Metagenome / Metatranscriptome Family F061226

Overview

Basic Information

• Family ID: F061226
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 132
• Average Sequence Length: 45 residues
• Representative Sequence: LNLAIRRALYDVSLAQLAGLDAPPARLPALEREMKAAAARTRLR
• Number of Associated Samples: 120
• Number of Associated Scaffolds: 132

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 0.00 %
• % of genes near scaffold ends (potentially truncated): 99.24 %
• % of genes from short scaffolds (< 2000 bps): 90.91 %
• Associated GOLD sequencing projects: 115
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (61.364 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (28.788 % of family members)
• Environment Ontology (ENVO): Unclassified (29.545 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (41.667 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 41.67%
  β-sheet: 0.00%
  Coil/Unstructured: 58.33%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 132 Family Scaffolds
PF01458	SUFBD	27.27
PF00005	ABC_tran	4.55
PF14528	LAGLIDADG_3	1.52
PF03313	SDH_alpha	0.76

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 132 Family Scaffolds
COG0719	Fe-S cluster assembly scaffold protein SufB	Posttranslational modification, protein turnover, chaperones [O]	27.27
COG1760	L-serine deaminase	Amino acid transport and metabolism [E]	0.76

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	38.64 %
Unclassified	root	N/A	61.36 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	38.64 %
Unclassified	root	N/A	61.36 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	38.64 %
Unclassified	root	N/A	61.36 %

Level 4

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.76 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	12.88 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.76 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	14.39 %
Unclassified	root	N/A	61.36 %

Level 5

Name	Rank	Taxonomy	Distribution
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.76 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.76 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	14.39 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	7.58 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.76 %
Unclassified	root	N/A	61.36 %

Level 6

Name	Rank	Taxonomy	Distribution
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.76 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.76 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	14.39 %
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	2.27 %
Unclassified	root	N/A	61.36 %
unclassified Planctomycetota	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota	0.76 %

Level 7

Name	Rank	Taxonomy	Distribution
Bacteroidia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia	0.76 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.76 %
Nostocales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales	14.39 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.76 %
Steroidobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae	2.27 %
Unclassified	root	N/A	61.36 %

Level 8

Name	Rank	Taxonomy	Distribution
Bacteroidales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	0.76 %
Hydrogenophaga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Hydrogenophaga	0.76 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.76 %
Steroidobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	2.27 %
Tolypothrichaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Tolypothrichaceae	14.39 %
Unclassified	root	N/A	61.36 %

Level 9

Name	Rank	Taxonomy	Distribution
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.76 %
Prevotellaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae	0.76 %
Steroidobacter denitrificans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	2.27 %
Tolypothrix	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Tolypothrichaceae → Tolypothrix	14.39 %
Unclassified	root	N/A	61.36 %
unclassified Hydrogenophaga	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Hydrogenophaga → unclassified Hydrogenophaga	0.76 %

Level 10

Name	Rank	Taxonomy	Distribution
Hydrogenophaga sp. T4	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Hydrogenophaga → unclassified Hydrogenophaga → Hydrogenophaga sp. T4	0.76 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.76 %
Prevotella	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella	0.76 %
Steroidobacter denitrificans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	2.27 %
Tolypothrix campylonemoides	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Tolypothrichaceae → Tolypothrix → Tolypothrix campylonemoides	14.39 %
Unclassified	root	N/A	61.36 %

Level 11

Name	Rank	Taxonomy	Distribution
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → environmental samples	0.76 %
Hydrogenophaga sp. T4	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Hydrogenophaga → unclassified Hydrogenophaga → Hydrogenophaga sp. T4	0.76 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.76 %
Steroidobacter denitrificans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	2.27 %
Tolypothrix campylonemoides VB511288	strain	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Tolypothrichaceae → Tolypothrix → Tolypothrix campylonemoides → Tolypothrix campylonemoides VB511288	14.39 %
Unclassified	root	N/A	61.36 %

Level 12

Name	Rank	Taxonomy	Distribution
Hydrogenophaga sp. T4	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Hydrogenophaga → unclassified Hydrogenophaga → Hydrogenophaga sp. T4	0.76 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.76 %
Prevotella sp. CAG:1124	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → environmental samples → Prevotella sp. CAG:1124	0.76 %
Steroidobacter denitrificans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	2.27 %
Tolypothrix campylonemoides VB511288	strain	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Tolypothrichaceae → Tolypothrix → Tolypothrix campylonemoides → Tolypothrix campylonemoides VB511288	14.39 %
Unclassified	root	N/A	61.36 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300001166|JGI12694J13545_1003043	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Tolypothrichaceae → Tolypothrix → Tolypothrix campylonemoides → Tolypothrix campylonemoides VB511288	2117
3300001867|JGI12627J18819_10372371	Not Available	579
3300004092|Ga0062389_101853851	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Tolypothrichaceae → Tolypothrix → Tolypothrix campylonemoides → Tolypothrix campylonemoides VB511288	782
3300004479|Ga0062595_100276046	All Organisms → cellular organisms → Bacteria	1113
3300004479|Ga0062595_102250519	All Organisms → cellular organisms → Bacteria → Proteobacteria	536
3300004633|Ga0066395_10671311	Not Available	613
3300005364|Ga0070673_101783693	Not Available	583
3300005439|Ga0070711_100573596	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Tolypothrichaceae → Tolypothrix → Tolypothrix campylonemoides → Tolypothrix campylonemoides VB511288	938
3300005467|Ga0070706_101704326	Not Available	574
3300005526|Ga0073909_10239476	Not Available	802

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	86.36%
Host-Associated	Host-Associated	13.64%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	3.79%
Arthropoda	Host-Associated → Arthropoda	0.76%
Plants	Host-Associated → Plants	12.88%
Terrestrial	Environmental → Terrestrial	82.58%

Category

Habitat	Taxonomy	Distribution
Digestive System	Host-Associated → Arthropoda → Digestive System	0.76%
Freshwater	Environmental → Aquatic → Freshwater	3.03%
Peat	Environmental → Terrestrial → Peat	1.52%
Plant Litter	Environmental → Terrestrial → Plant Litter	2.27%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.30%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.82%
Roots	Host-Associated → Plants → Roots	0.76%
Sediment	Environmental → Aquatic → Sediment	0.76%
Soil	Environmental → Terrestrial → Soil	78.79%

Type

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.55%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	0.76%
Loam	Environmental → Terrestrial → Soil → Loam	13.64%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.76%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.55%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	58.33%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	2.27%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.27%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.52%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.76%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.76%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	6.82%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.03%

Subtype

Habitat	Taxonomy	Distribution
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.03%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.82%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.76%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	38.64%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.82%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.27%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.27%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.76%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	14.39%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	6.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.55%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.55%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	2.27%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.27%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.52%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.76%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	0.76%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.76%

Habitat

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.52%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.76%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.76%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.76%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.27%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.76%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.82%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.76%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.03%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.52%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.27%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.76%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.03%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.76%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.76%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.52%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.76%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	2.27%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	28.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.30%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.03%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.27%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.52%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.76%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	3.03%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	4.55%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.52%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.76%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	0.76%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.52%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.06%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.27%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.27%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.52%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.76%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300001166	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2	Environmental
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12694J13545_10030431	3300001166	Forest Soil	VSLAQLAGLDAAPARLPALEREMKAVATRAPARS*
JGI12627J18819_103723711	3300001867	Forest Soil	RRALYDVSLAQLAGLDTPPGRLPTLEREMKAAAARTRLR*
Ga0062389_1018538511	3300004092	Bog Forest Soil	RVWQRLNLAIRRALYDISLAQLAGLDAPPARLPTLEREMKAAASRTPVRS*
Ga0062595_1002760462	3300004479	Soil	LAIRRSLNDVSLAQLAGLEAAPARLPTLEREMKAVGSRTPVRS*
Ga0062595_1022505191	3300004479	Soil	GQCEIEETCRVGRVWQRLNLAIRRALYDVTLAQLAGLDAPPARLPTLEREMKAAAARTPLRQRTEFNT*
Ga0066395_106713111	3300004633	Tropical Forest Soil	VWQRLNLAIRRALYDVSLAQLAGLDAAPARLPALEREMKAAATRTPVRS*
Ga0070673_1017836932	3300005364	Switchgrass Rhizosphere	RRSLNDVSLAQLAGLEAAPARLPTLEREMKAVGSRTPVRS*
Ga0070711_1005735961	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	VGRVWQRLNLAIRRALYDVTLAQLAGLDAPPARLPTLEREMKAAALRTRLR*
Ga0070706_1017043262	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	RLNLAIRRSLHDVSLAQLAGLDAAPARLPALERDMKAAAARPPVRS*
Ga0073909_102394762	3300005526	Surface Soil	WQRLNLAILRTLHDVSLAQLAGLDAPPARLATLEREMKAAAARTPLR*
Ga0070731_104865422	3300005538	Surface Soil	LYDVNLAQLAGLESAPARLPTLEREMKAGTRTPARS*
Ga0070695_1006932091	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	VWQRLNLAILRALHDVSLAQLAGLDAPPARLATLEREMKAAAARTPLR*
Ga0070665_1019330461	3300005548	Switchgrass Rhizosphere	KSCRVGHAWQRLNLTIRRSLHEVTLAQLAGIDQSQPRVLALERDMKAAAARAQSRSS*
Ga0070665_1023727852	3300005548	Switchgrass Rhizosphere	RRSLHEVSLAQLAGLAAEPPRVLALERDMKAAAARPLSRS*
Ga0068855_1025253581	3300005563	Corn Rhizosphere	RLNLAIRRSLYDVSLAQLAGIDPTQVTLPALERDMKAAATRAPVRA*
Ga0068857_1023175831	3300005577	Corn Rhizosphere	VGHAWQRLNLTIRRSLHEVSLAQLAGLAVEPPRVLALERDMKAAAARPLSRS*
Ga0070762_100706581	3300005602	Soil	SLNDVSLAQLAGLDAAPSRLPTLEREMKLAASRHPVRS*
Ga0066903_1055311502	3300005764	Tropical Forest Soil	LAMRRALYEVSLAQLAGLDATPARLPGLEREMKAAATRTQVRS*
Ga0066903_1072208271	3300005764	Tropical Forest Soil	LNLAIRRALYDVSLAQLAGLDAPPARLPSLERDMKAAASRTRVPS*
Ga0068863_1013593681	3300005841	Switchgrass Rhizosphere	HEVSLAQLAGIDQSTLRVLALERDMKAAAARAQSRST*
Ga0070766_113057901	3300005921	Soil	SLYDVSLAQLAGLEAAPARLPALEREMKAAASRTPVRA*
Ga0075018_107295001	3300006172	Watersheds	VWQRLNLAIRRALYDVSLAQLAGLDAAPARFMTLEREMKTVGTRPPSRT*
Ga0079220_115377902	3300006806	Agricultural Soil	EETCRVGRVWQRLNLAIRRSLYDVSLAQLAGIDPTQVTLPALERDMKAAATRTLVRS*
Ga0079219_115374791	3300006954	Agricultural Soil	NLTIRRSLHEVSLAQLAGLAAEPPRVLALERDMKAAAARPLSRS*
Ga0099793_105833571	3300007258	Vadose Zone Soil	LYEVSLAQLAGLEAAPARLPALEREMKAAAARAPVRS*
Ga0126380_102083212	3300010043	Tropical Forest Soil	RVRRVWQRLNLAIRRALYDVSLAQLAGLDAPPARLPALEREMKAAARTPLR*
Ga0123356_119921971	3300010049	Termite Gut	RLNLAIRRALYDVSLAQLAGLDAPPARLPTLERDMKAAATRTPFVSDRSHE*
Ga0134084_100922322	3300010322	Grasslands Soil	EVSLAQLAGLEAAPARLPALEREMKAAAARAPVRS*
Ga0074044_108084261	3300010343	Bog Forest Soil	CRVGRVWQRLNLAIRRALYDISLAQLAGLDAPPVRLPTLEREMKAAASRAPVRS*
Ga0126370_106932451	3300010358	Tropical Forest Soil	RVGRVWQRLNLAIRRALYDVSLAQLAGLDAPPARLATLEREMKAAGARTPLR*
Ga0126370_112552432	3300010358	Tropical Forest Soil	ALYDVSLAQLAGLDAPPARLPALEREMKAAARTPLR*
Ga0126379_111430442	3300010366	Tropical Forest Soil	NLAIRRALYEVSLAQLAGLDAPPARLATLEREMKAAGARTPVR*
Ga0134128_112260471	3300010373	Terrestrial Soil	RLNVTIRRSLHEVTLAQLAGLDVAQPRVLAHERDMKAAAARPVSRS*
Ga0126381_1014846722	3300010376	Tropical Forest Soil	RALYEVSLAQLAGLDAPPARLPALEREMKAAAARTPLRQERIQRNE*
Ga0126381_1030648791	3300010376	Tropical Forest Soil	GRVWQRLNLAIRRALYDVSLAQLAGLDSAPARLPSLERDMKAAASRTRASS*
Ga0126383_105768811	3300010398	Tropical Forest Soil	IRRALYEVSLAQLAGLDAPPARLATLEREMKAAGARTPVR*
Ga0134121_124480752	3300010401	Terrestrial Soil	FEKSCRVGHAWQRLNLTIRRSLHEVSLAQLAGIDQSSLRVLALERDMKAAAARAQSRST*
Ga0126369_131732902	3300012971	Tropical Forest Soil	SRVWQRLNLAMRRALYDVSLAQLAGLDAAPARLPGLEREMKAAATRTQVRS*
Ga0164304_103843052	3300012986	Soil	LNLAIRRSLNDVSLAQLAGLEAAPARLPTLEREMKAVGSRSPVRS*
Ga0157378_114498532	3300013297	Miscanthus Rhizosphere	QRLNLTIRRSLHEVSLAQLAGLAAEPPRVLALERDMKAAAARPLSRS*
Ga0157372_123171762	3300013307	Corn Rhizosphere	LYEISLAQLAGIDATQVRLPALEREMKITASRAPVR*
Ga0163163_127257562	3300014325	Switchgrass Rhizosphere	GHAWQRLNLTIRRSLHEVSLAQLAGIDQSTLRVLALERDMKAAAARAQSRST*
Ga0137420_11106652	3300015054	Vadose Zone Soil	SLYEVSLAQLAGLDAAPARLPALEREMKAAAARAPVRS*
Ga0132255_1024872822	3300015374	Arabidopsis Rhizosphere	LNDVSLAQLAGLEAAPARLPTLEREMKAVGSRTPVRS*
Ga0182041_110000002	3300016294	Soil	RRALYEVSLAQLAGLDAPPARLPALEREMKAAAARSPLR
Ga0182040_113343022	3300016387	Soil	VWQRLNLAIRRALYDVSLAQLAGLDAPPARLPALEREMKAAAARTRLR
Ga0182038_118444331	3300016445	Soil	ALYDVSLAQLAGLDAPPARLPALEREMKAAAARTRLR
Ga0187824_103021482	3300017927	Freshwater Sediment	DIAPTLAQLAGLEGAPARLPALEREMKAAASRAPAR
Ga0187825_101909021	3300017930	Freshwater Sediment	SRVWQRLNLAMRRALYDVSLAQLAGLDAAPARLPALEREMKAAAGRTQARS
Ga0187785_102592841	3300017947	Tropical Peatland	EIEETCRVGRVWQRLNLAIRRALYEVTLAQLAGLDAPPARLPTLEREMKSAALRTRLR
Ga0187779_111888801	3300017959	Tropical Peatland	LNLAIRRGLYDVSLAQLAGLDAAPSRLPALEREMKAAAGRSPARS
Ga0187805_104572901	3300018007	Freshwater Sediment	ALYEVSLAQLAGLDAAPARLPALEREMKSVASRAPLR
Ga0187769_101089603	3300018086	Tropical Peatland	RALYDVSLAQLAGLDAAPARLPALEREMKAAAGRTPARS
Ga0187794_16408052	3300019273	Peatland	RVWQRLNLAMRRALYDVSLAQLAGLDTTPARLPGLEREMKAAAGRTQVRS
Ga0206355_14315841	3300020076	Corn, Switchgrass And Miscanthus Rhizosphere	IEETCRVGRVWQRLNLAIRRSLYDVSLAQLAGIDTTHLALPALERDLKAAATRAPVRP
Ga0210406_108870351	3300021168	Soil	EIEETCRVGRVWQRLNLAIRRSLYDVSLAQLAGIDSSHVRLPALEREVKLATPRTPVRS
Ga0210405_102991211	3300021171	Soil	ETCRVSRVWQRLNLAIRRALYDVSLAQLAGLEGAPTRLPTLERDMKAAGRAPVRS
Ga0210405_110412921	3300021171	Soil	RLNLAIRRSLYDVSLAQLAGLEAAPARLPALEREMKAAASRTPVRA
Ga0210385_104868721	3300021402	Soil	CRVSRVWQRLNLAIRRALYDVSLAQLAGLEGAPTRLPTLERDMKAAAGRAPVRS
Ga0210394_102497841	3300021420	Soil	VSRVWQRLSLALRRGLYDVSLAQLAGLDAVPARLPALEREMKAAASRTQARS
Ga0242656_10243611	3300022525	Soil	SLYEVSLAQLAGLDAAPARLPALEREMKAAAARAPVRS
Ga0247768_10556692	3300022910	Plant Litter	EVSLAQLAGIDHSQPRVLALERDMKAAAARAQSRSS
Ga0247777_10327193	3300022917	Plant Litter	GHAWQRLNVTIRRSLREVSLAQLAGFDSNQPRVLALERDMKAAAARAQSRS
Ga0247762_10865152	3300023169	Plant Litter	GYEKSCRVGHAWQRLNLTIRRSLHEVSLAQLAGIDASQPRVLALERDMKAAAARAQSRS
Ga0207685_107016392	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	GHGQCEIEETCRVGRVWQRLNLAIRRALYDVTLAQLAGLDAPPARLPTLEREMKAAALRTRLR
Ga0207699_101342381	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	RVWQRLNLAIRRSLNDVSLAQLAGLEAAPARLPTLEREMKAVGSRTPVRS
Ga0207684_113835641	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	RLNLAIRRSLHDVSLAQLAGLDAAPARLPALERDMKAAAARPPVRS
Ga0207693_107819852	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	LNLAILRALHDVSLAQLAGLDAPPARLATLEREMKAAAARTPLR
Ga0207700_101158893	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	TVSLAQLAGLEAAPARLPTLEREMKAVGSRTPVRS
Ga0207644_100787141	3300025931	Switchgrass Rhizosphere	AIRRSLNDVSLAQLAGLEAAPARLPTLEREMKAVGSRTPVRS
Ga0207665_105188992	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	TCRVGRVWQRLNLAIRRALYDVTLAQLAGLDAPPARLPTLEREMKAAALRTPLR
Ga0207689_111475792	3300025942	Miscanthus Rhizosphere	LHEVSLAQLAGIDQSTLRVLALERDMKAAAARAQSRST
Ga0207640_120050882	3300025981	Corn Rhizosphere	SLHEVSLAQLAGLDPTQPRVLAHERDMKAAAARPVSRS
Ga0209473_13305581	3300026330	Soil	NLAFRRSLYEVSLAQLAGLEAAPARLPALEREMKAAARS
Ga0209158_11750542	3300026333	Soil	RALYDVSLAQLAGLDAAPARLPALEREMKAAASRAPSRS
Ga0209156_103814612	3300026547	Soil	VWQRLNLAIRRALYDVSLAQLAGLDAAPARLPALEREMKAAAARAPSRS
Ga0208241_10149842	3300027297	Forest Soil	LAIRRALYDVTLAQLAGIDAAPARLPALEREMKAAAGRVPAR
Ga0208984_10257991	3300027546	Forest Soil	LNLAFRRSLYEVSLAQLAGLDAPPARLPALEREMKVAAARAPVRS
Ga0209811_100110632	3300027821	Surface Soil	VWQRLNLAIRRSLNDVSLAQLAGLEAAPARLPTLEREMKAVGSRTPVRS
Ga0209167_102497501	3300027867	Surface Soil	IRRSLHEVSLAQLAGLDVAPVRWPTLEREMKAAAVRPPVRS
Ga0268266_105766791	3300028379	Switchgrass Rhizosphere	LNLAIRRSLNDVSLAQLAGLEAAPARLPTLEREMKAVGSRTPVRS
Ga0268266_118387532	3300028379	Switchgrass Rhizosphere	LTIRRSLHEVSLAQLAGLAAEPPRVLALERDMKAAAARPLSRS
Ga0268265_115722581	3300028380	Switchgrass Rhizosphere	CRVGHAWQRLNLTIRRSLHEVSLAQLAGLAAEPPRVLALERDMKAAASRPLSRS
Ga0302184_102711302	3300030490	Palsa	RRALYDVSLAQLAGLDAVPARLPTLEREMKAATSRPPART
Ga0311356_114592982	3300030617	Palsa	CRVGRVWQRLNLAIRRALYDVSLAQLAGLDAPPARLPTLEREMKSAASRTPARS
Ga0170824_1017417082	3300031231	Forest Soil	DVSLAQLAGLEAAPARLPALEREMKAAASRTAVRA
Ga0170824_1058349461	3300031231	Forest Soil	GRVWQRLNLAIRKSLYDITLAQLAGIDTTLIDSPQAPLPALEREMKAVASTRAPVR
Ga0318573_100995232	3300031564	Soil	GRVWQRLNLAIRRALYDVSLAQLAGLDAPPARLPALEREMKAAATRTRLR
Ga0310915_109253401	3300031573	Soil	GQCDIEESCRVGRVWQRLNLAIRRALYEVTLAQLAGLDAPPARLPALEREMKAAATRTPL
Ga0307483_10113851	3300031590	Hardwood Forest Soil	GSCRVSRVWQRLNLAIRRALYDVSLAQLAGLDAAPARLPALEREMKAAASRAPARS
Ga0318555_107189661	3300031640	Soil	VGRVWQRLNLAIRRALYEVTLAQLAGLDAPPARLPALEREMKAAATRTPLR
Ga0318561_105474001	3300031679	Soil	YEVSLAQLAGLDAPPARLPALEREMKAAAARNPLR
Ga0318574_103779281	3300031680	Soil	NLAIRRALYDVSLAQLAGLDAPPARLPALEREMKAAAARTRLR
Ga0318496_100359354	3300031713	Soil	VWQRLNLAIRRALYEVTLAQLAGLDAPPARLPALEREMKAAATRTPLR
Ga0307474_100992383	3300031718	Hardwood Forest Soil	LNLAIRRALYDVSLAQLAGLDAPPARLPTLERDMKAAARTPVRS
Ga0318493_101076852	3300031723	Soil	AMRRALYEVSLAQLAGLDAPPARLPALEREMKAAAARSPLR
Ga0318502_100984841	3300031747	Soil	ALYEVSLAQLAGLDAPPARLPALEREMKAAAARNPLR
Ga0318494_105727121	3300031751	Soil	RALYEVSLAQLAGLDAPPARLPALEREMKAAAARSPLR
Ga0318537_100477302	3300031763	Soil	ALYDVSLAQLAGLDAPPARLTALEREMKAAATRTPLR
Ga0318526_103728842	3300031769	Soil	QRLNLAIRRALYDVSLAQLAGLDAPPARLTALEREMKAAATRTPLR
Ga0318546_107312992	3300031771	Soil	LNLAIRRALYDVSLAQLAGLDAAPARLPSLERDMKAAAARTRLR
Ga0318566_100143754	3300031779	Soil	LYEVSLAQLAGLDAPPARLPALEREMKAAAARSPLR
Ga0318547_106635091	3300031781	Soil	ALYDVSLAQLAGLDTAPARLPSLERDMKAAASRTRVSS
Ga0318523_100894722	3300031798	Soil	YEVSLAQLAGLDAPPARLPALEREMKAAGARSPLR
Ga0318497_108225281	3300031805	Soil	RVGRVWQRLNLAIRRALYDVSLAQLAGLDAAPARLPSLEREMKAAAVRTPLR
Ga0318568_105887862	3300031819	Soil	IRRALYDVSLAQLAGLDAPPARLATLEREMKAAAARTPVR
Ga0310917_105433162	3300031833	Soil	NLAIRRALYDVSLAQLAGLDAAPARLPSLERDMKAAAARTRLR
Ga0318512_100925823	3300031846	Soil	LYDVSLAQLAGLDAPPARLPALEREMKAAAARTRLR
Ga0306925_100177871	3300031890	Soil	LNLAIRRALYDVSLAQLAGLDAPPARLTALEREMKAAATRTPLR
Ga0306925_105438461	3300031890	Soil	ALYDVSLAQLAGLDAAPARLPSLEREMKAAAVRTPLR
Ga0306923_113422731	3300031910	Soil	RALYDVSLAQLAGLDAPPARLPALEREMKAAAARTRLR
Ga0310912_100908361	3300031941	Soil	LNLAIRRALYDVSLAQLAGLDAPPARLPALEREMKAAAARTRLR
Ga0310912_102755972	3300031941	Soil	RALYEVSLAQLAGLDAPPARLPALEREMKAAAARNPLR
Ga0307479_103419022	3300031962	Hardwood Forest Soil	RRALYDVSLAQLAGIDAAPARLPALEREMKAAAGRTQARS
Ga0318531_101855482	3300031981	Soil	YEVSLAQLAGLDAPPARLPALEREMKAAAARSPLR
Ga0318569_100652181	3300032010	Soil	YDVSLAQLAGLDAPPARLPALEREMKAAATRTRLR
Ga0310911_101922272	3300032035	Soil	ALYEVSLAQLAGLDAPPARLPALEREMKAAAARTPVR
Ga0318532_100357862	3300032051	Soil	IRRALYDVSLAQLAGLDAPPARLTALEREMKAAATRTPLR
Ga0318532_101592952	3300032051	Soil	VGRVWQRLNLAIRRALYDVSLAQLAGLDAAPARLPSLERDMKAAAARTRLR
Ga0318506_100529271	3300032052	Soil	CDIEESCRVGRVWQRLNLAIRRALYEVTLAQLAGLDAPPARLPALEREMKAAATRTPLR
Ga0318504_104631542	3300032063	Soil	IRRALYDVSLAQLAGLDAAPARLPSLEREMKAAAVRTPLR
Ga0318510_101745882	3300032064	Soil	WQRLNLAIRRALYDVSLAQLAGLDAPPARLPALEREMKAAATRTRLR
Ga0318514_100217341	3300032066	Soil	RALYEVTLAQLAGLDAPPARLPALEREMKAAATRTPLR
Ga0318514_105471031	3300032066	Soil	LYDVSLAQLAGLDAPPARLATLEREMKAAAARTPVR
Ga0306924_106600242	3300032076	Soil	RLNLAIRRALYDVSLAQLAGLDAAPARLPSLEREMKAAAVRTPLR
Ga0318518_104626192	3300032090	Soil	YEVTLAQLAGLDAPPARLPALEREMKAAATRTPLR
Ga0307415_1024660122	3300032126	Rhizosphere	LTIRRSLHEVSLAQLAGLDASQPRVLALERDMKAAAARAQSRS
Ga0307471_1005613332	3300032180	Hardwood Forest Soil	GRVWQRLNLAILRALHDVSLAQLAGLDAPPARLATLEREMKAAAARTPLR
Ga0335074_105363821	3300032895	Soil	LNLAIRRSLYDVSLAQLAGIDTTQVTLPALERDMKAAAARTPVRS
Ga0335072_101388941	3300032898	Soil	HGNCEIEESCRVSRVWQRLNLAIRRALYDVTLAQLAGLEGAPARLPALEREMKAAASRAPAR
Ga0335076_104102651	3300032955	Soil	GNCEIEESCRVSRVWQRLNLAIRRALYDVTLAQLAGLEGAPARLPALEREMKAAASRAPA
Ga0335073_101780912	3300033134	Soil	HDVSLAQLAGIDPTQVTLPALERDMKAAATRTPIRS