Metagenome / Metatranscriptome Family F061241

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F061241
Family Type	Metagenome / Metatranscriptome
Number of Sequences	132
Average Sequence Length	58 residues
Representative Sequence	MDRAAHYRDKANRALRLAEAAWQPELKDRLRSLAKDYDEIAEDIETGATEIRHPELLDR
Number of Associated Samples	98
Number of Associated Scaffolds	132

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	38.17 %
% of genes near scaffold ends (potentially truncated)	36.36 %
% of genes from short scaffolds (< 2000 bps)	94.70 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.72

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (58.333 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (38.636 % of family members)
Environment Ontology (ENVO)	Unclassified (41.667 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (51.515 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 50.57% β-sheet: 0.00% Coil/Unstructured: 49.43%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.72
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.72
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
a.25.1.2: Ribonucleotide reductase-like	d3n20b_	3n20	0.83526
a.24.16.0: automated matches	d1wola_	1wol	0.82682
a.25.1.1: Ferritin	d1moja_	1moj	0.8253
a.25.1.0: automated matches	d7o6ea_	7o6e	0.82113
a.25.1.1: Ferritin	d1nfva_	1nfv	0.81974

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 132 Family Scaffolds
PF00719	Pyrophosphatase	14.39
PF00072	Response_reg	9.85
PF13439	Glyco_transf_4	5.30
PF11578	DUF3237	3.79
PF13827	DUF4189	1.52
PF06627	DUF1153	1.52
PF00717	Peptidase_S24	1.52
PF05494	MlaC	1.52
PF13579	Glyco_trans_4_4	1.52
PF04392	ABC_sub_bind	0.76
PF01609	DDE_Tnp_1	0.76
PF00296	Bac_luciferase	0.76
PF01028	Topoisom_I	0.76
PF03070	TENA_THI-4	0.76
PF13610	DDE_Tnp_IS240	0.76

COG ID	Name	Functional Category	% Frequency in 132 Family Scaffolds
COG0221	Inorganic pyrophosphatase	Energy production and conversion [C]	14.39
COG2854	Periplasmic subunit MlaC of the ABC-type intermembrane phospholipid transporter Mla	Cell wall/membrane/envelope biogenesis [M]	1.52
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.76
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.76
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.76
COG3293	Transposase	Mobilome: prophages, transposons [X]	0.76
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	0.76
COG3569	DNA topoisomerase IB	Replication, recombination and repair [L]	0.76
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.76
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.76
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.76

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	58.33 %
Unclassified	root	N/A	41.67 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	58.33 %
Unclassified	root	N/A	41.67 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	58.33 %
Unclassified	root	N/A	41.67 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	49.24 %
Unclassified	root	N/A	41.67 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	45.45 %
Unclassified	root	N/A	41.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.67 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	22.73 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.27 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.52 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.67 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	22.73 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.27 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.76 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.67 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	22.73 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.27 %
Rhodospirillales bacterium 69-11	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium 69-11	0.76 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.76 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001545\|JGI12630J15595_10067878	Not Available	703	Open in IMG/M
3300001867\|JGI12627J18819_10050739	Not Available	1732	Open in IMG/M
3300004092\|Ga0062389_100064612	All Organisms → cellular organisms → Bacteria	3025	Open in IMG/M
3300005332\|Ga0066388_101841127	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1078	Open in IMG/M
3300005434\|Ga0070709_10234258	Not Available	1315	Open in IMG/M
3300005435\|Ga0070714_101611581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	634	Open in IMG/M
3300005467\|Ga0070706_101820327	Not Available	553	Open in IMG/M
3300005518\|Ga0070699_101658574	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	586	Open in IMG/M
3300005764\|Ga0066903_100671225	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1818	Open in IMG/M
3300005764\|Ga0066903_106093630	All Organisms → cellular organisms → Bacteria → Proteobacteria	631	Open in IMG/M
3300006172\|Ga0075018_10176374	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1001	Open in IMG/M
3300006175\|Ga0070712_101471864	Not Available	595	Open in IMG/M
3300007076\|Ga0075435_101145793	Not Available	680	Open in IMG/M
3300007255\|Ga0099791_10102559	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1317	Open in IMG/M
3300007258\|Ga0099793_10060747	All Organisms → cellular organisms → Bacteria → Proteobacteria	1689	Open in IMG/M
3300007788\|Ga0099795_10261940	Not Available	749	Open in IMG/M
3300010046\|Ga0126384_11745344	Not Available	590	Open in IMG/M
3300010154\|Ga0127503_11164745	All Organisms → cellular organisms → Bacteria	593	Open in IMG/M
3300010359\|Ga0126376_10566511	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1067	Open in IMG/M
3300010359\|Ga0126376_12945111	Not Available	526	Open in IMG/M
3300010361\|Ga0126378_10572696	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1244	Open in IMG/M
3300010361\|Ga0126378_10641101	Not Available	1176	Open in IMG/M
3300010361\|Ga0126378_10727559	Not Available	1104	Open in IMG/M
3300010376\|Ga0126381_101636307	Not Available	930	Open in IMG/M
3300010376\|Ga0126381_102012928	Not Available	832	Open in IMG/M
3300010376\|Ga0126381_104479945	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	539	Open in IMG/M
3300010398\|Ga0126383_13110472	Not Available	542	Open in IMG/M
3300012202\|Ga0137363_10961395	Not Available	725	Open in IMG/M
3300012203\|Ga0137399_10294006	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1341	Open in IMG/M
3300012203\|Ga0137399_11018432	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	697	Open in IMG/M
3300012205\|Ga0137362_10480169	All Organisms → cellular organisms → Bacteria	1075	Open in IMG/M
3300012208\|Ga0137376_10726475	All Organisms → cellular organisms → Bacteria	856	Open in IMG/M
3300012361\|Ga0137360_10187175	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1668	Open in IMG/M
3300012362\|Ga0137361_11658507	Not Available	559	Open in IMG/M
3300012683\|Ga0137398_10382119	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	957	Open in IMG/M
3300012927\|Ga0137416_11951280	Not Available	538	Open in IMG/M
3300012971\|Ga0126369_12655862	Not Available	585	Open in IMG/M
3300016270\|Ga0182036_10047205	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2683	Open in IMG/M
3300016270\|Ga0182036_10238859	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1354	Open in IMG/M
3300016294\|Ga0182041_11152449	Not Available	706	Open in IMG/M
3300016294\|Ga0182041_11193550	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	694	Open in IMG/M
3300016319\|Ga0182033_10403300	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1156	Open in IMG/M
3300016357\|Ga0182032_10545494	All Organisms → cellular organisms → Bacteria	959	Open in IMG/M
3300016357\|Ga0182032_11039388	Not Available	701	Open in IMG/M
3300016371\|Ga0182034_10132692	Not Available	1843	Open in IMG/M
3300016387\|Ga0182040_11556795	Not Available	562	Open in IMG/M
3300016387\|Ga0182040_11625813	Not Available	550	Open in IMG/M
3300016387\|Ga0182040_11676872	Not Available	542	Open in IMG/M
3300016404\|Ga0182037_11231121	Not Available	658	Open in IMG/M
3300016422\|Ga0182039_10325885	All Organisms → cellular organisms → Bacteria → Proteobacteria	1281	Open in IMG/M
3300016422\|Ga0182039_10483798	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1066	Open in IMG/M
3300016422\|Ga0182039_11557281	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	603	Open in IMG/M
3300016445\|Ga0182038_11156462	Not Available	689	Open in IMG/M
3300016445\|Ga0182038_11171355	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	684	Open in IMG/M
3300018058\|Ga0187766_11089486	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	573	Open in IMG/M
3300020579\|Ga0210407_10243742	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1400	Open in IMG/M
3300020579\|Ga0210407_10263052	Not Available	1345	Open in IMG/M
3300020579\|Ga0210407_10527059	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	923	Open in IMG/M
3300020580\|Ga0210403_10289086	Not Available	1343	Open in IMG/M
3300020580\|Ga0210403_10507447	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	979	Open in IMG/M
3300020580\|Ga0210403_10563223	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	922	Open in IMG/M
3300020581\|Ga0210399_10803006	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	768	Open in IMG/M
3300020583\|Ga0210401_11631820	Not Available	502	Open in IMG/M
3300021168\|Ga0210406_10478046	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	988	Open in IMG/M
3300021170\|Ga0210400_10308683	All Organisms → cellular organisms → Bacteria	1299	Open in IMG/M
3300021170\|Ga0210400_10621900	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	890	Open in IMG/M
3300021171\|Ga0210405_10135874	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1945	Open in IMG/M
3300021181\|Ga0210388_11746932	Not Available	514	Open in IMG/M
3300021405\|Ga0210387_11252245	Not Available	643	Open in IMG/M
3300021432\|Ga0210384_10310012	All Organisms → cellular organisms → Bacteria → Proteobacteria	1421	Open in IMG/M
3300021432\|Ga0210384_11048810	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	718	Open in IMG/M
3300021478\|Ga0210402_10663046	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	965	Open in IMG/M
3300021478\|Ga0210402_11408127	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	624	Open in IMG/M
3300021559\|Ga0210409_10294423	Not Available	1464	Open in IMG/M
3300021560\|Ga0126371_10435050	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1457	Open in IMG/M
3300021560\|Ga0126371_10651486	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1202	Open in IMG/M
3300025929\|Ga0207664_10925059	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	783	Open in IMG/M
3300026557\|Ga0179587_10538324	Not Available	767	Open in IMG/M
3300027502\|Ga0209622_1030792	Not Available	955	Open in IMG/M
3300027548\|Ga0209523_1013867	All Organisms → cellular organisms → Bacteria	1523	Open in IMG/M
3300027651\|Ga0209217_1169660	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	598	Open in IMG/M
3300028047\|Ga0209526_10024698	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4212	Open in IMG/M
3300031057\|Ga0170834_102483043	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	1335	Open in IMG/M
3300031128\|Ga0170823_11820850	Not Available	578	Open in IMG/M
3300031231\|Ga0170824_100442482	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2731	Open in IMG/M
3300031231\|Ga0170824_116462926	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium 69-11	1259	Open in IMG/M
3300031231\|Ga0170824_128112034	Not Available	659	Open in IMG/M
3300031543\|Ga0318516_10528894	Not Available	676	Open in IMG/M
3300031545\|Ga0318541_10535622	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	655	Open in IMG/M
3300031545\|Ga0318541_10588706	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	622	Open in IMG/M
3300031546\|Ga0318538_10197860	Not Available	1072	Open in IMG/M
3300031564\|Ga0318573_10474978	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	673	Open in IMG/M
3300031564\|Ga0318573_10612398	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	586	Open in IMG/M
3300031573\|Ga0310915_10942554	Not Available	604	Open in IMG/M
3300031679\|Ga0318561_10529370	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	649	Open in IMG/M
3300031681\|Ga0318572_10243001	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1058	Open in IMG/M
3300031682\|Ga0318560_10660136	Not Available	566	Open in IMG/M
3300031708\|Ga0310686_101283193	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1683	Open in IMG/M
3300031748\|Ga0318492_10560774	Not Available	608	Open in IMG/M
3300031751\|Ga0318494_10579059	Not Available	656	Open in IMG/M
3300031754\|Ga0307475_10740758	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	782	Open in IMG/M
3300031763\|Ga0318537_10152433	Not Available	861	Open in IMG/M
3300031763\|Ga0318537_10227095	Not Available	694	Open in IMG/M
3300031771\|Ga0318546_10470249	All Organisms → cellular organisms → Bacteria	881	Open in IMG/M
3300031771\|Ga0318546_11333876	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	504	Open in IMG/M
3300031780\|Ga0318508_1132084	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	704	Open in IMG/M
3300031793\|Ga0318548_10334087	Not Available	744	Open in IMG/M
3300031820\|Ga0307473_10340217	All Organisms → cellular organisms → Bacteria	961	Open in IMG/M
3300031823\|Ga0307478_11775278	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	507	Open in IMG/M
3300031860\|Ga0318495_10222898	All Organisms → cellular organisms → Bacteria	847	Open in IMG/M
3300031890\|Ga0306925_10924027	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	895	Open in IMG/M
3300031890\|Ga0306925_12205568	Not Available	512	Open in IMG/M
3300031893\|Ga0318536_10671199	Not Available	517	Open in IMG/M
3300031897\|Ga0318520_10026108	All Organisms → cellular organisms → Bacteria	2859	Open in IMG/M
3300031912\|Ga0306921_10421585	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1557	Open in IMG/M
3300031912\|Ga0306921_11137514	Not Available	873	Open in IMG/M
3300031941\|Ga0310912_10346938	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1153	Open in IMG/M
3300031942\|Ga0310916_10580930	All Organisms → cellular organisms → Bacteria	953	Open in IMG/M
3300031946\|Ga0310910_11187786	Not Available	592	Open in IMG/M
3300032010\|Ga0318569_10563932	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	530	Open in IMG/M
3300032039\|Ga0318559_10236168	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	844	Open in IMG/M
3300032042\|Ga0318545_10076646	All Organisms → cellular organisms → Bacteria → Proteobacteria	1154	Open in IMG/M
3300032042\|Ga0318545_10175491	Not Available	765	Open in IMG/M
3300032043\|Ga0318556_10563216	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	595	Open in IMG/M
3300032076\|Ga0306924_10163387	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2553	Open in IMG/M
3300032180\|Ga0307471_100807692	Not Available	1105	Open in IMG/M
3300032180\|Ga0307471_100844999	Not Available	1083	Open in IMG/M
3300032180\|Ga0307471_102781514	Not Available	621	Open in IMG/M
3300032261\|Ga0306920_102700409	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	678	Open in IMG/M
3300033289\|Ga0310914_10867972	Not Available	801	Open in IMG/M
3300033290\|Ga0318519_10181793	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1192	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.24%
Host-Associated	Host-Associated	0.76%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	96.97%
Aquatic	Environmental → Aquatic	2.27%
Plants	Host-Associated → Plants	0.76%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	96.97%
Freshwater	Environmental → Aquatic → Freshwater	1.52%
Sediment	Environmental → Aquatic → Sediment	0.76%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.76%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	84.85%
Loam	Environmental → Terrestrial → Soil → Loam	11.36%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.76%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.76%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.76%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.76%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	64.39%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.45%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.55%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.76%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.76%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.76%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.76%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	38.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	17.42%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	9.85%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.85%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.55%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.55%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.79%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.03%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.27%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.52%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.76%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.76%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.76%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.76%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.76%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027502	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027548	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027651	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12630J15595_100678782	3300001545	Forest Soil	MDRAAYYRDRAEHIRRLADAAWQPELKEALRRLANDYDEVVEDIETGADELLYR*
JGI12627J18819_100507392	3300001867	Forest Soil	MDRAAHYRDKANRALRLAEAAWQPELKDRLRSLAKDYEEIAEDIETGATEIRHPELLER*
Ga0062389_1000646122	3300004092	Bog Forest Soil	MDRSAHYRDQANHARQLADATWQPDLEDMLRHLAKDFDEVAEDIETGTIEIRHLELLDG*
Ga0066388_1018411271	3300005332	Tropical Forest Soil	MDRADHYRAKANNARRLADAAWQPELKDRLHRLADDYEEIAQHTETVRPKSDTRSF*
Ga0070709_102342582	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MDRAAHYRDKANRALRLAEAAWQPELKDRLRSLAKDYDEIAEDIETGATEIRHPELLDR*
Ga0070714_1016115811	3300005435	Agricultural Soil	RGVGTSFGCRCFKVMDRAAHYRDKANRALRLAEAAWQPELKDRLRSLAKDYDEIAEDIETGATEIRHPELLDR*
Ga0070706_1018203271	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MGMLFGWRCFEFMDRAAYYRDRAERIRRLADAAWQPGFKEALRRLANDYDQVVEDIEMGATEIRHNELL*
Ga0070699_1016585742	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MNRAAHYREQANHARRLARAAWQLDLADMLRLLAQDYDKVAEDIEAGATDIGHAELLL*
Ga0066903_1006712254	3300005764	Tropical Forest Soil	MDLSAHYRDQANHARQLADATWQPDLEDFLRRLAKDYDETAQDIEAGVTEVRHSELLP*
Ga0066903_1060936301	3300005764	Tropical Forest Soil	MDDATHFRDQANHARRLADAAWQPDLKDILRSLAKDYDEVAEDMERGAAKIRHAELLDR*
Ga0075018_101763741	3300006172	Watersheds	MDRAAHYRAKANNARRLADAAWQPELKDRLHGLADDYDEIAEDIVTGSTDIRHPELLDR*
Ga0070712_1014718641	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MNRAAHYREQANHARRLARAAWQLDLADMLRLLAKDYDKVAEDVEAGATDIGHAELLL*
Ga0075435_1011457931	3300007076	Populus Rhizosphere	MDCAAHYREQANHARRLARAAWQLDLADMLRLLAKDYDKVAEDIEAGATDIGHAELLL*
Ga0099791_101025591	3300007255	Vadose Zone Soil	MDRAAYYRDRAERIRQLADAAWQPGLKEALRRLANDYDQVVEDIETGATEIRHSELL*
Ga0099793_100607476	3300007258	Vadose Zone Soil	MDRAAYYRDRAERIWQLADAAWQPGLKEALRRLANDYDQVVEDIETGATEIRHSELL*
Ga0099795_102619402	3300007788	Vadose Zone Soil	VQPTTATRPTALRLAEAAWQPELKDRLRSLAKDYDEIAEDIETCATEIRHPELLDR
Ga0126384_117453441	3300010046	Tropical Forest Soil	MDLSAHYRDQANHARQLADATWQPDLEDFLRRLAKDYDETAQDIEAGVSEVRHSELLP*
Ga0127503_111647452	3300010154	Soil	RRQANHARQLADATPQDDLEDLLRRLAKNYDEVAEDIETGADEIRHAELLDGGSPRS*
Ga0126376_105665111	3300010359	Tropical Forest Soil	NHARRLADAAWQLDLADMLRRLAEDYDERAECIETGAPEIRHADLSDDR*
Ga0126376_129451111	3300010359	Tropical Forest Soil	MDRAANYRAKANNAQRLADAAWQPELKDQLKGLADDYDEIAEDIETGVPEIRYPELLAVIAR*
Ga0126378_105726962	3300010361	Tropical Forest Soil	MERAAHYRDRANHTRKLADAAWQPDLKDMLRGLANDYDEVADDIENGATEIRHVELLDE*
Ga0126378_106411013	3300010361	Tropical Forest Soil	MDRAAHYCDQAKHARRLADAAWQLDLADMLRRLAEDYDERAECVETGTPEIRHAELLDE*
Ga0126378_107275591	3300010361	Tropical Forest Soil	MARAARYRDQAKHARRLADAAWQPDLQDTLRSLAKDYDEIAEDIERGAAEIRYAELLDR*
Ga0126381_1016363072	3300010376	Tropical Forest Soil	MDLSAHYRDQANHARQLADATWQPDLEDFLRRLAEDYDETARDIEAGVTEVRHSELLP*
Ga0126381_1020129281	3300010376	Tropical Forest Soil	VMDLSAHYRDQANHARQLADATWQPDLEDFLRRLAKDYDETAQDIEAGVTEVRHSELLP*
Ga0126381_1044799451	3300010376	Tropical Forest Soil	VNYRNKAEHVRRLADAAWQLDLQDTLRSLAKDYDEIAEDIESGAAQIRHIELLLK*
Ga0126383_131104721	3300010398	Tropical Forest Soil	VCSLYGKLSFAVMDLSAHYRDQANHARQLADATWQPDLEDFLRRLAKDYDETAQEIEAGVTEVRHSELLP*
Ga0137363_109613952	3300012202	Vadose Zone Soil	MDRAAYYRDRAERIRRLADAAWQPGFKEALRRLANDYDQVVEDIEMGATEIRHNELL*
Ga0137399_102940061	3300012203	Vadose Zone Soil	MGILFGWWCFEFMDRAAYYRDRAERIRRLADAAWQPGLKEALRRLANDYDQVVEDIETGAPEIRHSELL*
Ga0137399_110184322	3300012203	Vadose Zone Soil	MDRAAHYREQANHARRLARAAWQLDLADMLRLLAQDYGKVAEEIEAGATDIGHAELLL*
Ga0137362_104801691	3300012205	Vadose Zone Soil	EFMDRAAYYRDRAERIRQLADAAWQPGLKEALRRLANDYDQVVEDIETGATEIRHSELL*
Ga0137376_107264751	3300012208	Vadose Zone Soil	MDRAGYYRNRAEQIQRLADAVWQPDLKEMLRGTAQDYDEVAEDIEAGATEIRHPELLNR*
Ga0137360_101871751	3300012361	Vadose Zone Soil	TATRPTALRLAEAAWQPELKDRLRSLAKDYDEIAEDIETGATEIRHPELLDR*
Ga0137361_116585071	3300012362	Vadose Zone Soil	VMDRAAHYRDHANHARQLADAAWQPDLEDTLRRLAKDYDEVAEDIETGAIEIRHTELLDE
Ga0137398_103821192	3300012683	Vadose Zone Soil	MANRALRLAEAAWQPELKDRLRSLAKDYDEIAEDIETGATEIRHPELLDR*
Ga0137416_119512801	3300012927	Vadose Zone Soil	MDRAAYYRDRAERIRRLADAAWQPELKEALHRLANDYDEVVQDIETGVPKIRH
Ga0126369_126558622	3300012971	Tropical Forest Soil	VMDLSAHYRDQANHARQLADATWQPDLEDFLRRLAKDYDETAQDIEAGVTEVHHSELLP*
Ga0182036_100472054	3300016270	Soil	MDRADHYRAKANNLRRLADAAWQPELKDRLHRLADDYDEIAEDIETGATQIRHPQLLDS
Ga0182036_102388593	3300016270	Soil	MVCDGKCSVVMDGAAHYRNKAKRARQLADLAWQPDLQVTLRSLATDYDEIAEDIESGETEIRQAELIGD
Ga0182041_111524491	3300016294	Soil	MDRAARYRTKAKRARELADAAWQPDLQDALRSLATDYDEIAEDIERAAAEI
Ga0182041_111935501	3300016294	Soil	MDRAAHYRDKAKRARQLADAAWQPDLQDTLRALAKDYDEIAEDIESGAPE
Ga0182033_104033001	3300016319	Soil	AHYREQANHARRLARAAWQLDLADMLRHLAKDYDEVAEDIEAGATEIGHAELLL
Ga0182032_105454943	3300016357	Soil	HARRLARAAWQLDLADMLRRLAKDYDEVAEDIEAGATKIGHAELLSRYP
Ga0182032_110393881	3300016357	Soil	MDRAAHYREQANHVRRLARAAWQLDLADMLRRLAKDYDKVVENIEASVTKIEHAELPL
Ga0182034_101326924	3300016371	Soil	MDRAAHYRQQADHARQLADAAWQPDLADMLRCIANDYDELAENIEAGATEPRGMIT
Ga0182040_115567952	3300016387	Soil	MDRAARYRDQAKHARRLADATWQLDLADVLRSMAKDYDEVAEDIETGAIESRHAELLDR
Ga0182040_116258131	3300016387	Soil	HYRDQANHARQLADATWQPDLEDFLRRLAKDYDETARDIEAGVTEVRHSELLP
Ga0182040_116768721	3300016387	Soil	MDRAAHYRGKANNARRLGDSAWQPELKDRLHGLADDFDEIAEDIEKCSTEIRHPELLDR
Ga0182037_112311212	3300016404	Soil	MNRAAHYRDQATHARQLADAAWQPELRDMLRSIAKDCDEVAEGIETGATEIRDAGLLDR
Ga0182039_103258853	3300016422	Soil	FAVMDRAAHYREQANHARRLARAAWQLDLADMLRRLAKDYDEVAEDIEAGATKIGHAELLSRYP
Ga0182039_104837982	3300016422	Soil	MDRAAHYRDKAKRARQLADAAWQPDLQDTLRTLAKDYDEIAEDMESGAPEIRHAELLDE
Ga0182039_115572811	3300016422	Soil	SLAHYEWFCDGKRSEGMDRAARYRTKAKRARELADAAWQPDLQDALRSLATDYDEIAEDIERAAAEIRHAELLDE
Ga0182038_111564621	3300016445	Soil	QANHARRLARAAWQLDLADMLRHLAKDYDEVAEDIEAGATEIGHAELLL
Ga0182038_111713551	3300016445	Soil	MDRAAHYRDKAKRARQLADAAWQPDLQDTLRTLAKDYDEIAEDIESGAPEIRHAELLG
Ga0187766_110894861	3300018058	Tropical Peatland	MVWDGKCSQCMDQAVHYRNKAEHVRQLADAAWQLDLQDTLRSLAKDYDEIAEDLESGAAQIRHAELLVK
Ga0210407_102437422	3300020579	Soil	MDRAAHYRGKANNARRLADAAWQPEIKDRLNGLADDYDEIAEDIETGSTDIRHPELLDR
Ga0210407_102630521	3300020579	Soil	MGMLFGWRCFEFMDRAAYYRDRAERIRRLADAAWQPGLKEALRRLANDYDQVVEDIEMGATEIRHNELL
Ga0210407_105270592	3300020579	Soil	MERAAHYRDKANRALRLAEAAWQPELKDRLRSLAKDYEEIAEDIETGATEIRHPEILER
Ga0210403_102890861	3300020580	Soil	MDRAAHYRGKANNARRLADAAWQPELKDRLNGLADDYDEIAEDIETGSTDIRHPELLDR
Ga0210403_105074472	3300020580	Soil	MPVFQGHGTCSPLPRQSQPRSALAEAAWQPELKDRLRSLAKDYEEIAEDIETGATEIRHPELLER
Ga0210403_105632231	3300020580	Soil	MDRAAHYREQANHARRLARAAWQLDLADMLRLLAKDYDKVAEDIEAGATEIGHAELLL
Ga0210399_108030062	3300020581	Soil	MERAAHYRDKANRALRLAEAAWQPELKDRLRSLAKDYEEIAEDIETGATEIRHPELLER
Ga0210401_116318201	3300020583	Soil	MDRAAHYRDKANRALRLAEAAWQPELKDRLRSLAKDFDEIAEDIETGATEIRHPELLDR
Ga0210406_104780462	3300021168	Soil	MDRAAHYREQANHARRLARAAWQLGLADMLRLLAKDYDKATEDIKAGATDIGHAELLV
Ga0210400_103086832	3300021170	Soil	MDRAAHYRDKANRALRLAEAAWQPELKDRLRSLAKDYDEIAEDIETGATEIRHPELLDR
Ga0210400_106219001	3300021170	Soil	MDRAAYYRDRAEHIRRLADAAWQPELKEALRRLANDYDEVVEDIETGADKIRHSELLYR
Ga0210405_101358742	3300021171	Soil	MPVFQGHGPCSHYRDKANRALRLAEAAWQPELKDRLRSLAKDYDEIAEDIETGATEIRHPELLDR
Ga0210388_117469321	3300021181	Soil	EQANHARRLARAAWQLDLADMLRLLAKDYDKVAEDIEAGATEIGHAELLL
Ga0210387_112522452	3300021405	Soil	MDRAAHYRDKANRALRLAEAAWQPELKDRLRSLAKDYEEIAEDIETGATEIRHPELLER
Ga0210384_103100123	3300021432	Soil	RGKANNARRLADAAWQPEIKDRLNGLADDYDEIAEDIETGSTDIRHPELLDR
Ga0210384_110488102	3300021432	Soil	MNRAAHYREQANHARRLARAAWQLDLADMLRLLAKDYDKVAEDIEAGATDIGHAELLL
Ga0210402_106630462	3300021478	Soil	RPLPSQSHNARRLADAAWQPELKDRLHGLANDYDEIAEDIETSSTDIRHPELLDR
Ga0210402_114081271	3300021478	Soil	PRSALAEAAWQPELKDRLRSLAKDYEEIAEDIETGATEIRHPELLER
Ga0210409_102944232	3300021559	Soil	MPVFQGHGPCSHYRDKANRALRLAEAAWQPELKDRLRSLDKDYDEIAEDIETGATEIRHPELLDR
Ga0126371_104350502	3300021560	Tropical Forest Soil	MDRAANYRAKANNAQRLADAAWQLELKDQLKGLADDYDKIAEDIETGVPEIPYPELLAVVAR
Ga0126371_106514863	3300021560	Tropical Forest Soil	MDRAAHYRNMAKRVRRLVHAAWQLDLQDTLRSLAKDYDEIAEDIESGTAQIRHAELSKK
Ga0207664_109250592	3300025929	Agricultural Soil	GCRCFKVMDRAAHYRDKANRALRLAEAAWQPELKDRLRSLAKDYDEIAEDIETGATEIRHPELLDR
Ga0179587_105383242	3300026557	Vadose Zone Soil	ILFGWRCFEFMDRAAYYRDRAERIRQLADAAWQPGLKEALRRLANDYDQVVEDIETGATEIRHSELL
Ga0209622_10307921	3300027502	Forest Soil	MDRAAHYRDKANRALRLAEAAWQPELKDRLRSLAKDYEEIAEDIETGATEI
Ga0209523_10138672	3300027548	Forest Soil	MDRAAHYRDKANRALRLAEAAWQPELKDRLRSLAKDYEEIAEDIETGATEIRHPELLDR
Ga0209217_11696602	3300027651	Forest Soil	MNAAHYREQANHARRLARAAWQLDLADMLRLLAKDYDKVAEDIEAGATDIGHAELLL
Ga0209526_100246986	3300028047	Forest Soil	MDRAAYYRDRAEHIRRLADAAWQPELKEALRRLANDYDEVVEDIETGADELLYR
Ga0170834_1024830433	3300031057	Forest Soil	MDRAAHYRAKANNARRLADAAWQPELKDRLHGLADDYDEIAEDIETGSTDIRHPELLDR
Ga0170823_118208501	3300031128	Forest Soil	MNRVAHYRDQANHTRQLADAAWQLDLRDMLRCIAKDYDEVAEDIETGATEIRHAELLDG
Ga0170824_1004424821	3300031231	Forest Soil	MDRAAHYRAKANNARRLADAAWQPELKDRLHGLADDYDEIAEDIETGSTEIRQPELLDR
Ga0170824_1164629262	3300031231	Forest Soil	VQPTYRDKANRARRLADAAWQPELKDGLRSLAKDFDDIAEDIETGAAEIRHPELLDR
Ga0170824_1281120342	3300031231	Forest Soil	MDRAAHYRDKANRALRLAEAAWQPELKDRLRSLAKDYDEIAEDIETGATEIRHPELLER
Ga0318516_105288942	3300031543	Soil	MDRAAHYREQANHARRLARAAWQLDLADMLRRLAKDYDEVAEDIEAGATKIGHAELLSRY
Ga0318541_105356222	3300031545	Soil	MDRAARYRTKAKRARELADAAWQPDLQDALRSLATDYDEIAEDIERAAAEIRHAELLDE
Ga0318541_105887061	3300031545	Soil	MDRADHYRAKANNLRRLADAAWQPELKDRLHRLADDYDEIAEDIETGATQIRHPELLDS
Ga0318538_101978601	3300031546	Soil	MDRAAHYRDHANHARLLADAAWQLDLADMLRRLAEDYDERAECIETGAPEIRHADLSDDR
Ga0318573_104749781	3300031564	Soil	MDRAAHYRDKAKRARQLADAAWQPDLQDTLRTLAKDYDEIAEDIESGAPKIRHAELLGE
Ga0318573_106123981	3300031564	Soil	MDRAAHYREQANHARRLARAAWQLDLADMLRRLAKDYDKVAEDIEAGTT
Ga0310915_109425541	3300031573	Soil	MDLSDHYRDQANHARQLADATWQPDLEDFLRRLAKDYDETARDIEAGVTEVRHFELLP
Ga0318561_105293702	3300031679	Soil	MDRAAHYRDKAKRARQLADAAWQPDLQDTLRTLAKDYDEIAEDIESGAPEIRHAELLGE
Ga0318572_102430012	3300031681	Soil	MVCDGKCSEVMDGAAHYRNKAKRARQLADLAWQPDLQVTLRSLATDYDEIAEDIESGETEIRQAELIGD
Ga0318560_106601361	3300031682	Soil	AHCRQQADHARQLADAAWQPDLADMLRCIANDYDELAENIEAGATEPRGMIT
Ga0310686_1012831932	3300031708	Soil	MSFRRRCLQVMDRSAHYRDLANHARQLADATWQPNLENLLRHLAKDYDEIAGDIETGAIEIRHAEFPDL
Ga0318492_105607741	3300031748	Soil	MDRAAHYRDHANHARLLADAAWQLDLADMLRRLAEDYDERAECIETGAPEI
Ga0318494_105790591	3300031751	Soil	MDRAARYREQANHARRLARAAWQLDLADMLRRLAKDYDEVAEDIEAGATKIGHAELLL
Ga0307475_107407582	3300031754	Hardwood Forest Soil	MDRSAHYRDLANHARQLADATWQPNLEDLLRHLAKDYDEIAGDIETGAIEIRHAEFPDL
Ga0318537_101524331	3300031763	Soil	AHYRQQADHARQLADAAWQPDLADMLRCIANDYDELAENIEAGATEPRGMIT
Ga0318537_102270952	3300031763	Soil	MNRATHYRDQANHARLLADAAWQLDLADMLRRLAEDYDERAECIETGTPEIRYADLSDAR
Ga0318546_104702491	3300031771	Soil	REQANHARRLARAAWQLDLADMLRRLAKDYDEVAEDIEAGATKIGHAELLSRYP
Ga0318546_113338761	3300031771	Soil	YRNKAKRARQLADLAWQPDLQVTLRSLATDYDEIAEDIESGETEIRQAELIGD
Ga0318508_11320841	3300031780	Soil	DGKRSEGMDRAARYRTKAKRARELADAAWQPDLQDALRSLATDYDEIAEDIERAAAEIRHAELLDE
Ga0318548_103340871	3300031793	Soil	MDRAAHYREQANHARRLARAAWQLDLADMLRRLAKDYDEVAEDIEAGATEIGHAELLL
Ga0307473_103402171	3300031820	Hardwood Forest Soil	MDRAAYYPDRAEHIRRLADAAWQPGLKEALRRLANDYDQVVEDIEMGATEIRHNELL
Ga0307478_117752781	3300031823	Hardwood Forest Soil	KVMDRAAHYRDKANRALRLAEAAWQRELKDRLRSLAKDFDEIAEDIETGATEIRHPELLD
Ga0318495_102228981	3300031860	Soil	MDRAAHYREQANHARRLARAAWQLDLADMLRRLAKDYDEVAEDIEAGATKIGHAELLL
Ga0318544_102005182	3300031880	Soil	MDRAAHYREQANHARRLARAAWQLDLADMLRRLAKGYDKVAEDIEAGT
Ga0306925_109240271	3300031890	Soil	MDRAARYREQANHARRLARAAWQLDLADMLRHLAKDYDEVAEDIEAGATEI
Ga0306925_122055682	3300031890	Soil	MDLSAHYRDQANHARQLADATWQPDLEDFLRRLAKDYDETARDIEAGVTEVRHSELLP
Ga0318536_106711992	3300031893	Soil	MVLGRRCFAVMDRAAHYREQANHARRLARAAWQLDLADMLRRLAKDYDEVAEDIEAGATK
Ga0318520_100261081	3300031897	Soil	VMDRAARYRDQAKHARRLADATWQLDLADVLRSMAKDYDEVAEDIETGAIESRHAELLDR
Ga0306921_104215852	3300031912	Soil	EQANHARRLARAAWQLDLADMLRHLAKDYDEVAEDIEAGATEIGHAELLL
Ga0306921_111375141	3300031912	Soil	MDLSDHYRDQANHARQLADATWQPDLEDFLRRLAKDYDETARDIEAGVTEVRHSELLP
Ga0310912_103469383	3300031941	Soil	MDLSAHYRDQANHARQLADATWQPDLEDFLRRLAKDYDETARDIEAGVTEVRHFELLP
Ga0310916_105809302	3300031942	Soil	MDLSAHYRDQANHARQLADATWQPDLEDFLRRLAKDYDDTARDIEAGVTEVRHY
Ga0310910_111877861	3300031946	Soil	MERADHYRDRANHARKLSDAAWQLDLKDVLRGLAKDYDEVADDIENGATEIRHAE
Ga0318569_105639322	3300032010	Soil	EGMDRAARYRTKAKRARELADAAWQPDLQDALRSLATDYDEIAEDIERAAAEIRHAELLD
Ga0318559_102361682	3300032039	Soil	HANHARLLADAAWQLDLADMLRRLAEDYDERAECIETGAPEIRHADLSDDR
Ga0318545_100766463	3300032042	Soil	RRLARAAWQLDLADMLRRLAKDYDEVAEDIEAGATKIGHAELLSRYP
Ga0318545_101754911	3300032042	Soil	MDRADHYRAKANNLRRLADAAWQPELKDRLHRLADDYDEIAEDIETGAAQIRYPELLYS
Ga0318556_105632161	3300032043	Soil	MDRAAHYRDKAKRARQLADAAWQPDLQDTLRTLAKDYDEIAEDIESGAPKIRHA
Ga0306924_101633873	3300032076	Soil	AARYREQANHARRLARAAWQLDLADMLRHLAKDYDEVAEDIEAGATEIGHAELLL
Ga0307471_1008076922	3300032180	Hardwood Forest Soil	MDRAAYYRDRAEHIRRLADAAWQPELKEALRRLANDYDEVAEDIETGAPTIRHSELLYSNLPGQ
Ga0307471_1008449992	3300032180	Hardwood Forest Soil	MGMLFGWRCFELMDRAAYYRDRAERIRRLADAAWQPGLKEALRRLANDYDQVVEDIEMGATEIRHNELL
Ga0307471_1027815142	3300032180	Hardwood Forest Soil	MERAAHYRDKANRALRLAEAAWQPELKDRLRSLAKDYDEIAEDIETGATEIRHPELLDR
Ga0306920_1027004091	3300032261	Soil	MDRAAHYREQANHARRLARAAWQVDLADMLRRLVKDYDQVAEDIEAGSTEIGHAGFCSRY
Ga0310914_108679721	3300033289	Soil	MDRAARYREQANHARRLARAAWQLDLADMLRHLAKDYDEVAEDIEAGATEIGHAELLL
Ga0318519_101817932	3300033290	Soil	MDGAAHYRNKAKRARQLADLAWQPDLQVTLRSLATDYDEIAEDIESGETEIRQAELIGD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F061241

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences