Metagenome / Metatranscriptome Family F061310

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F061310
Family Type	Metagenome / Metatranscriptome
Number of Sequences	132
Average Sequence Length	68 residues
Representative Sequence	GPRRRKMILEMVSSPRFQREYVFVRNAPYDRMDRAAFLRRDFWEAHPRRDTLDCVPVAETALAAFASR
Number of Associated Samples	103
Number of Associated Scaffolds	132

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.54 %
% of genes near scaffold ends (potentially truncated)	96.21 %
% of genes from short scaffolds (< 2000 bps)	94.70 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.69

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (85.606 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere (9.091 % of family members)
Environment Ontology (ENVO)	Unclassified (39.394 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (60.606 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 41.67% β-sheet: 10.42% Coil/Unstructured: 47.92%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.69
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.69
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 132 Family Scaffolds
PF05195	AMP_N	6.82
PF01926	MMR_HSR1	4.55
PF04909	Amidohydro_2	3.03
PF11528	DUF3224	2.27
PF07995	GSDH	2.27
PF00753	Lactamase_B	2.27
PF00441	Acyl-CoA_dh_1	2.27
PF13004	BACON	1.52
PF03972	MmgE_PrpD	1.52
PF00561	Abhydrolase_1	1.52
PF08713	DNA_alkylation	0.76
PF00485	PRK	0.76
PF00076	RRM_1	0.76
PF03358	FMN_red	0.76
PF07676	PD40	0.76
PF14534	DUF4440	0.76
PF13520	AA_permease_2	0.76
PF08241	Methyltransf_11	0.76
PF07883	Cupin_2	0.76
PF13442	Cytochrome_CBB3	0.76
PF13419	HAD_2	0.76
PF08308	PEGA	0.76
PF01694	Rhomboid	0.76
PF00557	Peptidase_M24	0.76
PF02566	OsmC	0.76
PF03449	GreA_GreB_N	0.76
PF01145	Band_7	0.76
PF00311	PEPcase	0.76
PF02770	Acyl-CoA_dh_M	0.76
PF06210	DUF1003	0.76
PF13091	PLDc_2	0.76
PF11854	MtrB_PioB	0.76

COG ID	Name	Functional Category	% Frequency in 132 Family Scaffolds
COG0006	Xaa-Pro aminopeptidase	Amino acid transport and metabolism [E]	6.82
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	3.03
COG2133	Glucose/arabinose dehydrogenase, beta-propeller fold	Carbohydrate transport and metabolism [G]	2.27
COG2079	2-methylcitrate dehydratase PrpD	Carbohydrate transport and metabolism [G]	1.52
COG0705	Membrane-associated serine protease, rhomboid family	Posttranslational modification, protein turnover, chaperones [O]	0.76
COG0782	Transcription elongation factor, GreA/GreB family	Transcription [K]	0.76
COG1764	Organic hydroperoxide reductase OsmC/OhrA	Defense mechanisms [V]	0.76
COG1765	Uncharacterized OsmC-related protein	General function prediction only [R]	0.76
COG2352	Phosphoenolpyruvate carboxylase	Energy production and conversion [C]	0.76
COG4420	Uncharacterized membrane protein	Function unknown [S]	0.76
COG4912	3-methyladenine DNA glycosylase AlkD	Replication, recombination and repair [L]	0.76

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	85.61 %
Unclassified	root	N/A	14.39 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	85.61 %
Unclassified	root	N/A	14.39 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	85.61 %
Unclassified	root	N/A	14.39 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	33.33 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	33.33 %
Unclassified	root	N/A	14.39 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	3.03 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.03 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	33.33 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	20.45 %
Unclassified	root	N/A	14.39 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	3.03 %
unclassified Proteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria	1.52 %

Name	Rank	Taxonomy	Distribution
Candidatus Eisenbacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria	33.33 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	18.94 %
Unclassified	root	N/A	14.39 %
Dehalococcoidia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	3.03 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29	1.52 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1.52 %

Name	Rank	Taxonomy	Distribution
Candidatus Eisenbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	33.33 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	18.94 %
Unclassified	root	N/A	14.39 %
unclassified Dehalococcoidia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia	3.03 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29	1.52 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1.52 %

Name	Rank	Taxonomy	Distribution
Candidatus Eisenbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	33.33 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	18.94 %
Unclassified	root	N/A	14.39 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	3.03 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29	1.52 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1.52 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000363\|ICChiseqgaiiFebDRAFT_13226682	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	656	Open in IMG/M
3300000956\|JGI10216J12902_112392830	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	765	Open in IMG/M
3300002459\|JGI24751J29686_10127251	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	537	Open in IMG/M
3300002568\|C688J35102_119322047	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	673	Open in IMG/M
3300004081\|Ga0063454_101058237	All Organisms → cellular organisms → Bacteria	658	Open in IMG/M
3300004114\|Ga0062593_100492478	All Organisms → cellular organisms → Bacteria	1133	Open in IMG/M
3300004114\|Ga0062593_101801154	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	673	Open in IMG/M
3300004114\|Ga0062593_103324462	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300004156\|Ga0062589_100225935	All Organisms → cellular organisms → Bacteria	1379	Open in IMG/M
3300004156\|Ga0062589_100294724	All Organisms → cellular organisms → Bacteria	1249	Open in IMG/M
3300004156\|Ga0062589_101133179	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	743	Open in IMG/M
3300004156\|Ga0062589_101579196	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	649	Open in IMG/M
3300004157\|Ga0062590_101838479	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	622	Open in IMG/M
3300004480\|Ga0062592_102308385	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29	538	Open in IMG/M
3300004643\|Ga0062591_100888107	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	834	Open in IMG/M
3300005093\|Ga0062594_102468166	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	570	Open in IMG/M
3300005290\|Ga0065712_10752259	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	528	Open in IMG/M
3300005331\|Ga0070670_101277778	Not Available	672	Open in IMG/M
3300005332\|Ga0066388_102021635	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	1034	Open in IMG/M
3300005334\|Ga0068869_101760212	Not Available	554	Open in IMG/M
3300005337\|Ga0070682_100654332	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	837	Open in IMG/M
3300005338\|Ga0068868_101550402	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	621	Open in IMG/M
3300005340\|Ga0070689_100837430	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	811	Open in IMG/M
3300005344\|Ga0070661_101296110	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	611	Open in IMG/M
3300005345\|Ga0070692_10032641	All Organisms → cellular organisms → Bacteria	2619	Open in IMG/M
3300005354\|Ga0070675_100000268	All Organisms → cellular organisms → Bacteria	34283	Open in IMG/M
3300005354\|Ga0070675_101665649	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29	588	Open in IMG/M
3300005355\|Ga0070671_101987213	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	517	Open in IMG/M
3300005355\|Ga0070671_102050659	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	509	Open in IMG/M
3300005356\|Ga0070674_101229500	Not Available	666	Open in IMG/M
3300005367\|Ga0070667_102126777	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	529	Open in IMG/M
3300005440\|Ga0070705_100374544	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1046	Open in IMG/M
3300005444\|Ga0070694_100780959	Not Available	782	Open in IMG/M
3300005444\|Ga0070694_100816043	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	766	Open in IMG/M
3300005468\|Ga0070707_100945429	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	827	Open in IMG/M
3300005530\|Ga0070679_102082740	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	517	Open in IMG/M
3300005543\|Ga0070672_100483313	All Organisms → cellular organisms → Bacteria → Proteobacteria	1070	Open in IMG/M
3300005548\|Ga0070665_102474542	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	521	Open in IMG/M
3300005617\|Ga0068859_102565072	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	561	Open in IMG/M
3300005843\|Ga0068860_100735178	All Organisms → cellular organisms → Bacteria → Acidobacteria	998	Open in IMG/M
3300005937\|Ga0081455_10232127	All Organisms → cellular organisms → Bacteria	1361	Open in IMG/M
3300006049\|Ga0075417_10096866	Not Available	1334	Open in IMG/M
3300006163\|Ga0070715_10461111	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	719	Open in IMG/M
3300006196\|Ga0075422_10511671	Not Available	546	Open in IMG/M
3300006580\|Ga0074049_13013239	All Organisms → cellular organisms → Bacteria → Acidobacteria	801	Open in IMG/M
3300006847\|Ga0075431_101809645	Not Available	567	Open in IMG/M
3300006852\|Ga0075433_11966180	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	501	Open in IMG/M
3300006881\|Ga0068865_101829311	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	549	Open in IMG/M
3300007788\|Ga0099795_10630777	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	512	Open in IMG/M
3300009162\|Ga0075423_10789662	All Organisms → cellular organisms → Bacteria → Acidobacteria	1004	Open in IMG/M
3300009176\|Ga0105242_11760596	All Organisms → cellular organisms → Bacteria	657	Open in IMG/M
3300010361\|Ga0126378_11958944	All Organisms → cellular organisms → Bacteria → Acidobacteria	667	Open in IMG/M
3300010403\|Ga0134123_12836298	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	553	Open in IMG/M
3300011429\|Ga0137455_1177795	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	637	Open in IMG/M
3300012167\|Ga0137319_1069670	Not Available	709	Open in IMG/M
3300012212\|Ga0150985_108993863	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	501	Open in IMG/M
3300012479\|Ga0157348_1029335	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	516	Open in IMG/M
3300012532\|Ga0137373_11159637	All Organisms → cellular organisms → Bacteria → Acidobacteria	548	Open in IMG/M
3300012916\|Ga0157310_10428864	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	557	Open in IMG/M
3300012916\|Ga0157310_10589723	All Organisms → cellular organisms → Bacteria → Acidobacteria	500	Open in IMG/M
3300012955\|Ga0164298_11308536	All Organisms → cellular organisms → Bacteria	555	Open in IMG/M
3300012957\|Ga0164303_10029824	All Organisms → cellular organisms → Bacteria	2223	Open in IMG/M
3300012960\|Ga0164301_10736193	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	746	Open in IMG/M
3300013297\|Ga0157378_12369089	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	583	Open in IMG/M
3300013308\|Ga0157375_11802173	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	726	Open in IMG/M
3300014326\|Ga0157380_11034018	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	857	Open in IMG/M
3300014326\|Ga0157380_12513270	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	581	Open in IMG/M
3300014326\|Ga0157380_12719018	Not Available	561	Open in IMG/M
3300014874\|Ga0180084_1031318	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	1016	Open in IMG/M
3300015200\|Ga0173480_10050548	All Organisms → cellular organisms → Bacteria → Proteobacteria	1869	Open in IMG/M
3300015371\|Ga0132258_10436840	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	3260	Open in IMG/M
3300015371\|Ga0132258_11009349	All Organisms → cellular organisms → Bacteria	2103	Open in IMG/M
3300015371\|Ga0132258_13340785	Not Available	1103	Open in IMG/M
3300015372\|Ga0132256_100828336	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1042	Open in IMG/M
3300015372\|Ga0132256_101554022	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	772	Open in IMG/M
3300015373\|Ga0132257_100400093	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	1669	Open in IMG/M
3300015373\|Ga0132257_100790356	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1184	Open in IMG/M
3300015373\|Ga0132257_100816401	All Organisms → cellular organisms → Bacteria → Acidobacteria	1165	Open in IMG/M
3300015373\|Ga0132257_103958870	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	539	Open in IMG/M
3300015374\|Ga0132255_100516991	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1756	Open in IMG/M
3300015374\|Ga0132255_102068089	All Organisms → cellular organisms → Bacteria → Acidobacteria	867	Open in IMG/M
3300015374\|Ga0132255_102450367	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	797	Open in IMG/M
3300015374\|Ga0132255_102579150	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	777	Open in IMG/M
3300015374\|Ga0132255_103618115	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	657	Open in IMG/M
3300018056\|Ga0184623_10301032	Not Available	724	Open in IMG/M
3300018083\|Ga0184628_10058207	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1956	Open in IMG/M
3300022534\|Ga0224452_1073942	All Organisms → cellular organisms → Bacteria	1029	Open in IMG/M
3300022756\|Ga0222622_10383427	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	986	Open in IMG/M
3300022756\|Ga0222622_10740538	Not Available	716	Open in IMG/M
3300022756\|Ga0222622_10934826	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	636	Open in IMG/M
3300024232\|Ga0247664_1115773	All Organisms → cellular organisms → Bacteria → Acidobacteria	624	Open in IMG/M
3300025885\|Ga0207653_10023978	All Organisms → cellular organisms → Bacteria → Acidobacteria	1945	Open in IMG/M
3300025885\|Ga0207653_10395211	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	542	Open in IMG/M
3300025903\|Ga0207680_10972723	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	608	Open in IMG/M
3300025912\|Ga0207707_10747763	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	818	Open in IMG/M
3300025919\|Ga0207657_10363524	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1140	Open in IMG/M
3300025920\|Ga0207649_11064857	All Organisms → cellular organisms → Bacteria	637	Open in IMG/M
3300025926\|Ga0207659_10598061	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	940	Open in IMG/M
3300025926\|Ga0207659_11093482	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	686	Open in IMG/M
3300025932\|Ga0207690_11508052	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	562	Open in IMG/M
3300025933\|Ga0207706_11386930	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	577	Open in IMG/M
3300025934\|Ga0207686_10529333	All Organisms → cellular organisms → Bacteria → Acidobacteria	918	Open in IMG/M
3300025937\|Ga0207669_10516690	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	958	Open in IMG/M
3300025938\|Ga0207704_11046355	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	692	Open in IMG/M
3300025940\|Ga0207691_10416733	All Organisms → cellular organisms → Bacteria → Acidobacteria	1145	Open in IMG/M
3300025941\|Ga0207711_11166953	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	711	Open in IMG/M
3300026075\|Ga0207708_10481935	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1037	Open in IMG/M
3300026075\|Ga0207708_11891692	Not Available	523	Open in IMG/M
3300026089\|Ga0207648_10715459	All Organisms → cellular organisms → Bacteria	928	Open in IMG/M
3300026095\|Ga0207676_11829720	Not Available	606	Open in IMG/M
3300026116\|Ga0207674_12232487	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	510	Open in IMG/M
3300026142\|Ga0207698_10805730	All Organisms → cellular organisms → Bacteria → Acidobacteria	942	Open in IMG/M
3300027821\|Ga0209811_10189335	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	775	Open in IMG/M
(restricted) 3300027872\|Ga0255058_10454982	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	623	Open in IMG/M
3300027873\|Ga0209814_10077954	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	1396	Open in IMG/M
3300028768\|Ga0307280_10268563	Not Available	617	Open in IMG/M
3300031226\|Ga0307497_10211966	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	845	Open in IMG/M
3300031562\|Ga0310886_10098706	All Organisms → cellular organisms → Bacteria → Acidobacteria	1450	Open in IMG/M
3300031716\|Ga0310813_11810306	All Organisms → cellular organisms → Bacteria	573	Open in IMG/M
3300031716\|Ga0310813_12368393	All Organisms → cellular organisms → Bacteria → Acidobacteria	504	Open in IMG/M
3300031858\|Ga0310892_10543613	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	780	Open in IMG/M
3300031892\|Ga0310893_10457928	Not Available	567	Open in IMG/M
3300031944\|Ga0310884_10289664	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	909	Open in IMG/M
3300031995\|Ga0307409_100363815	All Organisms → cellular organisms → Bacteria	1369	Open in IMG/M
3300032012\|Ga0310902_10653420	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	704	Open in IMG/M
3300032017\|Ga0310899_10649498	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	532	Open in IMG/M
3300032075\|Ga0310890_11031790	Not Available	663	Open in IMG/M
3300032157\|Ga0315912_11191883	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	603	Open in IMG/M
3300032211\|Ga0310896_10178659	All Organisms → cellular organisms → Bacteria → Acidobacteria	1029	Open in IMG/M
3300032421\|Ga0310812_10301777	All Organisms → cellular organisms → Bacteria → Acidobacteria	712	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	51.52%
Host-Associated	Host-Associated	48.48%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	48.48%
Terrestrial	Environmental → Terrestrial	43.94%
Aquatic	Environmental → Aquatic	7.58%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	43.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere	27.27%
Rhizoplane	Host-Associated → Plants → Rhizoplane	21.21%
Sediment	Environmental → Aquatic → Sediment	6.82%
Marine	Environmental → Aquatic → Marine	0.76%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	31.06%
Soil	Host-Associated → Plants → Rhizosphere → Soil	15.91%
Loam	Environmental → Terrestrial → Soil → Loam	12.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.36%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	10.61%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	10.61%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.82%
Gulf	Environmental → Aquatic → Marine → Gulf	0.76%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	15.91%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	14.39%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.36%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.61%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	10.61%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	10.61%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	8.33%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.82%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	6.06%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.52%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.52%
Unclassified	Environmental → Aquatic → Marine → Gulf → Unclassified	0.76%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.76%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.76%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.09%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	9.09%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	8.33%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.58%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	6.06%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	6.06%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	4.55%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.55%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	4.55%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	3.79%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.03%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.03%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	2.27%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.27%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.27%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.52%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.52%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.52%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.52%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.52%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.52%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.52%
Seawater	Environmental → Aquatic → Marine → Gulf → Unclassified → Seawater	0.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.76%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.76%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.76%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.76%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.76%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.76%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.76%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.76%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.76%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.76%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.76%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.76%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.76%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002459	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6	Host-Associated	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006580	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011429	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT600_2	Environmental	Open in IMG/M
3300012167	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT333_2	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012479	Unplanted soil (control) microbial communities from North Carolina - M.Soil.1.yng.030610	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012916	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S213-509R-2	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014874	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT660_2_16_10D	Environmental	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300024232	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK05	Environmental	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027872 (restricted)	Seawater microbial communities from Amundsen Gulf, Northwest Territories, Canada - Cases_109_9	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031892	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032017	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032157	Garden soil microbial communities collected in Santa Monica, California, United States - V. faba soil	Environmental	Open in IMG/M
3300032211	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1	Environmental	Open in IMG/M
3300032421	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NN3	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiFebDRAFT_132266821	3300000363	Soil	TRRRKMILEMVSSPRFQREYLFVRNAPYDRMDRAAFVRRDFWVTHPRRAALDCVPVADTVLAAFASP*
JGI10216J12902_1123928301	3300000956	Soil	IGTRRRKMILEMVSSPRFQREYVFVRNAPYDRMDRAAFLRRDFWETHPRRDMLNCVPVANTALAAFASR*
JGI24751J29686_101272511	3300002459	Corn, Switchgrass And Miscanthus Rhizosphere	VSGLALLRGASPDEIIGARRRKMILEMVSSPRFQREYVFVRNAPYDRMDRAAFLRRDFWEAHPRRATLDCVPVAGTALAAFASR*
C688J35102_1193220471	3300002568	Soil	GYLSGLALLRGAAPAEIIGTRRRKMILEMVSSPRFQREYVFVRNAPYDRMDRAAFLRRDFWEAHPRRDTLDCVPVAETALAAFADR*
Ga0063454_1010582371	3300004081	Soil	EIIGSRRRKMILEMVSSPRFQREYVFVRNAPYDRMDRAVFLRRDFWETHPRRDALDCVPVAETVLAAFASR*
Ga0062593_1004924783	3300004114	Soil	FQREYVFVRNAPYDRMDRAAFLRRDFWEAHPRRDTLDCVPVAETALAAFASR*
Ga0062593_1018011542	3300004114	Soil	SPRFQREYVFVRNAPYDRMDRAAFLRRDFWEAHPQRDTLDCVPVAETALAAFAKR*
Ga0062593_1033244622	3300004114	Soil	KMILEMVSSPRFQREYVFVRNAPYDRMDRALFLRRDFWQAHPRRDTLDCVPVAQTGLAAFGGR*
Ga0062589_1002259353	3300004156	Soil	GAGPDEIIGARRRKMILEMLSSPRFQREYVFVRNAPYDRMDRAAFLRRDFWEAHPRRDMLDCVPVAETALAEFASR*
Ga0062589_1002947242	3300004156	Soil	QREYVFVRNAPYDRLDRAVFMRRDFCETHPKRDTFDCVPVAETSLAAFAGR*
Ga0062589_1011331791	3300004156	Soil	DEIIGARRRKMILEMVSSPRFQSEYLFVRNAPYDRMDRAAFLRRDFWETHPRRAGLDCVPVADTALATFKSR*
Ga0062589_1015791962	3300004156	Soil	RRRKMILEMVSSPRFQREYVFVRNAPYDRMDRATFLRRDFWQSHPRRKELDCVPVAQTALAAFASR*
Ga0062590_1018384791	3300004157	Soil	FVRNAPYDRMDRAAFLRADFCSTHPLRDMLDCVPVNQTALAAFAGR*
Ga0062592_1023083851	3300004480	Soil	PRFQREYVFVRNAPYDRMDRAAFLRRDFWQTHPRRDMLDCVPVAETALAAFASR*
Ga0062591_1008881071	3300004643	Soil	RRKMILEMVSSPRFQREYVFVRNAPYDRLDRAVFMRRDFCETHPKRDTFDCVPVAETSLAAFAGR*
Ga0062594_1024681661	3300005093	Soil	RFQREYVFVRNAPYDRMDRAAFLRRDFWETHPRRGMLDCVPVANTALAAFASR*
Ga0065712_107522592	3300005290	Miscanthus Rhizosphere	PRFQQEYLFVRNAPYDRMDRAVFVHRDFWEAHSRRAALDCVPVADTVLAAFASR*
Ga0070670_1012777782	3300005331	Switchgrass Rhizosphere	SPRFQSEYVFVRNAPYDRMDRAAFLRADFCANHPRRDMLDCVPVSQTALAVFARR*
Ga0066388_1020216353	3300005332	Tropical Forest Soil	SPRFQREYVFVRNAPYDRLDRAAFLRRDFWEAHPRRDTLDCVPVSETALASFASR*
Ga0068869_1017602121	3300005334	Miscanthus Rhizosphere	RRKMILEMVSSPRFQNEYVFVRNAPYDRMDRAAFLRADFCANHPRRDMLDCVPVSQTALAVFARR*
Ga0070682_1006543322	3300005337	Corn Rhizosphere	REYVFVRNAPYDRMDRATFLRRDFWKNHPRRDTLDCVPVAETALAAFAGR*
Ga0068868_1015504021	3300005338	Miscanthus Rhizosphere	GATPDEILGTRRRKMILEMLSSPRFQREYVFVRNAPYDGMDRAIFLRRDFWESHPQRATIDCAAVADTALRAFAGR*
Ga0068868_1017279991	3300005338	Miscanthus Rhizosphere	VFVRNAPYDRMDRAAFLRRDFWQTHPRRDMLDCVPVAETALAAFASR*
Ga0070689_1008374301	3300005340	Switchgrass Rhizosphere	GYLSGTALLRGAAPDEIVGARRRKMILEMVSSPRFQREYVFVRNAPYDRLDRAVFLRRDFWEAHPRRDTLDCVPVAETALAAFASR*
Ga0070661_1012961102	3300005344	Corn Rhizosphere	RFQQEYLFVRNAPYDRMDRAVFVHRDFWEAHSRRAALDCVPVADTVLAAFASR*
Ga0070692_100326413	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	LEMVSSPRFQSEYVFVRNAPYDRMDRAAFLRADFCANHPRRDMLDCVPVSQTALAVFAHR
Ga0070675_1000002681	3300005354	Miscanthus Rhizosphere	ARRRKMILEMVSSPRFQREYVFVRNAPYDRMDRAAFLRRDFWQTHPRRDMLDCVPVAETALAAFASR*
Ga0070675_1016656492	3300005354	Miscanthus Rhizosphere	RRKMILEMVSSPRFQREYVFVRNAPYDRMDRAAFLRRDFWEGHPRRDALDCVPVAETALGTFASR*
Ga0070671_1019872131	3300005355	Switchgrass Rhizosphere	ALLRGGNPDEIIGPLRRKMILEMVSSPRFQREYVFVRNAPYDRMDRAAFLRRDFWETHPRRDMLDCVPVANTALAAFASR*
Ga0070671_1020506591	3300005355	Switchgrass Rhizosphere	EGYLSGQALLRGASPDEIIGPRRRKMILEMLSSPRFHREYVFVRNAPYEAMDRAVFLRRDFWEAHPGRATLDCVPVAETALAQVFAR*
Ga0070674_1012295002	3300005356	Miscanthus Rhizosphere	RRRKMILEMLSSPRFQREYVFVRNAPYDRMDRALFLRRDFWQAHPRRDALDCVAVADTALAVFSIRGGR*
Ga0070667_1021267771	3300005367	Switchgrass Rhizosphere	IIGARRRKMILEMVSSPRFQREYVFVRNAPYDRMDRAAFLRRDFWQTHPRRDMLDCVPVAETALAAFASR*
Ga0070705_1003745441	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	RRKMILEMVSSPRFQSEYVFVRNAPYDRMDRAAFLRADFCSTHPLRDMLDCVPVNQTALAAFAGR*
Ga0070694_1007809591	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	GPDEIIGARRRKMILEMVTSPRFQREYVFVRNAPYDRLDRAVFLRRDFWESHPRRDMLDCVPVAETAVAAFASR*
Ga0070694_1008160432	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	FQSEYVFVRNAPYDRMDRAAFLRADFCANHPRRDMLDCVPVSQTALAVFAHR*
Ga0070707_1009454291	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	RKMILEMVSSPRFQREYVFVRNAPYDRMDRAVFLRRDFWEAHPRRNTLDCVPVAETALAAFASR*
Ga0070679_1020827401	3300005530	Corn Rhizosphere	VSSADFQRDYVFVRNAPYDRMDRAAFLRRDFWETHPKRDTLDCVPVSETALAAFANK*
Ga0070672_1004833131	3300005543	Miscanthus Rhizosphere	IGARRRKMILEMVSSPRFQREYVFVRNAPYDRMDRAAFLRRDFWQTHPRRDMLDCVPVAETALAAFASR*
Ga0070665_1024745421	3300005548	Switchgrass Rhizosphere	EIIGTRRRKMILEMVSSPRFQREYVFVRNAPYDRMDRAAFLRRDFWETHPRRGMLDCVPVANTALAAFASR*
Ga0068859_1025650722	3300005617	Switchgrass Rhizosphere	LGTRRRKMNLEMVQSPRFQREYVFVKNAPYEHLDRAVFMRRDFCESHPRRESLGCVPVADTVLAAFAQK*
Ga0068860_1007351783	3300005843	Switchgrass Rhizosphere	GTRRRKMILEMVSSPRFQREYVFVRNAPYDRMDRALFLRRDFWEAHPRRDTLDCVPVAETKLAAFAGPG*
Ga0081455_102321271	3300005937	Tabebuia Heterophylla Rhizosphere	QSEYAFVRNAPYDRMDRAAFLRADFCANHPRRDMLDCVPVSQTALVAFARR*
Ga0075417_100968661	3300006049	Populus Rhizosphere	LTLLRGAGPNEIIGVRRRKMILEMVSSPRFQREYVFVRNAPYDRLDRAVFLRRDFWEAHPRRDTLDCVPVAETALAAFASR*
Ga0070715_104611111	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	GLALLRGATPDEILGTRRRKMILEMLSSPRFQREYVFVRNAPYDGMDRAVFLRRDFWESHPQRATIDCTAVADTALRAFAGR*
Ga0075422_105116711	3300006196	Populus Rhizosphere	GPLRRKMVLEMVSSPRFQSEYVFVRNAPYDRMDRAAFLRADFCANHPRRDMLDCVPVNQTALAVFASR*
Ga0074049_130132392	3300006580	Soil	EYVFVRNAPYDRMDRALFLRRDFWEAHPRRDTLDCVPVADTALAAFAGR*
Ga0075431_1018096451	3300006847	Populus Rhizosphere	ILEMVSSPRFQREYVFVRNAPYDRLDRAVFLRRDFWEAHPRRDTLDCVPVAETALAAFASR*
Ga0075433_119661801	3300006852	Populus Rhizosphere	GNPDEIIGPLRRKMILEMVSSPRFQREYVFVRNAPYDRMDRAAFLRADFWKNHPRRDMLDCVPVNQTALAVFAGR*
Ga0068865_1018293112	3300006881	Miscanthus Rhizosphere	GLALRRGAGGDEVIGARRRKMILEMVSSPRFQREYVFVRNAPYDRLDRAVFMRRDFCETHPKRDTFDCVPVAETSLAAFAER*
Ga0099795_106307771	3300007788	Vadose Zone Soil	GYLSGLALLRGAHPDEIIGARRHKMILEMLSSPRFQREYVFVRNAPYDHLDRAVFLRRDFWETHPRRDTLDCVPVADTALAAFASR*
Ga0075423_107896622	3300009162	Populus Rhizosphere	PDEIIGLLRRKMILEMVSSPRFQREYVFVRNAPYDRLDRAVFLRRDFWEAHPRRDMLDCIPVADTALAAFASR*
Ga0105242_117605962	3300009176	Miscanthus Rhizosphere	MLTSPTFQREYVFVRNAPYTSLDRAVFLRRDFWQAHPKRATLDCVPVAETALAAFAGR*
Ga0126378_119589441	3300010361	Tropical Forest Soil	DEILGPRRRKMILEMVTSPRFQREYVFVRNAPYDRMDRALFLRRDFWEAHPRRATLDCVPVAETTLAVFMKR*
Ga0134123_128362981	3300010403	Terrestrial Soil	MVSSPRFQREYVFVRNAPYDRMDRAAFLRRDFWEAHPRRDRLDCVPVAETGLAAFASR*
Ga0137455_11777952	3300011429	Soil	EYVFVRNAPYDRMDRAAFLRRDFWEAHPRRDTLDCVPVAETALAAFASR*
Ga0137319_10696702	3300012167	Soil	QREYVFVRNAPYDRMDRAAFLRRDFWEAHPRRDTLDCVPVAETALAAFASR*
Ga0150985_1089938631	3300012212	Avena Fatua Rhizosphere	GPRRRKMILEMVSSPRFQREYVFVRNAPYDRMDRAAFLRRDFWEAHPRRDTLDCVPVAETALAAFASR*
Ga0157348_10293352	3300012479	Unplanted Soil	LSGTAVLRGAGPDEVVGTRRRKMILEMLTSPTFQREYVFVRNAPYTSLDRAVFLRRDFWQTHPRRDMLDCVPVAETALAAFASR*
Ga0137373_111596371	3300012532	Vadose Zone Soil	PLRRKMILEIVSSPRFQREYVFVRNAPYDSMDRAAFLRADFWETHPRRDMLDCVPVNQTALAVFAGR*
Ga0157310_104288641	3300012916	Soil	PRRRKMILEMLSSPKFHREYVFVRNAPYEAMDRAVFLRRDFWEAHPRRGELDCVPVADTALKDFAGR*
Ga0157310_105897231	3300012916	Soil	SPRFQREYVFVRNAPYDRMDRAAFLRRDFWETHPRRDTLDCVPVAETALAAFASR*
Ga0164298_113085362	3300012955	Soil	VRNAPYDRMDRAAFVRRDFWEAHPRRRDARLRAVAETALAAFASW*
Ga0164303_100298241	3300012957	Soil	RRNMILEMLSSPRFQREYLFVRNAPYDRMDRAVFLRRDFWEAHPRRETLDCVAVSETALAAFASR*
Ga0164301_107361932	3300012960	Soil	LRGGNPDEIVGPLRRKMILEMVSSPRFQSEYVFVRNAPYDRMDRAAFLRADFCSTHPLRDMLDCVPVNQTALAAFAGR*
Ga0157378_123690892	3300013297	Miscanthus Rhizosphere	EEILGTRRRKMILEMVSSPRFQQEYLFVRNAPYDRMDRAVFVHRDFWEAHSRRAALDCVPVADTVLAAFASR*
Ga0157375_118021731	3300013308	Miscanthus Rhizosphere	EGYLSGKALLRGGNPDEIIGPLRRKMILEMVSSPRFQREYVFVRNAPYDRMDRAAFLRADFWKNHPRRDMLDCVPVNQTALAVFAGR*
Ga0157380_110340181	3300014326	Switchgrass Rhizosphere	EMVSSPRFQREYVFVRNAPYDRMDRAAFLRRDFWEAHPRRDRLDCVPVAETGLAAFASR*
Ga0157380_125132701	3300014326	Switchgrass Rhizosphere	QREYVFVRNAPYDRLDRAVFMRRDFCETHPKRDTFDCVPVAETSLAAFAER*
Ga0157380_127190182	3300014326	Switchgrass Rhizosphere	PRFQSEYVFVRNAPYDRMDRAAFLRADFCANHPRRDMLDCVPVSQTALAVFAHR*
Ga0180084_10313182	3300014874	Soil	SGLALLRGAKPDEVLGVRRRKMNLEMVSSRRFQREYVFVKNAPYDRLDRAVFMRRDFCDSHPRRDTLDCVPVAETALAAFALNQR*
Ga0173480_100505482	3300015200	Soil	DEIVGTRRRKMILEMATSPTFQREYVFVRNAPYSGLDRAVFLRRDFWEAHPRRGELDCVPVADTALKDFAGR*
Ga0132258_104368401	3300015371	Arabidopsis Rhizosphere	KMILEMVASPRFQREDVFVRNAPYDRMDRAAFLRRDFWETHPRRDALDCVPVAETALAVFSSR*
Ga0132258_110093493	3300015371	Arabidopsis Rhizosphere	SGKALLRGRNPDEIVGPLRRKMILEMVSSPRFQREYVFVRNAPYDRMDRAVFLRADFWETHPRRDMLDCVPVNQTALAAFAGR*
Ga0132258_133407852	3300015371	Arabidopsis Rhizosphere	FQREYVFVRNAPYDRMDRAAFLRRDFWEVHPRRDTLDCVPIAETALAAFASR*
Ga0132256_1008283362	3300015372	Arabidopsis Rhizosphere	RRKMILEMVSSPRFQREYVFVRNAPYDRMDRAAFLRRDFWETHPRRGMLDCVPVANTALAAFASR*
Ga0132256_1015540222	3300015372	Arabidopsis Rhizosphere	ALLRGAGPDEIIGARRRKMILEMVSSPRFQREYVFVRNAPYDRMDRAAFLRRDFWETHPRRDALDCVPVAETALAVFSSR*
Ga0132257_1004000931	3300015373	Arabidopsis Rhizosphere	RRKMILEMVSSPRFQREYLFVRNAPYDRMDRAVFLRRDFWDAHPRRAALDCVAVADTVLATLASP*
Ga0132257_1007903561	3300015373	Arabidopsis Rhizosphere	RGAGPDEIIGARRRKMILEMVSSPRFQREYVFVRNAPYDRMDRAAFLRRDFWETHPRRDMLDCVPVAKTALAAFASR*
Ga0132257_1008164013	3300015373	Arabidopsis Rhizosphere	GYLSGLALLHGASPEEIIGARRRKMILEMVSSPRFQREYVFVRNAPYDRMDRAAFLRRDFWQTHPRRDMLDCVPVAETALAAFASR*
Ga0132257_1039588702	3300015373	Arabidopsis Rhizosphere	SGLTLLRGAIPDEIVGTRRRKMILEMVSSARFQREYVFVRNAPYDRMDRAAFLRRDFWESHPRRDSLDCVPVAETALAAFASR*
Ga0132255_1005169911	3300015374	Arabidopsis Rhizosphere	DEIIGTRRRKMILEMVSSPRFQREYVFVRNAPYDRMDRAAFLRRDFWETHPRRGMLDCVPVANTALAAFASR*
Ga0132255_1020680893	3300015374	Arabidopsis Rhizosphere	ILEMVSSPRFQREYVFVRNAPYDRLDRAVFMRRDFCETHPKRDTFDCVPVAETTLAAFAGR*
Ga0132255_1024503672	3300015374	Arabidopsis Rhizosphere	LRGAGQDEIIGARRRKMILEMVSSPRFQREYVFVRNAPYDRMDRAAFLRRDFWETHPRRDALDCVPVAETALAAFASR*
Ga0132255_1025791502	3300015374	Arabidopsis Rhizosphere	GNPDEIIGLLRRKMILEMVSSPRFQREYVFVRNAPYDRMDRAAFLHADFWKNHPLRDRLDCVPVNQTALAAFAEQ*
Ga0132255_1036181152	3300015374	Arabidopsis Rhizosphere	GYLSGLALLRGAGPDEIIGARRRKMILEMVSSPRFQREYVFVRNAPYDRMDRAAFLRRDFWEAHPRRDTLDCVPVAETALAAFAGR*
Ga0184623_103010321	3300018056	Groundwater Sediment	RRKMILEMVSSPRFQREYVFVRNAPYDRMDRAVFVRRDFWEAHPQRDTLDCVPVAETALAAFARR
Ga0184628_100582073	3300018083	Groundwater Sediment	PDEIIGARRRKMILEMVTSPRFQREYVFVRNAPYDRLDRAVFLRRDFWEAHPRRDTLDCVPVAETALAAFASR
Ga0224452_10739422	3300022534	Groundwater Sediment	MVSSPRFQREYLFVRNAPYDRLDRAVFLRRDFWEAHPRRDTLDCVPVAETALAAFASR
Ga0222622_103834271	3300022756	Groundwater Sediment	ALIRCAGPDEIIGPRRRKMILEMVSSPRFQREYVFVRNAPYDRMDRAAFLRRDFWETHPRRETLDCVPVAQTALAAFASR
Ga0222622_107405382	3300022756	Groundwater Sediment	ILEMVASPRFQREYLFVRNAPYDRMDRAVFLRRDFWEAHPRRDTLDCVPVAETALAAFAG
Ga0222622_109348261	3300022756	Groundwater Sediment	GTRRRKMILEMVSSPRFQREYLFVRNAPYDRMDRAAFLRRDFWEAHPRRDTLDCVPVAETALAAFASRRAEKTH
Ga0247664_11157731	3300024232	Soil	GLALLRGASTEEIIGTRRRKMILEMVSSPRFQREYVFVRNAPYDRMDRALFLRRDFWEAHPRRDTLDCVPVAETKLAAFAGPG
Ga0207653_100239781	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	GKALLRGGNPDEIVGPLRRKMVLEMVSSPRFQSEYVFVRNAPYDRMDRAAFLRADFCANHPRRDMLDCVPVSQTALAVFAHR
Ga0207653_103952111	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	RKMILEMVSAPRFQREYLFVRNAPYDRMDRAVFLRRDFWEAHPRRDTLDCVPVAETALAAFASR
Ga0207680_109727232	3300025903	Switchgrass Rhizosphere	GKALLRGGNPDEIVGLLRRKMVLEMVSSPRFQSEYVFVRNAPYDRMDRAAFLRRDFWQTHPRRDMLDCVPVSQTALAVFAHR
Ga0207707_107477631	3300025912	Corn Rhizosphere	LETVSSPRFQREYVFVRNAPYDRMDRATFLRRDFWKNHPRRDTLDCVPVAETALAAFAGR
Ga0207657_103635242	3300025919	Corn Rhizosphere	AVLHGAGPDEIIGTRRRKMILEMVSSPRFQREYVFVRNAPYDRMDRATFLRRDFWKNHPRRDTLDCVPVAETALAAFAGR
Ga0207649_110648572	3300025920	Corn Rhizosphere	DEIIGARRRKMILEMVSSPRFQREYVFVRNAPYDRMDRAAFLRRDFWEAHPRRATLDCVPVAGTALAAFASR
Ga0207659_105980612	3300025926	Miscanthus Rhizosphere	ALLRGAGTDEIIGPRRRKMILEMLSSPRFHREYVFVRNAPYEAMDRAVFLRRDFWEAHPGRATLDCVPVAETALAQVFAR
Ga0207659_110934821	3300025926	Miscanthus Rhizosphere	MVSSPRFQREYVFVRNAPYDRMDRAAFLRRDFWEGHPRRDALDCVPVAETALGTFASR
Ga0207690_115080522	3300025932	Corn Rhizosphere	PRFQREYVFVRNAPYDRMDRAAFLRRDFWQTHPRRDMLDCVPVSQTALAVFARR
Ga0207706_113869302	3300025933	Corn Rhizosphere	DEIVGTRRRKMILEMVSSPRFQREYVFVRNAPYDRLDRAVFLRRDFWEAHPRRDTLDCVPVAETALAAFASR
Ga0207686_105293332	3300025934	Miscanthus Rhizosphere	TRRRKMILEMLTSPTFQREYVFVRNAPYTSLDRAVFLRRDFWEAHPRRDTLDCVPVAETKLAAFAGPG
Ga0207669_105166903	3300025937	Miscanthus Rhizosphere	LSGLALLHGASPEEIIGARRRKMILEMVSSPRFQREYVFVRNAPYDRMDRAAFLRRDFWQTHPRRDMLDCVPVAETALAAFASR
Ga0207704_110463552	3300025938	Miscanthus Rhizosphere	YLSGLALRRGAGGDEVIGARRRKMILEMVSSPRFQREYVFVRNAPYDRLDRAVFMRRDFCETHPKRDTFDCVPVAETSLAAFAER
Ga0207691_104167333	3300025940	Miscanthus Rhizosphere	PDEIIGARRRKMILEMVSSPRFQREYVFVRNAPYDRMDRAAFLRRDFWQTHPRRDMLDCVPVAETALAAFASR
Ga0207711_111669531	3300025941	Switchgrass Rhizosphere	SPRFQREYVFVRNAPYDRMDRAAFLRRDFWQTHPRRDMLDCVPVAETALAAFASR
Ga0207708_104819351	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	FQREYVFVRNAPYDRLDRAVFLRRDFWEAHPRRDTLDCVPVAETALAAFASR
Ga0207708_118916922	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	YVFVRNAPYDRMDRAAFLRADFCANHPRRDMLDCVPVSQTALAVFARR
Ga0207648_107154592	3300026089	Miscanthus Rhizosphere	MILEMVTSPTFQREYVFVRNAPYTGLDRAVFLRRDFWEAHPRRAELDCVPIAETALATFAKQ
Ga0207676_115148482	3300026095	Switchgrass Rhizosphere	MILEMLSSPRFQTEYVFVRNAPYDGMDRAIFLRRDFWESHPQRATIDCAAVADTALRAFAGR
Ga0207676_118297201	3300026095	Switchgrass Rhizosphere	RRKMILEMVSSPRFQNEYVFVRNAPYDRMDRAAFLRADFCANHPRRDMLDCVPVSQTALAVFARR
Ga0207674_122324872	3300026116	Corn Rhizosphere	DEIIGARRRKMILEMVSSPRFQREYVFVRNAPYDRMDRAVFLRRDFWEAHPRRNTLDCVPVAETALAAFASR
Ga0207698_108057301	3300026142	Corn Rhizosphere	GYLSGKALLRGGNPDEIVGPLRRKMVLEMVSSPRFQSEYVFVRNAPYDRMDRAAFLRADFCANHPRRDMLDCVPVSQTALAVFAHR
Ga0209811_101893351	3300027821	Surface Soil	RRMEPYRRARRRLLIAAVEIIGARRRKMILEMVTSPRFQREYVFVRNAPYDRLDRAVFLRRDFWEAHPRRDTLDCVPVAETALAAFASRR
(restricted) Ga0255058_104549821	3300027872	Seawater	RSEYLFLRNAPYEFRDRALFLRRDFWEDHPLRDSLDCIPVTETAMYPRAPAD
Ga0209814_100779541	3300027873	Populus Rhizosphere	YLSGRALLRGAGPDEIIGARRRKMILEMVSSPRFQREYVFVRNAPYDRMDRSVFLRRDFWQTHPRRDTLDCVPVAETALAAFASR
Ga0307280_102685631	3300028768	Soil	KMILEMVSSPRFQREYVFVRNAPYDQLDRATFMRRDFCEAHPRRDTLDCVPVAETALAAFASR
Ga0307497_102119661	3300031226	Soil	RSAGLDEIIGARRRKMILEMVSSPRFQREYVFVRNAPYDRMDRAAFLRRDFWEAHPRRDTLDCVPVAETALAVFASR
Ga0310886_100987063	3300031562	Soil	GGNPDEIVGPLRRKMVLEMVSSPRFQSEYVFVRNAPYDRMDRAAFLRADFCANHPRRDMLDCVPVSQTALAVFAHR
Ga0310813_118103061	3300031716	Soil	SSPRFQREYVFVRNAPYDRMDRAAFLRRDFWEAHPRRATLDCVPVAGTALAAFASR
Ga0310813_123683932	3300031716	Soil	RRKMILEMVSSPRFQREYVFVRNAPYDRMDRALFLRRDFWEAHPRRDTLDCVPVAETKLAAFAGPG
Ga0310892_105436132	3300031858	Soil	MVLEMVSSPRFQSEYVFVRNAPYDRMDRAAFLRADFCANHPRRDMLDCVPVSQTALAVFAHR
Ga0310893_104579281	3300031892	Soil	EYVFVRNAPYDRMDRAAFLRADFCANHPRRDMLDCVPVSQTALAVFAHR
Ga0310884_102896642	3300031944	Soil	GPDEIIGTRRRKMILEMVSSPRFQREYVFVRNAPYDRMDRAAFLRRDFWEAHPRRDRLDCVPVAETGLAAFASR
Ga0307409_1003638152	3300031995	Rhizosphere	LRGAGADEIIGTRRRKMILEMVSSPRFQREYVFVRNAPYDRMDRAAFLRRDFWQAHPRRDTLDCVPVAETALAAFAGR
Ga0310902_106534202	3300032012	Soil	GYLSGLALLHGASPEEIIGARRRKMILEMVSSPRFQREYVFVRNAPYDRMDRAAFLRRDFWQTHPRRDMLDCVPVAETALAAFASR
Ga0310899_106494982	3300032017	Soil	GASPEEIIGARRRKMILEMVSSPRFQREYVFVRNAPYDRMDRAAFLRRDFWQTHPRRDMLDCVPVAETALAAFASR
Ga0310890_110317901	3300032075	Soil	EGYLSGLALLHGASPEEIIGARRRKMILEMVSSPRFQREYVFVRNAPYDRMDRAAFLRADFCANHPRRDMLDCVPVSQTALAVFAHR
Ga0315912_111918832	3300032157	Soil	SGSALLKGVNAEDVIGTRRRKMILEMVTSPRFQRDYVFVRNAPYDRLDRAVFLRRDFWETHPQRHTLDCIPVSETTLASFAAR
Ga0310896_101786592	3300032211	Soil	FQSEYVFVRNAPYDRMDRAAFLRADFCANHPRRDMLDCVPVSQTALAVFAHR
Ga0310812_103017772	3300032421	Soil	VSSPRFQREYVFVRNAPYDRMDRALFLRRDFWEAHPRRDTLDCVPVAETKLAAFAGPG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters