Basic Information | |
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Family ID | F061349 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 132 |
Average Sequence Length | 45 residues |
Representative Sequence | MSFLREMLSSDAKISSKRFVGFAAFFMLICSWGADTFSAFEVKD |
Number of Associated Samples | 109 |
Number of Associated Scaffolds | 132 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 97.73 % |
% of genes near scaffold ends (potentially truncated) | 99.24 % |
% of genes from short scaffolds (< 2000 bps) | 90.15 % |
Associated GOLD sequencing projects | 99 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.39 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (90.152 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (44.697 % of family members) |
Environment Ontology (ENVO) | Unclassified (83.333 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) (91.667 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 44.44% β-sheet: 0.00% Coil/Unstructured: 55.56% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.39 |
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Visualization |
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All Organisms Unclassified |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
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Visualization |
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Marine Deep Ocean Seawater Seawater Marine Seawater Microbial Mat Aqueous Seawater Freshwater To Marine Saline Gradient Sea-Ice Brine Marine Seawater Salt Marsh Marine Marine Estuarine Pelagic Marine Seawater Pelagic Marine Marine Marine, Hydrothermal Vent Plume Seawater |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Geographical Distribution | |
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Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Protein ID | Sample Taxon ID | Habitat | Sequence |
DelMOSum2011_101435933 | 3300000115 | Marine | MSFLREMLSSDAKISSKRFVGFMAFFMLICSWGADTFSTFE |
JGI20151J14362_100972353 | 3300001346 | Pelagic Marine | MSFLREMLSSDAKISSKRFVGFAAFFMLICSWGADTFSAFEVKDKILECFMYISV |
JGI24006J15134_100393554 | 3300001450 | Marine | MGFLTDMLSSDAKISSKRTVGFAAFFMLICCWGADTFTAFEVKDKILECFMLK* |
JGI24006J15134_101558642 | 3300001450 | Marine | MGFLTQMLSSEAKISSKRTVGFAAFIMLMASWGADTFSGFEVKDKILEC |
JGI24006J15134_101772851 | 3300001450 | Marine | MGFLTEMLSSEAKISSKRTVGFAAFIMLMASWGADTFSG |
