Metagenome Family F061404

Overview

Basic Information

• Family ID: F061404
• Family Type: Metagenome
• Number of Sequences: 131
• Average Sequence Length: 41 residues
• Representative Sequence: NKFVWVRKGTNPHGPKRVWVPKTTPIVFDVGVGSRMT
• Number of Associated Samples: 8
• Number of Associated Scaffolds: 131

Quality Assessment

• Transcriptomic Evidence: No
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 0.00 %
• % of genes near scaffold ends (potentially truncated): 4.58 %
• % of genes from short scaffolds (< 2000 bps): 4.58 %
• Associated GOLD sequencing projects: 4
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.31

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (100.000 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave (97.710 % of family members)
• Environment Ontology (ENVO): Unclassified (100.000 % of family members)
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant surface (100.000 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 0.00%
  β-sheet: 15.38%
  Coil/Unstructured: 84.62%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Phylogeny

NCBI Taxonomy

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300005661|Ga0058698_10613326	Not Available	676
3300005661|Ga0058698_10783044	Not Available	597
3300005661|Ga0058698_10825058	Not Available	581
3300030502|Ga0268258_10154403	Not Available	554
3300030692|Ga0268250_10514968	Not Available	631
3300032159|Ga0268251_10567012	Not Available	517

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	100.00%

Class

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	100.00%

Category

Habitat	Taxonomy	Distribution
Phylloplane	Host-Associated → Plants → Phylloplane	97.71%
Phyllosphere	Host-Associated → Plants → Phyllosphere	2.29%

Type

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	97.71%
Phylloplane/Leaf Surface	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface	2.29%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	97.71%
Unclassified	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified	2.29%

Habitat

Habitat	Taxonomy	Distribution
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	97.71%
Agave	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave	2.29%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300005562	Agave microbial communities from Guanajuato, Mexico - As.Ma.e	Host-Associated
3300005661	Agave microbial communities from Guanajuato, Mexico - As.Sf.e	Host-Associated
3300027033	Agave microbial communities from Guanajuato, Mexico - At.P.e (SPAdes)	Host-Associated
3300027761	Agave microbial communities from Guanajuato, Mexico - As.Sf.rz (SPAdes)	Host-Associated
3300030502	Agave microbial communities from Guanajuato, Mexico - As.Sf.rz (v2)	Host-Associated
3300030504	Agave microbial communities from Guanajuato, Mexico - At.P.e (v2)	Host-Associated
3300030692	Agave microbial communities from Guanajuato, Mexico - As.Sf.e (v2)	Host-Associated
3300032159	Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)	Host-Associated

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0058697_102609701	3300005562	Agave	NKFVWVRKGTNPHGPKRVWVPKTTPIVFDVGVGSRMT*
Ga0058697_103401181	3300005562	Agave	TPNLAKNFVWVREGTNPHGPNKMWVPKTTPKVFDVGVGSHMT*
Ga0058697_103411981	3300005562	Agave	FVWVRKGANPHGPNRVWVPKSTPMVFDVGVGSRLT*
Ga0058697_103780061	3300005562	Agave	NKFVWVRKGANPYGPNRVWVIKSTPILFDVGVGSHLT*
Ga0058697_103805992	3300005562	Agave	QIDLLVRKGANPYGPKRVWVSKITPILFDVGVSSHMT*
Ga0058697_103917902	3300005562	Agave	SNFANKFVWVRKDANPHGPNKVWVPRSTPILFDVGVGSRLT*
Ga0058697_104579735	3300005562	Agave	VWVRKGANPHGPKRVWVPKTTPILFDVGVGSHLM*
Ga0058697_104808431	3300005562	Agave	NRFVWVRKGANPHGPKRVWVPKATPILFDVGVGSHST*
Ga0058697_105677181	3300005562	Agave	CYDRIHDSNLATKFVWVRKGTNPHGPKRVWVPKTTPMLFDVGVGSRMT*
Ga0058697_106268241	3300005562	Agave	TKFCYDRIHDSNLANKFVWVRKGANPHGPKRVWVPNTTPILFDVGVGSHMT*
Ga0058697_107046802	3300005562	Agave	FVWVRKGTNPHGPKRVWVPKTTPMLFDVGVGSRMT*
Ga0058697_107138591	3300005562	Agave	DRIHDSNLANKFVWVRKGANPHGPKRVWVLKTTPILFDVGVGSHMT*
Ga0058697_107273321	3300005562	Agave	FVWVRKGTNPHGLKRVWVPKTTPIVFDVGVGSRMT*
Ga0058697_107507782	3300005562	Agave	HDENLANNFVWVRKGTNPYGPKRKWVQKTTPMIFDVGVGSRIT*
Ga0058697_107576411	3300005562	Agave	RLHNVNLANKFVWVREGTNPHGPNKIWVPKTTPLVFDVGVGSHMT*
Ga0058697_107750831	3300005562	Agave	LANKFIWVRKGANPHGPKRVWVPKFTPILFDVGVGSHMT*
Ga0058697_108353931	3300005562	Agave	RINDSNFANRFVWVRKGANPHGPKRVWVPKSTPILFDVGVGSHMT*
Ga0058698_102194101	3300005661	Agave	HLAKFCYDRIHNSNFANKFVWVRKGANPHGPNKVCVPKFTPIVFDVGVGSHLT*
Ga0058698_102865452	3300005661	Agave	LLRIHDANLATKFVWVRKGTNPHGLKRVWVPKTTPIVFDVGVGSRMM*
Ga0058698_103058471	3300005661	Agave	KFVWVREGTNPHGPKKIWVPKTTPPIFDVGVGSHMT*
Ga0058698_103135471	3300005661	Agave	FANKFIWVRKGANPHRPNRVWVPKITPILFDVGVGSHLT*
Ga0058698_103620672	3300005661	Agave	VNLATKFVWVRKGTNPHGRKRVLVPKTTPIVFDVGVGSRMT*
Ga0058698_103644642	3300005661	Agave	INDSNFANRFIWVRKGANPHRPKRVWVPKATPILFDVGVGSHMT*
Ga0058698_103752181	3300005661	Agave	IYDVNLANKFVWVREGTNPHGPKKIWVPKTTPMIFDVGVGSRMT*
Ga0058698_103914302	3300005661	Agave	RINDSNFANRFVWVRKGANPHGPKRVWVPKATPILFDVGVGSHMT*
Ga0058698_104031442	3300005661	Agave	NFANRFVWVRKGANPHGPKRVWVPKATPILFDIGVVSHMT*
Ga0058698_104843482	3300005661	Agave	KFVWVRKCANPHGPNKVWVPKATPIVFDVGVGSHMT*
Ga0058698_105134261	3300005661	Agave	IIHDLNFVNKFVWVRKGASPHGPKKVWVLKSIPISFVVGVGSHKS*
Ga0058698_105281572	3300005661	Agave	FVWVRKGANPHGPKRVWVPKTTPILFDVGVGSHMM*
Ga0058698_105367362	3300005661	Agave	NVNFVNKFVWVRKGANPHGPNKVWVPKSTPILFDVGVGSHLT*
Ga0058698_105510201	3300005661	Agave	SHLAKFCYDRVHDENLANKFVWVRKGANPHGPKRVWVPKTTPILFDVGVGSHLT*
Ga0058698_105734731	3300005661	Agave	VWVREGTNPHGPNKMWVPKTTPRVFDVGVGSHMT*
Ga0058698_105781363	3300005661	Agave	FANRFVWVRKGANPHGPKRVWVSKSTPILFDVGVGSRLT*
Ga0058698_106133261	3300005661	Agave	DRIHDCNLANKFVWVREGTNPHGPNKMWVPKTTPRVFDVGVGSRMT*
Ga0058698_106257112	3300005661	Agave	NKFVWVRKGANPHGPNKVWVPKFTPIVFDVGVGSHLM*
Ga0058698_106350383	3300005661	Agave	IHNSNFANKFVWVRKGANPHGPNKVWVPKATPIVFDVGVGSRLT*
Ga0058698_106411241	3300005661	Agave	LNNVNLANKFVWVREGTNPHGPKKVWVPKTTPPIFDVGVGSPMT*
Ga0058698_106546673	3300005661	Agave	NFVWVREGTNPHGPNKIWVPKTTPLMFDVGVGSRIT*
Ga0058698_106662201	3300005661	Agave	KYVWVKKGANPHGPKKVWVPKTIPISFDVSMGSHQT*
Ga0058698_106690312	3300005661	Agave	YDRINDSNLANNFVWVRKGTNPHGPKRVWVPKTTPIAFDVGVGSRMT*
Ga0058698_106774402	3300005661	Agave	FVWVRKGANPHGPKRVWVPKITPILFDVGVSSHYVRVMVP*
Ga0058698_106792101	3300005661	Agave	VWVRKGANPHGPKRVWVPKFTPILLDVGVGSHMT*
Ga0058698_106813032	3300005661	Agave	RINDSNFANRFIWVRKGANPHGPKRVWVPKVTPILFDVGVVSRLT*
Ga0058698_107047211	3300005661	Agave	DVNLANKFVWVRKGANSHGPKRVWVPKTTPILFDVGVGSHMT*
Ga0058698_107367532	3300005661	Agave	NLATKFVWVRKGINPHGPKRVWVPKITPIVFDVGVSSRKT*
Ga0058698_107391581	3300005661	Agave	HLAKFCYDKIHDSNLANKFVWVRKGANPHGPKRVWVPKTTPILFDVGVGSHLT*
Ga0058698_107680282	3300005661	Agave	KFCYDRMHDSNLANKFVWVRKGANPHGPKRVWVLKITPILFDVGVGSHMT*
Ga0058698_107727822	3300005661	Agave	TKFVWVRKGTNPHGPKRVWVPKTTPIVFDVGVGSRMM*
Ga0058698_107804191	3300005661	Agave	FIWVREGTNPHGPKRVWVPKTTPPIFDVGVGSHMT*
Ga0058698_107824672	3300005661	Agave	DRVHNVNFANKFVWVRKGANPHGPNKVWVPKATPILFYEGVGSHMT*
Ga0058698_107830442	3300005661	Agave	HTSNLAKNFVWVRNETNPHGPKKIWVPKTTPRVFDVGVGSHMT*
Ga0058698_107849601	3300005661	Agave	NDLNFVNRFVWVRKGSNPHEPNKVQVPKATPIVFDVGVSSRLT*
Ga0058698_107851992	3300005661	Agave	FIWVRKDANPHGPNRVWVPKFTSILFDVGVGSGLT*
Ga0058698_107901611	3300005661	Agave	YNLAKNFVWVREGTNPHGPKRIWVLKTTPRIFDVGVGSHMT*
Ga0058698_108110232	3300005661	Agave	FVWVRKGTNPHGPNRVWVPKFTPIVFNVGVSSRLM*
Ga0058698_108139151	3300005661	Agave	FDHINASNNHIWVRKGANPHGPKKVWVPKSTPIVFDVGVGSHLT*
Ga0058698_108144091	3300005661	Agave	NKFVWVREGTNPHGPKKLWVPKTTPLMFDVGVGSHMT*
Ga0058698_108196691	3300005661	Agave	ANPHGPNKVWVPKSTPIIFDVGVGSHMTLEVSVP*
Ga0058698_108250581	3300005661	Agave	FCYDKIHDVNLATKFVWVRKGANPHGPKKMWVPKTTPMLFDVGVGSHMM*
Ga0058698_108255122	3300005661	Agave	FVWVRKGANPHGPKRVWVPKTTPILFDVGVGSHLT*
Ga0058698_108363512	3300005661	Agave	KFVWVREGTNPHGPKKVWVPKTTPPLFDVGVGSHMT*
Ga0058698_108621351	3300005661	Agave	FVWVREGTNPHGPNKMWVPKTTPLVYDVGVGSHMT*
Ga0058698_108705952	3300005661	Agave	DRIHVSNLANNFVWVREGTNPHGPKRIWVPKTTPIVFDVGVGSRMT*
Ga0058698_108754411	3300005661	Agave	NRFVWVRKDANPHGPKRVWVSKATPILFDVGVGSHMT*
Ga0058698_108824861	3300005661	Agave	FVWVRKGANPHGPNRVWVPKSTPILFDVGVGSRLM*
Ga0058698_109065822	3300005661	Agave	NFVNKFVWVRKGANPHGPNRVWVPKFTPILFDVGVGSHLT*
Ga0058698_109098891	3300005661	Agave	NLATKFVWVRKGANPHGPKRVWVPKTTPIVFYVGVSSRMTRE*
Ga0058698_109200231	3300005661	Agave	DVNLATKFVWVRKGTNPHGPKRVWVPKTTPIIFDVRVGSRMT*
Ga0058698_109232371	3300005661	Agave	DRVHDENLANKFVWVRKGANPHGPKRVWVPKTTPILFDIGVGSHMT*
Ga0058698_109294252	3300005661	Agave	NFANRFVWLRKGANPYGPNRVWVPKSTPILFDVGVGSHMT*
Ga0058698_109395781	3300005661	Agave	AKFCYDKIHDVNLATKFVWVRKGANPHRPKRVWVLKTTPIVFDIGVGSRLT*
Ga0058698_109592651	3300005661	Agave	DLNLATKFVWVRKEANPHGPKRVWVSKTTPIVFDVGVGSRMT*
Ga0058698_109630662	3300005661	Agave	TKFVWVRKGANPHGPKRVWVPKTTPIVFDVGVGSRMT*
Ga0058698_109729391	3300005661	Agave	LNTSNFANKFVWVRKGANPHGPNKVWVLKFTPIVFDVGVGSHLT*
Ga0058698_109774281	3300005661	Agave	DVNLATKFVWVRKGANPHGPKRVWVPKTTPIVFDVGVSSHMM*
Ga0058698_109801902	3300005661	Agave	FVWVREGTNPHGPKKLWVPKTTPIVYDVGVGSRMT*
Ga0058698_109988301	3300005661	Agave	IHDSNLATKFVWVRKGTNPHGPKRVWVPKTTPIVFDVGVGPRMT*
Ga0058698_110507291	3300005661	Agave	SNFANKFVWVRKGANPHGPNRVWVPKFTHIIFDVGVSSRLT*
Ga0058698_110597303	3300005661	Agave	LHDSNLATKFVWVRKGANPHGPKRVWVPKTTPIVFDVGVDSRLT*
Ga0058698_110598131	3300005661	Agave	KFCYDRVHDVNLANKFVWVRKGANPHGPNRVWVPNTTPILFDVGVGSHMT*
Ga0058698_110678961	3300005661	Agave	NKFVWVREGTNPHGPKRVWVPKTTPLVFDVGVGSRMT*
Ga0058698_110826161	3300005661	Agave	NKFIWVRKGANPHGPKKVWVPKSTTIIFDVGVGSHLT*
Ga0058698_110918221	3300005661	Agave	ANKFIWVRKGANPHEPKRVWVPKITPILFDVGVGSHST*
Ga0058698_110923841	3300005661	Agave	YDRIHVSNLANKFVWVREGTNPHGPKRIWVPKTTPHMFDVGVGSHMT*
Ga0209372_10211871	3300027033	Agave	NLANKFVWVREGTNPHGPKRQWVPKTTPPIFDVGVGSHMT
Ga0209462_102143351	3300027761	Agave	DFVWVRKGTNPYGPKKKWVPKTIFLTFDVGGSSRIT
Ga0268258_101544032	3300030502	Agave	KFFYDRIHVSNLANKFVWVREGTNPHGPNKRWVPKTTPPIFDVGVGSHMT
Ga0268258_101828471	3300030502	Agave	NFVWVRNKTNPHGPKRVWVPKTTPPIIFDVGVGSHMT
Ga0268249_10168261	3300030504	Agave	TKFVWVRKGANPHGPKRVWVPKTTPILFDVGVGSHLT
Ga0268250_100997271	3300030692	Agave	KFVWIREGTNPHGPKKVWVPKTTPKVFDVGVGSHMT
Ga0268250_102300061	3300030692	Agave	NFANKLVWVRKGANPHGPNKVWVPKATPILFDVGVGSRLT
Ga0268250_103409191	3300030692	Agave	NKFVWVRKGTNPHGPNRVWVPKFTPIVFNVGVSSRLM
Ga0268250_103808811	3300030692	Agave	FVWVRKGTNPHGPKKLWVPKTTPIVFDVGVGSHMT
Ga0268250_104378041	3300030692	Agave	HDENLATKFVWVRKGANPHGPKRIWVPKTTLMLFDVGVGSRMT
Ga0268250_104426841	3300030692	Agave	SKFCYDRVHDSNLANKFVWVRKGANPHGPNRVWVPKATPILFDVGVGSHLT
Ga0268250_104514521	3300030692	Agave	RIHDSNLATKFVWVRKGANPQGPKRVWVPKTTPILFDVGVGSHMT
Ga0268250_104631551	3300030692	Agave	LANKFVWVRKEANHHGPKRVWVPKITPILFDVGVGSHMT
Ga0268250_104634301	3300030692	Agave	EMCIRDRHNVNFANKFVWVRKCANPHGPNRVWVVKFTPILFDVGVGSHLT
Ga0268250_104773291	3300030692	Agave	FVWVRKCANPHGPNRVWVSKVTPILFDVGVGSRLT
Ga0268250_104814011	3300030692	Agave	RIYDVNLATKFVWVRKGTNPHGPKRVWVPKTTLMLFDVSVGSRMT
Ga0268250_104926291	3300030692	Agave	LANKFVWVRKGANSHGPKKVWVPKSISISFDVGVGSHKT
Ga0268250_104959221	3300030692	Agave	DRIYNSNFANKFVWVRKGTNLHGPNKVWVPKSTPIVFDVDVDSHSM
Ga0268250_104980221	3300030692	Agave	VNLATKFVWVRKGTNPHGPKRVWVPKTTPIIFDVGVGSHMT
Ga0268250_105030581	3300030692	Agave	VKFCYDRIHNENFVNKFVWVRKGANPHGPKRVWVPKATPIFDVGVGSRLM
Ga0268250_105057811	3300030692	Agave	VNLANKFVWVREGTNPHGPKKIWVPKTTPMIFDVGVGSRMT
Ga0268250_105149681	3300030692	Agave	LHTSNLATKFIWVREGTNPHGPKRQWVPKTTPPICDVGVGSHMT
Ga0268250_105190321	3300030692	Agave	CYDRIHDSNLANKFVWVRKGANPHGPKRVWVPNTTPILFDVGVGSHMT
Ga0268250_105230151	3300030692	Agave	SNNHIWVRKGANPHGPKKVWVLKSTPIVFDVGVDSHMT
Ga0268250_105727412	3300030692	Agave	YDRLNNSNFANKFVWVRKGANPHGPNKVWVPKFTRIIFDVGVSSHLM
Ga0268250_105752251	3300030692	Agave	TKFVWVRKGTKSHGPKRVWVPKTTPIIFDVSVGSHMT
Ga0268250_105915092	3300030692	Agave	FVWVRKGANPHGPNRVWVPKFTLILFDIDVGSRLT
Ga0268250_105998971	3300030692	Agave	INDLNFPNRFVWVRKGANSHGPKRVWVLKATPISFDVGVGSHMT
Ga0268250_106292141	3300030692	Agave	FVWVRKGANPHGPNRVWVPKFTPIIFDVGVGSHLT
Ga0268250_106724291	3300030692	Agave	FVWVRKGANPLGPNRVWVPKTTSILFDVGVGSHST
Ga0268250_106753701	3300030692	Agave	INGTNNHVWFRKGANPHGPNKIWEPKSTPIIFNVGVGSHLT
Ga0268250_106784631	3300030692	Agave	NLANKFVWVREGTNPHGPKRVWVPKTTPPLFNVGVGSHMT
Ga0268250_107293611	3300030692	Agave	LANKFVWVREGTNPHGPNKIWVPKTTPLMFDVGVGSHMT
Ga0268250_107319251	3300030692	Agave	SKFANKFAWVRKGANLHEPKKIYVPKFTPIVFDVGVGSHTT
Ga0268250_107394871	3300030692	Agave	IFIWVRKDANPHGPNRVWVPKFTSILFDVGVGSGLT
Ga0268250_108247141	3300030692	Agave	NLATKFVWIRKGTNPHGPKRVWVPKTTPILFDVGVGFHMT
Ga0268250_108360411	3300030692	Agave	FCYDKIHDVNLATKFVWVRKGANPHGPKRKWVPKTTPIVFDVGVGSGMT
Ga0268251_100568732	3300032159	Agave	KKFVWVREGTNPHGPKKVWVPKTTPPLFDVGVGSHMT
Ga0268251_100754591	3300032159	Agave	LANKFVWVREGTNPHGPKKLWVPKTTPIVYDVGVGSHMT
Ga0268251_100800411	3300032159	Agave	HVENLAKKFVWVREGTNPHGPKKVWVPKTTPKVFDVGVGSHMT
Ga0268251_100846451	3300032159	Agave	IDMLAKKFVWVREGTNPHGPKRVWVPKTTPPIFDVGVGSHMT
Ga0268251_101395971	3300032159	Agave	NKFVWVRKGTNPHGPKRVWVPKTTPLVYDVGVGSHMT
Ga0268251_102607511	3300032159	Agave	YDRIHDVNLANKFVWVREGTNPHGPKKIWVPKTTPLVYDVGVGSHMT
Ga0268251_103756421	3300032159	Agave	RIHDSNLATKFVWIRKGANPHGPKRVWVPKTTPIVFDVGVGSRMT
Ga0268251_104347951	3300032159	Agave	ALNFANKFVWVRKCANLYGSKKVWVSKSTPIAFDVGVGSHTT
Ga0268251_104617771	3300032159	Agave	DVNLANKFVWVRKGANSHGPKRVWVSKITSILFDVGVGSHMT
Ga0268251_105670121	3300032159	Agave	FDRLHNVNLAKKFVWVREGTNPHGPNKMWVPKTTPPILFDVGVGSHMT