NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F061403

Metagenome Family F061403

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F061403
Family Type Metagenome
Number of Sequences 131
Average Sequence Length 38 residues
Representative Sequence RTLSYYCRQSIAKFDIKTGVVVYELVKQLSLIIVADLRY
Number of Associated Samples 25
Number of Associated Scaffolds 131

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 98.47 %
% of genes from short scaffolds (< 2000 bps) 62.60 %
Associated GOLD sequencing projects 25
AlphaFold2 3D model prediction Yes
3D model pTM-score0.51

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (61.832 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza
(68.702 % of family members)
Environment Ontology (ENVO) Unclassified
(100.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Unclassified
(93.893 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 55.22%    β-sheet: 0.00%    Coil/Unstructured: 44.78%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.51
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 131 Family Scaffolds
PF03732Retrotrans_gag 9.16
PF00078RVT_1 5.34
PF07727RVT_2 2.29
PF14223Retrotran_gag_2 1.53
PF00665rve 0.76
PF13456RVT_3 0.76
PF05701WEMBL 0.76
PF13966zf-RVT 0.76

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 131 Family Scaffolds
COG2801Transposase InsO and inactivated derivativesMobilome: prophages, transposons [X] 0.76
COG2826Transposase and inactivated derivatives, IS30 familyMobilome: prophages, transposons [X] 0.76
COG3316Transposase (or an inactivated derivative), DDE domainMobilome: prophages, transposons [X] 0.76
COG4584TransposaseMobilome: prophages, transposons [X] 0.76


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A61.83 %
All OrganismsrootAll Organisms38.17 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300028786|Ga0307517_10097700All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus trichocarpa2342Open in IMG/M
3300028786|Ga0307517_10143534Not Available1665Open in IMG/M
3300028786|Ga0307517_10556124Not Available572Open in IMG/M
3300028786|Ga0307517_10614114Not Available533Open in IMG/M
3300028794|Ga0307515_10105590Not Available3351Open in IMG/M
3300028794|Ga0307515_10183627Not Available2030Open in IMG/M
3300028794|Ga0307515_10262005Not Available1463Open in IMG/M
3300028794|Ga0307515_10903411Not Available514Open in IMG/M
3300030521|Ga0307511_10023467All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus trichocarpa5749Open in IMG/M
3300030521|Ga0307511_10098958All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus1927Open in IMG/M
3300030521|Ga0307511_10379019Not Available592Open in IMG/M
3300030521|Ga0307511_10453147Not Available506Open in IMG/M
3300030522|Ga0307512_10028884All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus4852Open in IMG/M
3300030522|Ga0307512_10033380All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → rosids incertae sedis → Vitales → Vitaceae → Viteae → Vitis → Vitis vinifera4426Open in IMG/M
3300030522|Ga0307512_10202696Not Available1070Open in IMG/M
3300030522|Ga0307512_10367049Not Available624Open in IMG/M
3300030522|Ga0307512_10390122Not Available590Open in IMG/M
3300031456|Ga0307513_10022765All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta7352Open in IMG/M
3300031456|Ga0307513_10048301Not Available4620Open in IMG/M
3300031456|Ga0307513_10071150All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus trichocarpa3631Open in IMG/M
3300031456|Ga0307513_10229165All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta1671Open in IMG/M
3300031456|Ga0307513_10274851Not Available1465Open in IMG/M
3300031456|Ga0307513_10321999Not Available1303Open in IMG/M
3300031456|Ga0307513_10325187All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta1294Open in IMG/M
3300031456|Ga0307513_10326547All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus alba1290Open in IMG/M
3300031456|Ga0307513_10335758Not Available1264Open in IMG/M
3300031456|Ga0307513_10470371Not Available978Open in IMG/M
3300031456|Ga0307513_10770590Not Available667Open in IMG/M
3300031456|Ga0307513_10913687Not Available585Open in IMG/M
3300031507|Ga0307509_10014712All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus9178Open in IMG/M
3300031507|Ga0307509_10052860Not Available4335Open in IMG/M
3300031507|Ga0307509_10091232All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae3119Open in IMG/M
3300031507|Ga0307509_10100304All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → malvids → Sapindales → Rutaceae → Aurantioideae → Citrus → Citrus unshiu2933Open in IMG/M
3300031507|Ga0307509_10174547Not Available2023Open in IMG/M
3300031507|Ga0307509_10412720All Organisms → Viruses → Predicted Viral1053Open in IMG/M
3300031507|Ga0307509_10484326Not Available924Open in IMG/M
3300031507|Ga0307509_10516620Not Available876Open in IMG/M
3300031507|Ga0307509_10582249Not Available793Open in IMG/M
3300031616|Ga0307508_10040848Not Available4164Open in IMG/M
3300031616|Ga0307508_10060207Not Available3358Open in IMG/M
3300031616|Ga0307508_10065266All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta3207Open in IMG/M
3300031616|Ga0307508_10095520Not Available2563Open in IMG/M
3300031616|Ga0307508_10127048All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Rosales → Rosaceae → Amygdaloideae → Amygdaleae → Prunus → Prunus persica2152Open in IMG/M
3300031616|Ga0307508_10147103Not Available1960Open in IMG/M
3300031616|Ga0307508_10232300Not Available1442Open in IMG/M
3300031616|Ga0307508_10232345Not Available1442Open in IMG/M
3300031616|Ga0307508_10251488All Organisms → Viruses → Predicted Viral1363Open in IMG/M
3300031616|Ga0307508_10279434All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus trichocarpa1263Open in IMG/M
3300031616|Ga0307508_10923040Not Available501Open in IMG/M
3300031649|Ga0307514_10184165Not Available1341Open in IMG/M
3300031649|Ga0307514_10269345All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta987Open in IMG/M
3300031649|Ga0307514_10503863Not Available574Open in IMG/M
3300031730|Ga0307516_10050043All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus4101Open in IMG/M
3300031730|Ga0307516_10121597All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus2400Open in IMG/M
3300031730|Ga0307516_10127613Not Available2326Open in IMG/M
3300031730|Ga0307516_10138032All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Salix → Salix viminalis2210Open in IMG/M
3300031730|Ga0307516_10175431Not Available1880Open in IMG/M
3300031730|Ga0307516_10335623Not Available1179Open in IMG/M
3300031730|Ga0307516_10410054Not Available1013Open in IMG/M
3300031730|Ga0307516_10451564Not Available941Open in IMG/M
3300031730|Ga0307516_10483131Not Available893Open in IMG/M
3300031730|Ga0307516_10516392Not Available848Open in IMG/M
3300031730|Ga0307516_10545146Not Available813Open in IMG/M
3300031730|Ga0307516_10581801Not Available773Open in IMG/M
3300031730|Ga0307516_10760875Not Available628Open in IMG/M
3300031730|Ga0307516_10906174Not Available548Open in IMG/M
3300031838|Ga0307518_10126132Not Available1805Open in IMG/M
3300031838|Ga0307518_10151420All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus1604Open in IMG/M
3300031838|Ga0307518_10173063All Organisms → Viruses → Predicted Viral1469Open in IMG/M
3300031838|Ga0307518_10192143Not Available1366Open in IMG/M
3300031838|Ga0307518_10192299Not Available1365Open in IMG/M
3300031838|Ga0307518_10464785Not Available669Open in IMG/M
3300031838|Ga0307518_10532203Not Available590Open in IMG/M
3300031838|Ga0307518_10593965Not Available531Open in IMG/M
3300032354|Ga0325403_1016485All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus alba6850Open in IMG/M
3300032354|Ga0325403_1018351All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus6423Open in IMG/M
3300032354|Ga0325403_1026706All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta4980Open in IMG/M
3300032354|Ga0325403_1055483Not Available2623Open in IMG/M
3300032354|Ga0325403_1061581Not Available2331Open in IMG/M
3300032354|Ga0325403_1078497Not Available1709Open in IMG/M
3300032354|Ga0325403_1087645All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae1456Open in IMG/M
3300032354|Ga0325403_1104778Not Available1100Open in IMG/M
3300032354|Ga0325403_1111745Not Available993Open in IMG/M
3300032354|Ga0325403_1135743Not Available748Open in IMG/M
3300032354|Ga0325403_1137477Not Available731Open in IMG/M
3300032354|Ga0325403_1152451Not Available612Open in IMG/M
3300032354|Ga0325403_1154295Not Available600Open in IMG/M
3300032355|Ga0325401_1015743Not Available7201Open in IMG/M
3300032355|Ga0325401_1016480All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus7008Open in IMG/M
3300032355|Ga0325401_1029262All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Glycine → Glycine subgen. Soja → Glycine max4860Open in IMG/M
3300032355|Ga0325401_1060487Not Available2698Open in IMG/M
3300032355|Ga0325401_1115279Not Available1312Open in IMG/M
3300032355|Ga0325401_1182960Not Available740Open in IMG/M
3300032355|Ga0325401_1192768Not Available692Open in IMG/M
3300032374|Ga0325400_1001081All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus davidiana21953Open in IMG/M
3300032374|Ga0325400_1050301All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → rosids incertae sedis → Vitales → Vitaceae → Viteae → Vitis → Vitis vinifera3425Open in IMG/M
3300032374|Ga0325400_1170478Not Available1069Open in IMG/M
3300032374|Ga0325400_1171748Not Available1060Open in IMG/M
3300032389|Ga0325405_1000108All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae75452Open in IMG/M
3300032389|Ga0325405_1034777All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta3707Open in IMG/M
3300032389|Ga0325405_1045999Not Available2779Open in IMG/M
3300032390|Ga0325404_1088947All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta959Open in IMG/M
3300032735|Ga0325410_1030508All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta4359Open in IMG/M
3300032740|Ga0325411_1043772All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta2865Open in IMG/M
3300033179|Ga0307507_10004729All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae23548Open in IMG/M
3300033179|Ga0307507_10031869All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida5520Open in IMG/M
3300033179|Ga0307507_10190122Not Available1445Open in IMG/M
3300033179|Ga0307507_10398743Not Available783Open in IMG/M
3300033179|Ga0307507_10442313Not Available721Open in IMG/M
3300033179|Ga0307507_10498846Not Available656Open in IMG/M
3300033180|Ga0307510_10029911All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta6186Open in IMG/M
3300033180|Ga0307510_10087624All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Rosales → Rosaceae → Amygdaloideae → Amygdaleae → Prunus → Prunus persica2977Open in IMG/M
3300033180|Ga0307510_10213133Not Available1451Open in IMG/M
3300033180|Ga0307510_10241520Not Available1300Open in IMG/M
3300033180|Ga0307510_10246339Not Available1278Open in IMG/M
3300033180|Ga0307510_10297904Not Available1076Open in IMG/M
3300033180|Ga0307510_10299287All Organisms → Viruses → Predicted Viral1071Open in IMG/M
3300033180|Ga0307510_10320384All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus trichocarpa1007Open in IMG/M
3300033180|Ga0307510_10426205Not Available768Open in IMG/M
3300033180|Ga0307510_10457909Not Available716Open in IMG/M
3300034389|Ga0325419_068713Not Available1515Open in IMG/M
3300034389|Ga0325419_090539Not Available959Open in IMG/M
3300034688|Ga0325420_067032Not Available1858Open in IMG/M
3300034688|Ga0325420_097638All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta1103Open in IMG/M
3300034689|Ga0325421_000235All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta51928Open in IMG/M
3300034689|Ga0325421_002810All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus17413Open in IMG/M
3300034778|Ga0325423_137386Not Available511Open in IMG/M
3300034899|Ga0325407_000378All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida43057Open in IMG/M
3300034901|Ga0325409_022720All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus deltoides5517Open in IMG/M
3300034901|Ga0325409_029991All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta4362Open in IMG/M
3300034901|Ga0325409_041787All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus deltoides3095Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
EctomycorrhizaHost-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza68.70%
XylemHost-Associated → Plants → Wood → Unclassified → Unclassified → Xylem25.95%
LeafHost-Associated → Plants → Phylloplane → Unclassified → Unclassified → Leaf5.34%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300028786Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EMHost-AssociatedOpen in IMG/M
3300028794Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EMHost-AssociatedOpen in IMG/M
3300030521Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EMHost-AssociatedOpen in IMG/M
3300030522Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EMHost-AssociatedOpen in IMG/M
3300031456Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EMHost-AssociatedOpen in IMG/M
3300031507Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EMHost-AssociatedOpen in IMG/M
3300031616Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EMHost-AssociatedOpen in IMG/M
3300031649Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EMHost-AssociatedOpen in IMG/M
3300031730Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EMHost-AssociatedOpen in IMG/M
3300031838Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EMHost-AssociatedOpen in IMG/M
3300032354Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R4Host-AssociatedOpen in IMG/M
3300032355Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R2Host-AssociatedOpen in IMG/M
3300032374Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R1Host-AssociatedOpen in IMG/M
3300032389Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R2Host-AssociatedOpen in IMG/M
3300032390Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R1Host-AssociatedOpen in IMG/M
3300032735Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdIQD-R3Host-AssociatedOpen in IMG/M
3300032740Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdIQD-R4Host-AssociatedOpen in IMG/M
3300033179Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EMHost-AssociatedOpen in IMG/M
3300033180Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EMHost-AssociatedOpen in IMG/M
3300034389Populus deltoides microbial communities from Bellville, Georgia, United States - Leaf-Control-R4Host-AssociatedOpen in IMG/M
3300034688Populus deltoides microbial communities from Bellville, Georgia, United States - Leaf-PdIQD-R1Host-AssociatedOpen in IMG/M
3300034689Populus deltoides microbial communities from Bellville, Georgia, United States - Leaf-PdIQD-R2Host-AssociatedOpen in IMG/M
3300034778Populus deltoides microbial communities from Bellville, Georgia, United States - Leaf-PdIQD-R4Host-AssociatedOpen in IMG/M
3300034899Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R4Host-AssociatedOpen in IMG/M
3300034901Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdIQD-R2Host-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0307517_1009770013300028786EctomycorrhizaLSYYCRQSIAKFDIKTGVVVYELVKQLSLIIVTDLRY
Ga0307517_1014353413300028786EctomycorrhizaERTLSYYCEQSIAKFDIKTGVVIYELVKQLSLIIVAKLRY
Ga0307517_1055612413300028786EctomycorrhizaLSYYCRQSIAKFNIKTGVVVYELVKQLSLIIVADLRY
Ga0307517_1061411413300028786EctomycorrhizaLERTLSYYCRQSIAKFDIKTGVVVYELVKQLSLIIVADLRY
Ga0307515_1010559013300028794EctomycorrhizaLERTLSYYCEQSIAKFDIKTGVVVYKLVKQLSLIIVAELRY
Ga0307515_1018362713300028794EctomycorrhizaRTLSYYCEQSIAKFDIKTRVVIYELVKQLSLIIVAELRY
Ga0307515_1026200523300028794EctomycorrhizaERTLSYYCEQSIAKFNIKTRVVIYELVKQLNLIIVVELHY
Ga0307515_1090341113300028794EctomycorrhizaISYYCRQSIAKFDIKIGVVVYELVKQLSLIIMADLRY
Ga0307511_1002346713300030521EctomycorrhizaLSYYCRQSIAKFDIKTGVVVYELVKQLSLIIVADLRY
Ga0307511_1009895813300030521EctomycorrhizaSYYCRQSIAKFDIKTGVVVYELVKQLSLIIVADLRY
Ga0307511_1037901913300030521EctomycorrhizaSYYCIQYIAKFDIKTGVVVYELVKQLSLIIVANLCY
Ga0307511_1045314713300030521EctomycorrhizaLERTLSYYCRQSIAKFDIKTGVVVYELVKQLSLIIMADLRY
Ga0307512_1002888413300030522EctomycorrhizaLERTLSYYCEQSIAKFDIKTGVVIYELVKQLSLIIVVKLRY
Ga0307512_1003338013300030522EctomycorrhizaSYYCEQSIAKFDIKTGVVIYELAKQLSLIIVAELRY
Ga0307512_1020269613300030522EctomycorrhizaERTLSYYCRQSIAKFDIKTRVVVYELVKQLSLITAVDLRY
Ga0307512_1036704913300030522EctomycorrhizaWTLSYYCRQSIAKFDIKTGVVVYELVKQLSLIIMADLHY
Ga0307512_1039012213300030522EctomycorrhizaLSYYCEQSIAKFDIKTGVVIYELVKQLSLIIMAELRY
Ga0307513_1002276513300031456EctomycorrhizaLLERTLSYYCEQSIAKFDIKTGVVIYELVKQLNLIIMAELRY
Ga0307513_1004830153300031456EctomycorrhizaERTLSYYYKQSIAKFDIKTGVVVYELVKQLSLIIVADLYY
Ga0307513_1007115053300031456EctomycorrhizaLSYYCEQSIAKFDIKTGVMVYKLVKQLSLIIVAELRY
Ga0307513_1022916513300031456EctomycorrhizaRTLSYYCRQSIAKFDIKTGVVVYELVKQLSLIIVADLRY
Ga0307513_1027485113300031456EctomycorrhizaLSYCCEQSIAKFNIKTGVVIYELVKQLSLIIVAELRY
Ga0307513_1032199913300031456EctomycorrhizaRTLSYYCEQSIAKFDIKTGVVIYKLVKQLSLVIVAELRY
Ga0307513_1032518713300031456EctomycorrhizaYYCRQSIAKFDIKTGVVVYELVKQLSLIIMADLHY
Ga0307513_1032654713300031456EctomycorrhizaYYCEQSIAKFDIKTGVVIYKLVKQLSLVIVAELRY
Ga0307513_1033575813300031456EctomycorrhizaTLSYYCRQSIAKFDIKTGVVVYELVKQLSLIIMADLHY
Ga0307513_1047037123300031456EctomycorrhizaRTLSYCCEQSIAKFNIKTEVVIYELVKQLSLIIMAELRY
Ga0307513_1077059013300031456EctomycorrhizaRTLSYYCKQSIAKFDIKTGVVVYELVKQLSLIIVADLR
Ga0307513_1091368713300031456EctomycorrhizaRTLSYYCEQSIAKFDIKTGVVIYELVKQLSLIIVVELRY
Ga0307509_1001471213300031507EctomycorrhizaERTLSYYCRQSIAKFDIKTGVVVYELVKQLSLIIVADLRY
Ga0307509_1005286013300031507EctomycorrhizaLLERTLSYYCEKSIAKFVIKTGVVVYKLVKQLRLIIVADPDY
Ga0307509_1009123213300031507EctomycorrhizaMINMLVYSSLSYYCKQSIAKFTIKTRVVVYKLVKQLRLIVMVDLGY
Ga0307509_1010030413300031507EctomycorrhizaTLSYYCRQFIAKFDIKTGVVVYELVKQLSLIIVTDLRY
Ga0307509_1017454723300031507EctomycorrhizaTLSYYCRQSIAKFDIKTGVMVYELMKQLSLIIVADLRY
Ga0307509_1041272013300031507EctomycorrhizaYYCEQSIAKFDIKTGVVIYELVKQLNLIIMAELRY
Ga0307509_1048432613300031507EctomycorrhizaERTLSYYCEQSIAKFNIKTGVVIYELVKQLNLIIVVELHY
Ga0307509_1051662013300031507EctomycorrhizaYYCEQSIAKFDIKTGAVIYELAKQLSLIIVAELRY
Ga0307509_1058224913300031507EctomycorrhizaLSYYCKQYIAKFTIKTRVVVYKLVKQLRLIVMVDLGY
Ga0307508_1004084813300031616EctomycorrhizaYYCRQSIAKFDIKTGVVVYELVKQMSLIIVADLHY
Ga0307508_1006020713300031616EctomycorrhizaRTLSYYCRQSIAKFDIKTGVVVYELVKQLSLIIVTDLRY
Ga0307508_1006526613300031616EctomycorrhizaERTLSYYCEQSIAKFDIKTGVVVYKLVKQLSLIIVAELRY
Ga0307508_1009552013300031616EctomycorrhizaIYYCRQSIAKFDIKARVVVYELVKQLSLIIVVDLRY
Ga0307508_1012704813300031616EctomycorrhizaCLSLFLKRTLSYYCEQSIAKFYIKTGVVVYKLVKQLSLIIVAELRY
Ga0307508_1014710333300031616EctomycorrhizaLSYYCEQSIAKFDIKTEVVVYKLVKQLSLIIVAEQCY
Ga0307508_1023230033300031616EctomycorrhizaLLERTLSYYCEQSIAKFAIKIGVVVYELAKQLSLIIVVDLRY
Ga0307508_1023234513300031616EctomycorrhizaILSYYCEQSIAKFAIKTGVVVYKLVKQLRLIIVADPD
Ga0307508_1025148833300031616EctomycorrhizaYYCRQSIAKFDIKTEVVVYELVKQLSLIIEADLRY
Ga0307508_1027943413300031616EctomycorrhizaANFDIKTGVVVYELVKQLSLKLWRIYVINLRENIQSN
Ga0307508_1092304013300031616EctomycorrhizaLSYYCRQSIAKFDIKTVVVVYELVKQLSLIIVADPRY
Ga0307514_1018416513300031649EctomycorrhizaWTLNYYCRQSIAKFDIKTGVVVYELVKQLSLIIVADLRY
Ga0307514_1026934513300031649EctomycorrhizaLLERTLSYYCRQSIAKFDIKTGVVVYELVKQLNLIIVADLRY
Ga0307514_1050386333300031649EctomycorrhizaLERTLSYYCKQSIAKFDIKTRVVVYELVKQLSLTIVADLRY
Ga0307516_1005004313300031730EctomycorrhizaSYYCEQSIAKFDIKTGVVIYELVKQLSLIIVAELRY
Ga0307516_1012159713300031730EctomycorrhizaYYFEQSIAKFDIKTGVVVYKLVKQLSLIIVADLHN
Ga0307516_1012761323300031730EctomycorrhizaLSYYCEQSIAKFDIKTGVVVYKLVKQLSLIIVEKLRY
Ga0307516_1013803223300031730EctomycorrhizaIVYFKRTLSYYCEQSIAKFAIKTGVVIYKLMKQLRLIIVVDLRY
Ga0307516_1017543113300031730EctomycorrhizaLERTLSYYCEQSIAKFDIKTEVVVYKLVKQLNLIIIAELRY
Ga0307516_1033562323300031730EctomycorrhizaLERTLSYYCRQSIAKFDIKTGVVVYELVKQLSLIIVADLRYYF
Ga0307516_1041005423300031730EctomycorrhizaTLSYYCEQSIAKFDIKTGVVIYELVKQLSLIIVAELHY
Ga0307516_1045156413300031730EctomycorrhizaRTLSYYCRQSIAKFDIKTGVVVYELVKQLSLIIMADLRY
Ga0307516_1048313123300031730EctomycorrhizaLLERTLSYYCRQSIAKFDIKTRVVVYELVKQLSLITAVDLRY
Ga0307516_1051639213300031730EctomycorrhizaLSYYYKQFIVKFAIETRVVIYKLVKQLSLIIVTDLRY
Ga0307516_1054514613300031730EctomycorrhizaIILNQSTAKFAIKTRVVIFEFMKRLSLIIMADLSC
Ga0307516_1058180123300031730EctomycorrhizaERPLSYYCEQSIAKFDIKTGVVIYELVKQLSLIIVAELRY
Ga0307516_1076087523300031730EctomycorrhizaLSYYCEQSIAKFDIKTGVVIYELVKQLSLIIVAELHY
Ga0307516_1090617413300031730EctomycorrhizaRTLSYYCRQSIAKFDIKTGVVVYELVKQLSLIIVVDLRY
Ga0307518_1012613233300031838EctomycorrhizaERTLSYYCRQSIAKFDIKTGVVVYELLKQLSLIIVADLRY
Ga0307518_1015142033300031838EctomycorrhizaLSYYCRQSIAKFDIKTRVVVYELVKQLSLIIVVDLRY
Ga0307518_1017306313300031838EctomycorrhizaTLSYYCRQSIAKFDIKTRVVVYELVKQLSLIIVADLRY
Ga0307518_1019214313300031838EctomycorrhizaRTLSYYCRQSIAKFDIKTGVVVYELVKQLSLIIVEDLRY
Ga0307518_1019229923300031838EctomycorrhizaERTLSYYCEQSIAKFDIKTGVVVYKLVKQLSLIIVAELRC
Ga0307518_1046478513300031838EctomycorrhizaYYYRQSIAKFDIKTGVVVYELVKQLSLIFVANLHY
Ga0307518_1053220313300031838EctomycorrhizaRTLSYYCEQSIAKFDIKTGVMVYKLVKQLSLIIIVELRY
Ga0307518_1059396513300031838EctomycorrhizaRTLSYYCEQSIAKFDIKTGVVIYELMKQLSLIIMAELRY
Ga0325403_101648533300032354XylemSYCCEQSIAKFNIKTGVVIYELVKQLSLIIVAELHY
Ga0325403_101835163300032354XylemLERTLSYYCRQFIAKFDIKTGVVVYELVKQPSLIIVADLRY
Ga0325403_102670613300032354XylemLERTLSYYCEQSIAKFDIKTGVVIYKLVKQLSLVIVAELRY
Ga0325403_105548313300032354XylemERTLSYYCRQSIAKFDIKTGVVVYELVKQLSLIIMADLRY
Ga0325403_106158123300032354XylemLLERTLSYCYEQSIAKFNIKTGVVIYELVKQLSLIIVAELRY
Ga0325403_107849743300032354XylemSYYCRQSIAKFDIKTGVVVYELVKQLSLIIVADLHY
Ga0325403_108764513300032354XylemLERTLSYYCRQSIAKFDIKTGVVVYELVKQLNLIIVADLRY
Ga0325403_110477833300032354XylemLSYYCRQSIAKFDIKTGVVVYELVKQLSLIIMADLRY
Ga0325403_111174513300032354XylemTLSYYCRQSIAKFDIKTGVVVYELVKQLSLIIVVDLRY
Ga0325403_113574313300032354XylemLERTLSYYCRQSIAKFDIKTGVVVYELVKQLSLIIVADLHY
Ga0325403_113747713300032354XylemTLSYYCRQSIAKFDIKTGVVVYKLVKQLSLIIMADLCY
Ga0325403_115245113300032354XylemLLERTLSYYCRQSIAKFDIKTGVVVYELVKQLSLIIVADLRC
Ga0325403_115429513300032354XylemSYYCEQSIAKFDIKTGVVVYKLVKQLSLIIVAELRY
Ga0325401_101574383300032355XylemRTLSYYCRQSIAKFDIKTGVVVYELVKQLSLIIVADLHY
Ga0325401_101648053300032355XylemMFDIKTGVVIYELMKQLSLIIVAQLSLIIVADLRY
Ga0325401_102926213300032355XylemLERTLSYYCRQSIAKFDIKTGVVVYELVKQLSLIIVADLRYSS
Ga0325401_106048713300032355XylemLERTLSYYCRQSIAKFDIKTGVVVYELVKQLSLIIVTDLRY
Ga0325401_111527913300032355XylemTLSYYCEQYIATFDIKTRVVVYKLVKQLNLIIVAELRY
Ga0325401_118296013300032355XylemTLSYYCRQSIAKFDIKTGVVVYELVKQLSLIIVADLRY
Ga0325401_119276823300032355XylemLERTLSYYCRQSIAKFDIKTGVVVYELVKQLSLIIVVDLRY
Ga0325400_1001081133300032374XylemTQSYYCRQSIAKFDIKTGVVVYELMKQLSLIIVMDLCY
Ga0325400_105030113300032374XylemERTLSYYYRQSIAKFDIKTGVVVYELVKQLSLIIVADLRY
Ga0325400_117047813300032374XylemYYCRQSIAKFDIKTGVVVYELVKQLSSIIVADLRY
Ga0325400_117174813300032374XylemLSYYCRQSIAKFDIKTGVVVYELVKQLSLIIVADLCY
Ga0325405_100010813300032389XylemYYCRQSIAKFDIKTGVMVYELVKQLSLIIMADLRY
Ga0325405_103477713300032389XylemRTLIYCCEQSIAKFNIKTGVVIYELVKQLSLIIVAELRY
Ga0325405_104599923300032389XylemERTLSYYCRQSIAKFDIKTGVMVYELVKQLSLIIMADLRY
Ga0325404_108894713300032390XylemLERTLSYYCEQSIAKFDIKTRVVIYKLVKQLSLVIVAELRY
Ga0325410_103050853300032735XylemYYCRQFIAKFDIKTGVVVYELVKQLSLIIVADLRY
Ga0325411_104377233300032740XylemSYYCEQSIAKFDIKTGVVIYKLVKQLSLVIVAELRY
Ga0307507_1000472913300033179EctomycorrhizaLLERTLSYCCEQSIAKFNIKTGVVIYELVKQLSLIIVAELHY
Ga0307507_1003186913300033179EctomycorrhizaLERTLSYYCRQSIAKFDIKTGVVVYELVKQLGLIIMADLRY
Ga0307507_1019012213300033179EctomycorrhizaERTLSYYCEQSIAKFDIKTGVVIYELVKQLSLIIVAELRY
Ga0307507_1039874313300033179EctomycorrhizaLLERTLSYYCRQPIAKFDIKTGVVVYELEKQLSLIIVADLRY
Ga0307507_1044231313300033179EctomycorrhizaLSYYCRQSIAKFDIKTGVVVYELMKQLSLIIMADLCY
Ga0307507_1049884613300033179EctomycorrhizaSYYCRQSIAKFDIKIGVVVYELVKQLSLIIVADLCY
Ga0307510_1002991113300033180EctomycorrhizaLKQTLSCYCEQSIAKFAIKTGVVVFKLMKQLRLIIMADLCY
Ga0307510_1008762453300033180EctomycorrhizaTLSYYCRQSITKFDIKTGVVVYELVKKMSLIIVADLRY
Ga0307510_1021313333300033180EctomycorrhizaRTLSYYCRQFIAKFDIKTGVVVYELVKQLSLIIVADLRY
Ga0307510_1024152013300033180EctomycorrhizaLERTLSYYCEQSIAKFGIKTGVVVYKLVKQLSLIIVVELCY
Ga0307510_1024633913300033180EctomycorrhizaLSYYCKQSIAKFDIKTGVVVYELVKQLSLIIMADLHY
Ga0307510_1029790423300033180EctomycorrhizaTLSYYCEQSIAKFAIKTGVVVYKLVKQLRLIIVTDPD
Ga0307510_1029928713300033180EctomycorrhizaLERTLSYYCRQSIAKFDIKTGVVVYELVKQLSLIIVADLCY
Ga0307510_1032038413300033180EctomycorrhizaTLSYYCEQSIAKFDIKTGVMVYKLVKQLSLIIVAELRY
Ga0307510_1042620513300033180EctomycorrhizaLERTLSYYYRQSIAKFDIKTGIVVYELVKQLSLIIVADLRY
Ga0307510_1045790913300033180EctomycorrhizaLLERTLSYYCRQSIAKFDIKTGVVVYEFVKQLSLIIMADLR
Ga0325419_068713_1395_15143300034389LeafRTLSYYCRQSIAKFDIKTGVVVYELVKQLSLIIVADLCY
Ga0325419_090539_3_1223300034389LeafRTLSYCCEQSIAKFNIKTGVVIYELVKQLSLIIVAELCY
Ga0325420_067032_2_1423300034688LeafCLFLLLERTLSYYCRQFIAKFDIKTGVVVYELVKQPSLIIVADLRY
Ga0325420_097638_986_11023300034688LeafTLSYYCRQSIAKFDIKTGVVVYELVKQLSLIIVADLCY
Ga0325421_000235_51816_519263300034689LeafSYYYRQSIAKFDIKTGVVVYELVKQLSLIIVADLRY
Ga0325421_002810_2_1153300034689LeafLSYYCRQSIAKFDIKTGVMVYELVKQLSLIIVADLRY
Ga0325423_137386_3_1193300034778LeafTLSYCCEQSIAKFNIKTGVVIYELVKQLSLIIVAELRY
Ga0325407_000378_2_1183300034899XylemTLSYYCRQSIAKFDIKTGVLVYELVKQLSLIIVADLRY
Ga0325409_022720_5409_55163300034901XylemCEQSIAKFNIKTGVVIYELVKQLSLIIVAELRYWT
Ga0325409_029991_4251_43613300034901XylemSYYCRQFIAKFDIKTGVVVYELVKQLSLIIVADLRY
Ga0325409_041787_2973_30953300034901XylemERTLSYCCEQSIAKFNIKTGVVIYELVKQLSLIIVAELCY


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