JGI24006J15134_101817112 | 3300001450 | Marine | MGFLQEMLSSEAKISSKRTVGFAAFIMLMASWGADTFSGFEVK |
JGI24006J15134_102270922 | 3300001450 | Marine | MGFLTQMLSSEAKISSKRTVGFAAFIMLMASWGADTFSGFEVKDKI |
JGI25129J35166_10608132 | 3300002484 | Marine | MSFITQMLSDDAKISSKRFIGFASFVMLVGSWTANTFFEFAISEQILQCFMYIT |
JGI25128J35275_10712011 | 3300002488 | Marine | MNFLREMLSSDAKISSKRFVGFMAFFMLICSWGADTFSTFEVKDKILECFM |
PicViral_10043751 | 3300003690 | Marine, Hydrothermal Vent Plume | MSFFTQMLSDDAKISSKRFIGFASFVMLVCSWGANTFGGFDIKDQILQCFMYIT |
Ga0066620_12255051 | 3300004639 | Marine | MSFLTEMLSSDAKISSKRTVGFAAFFMLICCWGADTFSAFED |
Ga0066849_100741861 | 3300005430 | Marine | MNFFREMLSSDAKISSKRFVGFMAFFMLICSWGADSFTTF |
Ga0066854_100557101 | 3300005431 | Marine | MNFIKEMLSDDTKISSKRFIGFASFFMLVLSWCANTFGGFDIKDQIL |
Ga0066864_101433291 | 3300005520 | Marine | MSFLLNMLSDDAKISSKRFIGFSSFVMLVASWIAN |
Ga0066862_100605791 | 3300005521 | Marine | MNFLREMLSSDAKISSKRFVGFMAFFMLICSWGADTF |
Ga0066835_103141381 | 3300005606 | Marine | MSFLREMLSSDAKVSSKRAVGFASFFMLICCWGADTFTA |
Ga0066369_101030693 | 3300005969 | Marine | MSFLFNMLSDDAKISSKRFIGFSSFVMLVLSWGANTFFGFDIKDQILECFM |
Ga0098038_10758413 | 3300006735 | Marine | MSFLREMLSSDAKVSSKRAVGFASFFMLICCWGADTFTAFEVKDKILECFMYI |
Ga0098038_11599471 | 3300006735 | Marine | MNFLREMLSSDAKISSKRFVGFMAFFMLICSWGADTFSAFEV |
Ga0098033_11637582 | 3300006736 | Marine | MSFITQMLSDDAKISSKRFIGFASFVMLVCSWGANTFGGFDIKDQILQCFMY |
Ga0098035_11516472 | 3300006738 | Marine | MNFLKEMLSDDAKISSKRTVGFAAFFMLICSWGADTFTTFEVKEKILECFM |
Ga0098040_10926993 | 3300006751 | Marine | MSFFREMLSSDAKISSKRFVGFMAFFMLICSWGADTF |
Ga0098054_12710832 | 3300006789 | Marine | MGFIQEMLSSDAKISSKRTVGFAAFVMLIASWGAD |
Ga0070750_102737412 | 3300006916 | Aqueous | MNFFREMLSSDAKISSKRFVGFMAFFMLICSWGADTFSAFEVKD |
Ga0070746_102191991 | 3300006919 | Aqueous | MSFIKEMLSSDAKISSKRTVGFAAFFMLICSWGADTF |
Ga0070748_12178311 | 3300006920 | Aqueous | MEFLKQMLSSDAKISSKRTVGFASFFMLICCWGADTFTAFEVKDKILECF |
Ga0098060_10511053 | 3300006921 | Marine | MSFLTEMLSSDAKISSKRTVGFAAFFMLICSWGADTFSAFE |
Ga0098050_11705541 | 3300006925 | Marine | MGFLQEMLSSEAKISSKRTVGFAAFMMLMASWGADTFSDFEVKDKILECFMY |
Ga0098034_11987051 | 3300006927 | Marine | MSFITQMLSDDAKISSKRFIGFASFVMLVGSWVANTFFEFAISEQILQCFMYITVVG |
Ga0070747_11980541 | 3300007276 | Aqueous | MSFLREMLSSDAKISSKRFVGFAAFFMLICSWGADTFSTFEVKDKILECF |
Ga0098052_11429321 | 3300008050 | Marine | MGFLKEMLSSDAKISSKRTFGFAAFFMLICSWGADTFSAFEVKDKILECF |
Ga0115566_100307321 | 3300009071 | Pelagic Marine | MSFLREMLSSDAKISSKRFVGFAAFFMLICSWGADTFSTFE |
Ga0115565_105751702 | 3300009467 | Pelagic Marine | MGFLTQMLSSEAKISSKRTVGFAAFIMLMASWGADTFSGFE |
Ga0115099_100613742 | 3300009543 | Marine | MQFIKEMLSSDAKISSKRFVGFASFFMLICCWGADTFTAFEVKDK |
Ga0115011_106945141 | 3300009593 | Marine | MNFLREMLSSDAKISSKRFVGFMAFFMLMCSWGADTFS |
Ga0114906_11238051 | 3300009605 | Deep Ocean | MSFITQMLSDDAKISSKRFIGFASFVMLVCSWGANTFGGFDIKDQILQCFM |
Ga0115012_101684771 | 3300009790 | Marine | MNFLREMLSSDAKISSKRFVGFMAFFMLICSWGADTFS |
Ga0115012_109423362 | 3300009790 | Marine | MSFLKEMLSSDAKISSKRTVGFAAFFMLICSWGADTFSAFEVKDKIL |
Ga0115012_113071131 | 3300009790 | Marine | MSFLKEMLSSDAKISSKRTVGFAAFFMLICSWGADTFSAFEVKDKILEC |
Ga0098049_10595871 | 3300010149 | Marine | MANFFREMLSSDAKISSKRFVGFAAFAMLILSWGADTFTAAEVKDKILDCFMYIS |
Ga0098056_12149332 | 3300010150 | Marine | MANFFREMLSSDAKISSKRFVGFAAFTMLILSWGADT |
Ga0098061_10100405 | 3300010151 | Marine | MSFLKEMLSSDAKISSKRTVGFAAFFMLICSWGADTFSAFEVKDKILECFMY |
Ga0098061_10853513 | 3300010151 | Marine | MNFLREMLSSDAKISSKRFVGFMAFFMLICSWGADTFSTFEVKDKILE |
Ga0098059_11744171 | 3300010153 | Marine | MSFIKEMLSSDAKISSKRTVGFAAFFMLICSWGADTFSAFEVKDKILECF |
Ga0163179_115160731 | 3300012953 | Seawater | MNFIREMLSSDAKISSKRFIGFASFVMLIASWVANTFWQFEVK |
Ga0180120_103060522 | 3300017697 | Freshwater To Marine Saline Gradient | MSFIREMLSSDAKISSKRFVGFASFFMLICCWGADTFT |
Ga0181404_11606391 | 3300017717 | Seawater | MSFLREMLSSDAKISSKRFVGFASFFMLICCWGAD |
Ga0181417_11065552 | 3300017730 | Seawater | MNFLREMLSSDAKISSKRFVGFMAFFMLMCSWGADTFSTFEVKDKILECFMY |
Ga0181426_10830082 | 3300017733 | Seawater | MSVLREMLSSDAKISSKRFVGFMAFFMLICSWGADTFSAFEVKDKILECFM |
Ga0187218_11120722 | 3300017737 | Seawater | MSFLTEMLSSDAKISSKRTVGFAAFFMLICSWGADTFSTFEVKDKILECFMYIS |
Ga0181397_10122426 | 3300017744 | Seawater | MNFFMNMLSSEAKVSSKRFIGFMAFVMLMASWGAD |
Ga0181427_10810431 | 3300017745 | Seawater | MSFLKEMLSSDAKISSKRTVGFAAFFMLICSWGADTFSTFEVKDKILECFMYISV |
Ga0181405_11841812 | 3300017750 | Seawater | MGFIQEMLSSDAKISSKRVVGFAAFTMLIASWGADTFSAFEVKDKILEC |
Ga0187219_11763201 | 3300017751 | Seawater | MGFLTDMLSSDAKISSKRTVGFAAFFMLICCWGADTFTVFEVKDKILECFMYISV |
Ga0181411_11254521 | 3300017755 | Seawater | MSFFKEMLSSDAKISSKRFVGFMAFFMLICSWGADTFSAFEVKDKSP |
Ga0187220_11124021 | 3300017768 | Seawater | MQFLREMLSSDAKISSKRFVGFASFFMLICCWGADTFTAFEVKDKILECFMY |
Ga0181380_12125172 | 3300017782 | Seawater | MSFIKEMLSSDAKISSKRFVGFMAFFMLICSWGADTFSAFEP |
Ga0181590_102891871 | 3300017967 | Salt Marsh | MQFFREMLSSDAKISSKRFVGFMAFAMLIASWGADTFSAFE |
Ga0181553_103758622 | 3300018416 | Salt Marsh | MNFFREMLSSDAKISSKRFVGFMAFFMLICSWGADTFS |
Ga0181591_102600181 | 3300018424 | Salt Marsh | MSFISEMLSSDAKISSKRVIGFAAFIMLIASWGADTFWAFE |
Ga0206125_101872011 | 3300020165 | Seawater | MSFFKEMLSSDAKISSKRFVGFMAFFMLICSWGADTFSAFEVKDKILECFMYIS |
Ga0206125_102288161 | 3300020165 | Seawater | MSFLREMLSSDAKISSKRFVGFAAFFMLICSWGAD |
Ga0181570_101771443 | 3300020207 | Salt Marsh | MSFISEMLSSDAKISSKRVIGFAAFIMLIASWGADTFWAFEVKDKILDCF |
Ga0211654_10484832 | 3300020247 | Marine | MSFLREMLSSDAKISSKRFVGFMAFFMLICSWGAD |
Ga0211590_102158841 | 3300020387 | Marine | MNFIREMLSSDAKISSKRAIGFASFVMLVASWVANTFWQFEIKEM |
Ga0211659_103584732 | 3300020404 | Marine | MNFFREMLSSDAKISSKRFVGFMAFFMLICSWGADTFSA |
Ga0211651_100637731 | 3300020408 | Marine | MQFFREMLSSDAKISSKRFVGFMAFAMLIASWGADTFSTFEVKDKILECFM |
Ga0211528_101545323 | 3300020417 | Marine | MSFISQMLSSDAKISSKRVIGFAAFIMLIASWGADTFWAFEVKDKIL |
Ga0211528_104014412 | 3300020417 | Marine | MGFLHEMLSSDAKISSKRTVGFLSFFMLICSWGADTFSAFEVKDKILECFM |
Ga0211653_100217641 | 3300020421 | Marine | MSFIREMLSSDAKISSKRFVGFASFFMLICCWGADTF |
Ga0211653_104022421 | 3300020421 | Marine | MNFFREMLSSDAKISSKRFVGFMAFFMLICSSGAKV |
Ga0211521_103051953 | 3300020428 | Marine | MSFIKEMLSSDAKISSKRTVGFAAFFMLICSWGADTFSAFE |
Ga0211554_102697202 | 3300020431 | Marine | MSFIKEMLSSDAKISSKRTVGFAAFFMLICSWGADTFTAFE |
Ga0211639_103607342 | 3300020435 | Marine | MSFLKEMLSDDAKLSSKRTVGFAAFFMLICSWGADTFTTFEVKEKILECFMYISV |
Ga0211559_104980111 | 3300020442 | Marine | MSFISEMLSSDAKISSKRVIGFAAFIMLIASWGADTFWAFEVKDKILDC |
Ga0211643_104348061 | 3300020457 | Marine | MQFLREMLSSDAKISSKRFVGFASFFMLICCWGADTFTAFEVKDK |
Ga0211713_102897462 | 3300020467 | Marine | MSFLTEMLSSDAKISSKRTVGFAAFFMLICSWGADTFSTFEVKDKIL |
Ga0211475_104577071 | 3300020468 | Marine | MSFLREMLSSDAKVSSKRFVGFAAFFMLICSWGADTFSAFEVKDKI |
Ga0211543_100069208 | 3300020470 | Marine | MTTQYYNSNMNFFTEMLSSDAKISSKRFIGFASFVMLIASWVANTFWQF |
Ga0211547_102449101 | 3300020474 | Marine | MSFLREMLSSDAKISSKRTVGFAAFFMLICSWGADTFSAFEVKDKILECFMYIS |
Ga0211547_102633182 | 3300020474 | Marine | MEFLKQMLSSDAKISSKRTVGFASFFMLICCWGADTFTAFEVKDKILECFMYISV |
Ga0206678_102079861 | 3300021084 | Seawater | MSFFTQMLSGDAKVSSKRFIGFASFVMLVASWGANTFGGFD |
Ga0213858_102307241 | 3300021356 | Seawater | MSFLREMLSSDAKISSKRFVGFMAFFMLICSWGADTFSAFEV |
Ga0213868_105476861 | 3300021389 | Seawater | MSFLREMLSSDAKISSKRFVGFMAFFMLICSWGADTFSAFEVKDKILECFMY |
(restricted) Ga0233438_103907472 | 3300024255 | Seawater | MGFIQEMLSSDAKISSKRVVGFAAFTMLIASWGADTFSAF |
Ga0244775_102968501 | 3300024346 | Estuarine | MSFLREMLSSDAKISSKRFVGFAAFFMLICSWGADTFSAFEVKD |
Ga0208157_11020951 | 3300025086 | Marine | MSFLREMLSSDAKVSSKRAVGFASFFMLICCWGADTFTAFEVKDKI |
Ga0208011_10599193 | 3300025096 | Marine | VNFLKEMLSDDAKISSKRTVGFAAFFMLICSWGAD |
Ga0208669_10025991 | 3300025099 | Marine | MSFLREMLSSDAKISSKRFVGFAAFFMLICSWGADTFSTFEV |
Ga0208669_10054571 | 3300025099 | Marine | MSFLREMLSSDAKISSKRFVGFAAFFMLICSWGADTFSTF |
Ga0208669_10592151 | 3300025099 | Marine | MSFLREMLSSDAKVSSKRAVGFASFFMLICCWGADTFTAFEVKDKILECFM |
Ga0208666_10520043 | 3300025102 | Marine | MSFLREMLSSDAKISSKRFVGFMAFFMLICSWGADTFSAFEVKD |
Ga0209644_10382561 | 3300025125 | Marine | MSFLKEMLSSDAKISSKRTVGFAAFFMLICSWGADTFSAFEVKDKILE |
Ga0209348_11347561 | 3300025127 | Marine | MSFLREMLSSDAKISSKRFVGFMAFFMLICSWGADTFS |
Ga0209128_11944851 | 3300025131 | Marine | MSFLLNMLSDDAKISSKRFIGFSSFVMLVASWIANTF |
Ga0209232_10803113 | 3300025132 | Marine | MEFLKQMLSSDAKISSKRFIGFASFVMLIASWVANTFFQYDIKDQI |
Ga0209232_11932762 | 3300025132 | Marine | MSFLREMLSSDAKISSKRFVGFMAFFMLICSWGADTFSAFEVK |
Ga0208299_11210361 | 3300025133 | Marine | MSFFTQMLSGDAKVSSKRFIGFASFVMLVASWGANTFGGFDIKDQIL |
Ga0209336_100415841 | 3300025137 | Marine | MEFLKQMLSSDAKISSKRTVGFASFFMLICCWGADTFTAFEVKDKILECFM |
Ga0209634_11986751 | 3300025138 | Marine | MGFLTEMLSSEAKISSKRTVGFAAFIMLMASWGADTFSGFEVKDKIL |
Ga0209634_12356811 | 3300025138 | Marine | MGFLTEMLSSEAKISSKRTVGFAAFIMLMASWGADTFSGFEVKD |
Ga0209645_11613341 | 3300025151 | Marine | MNFFREMLSSDAKISSKRFVGFMAFFMLICSWGADTF |
Ga0209337_10150436 | 3300025168 | Marine | MGFLTEMLSSDAKISSKRTVGFAAFIMLMASWGADTFSGFEVKDKILECFM |
Ga0209337_12501291 | 3300025168 | Marine | MGFLQEMLSSEAKISSKRTVGFAAFIMLMASWGADTFSGFEVKDKIL |
Ga0208030_11078702 | 3300025282 | Deep Ocean | MSFITQMLSDDAKISSKRFIGFASFVMLVCSWGANTFGGFDIKDQILQCF |
Ga0209657_11228971 | 3300025676 | Marine | MGFIQEMLSSDAKISSKRVVGFAAFTMLIASWGADTFSAFEVKDKILECFMYIS |
Ga0208129_10226073 | 3300026193 | Marine | VNFLKEMLSDDAKISSKRTVGFAAFFMLICSWGADTFTSFEVKEKILECFMYISV |
Ga0208129_10273694 | 3300026193 | Marine | MSFLLNMLSDDAKISSKRFIGFSSFIMLIASWIANTFFEFQVKD |
Ga0208638_10394381 | 3300026199 | Marine | MSFITQMLSDEAKISSKRFIGFSSFVMLIASWIANTFFEFQVKDQIVECF |
Ga0208639_11123443 | 3300026256 | Marine | MSFITQMLSDEAKISSKRFIGFSSFVMLIASWIANTFFEFQVKDQIVECFM |
Ga0208407_11364232 | 3300026257 | Marine | MNFFREMLSSDAKISSKRFVGFMAFFMLICSWGADSFTT |
Ga0208408_11658662 | 3300026260 | Marine | MGFLTEMLSSDAKISSKRTVGFAAFFMLICSWGADTFTAF |
Ga0208133_10561851 | 3300027631 | Estuarine | MGFIQEMLSSDAKISSKRVVGFAAFTMLIASWGADTFSAFEVKDKILE |
Ga0209709_103077182 | 3300027779 | Marine | MGFLKEMLSSDAKISSKRTVGFAAFFMLICSWGADTF |
Ga0209404_103030723 | 3300027906 | Marine | MNFLREMLSSDAKISSKRFVGFMAFFMLMCSWGADTFSAFEVK |
Ga0256368_10407443 | 3300028125 | Sea-Ice Brine | MGFLTDMLSSDAKISSKRTVGFAAFFMLICCWGADTFT |
Ga0257117_11258792 | 3300028175 | Marine | MSFFKDMLSDKAKISSKRFVALSSFVMMIASWIATTFFKFEVSDILIENFMYIT |
Ga0228615_10119091 | 3300028418 | Seawater | MQFIKEMLSSDAKISSKRFVGFASFFMLICCWGADTFTAFEVKDKILECFMY |
Ga0183748_10468643 | 3300029319 | Marine | MQFFREMLSSDAKISSKRFVGFMAFAMLIASWGADTF |
Ga0183748_10951092 | 3300029319 | Marine | MNFFREMLSSDAKISSKRFVGFMAFFMLICSWGADTFSAFEVK |
Ga0183748_10997721 | 3300029319 | Marine | MSFLSQMLSDDAKISSKRFIGFASFTMLVGSWVANTFFKFAISETILENFM |
Ga0183748_11090951 | 3300029319 | Marine | MSFLREMLSSDAKISSKRFVGFMAFFMLICSWGADTFSAFEVKDK |
Ga0183755_10197271 | 3300029448 | Marine | MSFLREMLSSDAKISSKRTVGFAAFFMLICSWGADTFSAFEVKDKILECFMYISV |
Ga0183755_11004522 | 3300029448 | Marine | MNFLKDMLSSDAKVSSKRFVGFASFFMLICCWGADTFTAFEVKDKILECFMYIS |
Ga0308010_13412391 | 3300031510 | Marine | MGFLTEMLSSDAKISSKRTVGFAAFFMLICCWGADTFTAF |
Ga0315318_108401632 | 3300031886 | Seawater | MSFLKEMLSSDAKISSKRTVGFAAFFMLICSWGADTFSAFEVKDKILECF |
Ga0315316_114046911 | 3300032011 | Seawater | MSFLTEMLSSDAKISSKRTVGFAAFFMLICSWGADTFSAFEVKDKILECFMYISV |
Ga0315327_107288722 | 3300032032 | Seawater | MNFFSQMLSGDAEGGVSSKRFIGFASFIMLVSSWVANTFF |
Ga0315305_11702411 | 3300032127 | Marine | VNFLKEMLSDDAKISSKRTVGFAAFFMLICSWGADTF |
Ga0316202_104324301 | 3300032277 | Microbial Mat | MSFLREMLSSDAKISSKRFVGFAAFFMLICSWGADTFSTFEVKDKILECFMY |
Ga0310345_101287043 | 3300032278 | Seawater | MNFIKEMLSDDAKISSKRFIGFASFFMLVLSWGANTFFGFDIKEQ |
Ga0310345_120929132 | 3300032278 | Seawater | MSFITQMLSDDAKISSKRFIGFASFVMLVGSWTANTFFEFAISEQILQCFMYITVVG |
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