGLDDKQKKAFDTGGRVGGFFDWWK
Ga0182040_111984331	3300016387	Soil	KANCTTHLSTTPGRMAFAVKTAEISLASLKAVEPRLQAFYDGLDEKQKKAFDTGGRVGGIFDWLGKK
Ga0182037_101332311	3300016404	Soil	RLAGLKAVEPKLQAFYDSLDAKQKKAFDTGGRIGGIFDWWGKKQ
Ga0182037_102701203	3300016404	Soil	AEVRLAGLKAIEPKLEAFYNTLDARQKRAFDTGGRIGGIFNWWGKR
Ga0182037_117706441	3300016404	Soil	MAETRLAGLKEVEPKLQAFYDTLDAKQKKAFDTGGRIGGIFDWWAKK
Ga0182039_107282752	3300016422	Soil	ETRLAGIKAVDPKLQAFYDSLDAKQKTAFDTGGRVGGMFDWWGKQ
Ga0182038_121486331	3300016445	Soil	RLAGLKAVEPKLQAFYDRLDAKQKRAFDTGGRIGGIFDWWRKK
Ga0187783_107748881	3300017970	Tropical Peatland	AVEPKLQAFYDSLDAKQRKAFDTGGRIGGMFDWWGKK
Ga0187765_105694371	3300018060	Tropical Peatland	EPKLQAFYDSLDAKQKKAFDTGGRIGGMFDWLRRTLLR
Ga0210407_108557162	3300020579	Soil	AGLKAVEPKLQAFYDSLDAKQKKAFDTGGRIGGIFDWWGKK
Ga0210399_100720982	3300020581	Soil	MAEIRLAGLKAIEPKLEAFYDTLDARQKRAFDTGGRIGGIFN
Ga0180218_11166142	3300020598	Soil	VGPKLQAFYDSLDARQKRAFDTGGRVGGIFDWWGKK
Ga0210406_104619291	3300021168	Soil	FAEKMAEIRLAGLKAIEPKLEAFYDTLDARQKRAFDTGGRIGGIFNWWGKT
Ga0210406_113392922	3300021168	Soil	DGMKAIEPKLQAFYASLDDKQKHAIDAGSRVGGLFGWLNR
Ga0210406_113874631	3300021168	Soil	EPKLQAFYDSLDAKQKKAFDTGGRIGGIFDWWGKK
Ga0210405_103785612	3300021171	Soil	TKLAGLKAVEPKLQAFYDSLDAKQKKAFDTGGRIGGIFDWWRKK
Ga0210405_105129412	3300021171	Soil	GMKAIEPKLQAFYASLDDKQKHAIDAGSRVGGLFGWLNR
Ga0210396_102149791	3300021180	Soil	MKAIEPKLQAFYASLDDKQKHAIDAGSRVGGLFGWLNR
Ga0210398_104697012	3300021477	Soil	LAFSEKVTQAQLDGMKAIEPKLQAFYASLDDKQKHAIDGGSRVGGLFGWLNR
Ga0212123_100826681	3300022557	Iron-Sulfur Acid Spring	AETRLAGLKAVEPKLQAFYDGLDAKQKKAFDTGGRIGGIFDWWGKK
Ga0242661_10157821	3300022717	Soil	AVEPRLQAFYDSLDAEQKKAFDTGGRIGGIFDWWGKK
Ga0242665_100344821	3300022724	Soil	EPRLQAFYDSLDAEQKKAFDTGGRIGGIFDWWGKK
Ga0224563_10209532	3300022731	Soil	LKAVEPKLQAFYDSLDAKQKKAFDTGGRIGGIFDWWSKK
Ga0207646_113608761	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MNSPQMMQLTMAETRLAGLKVAEPKLQAFYDGLDAKQKKAFDTGGRIGGIFDWWGKQ
Ga0207689_115235842	3300025942	Miscanthus Rhizosphere	MAFAAKMAETRLAGLKVAEPKLQAFYDGLDAKQKKAFDTGGRIGGIFDWWGRK
Ga0257166_10055922	3300026358	Soil	MAFAAKMAETKLAGLKATEPKLKAFYDSLDVKQKKAFDTGGRIGGIFDWWGKK
Ga0257164_10080011	3300026497	Soil	KATEPKLKAFYDSLDAKQKKAFDTGGRIGGIFDWWGKK
Ga0207775_1127782	3300026817	Tropical Forest Soil	EPKLQAFYDSLDAKQKKAFDMGGRIGGIFDWWGKK
Ga0207724_10040861	3300026862	Tropical Forest Soil	AGLKEVEPKLQAFYDSLDAKQKKAFDTGGRIGGIFDWWGKK
Ga0208696_11710682	3300027696	Peatlands Soil	GLKAVEPKLQAFYDSLDAKQKKAFDSGGRIGGIFDWWRER
Ga0310037_100133711	3300030494	Peatlands Soil	MAETRLAGLKAVEPKLQAFYDSLDAKQKKAFDTGGRIGGIFDWWRKK
Ga0170824_1145459842	3300031231	Forest Soil	MAETKLAGLKAVEPKLQAFYDSLDAKQKKAFDTGGRIGGIFDWWSKK
Ga0170824_1165795922	3300031231	Forest Soil	MVFAEKMAEIRLAGLKAIEPKLQAFYDTLDARQKRAFDTGGHIGGIFNWWGKT
Ga0170820_119097471	3300031446	Forest Soil	FAEKVAEIRLAGLKAIEPKLQAFYDTLDARQKRAFDTGRRNGGIFSWWGKT
Ga0318541_103957362	3300031545	Soil	KEVEPKLQAFYDSLDAKQKKAFDTGGRIGGIFDWWGKK
Ga0318538_104951001	3300031546	Soil	GLKAVEPKLQAFYDSLDAKQKKAFDTGGRIGGIFDWWGKK
Ga0318528_107171431	3300031561	Soil	VEPKLQAFYDSLDAKQKKAFDTGGRIGGIFDWWGKK
Ga0318573_104815582	3300031564	Soil	RMAEIRLAGLKAIEPKLEAFYDTLDARQKRAFDTGGRIGGIFNWWGKR
Ga0310915_100394001	3300031573	Soil	MAFAEKMAEIRLAGLKAIEPKLQAFYDTLDARQKRAFDTGGRIGGIFNWWGKT
Ga0310915_105695972	3300031573	Soil	AAFAEKMAEIRLAGLKAIEPKLQAFYDTLDARQKRAFNTGGRVGGIFNWWGKR
Ga0310915_107944822	3300031573	Soil	EMTAETKLASLKAVEPKLQAFYDSLDEKQKKAFDTGGRVGGIFDWLRNK
Ga0318542_105953482	3300031668	Soil	QAAFAEKMAEIRLAGLKAIEPKLQAFYETLDARQKRAFNTGGRVGGIFNWWGKR
Ga0318561_103172311	3300031679	Soil	ETRLARLKEVEPKLQAFYESLDAKQKKAFDTGGRIGGIFDWWGKK
Ga0318574_106498631	3300031680	Soil	MPGRMAFAEKKAEIRLAGLKAIEPKLQAFYDTLDARQKRAFDTGGRIGGIFNWWGKR
Ga0318500_107436472	3300031724	Soil	LKAVEPKLQAFYDTLDAKQKKAFDTGGRIGGMFDWLRRTLLR
Ga0318546_100074261	3300031771	Soil	AERMAEIRLAGLKAIEPKLEAFYDTLDARQKRAFDTGGRIGGIFNWWGKR
Ga0318546_112890612	3300031771	Soil	LKAVEPKLQAFYDSLDAKQKKAFDTGGRIGGIFDWWGKK
Ga0318547_102247201	3300031781	Soil	RLAGLKAVEPKLQAFYDSLDAKQKKAFDTGGRIGGIFDWWGKK
Ga0318548_100289362	3300031793	Soil	MAFAEKMAEIRLAGLKAIEPKLQAFYDTMDARQKRAFDTGGRIGGIFNWWGKT
Ga0318576_104245191	3300031796	Soil	LAGLKAVEPKLQAFYDGLDPKQKKAFDTGGRIGGIFDWWKK
Ga0318568_101172361	3300031819	Soil	GLKEVEPKLQAFYDSLDAKQKKAFDTGGRIGGIFDWWGKK
Ga0307478_107585051	3300031823	Hardwood Forest Soil	MKAIEPKLQAFYASLDDTQKHAIDAGSRVGGLFGWLNR
Ga0310917_109940112	3300031833	Soil	FYDSLDAKQKRAFDTGGRIGGIFYWWGKKSRAATSP
Ga0306919_100418311	3300031879	Soil	EPKLQAFYESLDAKQKKAFDTGGRIGGIFDWWGKK
Ga0318544_103685741	3300031880	Soil	LKAIEPKLQAFYDTLDARQKRAFDTGGRIGGIFNWWGKT
Ga0306925_110849802	3300031890	Soil	MAFAEKTAEIRLASLKAVEPRLQAFYDGLDEKQKKAFDTGGRVGGIFDWLGKK
Ga0306925_118068191	3300031890	Soil	MAFAEMTAETKLASLKAVEPKLQAFYDSLDEKQKKAFDTGGRVGGIFDWLRNK
Ga0318520_103553962	3300031897	Soil	IRLAGLKAIEPKLQAFYDSLDAKQKKAFDTGGRIGGIFDWWGKK
Ga0306923_102428241	3300031910	Soil	MAFAEKMAEIRLAGLQAIEPKLQAFYDTLDARQKRAFDTGGRIGGIFNWWGKT
Ga0306923_105078521	3300031910	Soil	TRLAGMKAVDPKLQAFYDSLDAKQKTAFDTGGRVGGMFDWWRKQ
Ga0306923_113028553	3300031910	Soil	KAIEPKLQAFYDTLDARQKRAFDTGGRIGGIFNWWGKR
Ga0306923_115676143	3300031910	Soil	FAEKTTDIRLAGLKAVEPKLQAFYDSLDAKQKKAFDTGGRIGGIFDWWGKK
Ga0306921_101486515	3300031912	Soil	MAFAEMTAETKLASLKAVEPKLQAFYDNLDEKQKKAFDTGGRVGGIFDWLRNK
Ga0306921_110988282	3300031912	Soil	KAVDPKLQAFYDSLDAKQKTAFDTGGRVGGMFDWWGKQ
Ga0306921_115562002	3300031912	Soil	IEPKLQAFYDTLDARQKRAFDTGGRIGGIFNWWGKT
Ga0310916_110271951	3300031942	Soil	VEPKLQAFYNTLDAKQKKAFDTGGRIGGIFDWWAKK
Ga0310913_101509471	3300031945	Soil	KLASRKAVEPKLQAFYDSLDEKQKKAFDTGGRVGGIFDWLRNK
Ga0310913_103824962	3300031945	Soil	MAEIRLAGLKAVEPKLQAFYDGLDPKQKKAFDTGGRIGGIFDWWKK
Ga0310913_107375911	3300031945	Soil	LKLMRRAEWRSPKRWRRLKAVEPKLQAFYDNLDAKQKKAFDTGGRIGGIFDWWSKK
Ga0310909_111264603	3300031947	Soil	EKVAEIRLAGVKAIEPKLQAFYDTLDARQKKAFDTGWRIGGIFNWGAKRDKRADRY
Ga0306922_103643463	3300032001	Soil	RPGLPALKAVEPKLQAFYDSLDVKQKKAFDTGGRIGGIFDWWRKK
Ga0306922_117566231	3300032001	Soil	EIRLAGLKAIEPKLQAFYDTLDARQKRAFDTGGRIGGIFNWWGKR
Ga0318559_103777952	3300032039	Soil	RLKEVEPKLQAFYESLDAKQKKAFDTGGRIGGIFDWWGKK
Ga0318533_112359031	3300032059	Soil	TRLAGLKAVEPKLQAFYDSLDAKQKNAFDTGGRVGGIFDWWNKK
Ga0318514_104980531	3300032066	Soil	GLKAIEPKLQAFYDTLDARQKRAFDTGGRIGGIFNWWGKT
Ga0306924_103907562	3300032076	Soil	AVEPKLQAFYDSLDAKQKKAFDTGGRIGGIFDWWGKK
Ga0306924_114244483	3300032076	Soil	GLKAVEPKLQVFYSNLDAKQKKAFDTGGRIGGIFDWWGKK
Ga0306924_115764111	3300032076	Soil	TPGRMAFAEKKAEIRLAGLKAIEPKLQAFYDTLDARQKRAFDTGGRIGGIFNWWGKR
Ga0318540_105340712	3300032094	Soil	LSTMPGQAAFAEKMAEIRLAGLKAIEPKLQAFYDTLDARQKRAFNTGGRVGGIFNWWGKR
Ga0316051_10155492	3300032119	Soil	AVEPKLQAFYDSLDAKQKKAFDTGGRIGGIFDWWSKK
Ga0311301_101806941	3300032160	Peatlands Soil	AGLKAVEPKLQAFYDSLDAKQKKAFDTGGRIGGIFDWWRKK
Ga0311301_116911922	3300032160	Peatlands Soil	AVEPKLQAFYDSLDAKQKKAFDSGGRIGGIFDWWRER
Ga0335072_102250271	3300032898	Soil	QLDGLKAIEPKLQAFYDTLDDKQKKAFDSGGRVGGLFGWLSR
Ga0335076_101558521	3300032955	Soil	MQAQLDGMKAIEPKLQAFYDTLDDKQKKAFDTGGRVGGLFGWLGR
Ga0314864_0002683_1375_1515	3300033805	Peatland	LASEARLDGLKAIEPKLQAFYASLDDKQKKAFDTGGRVGGFFDWFK
Ga0314864_0094663_556_699	3300033805	Peatland	MAFAEKMKEARLDGMRTIELYTSLDDKQKKAFDTGGRVGGFFDWFCK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F061594

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences