Metagenome Family F061189

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F061189
Family Type	Metagenome
Number of Sequences	132
Average Sequence Length	50 residues
Representative Sequence	AGDTWHQRTVIQPTSADTMTATSYLSFGTVPEWKGVEIKYTRRIK
Number of Associated Samples	107
Number of Associated Scaffolds	132

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	9.30 %
% of genes near scaffold ends (potentially truncated)	86.36 %
% of genes from short scaffolds (< 2000 bps)	93.94 %
Associated GOLD sequencing projects	97
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.67

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (62.879 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (6.818 % of family members)
Environment Ontology (ENVO)	Unclassified (46.970 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (56.818 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 38.36% Coil/Unstructured: 61.64%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.67
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.67
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 132 Family Scaffolds
PF01872	RibD_C	4.55
PF04993	TfoX_N	4.55
PF01022	HTH_5	3.79
PF00106	adh_short	3.79
PF12704	MacB_PCD	3.03
PF00232	Glyco_hydro_1	2.27
PF06134	RhaA	2.27
PF07676	PD40	2.27
PF13424	TPR_12	2.27
PF02687	FtsX	1.52
PF07883	Cupin_2	1.52
PF13740	ACT_6	1.52
PF07617	DUF1579	1.52
PF13840	ACT_7	0.76
PF07592	DDE_Tnp_ISAZ013	0.76
PF01261	AP_endonuc_2	0.76
PF13450	NAD_binding_8	0.76
PF07638	Sigma70_ECF	0.76
PF00246	Peptidase_M14	0.76
PF13505	OMP_b-brl	0.76
PF02550	AcetylCoA_hydro	0.76
PF04717	Phage_base_V	0.76
PF00326	Peptidase_S9	0.76
PF12867	DinB_2	0.76
PF01425	Amidase	0.76
PF07519	Tannase	0.76
PF00141	peroxidase	0.76
PF04389	Peptidase_M28	0.76
PF04072	LCM	0.76
PF13594	Obsolete Pfam Family	0.76
PF08818	DUF1801	0.76
PF07075	DUF1343	0.76
PF13532	2OG-FeII_Oxy_2	0.76
PF13472	Lipase_GDSL_2	0.76
PF06713	bPH_4	0.76
PF08281	Sigma70_r4_2	0.76
PF13474	SnoaL_3	0.76
PF03551	PadR	0.76
PF13857	Ank_5	0.76
PF03449	GreA_GreB_N	0.76
PF01177	Asp_Glu_race	0.76
PF13847	Methyltransf_31	0.76

COG ID	Name	Functional Category	% Frequency in 132 Family Scaffolds
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	4.55
COG3070	Transcriptional regulator of competence genes, TfoX/Sxy family	Transcription [K]	4.55
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	4.55
COG2723	Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase	Carbohydrate transport and metabolism [G]	2.27
COG4806	L-rhamnose isomerase	Carbohydrate transport and metabolism [G]	2.27
COG0427	Propionyl CoA:succinate CoA transferase	Energy production and conversion [C]	0.76
COG0782	Transcription elongation factor, GreA/GreB family	Transcription [K]	0.76
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.76
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.76
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.76
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.76
COG0376	Catalase (peroxidase I)	Inorganic ion transport and metabolism [P]	0.76
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.76
COG3315	O-Methyltransferase involved in polyketide biosynthesis	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.76
COG3876	Exo-beta-N-acetylmuramidase YbbC/NamZ, DUF1343 family	Cell wall/membrane/envelope biogenesis [M]	0.76
COG4430	Uncharacterized conserved protein YdeI, YjbR/CyaY-like superfamily, DUF1801 family	Function unknown [S]	0.76
COG4540	Phage P2 baseplate assembly protein gpV	Mobilome: prophages, transposons [X]	0.76
COG5646	Iron-binding protein Fra/YdhG, frataxin family (Fe-S cluster biosynthesis)	Posttranslational modification, protein turnover, chaperones [O]	0.76
COG5649	Uncharacterized conserved protein, DUF1801 domain	Function unknown [S]	0.76

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	63.64 %
Unclassified	root	N/A	36.36 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	63.64 %
Unclassified	root	N/A	36.36 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	62.88 %
Unclassified	root	N/A	36.36 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.36 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	18.94 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	3.79 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.79 %
Synergistetes	phylum	All Organisms → cellular organisms → Bacteria → Synergistetes	1.52 %
Sar	clade	All Organisms → cellular organisms → Eukaryota → Sar	0.76 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.36 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	12.88 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	3.79 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.27 %
Synergistia	class	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia	1.52 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.52 %
Alveolata	clade	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata	0.76 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → environmental samples	0.76 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.36 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.12 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	3.79 %
Synergistales	order	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales	1.52 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	1.52 %
Caulobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales	1.52 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.76 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	0.76 %
uncultured Acidobacteria bacterium HF4000_26D02	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → environmental samples → uncultured Acidobacteria bacterium HF4000_26D02	0.76 %
Dinophyceae	class	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.36 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.12 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	3.79 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	1.52 %
Synergistaceae	family	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → Synergistaceae	1.52 %
Caulobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae	1.52 %
Motilibacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Motilibacterales	0.76 %
Suessiales	order	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	0.76 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	0.76 %
uncultured Acidobacteria bacterium HF4000_26D02	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → environmental samples → uncultured Acidobacteria bacterium HF4000_26D02	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.36 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.12 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	3.79 %
Cloacibacillus	genus	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → Synergistaceae → Cloacibacillus	1.52 %
Caulobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Caulobacter	1.52 %
Vallicoccaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Motilibacterales → Vallicoccaceae	0.76 %
Candidatus Sulfopaludibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter	0.76 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	0.76 %
Symbiodiniaceae	family	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae	0.76 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	0.76 %
uncultured Acidobacteria bacterium HF4000_26D02	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → environmental samples → uncultured Acidobacteria bacterium HF4000_26D02	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.36 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.12 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	3.79 %
Cloacibacillus	genus	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → Synergistaceae → Cloacibacillus	1.52 %
Caulobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Caulobacter	1.52 %
Vallicoccus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Motilibacterales → Vallicoccaceae → Vallicoccus	0.76 %
unclassified Candidatus Sulfopaludibacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter	0.76 %
Symbiodinium	genus	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	0.76 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	0.76 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	0.76 %
uncultured Acidobacteria bacterium HF4000_26D02	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → environmental samples → uncultured Acidobacteria bacterium HF4000_26D02	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.36 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.12 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	3.79 %
Cloacibacillus	genus	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → Synergistaceae → Cloacibacillus	1.52 %
Caulobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Caulobacter	1.52 %
Vallicoccus soli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Motilibacterales → Vallicoccaceae → Vallicoccus → Vallicoccus soli	0.76 %
Candidatus Sulfopaludibacter sp. SbA3	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA3	0.76 %
Symbiodinium	genus	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	0.76 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	0.76 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	0.76 %
uncultured Acidobacteria bacterium HF4000_26D02	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → environmental samples → uncultured Acidobacteria bacterium HF4000_26D02	0.76 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459009\|GA8DASG01ASRDO	All Organisms → cellular organisms → Bacteria → Acidobacteria	503	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_105141539	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300004114\|Ga0062593_101542031	Not Available	718	Open in IMG/M
3300004114\|Ga0062593_102591713	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300004114\|Ga0062593_102964039	Not Available	543	Open in IMG/M
3300004153\|Ga0063455_100780931	All Organisms → cellular organisms → Bacteria	658	Open in IMG/M
3300004153\|Ga0063455_100937770	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Motilibacterales → Vallicoccaceae → Vallicoccus → Vallicoccus soli	618	Open in IMG/M
3300004157\|Ga0062590_100861909	Not Available	842	Open in IMG/M
3300004480\|Ga0062592_102391832	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	530	Open in IMG/M
3300005093\|Ga0062594_100049322	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2138	Open in IMG/M
3300005162\|Ga0066814_10040433	Not Available	735	Open in IMG/M
3300005330\|Ga0070690_100422802	All Organisms → cellular organisms → Bacteria	983	Open in IMG/M
3300005332\|Ga0066388_100999919	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	1401	Open in IMG/M
3300005333\|Ga0070677_10646333	Not Available	590	Open in IMG/M
3300005354\|Ga0070675_100454641	All Organisms → cellular organisms → Bacteria	1149	Open in IMG/M
3300005354\|Ga0070675_101211198	Not Available	695	Open in IMG/M
3300005365\|Ga0070688_100852097	All Organisms → cellular organisms → Bacteria	716	Open in IMG/M
3300005366\|Ga0070659_100201887	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1637	Open in IMG/M
3300005367\|Ga0070667_101455022	Not Available	643	Open in IMG/M
3300005434\|Ga0070709_10351867	All Organisms → cellular organisms → Bacteria → Acidobacteria	1089	Open in IMG/M
3300005444\|Ga0070694_101255115	All Organisms → cellular organisms → Bacteria	622	Open in IMG/M
3300005455\|Ga0070663_100735598	Not Available	841	Open in IMG/M
3300005456\|Ga0070678_101244758	Not Available	691	Open in IMG/M
3300005456\|Ga0070678_101726440	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	589	Open in IMG/M
3300005526\|Ga0073909_10339264	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	693	Open in IMG/M
3300005547\|Ga0070693_100916997	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	657	Open in IMG/M
3300005564\|Ga0070664_101437341	Not Available	652	Open in IMG/M
3300005617\|Ga0068859_100530163	All Organisms → cellular organisms → Bacteria	1272	Open in IMG/M
3300005618\|Ga0068864_100067887	All Organisms → cellular organisms → Bacteria → Proteobacteria	3097	Open in IMG/M
3300005618\|Ga0068864_101605314	Not Available	654	Open in IMG/M
3300005618\|Ga0068864_101881354	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300005713\|Ga0066905_102151732	Not Available	519	Open in IMG/M
3300005764\|Ga0066903_102131081	All Organisms → cellular organisms → Bacteria	1080	Open in IMG/M
3300005764\|Ga0066903_106063719	All Organisms → cellular organisms → Bacteria	633	Open in IMG/M
3300006046\|Ga0066652_101350470	All Organisms → cellular organisms → Bacteria	670	Open in IMG/M
3300006173\|Ga0070716_101146195	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	622	Open in IMG/M
3300006196\|Ga0075422_10358183	All Organisms → cellular organisms → Bacteria	637	Open in IMG/M
3300006237\|Ga0097621_101331160	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	679	Open in IMG/M
3300006755\|Ga0079222_10670507	All Organisms → cellular organisms → Bacteria	812	Open in IMG/M
3300006797\|Ga0066659_11237256	Not Available	623	Open in IMG/M
3300006852\|Ga0075433_10082716	All Organisms → cellular organisms → Bacteria	2832	Open in IMG/M
3300006852\|Ga0075433_10168872	All Organisms → cellular organisms → Bacteria	1947	Open in IMG/M
3300006854\|Ga0075425_101267595	Not Available	836	Open in IMG/M
3300006854\|Ga0075425_101391713	All Organisms → cellular organisms → Bacteria	794	Open in IMG/M
3300006871\|Ga0075434_100311593	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1594	Open in IMG/M
3300006871\|Ga0075434_102477301	Not Available	520	Open in IMG/M
3300006954\|Ga0079219_11564971	Not Available	601	Open in IMG/M
3300009090\|Ga0099827_11534302	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	580	Open in IMG/M
3300009094\|Ga0111539_10325724	All Organisms → cellular organisms → Bacteria	1788	Open in IMG/M
3300009098\|Ga0105245_10277797	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1636	Open in IMG/M
3300009100\|Ga0075418_11552444	All Organisms → cellular organisms → Bacteria	719	Open in IMG/M
3300009101\|Ga0105247_11754632	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → Synergistaceae → Cloacibacillus	515	Open in IMG/M
3300009148\|Ga0105243_12559557	All Organisms → cellular organisms → Bacteria → Proteobacteria	550	Open in IMG/M
3300009174\|Ga0105241_10576157	All Organisms → cellular organisms → Bacteria	1014	Open in IMG/M
3300009176\|Ga0105242_10647160	All Organisms → cellular organisms → Bacteria	1027	Open in IMG/M
3300009176\|Ga0105242_11064469	All Organisms → cellular organisms → Bacteria	821	Open in IMG/M
3300009176\|Ga0105242_11923894	Not Available	632	Open in IMG/M
3300009545\|Ga0105237_10881433	Not Available	902	Open in IMG/M
3300009553\|Ga0105249_12568523	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	582	Open in IMG/M
3300010362\|Ga0126377_11783018	Not Available	691	Open in IMG/M
3300010375\|Ga0105239_10344112	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1683	Open in IMG/M
3300010379\|Ga0136449_100676653	Not Available	1737	Open in IMG/M
3300010391\|Ga0136847_10816611	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300010396\|Ga0134126_12063245	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	623	Open in IMG/M
3300010401\|Ga0134121_10279012	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1472	Open in IMG/M
3300010401\|Ga0134121_11436857	All Organisms → cellular organisms → Bacteria	702	Open in IMG/M
3300011119\|Ga0105246_11378071	All Organisms → cellular organisms → Bacteria	657	Open in IMG/M
3300012199\|Ga0137383_10902079	Not Available	645	Open in IMG/M
3300012208\|Ga0137376_11774273	All Organisms → cellular organisms → Bacteria → Acidobacteria → environmental samples → uncultured Acidobacteria bacterium HF4000_26D02	508	Open in IMG/M
3300012212\|Ga0150985_103827650	All Organisms → cellular organisms → Bacteria	775	Open in IMG/M
3300012923\|Ga0137359_10944156	Not Available	742	Open in IMG/M
3300012929\|Ga0137404_11268103	Not Available	679	Open in IMG/M
3300012948\|Ga0126375_11464476	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	582	Open in IMG/M
3300012957\|Ga0164303_11303334	All Organisms → cellular organisms → Bacteria → Acidobacteria	537	Open in IMG/M
3300012988\|Ga0164306_10761593	Not Available	776	Open in IMG/M
3300013307\|Ga0157372_13193420	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	523	Open in IMG/M
3300013308\|Ga0157375_12521473	All Organisms → cellular organisms → Bacteria	614	Open in IMG/M
3300014326\|Ga0157380_13057764	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300014326\|Ga0157380_13387775	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	510	Open in IMG/M
3300015371\|Ga0132258_12476544	Not Available	1299	Open in IMG/M
3300015372\|Ga0132256_102322089	Not Available	640	Open in IMG/M
3300015374\|Ga0132255_101018399	Not Available	1243	Open in IMG/M
3300015374\|Ga0132255_101139204	All Organisms → cellular organisms → Bacteria	1173	Open in IMG/M
3300015374\|Ga0132255_102927984	All Organisms → cellular organisms → Bacteria	729	Open in IMG/M
3300015374\|Ga0132255_105388753	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300018042\|Ga0187871_10294189	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA3	899	Open in IMG/M
3300018047\|Ga0187859_10265464	All Organisms → cellular organisms → Bacteria	924	Open in IMG/M
3300018433\|Ga0066667_11398676	Not Available	614	Open in IMG/M
3300021420\|Ga0210394_10190366	All Organisms → cellular organisms → Bacteria	1788	Open in IMG/M
3300025926\|Ga0207659_11129615	All Organisms → cellular organisms → Bacteria	674	Open in IMG/M
3300025932\|Ga0207690_10205475	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1499	Open in IMG/M
3300025934\|Ga0207686_10330858	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1141	Open in IMG/M
3300025934\|Ga0207686_11251473	Not Available	608	Open in IMG/M
3300025936\|Ga0207670_10748527	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	811	Open in IMG/M
3300025945\|Ga0207679_10918284	Not Available	801	Open in IMG/M
3300025961\|Ga0207712_11784101	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → Synergistaceae → Cloacibacillus	551	Open in IMG/M
3300025981\|Ga0207640_11423265	All Organisms → cellular organisms → Bacteria	621	Open in IMG/M
3300025981\|Ga0207640_12106597	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
3300025986\|Ga0207658_10146642	Not Available	1918	Open in IMG/M
3300026023\|Ga0207677_10124105	Not Available	1948	Open in IMG/M
3300026023\|Ga0207677_11272980	Not Available	675	Open in IMG/M
3300026035\|Ga0207703_11856451	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
3300026088\|Ga0207641_10515221	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Caulobacter	1163	Open in IMG/M
3300026095\|Ga0207676_10150954	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2001	Open in IMG/M
3300026095\|Ga0207676_11723063	All Organisms → cellular organisms → Bacteria	625	Open in IMG/M
3300026095\|Ga0207676_12472404	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300027821\|Ga0209811_10258365	Not Available	666	Open in IMG/M
3300031231\|Ga0170824_120411923	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	574	Open in IMG/M
3300031234\|Ga0302325_11396893	Not Available	911	Open in IMG/M
3300031366\|Ga0307506_10274311	All Organisms → cellular organisms → Bacteria	650	Open in IMG/M
3300031474\|Ga0170818_110831061	Not Available	618	Open in IMG/M
3300031668\|Ga0318542_10162178	Not Available	1115	Open in IMG/M
3300031716\|Ga0310813_10740330	Not Available	881	Open in IMG/M
3300031716\|Ga0310813_11676755	All Organisms → cellular organisms → Bacteria	595	Open in IMG/M
3300031879\|Ga0306919_10997854	Not Available	640	Open in IMG/M
3300031910\|Ga0306923_10516026	All Organisms → cellular organisms → Bacteria → Acidobacteria	1350	Open in IMG/M
3300031912\|Ga0306921_10622182	All Organisms → cellular organisms → Bacteria	1247	Open in IMG/M
3300031940\|Ga0310901_10495297	All Organisms → cellular organisms → Bacteria	547	Open in IMG/M
3300032001\|Ga0306922_11809017	Not Available	601	Open in IMG/M
3300032039\|Ga0318559_10449528	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300032044\|Ga0318558_10578064	Not Available	561	Open in IMG/M
3300032075\|Ga0310890_10977248	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	680	Open in IMG/M
3300032089\|Ga0318525_10563597	Not Available	582	Open in IMG/M
3300032421\|Ga0310812_10306095	Not Available	707	Open in IMG/M
3300032770\|Ga0335085_11634362	Not Available	666	Open in IMG/M
3300032782\|Ga0335082_10345281	All Organisms → cellular organisms → Bacteria → Acidobacteria	1357	Open in IMG/M
3300032828\|Ga0335080_11884115	Not Available	582	Open in IMG/M
3300033412\|Ga0310810_10001853	All Organisms → cellular organisms → Bacteria	22409	Open in IMG/M
3300033475\|Ga0310811_10651865	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Caulobacter	1037	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	53.03%
Host-Associated	Host-Associated	46.97%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	50.76%
Plants	Host-Associated → Plants	46.97%
Aquatic	Environmental → Aquatic	2.27%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	50.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere	29.55%
Rhizoplane	Host-Associated → Plants → Rhizoplane	15.91%
Freshwater	Environmental → Aquatic → Freshwater	2.27%
Roots	Host-Associated → Plants → Roots	1.52%
Peat	Environmental → Terrestrial → Peat	0.76%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	37.12%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	20.45%
Loam	Environmental → Terrestrial → Soil → Loam	10.61%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	9.85%
Soil	Host-Associated → Plants → Rhizosphere → Soil	9.09%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.55%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.27%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.52%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.52%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.52%
Lake	Environmental → Aquatic → Freshwater → Lake	0.76%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.76%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	20.45%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	9.85%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	9.09%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	9.09%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.06%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.06%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.55%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.79%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.03%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.27%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.52%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.52%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.52%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.52%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.52%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.76%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.76%

Habitat	Taxonomy	Distribution
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	6.82%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	6.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.06%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	6.06%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.55%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.79%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.79%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.79%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	3.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.03%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.03%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	3.03%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.27%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.27%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.27%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.27%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.27%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.27%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.52%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.52%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.52%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.52%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.52%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.52%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.52%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.52%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.52%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	1.52%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.52%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.52%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment	0.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.76%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.76%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.76%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.76%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.76%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.76%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.76%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.76%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.76%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459009	Grass soil microbial communities from Rothamsted Park, UK - July 2009 indirect DNA Tissue lysis 0-10cm	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005162	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010391	Freshwater sediment microbial communities from Lake Superior, USA - Station SU-17. Combined Assembly of Gp0155404, Gp0155335, Gp0155336, Gp0155336, Gp0155403, Gp0155406	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031366	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 25_S	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031940	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D2	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032421	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NN3	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F47_11290630	2170459009	Grass Soil	MGADTWHQRTVIQTPSADAMTATSYLSFSAVPEWKGAEIKYTRRSK
INPhiseqgaiiFebDRAFT_1051415391	3300000364	Soil	LKASHMLAGDPWTQRTVIQPTSADTMVVASYLSFGKVPEWKAVEIRYTRRAK*
Ga0062593_1015420311	3300004114	Soil	MSLESKSRVGADYPLAGDTWHQRTVIQPMSADAMIVASYLSFGSVPEWKGVEIKYTRKSK
Ga0062593_1025917131	3300004114	Soil	SQQFELKADYPLAGDTWHQRTVIQQASKDTMIAASYLSFGAVPEWKAVEIKYTRK*
Ga0062593_1029640392	3300004114	Soil	MPWTASYFSFSPLAGDTWHQRTVIQPLTADTMTAASYLSFGTVPEWKSVEITYTRRTK*
Ga0063455_1007809311	3300004153	Soil	AGDTWHQRTVIQPTSADTMTATSYLSFGTVPEWKGVEIKYTRRIK*
Ga0063455_1009377702	3300004153	Soil	KQFVLKADYALAGDTWHQRTVFQMVSQDAMVATSYLSFGTVPEWKAVEIKYGRKAR*
Ga0062590_1008619092	3300004157	Soil	MSLESKGRVGSYYPLAGDTWHQRTVIQPMSADAMIVASYLSFGSVPEWKVEIKYTRKSK*
Ga0062592_1023918322	3300004480	Soil	YPLAGDTWHQRTVIQPMSADAMIVASYLSFGSVPEWKGVEIKYTRKSK*
Ga0062594_1000493223	3300005093	Soil	MSLESKSRVGADYPLAGDTWHQRTVIQPMSADAMIVANYLSFGSVPEWKGVEIKYTRKSK
Ga0066814_100404332	3300005162	Soil	YDDKARQFEMTADYPLAGETWHQRTVIQPVSNDAMVAASYLSFGTVPEWKSVEIKYTRRTQ*
Ga0070690_1004228023	3300005330	Switchgrass Rhizosphere	TRQFELKADYALAGDTWHQRTVIQLLSANTMVATSYLSFGTVPEWKAVEIKYTRKQ*
Ga0066388_1009999192	3300005332	Tropical Forest Soil	RQFELKADYPLGGETWHQRTVIQPVSNDAMVAASYLSFGQVPEWKGMEIKYTRRAP*
Ga0070677_106463331	3300005333	Miscanthus Rhizosphere	KQFELKADYPLAGDTWHQRTVIQPTTADTMTAASYLSFGTVPEWKSVEIKYTRRTK*
Ga0070675_1004546413	3300005354	Miscanthus Rhizosphere	ADYQLAGETWHQRTVIQQPSADAMTATSYLSFGAVPEWKGAEIKYTRRK*
Ga0070675_1012111981	3300005354	Miscanthus Rhizosphere	DLNAAYPMAGDTWRQRTVIHIESADAMTATSYLSFGTVPEWKAVEMRYTRKQ*
Ga0070688_1008520971	3300005365	Switchgrass Rhizosphere	LRADYAMSGDTWHQRTVIEQASADAMTAASYLSFGAVPEWKGVEIKYARRSK*
Ga0070659_1002018874	3300005366	Corn Rhizosphere	TWHQRTVIQPMSADAMIVASYLSFGSVPEWKGVEIKYTRKSK*
Ga0070667_1014550222	3300005367	Switchgrass Rhizosphere	HQRTTILPQSANSMVATSYLSFGRVPEWKAVEIKYTRRP*
Ga0070709_103518671	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	GDTWHQRTVIERKSADTMVTVSYLSFGKVPEWKGVEIKYTRRGK*
Ga0070694_1012551151	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	QARRFELKGSYKLAGDTWTQRTVIQPASADSMVATSYLSFGTVPEWKAVEITYKRTGK*
Ga0070663_1007355982	3300005455	Corn Rhizosphere	MSLESKGRVGADYPLAGDTWHQRTVIQPMSADAMIVASYLSFGSVPEWKGVEIKYTRKSK
Ga0070678_1012447582	3300005456	Miscanthus Rhizosphere	SACLLSLAGDTWHQRTVIQPTTADTMTAASYLSFGTVPEWKSVEIKYTRRTK*
Ga0070678_1017264401	3300005456	Miscanthus Rhizosphere	FVSPQSTDELGESKGRVGADYPLAGDTWHQRTVIQPMSADAMIVASYLSFGSVPEWKGVEIKYTRKSK*
Ga0073909_103392641	3300005526	Surface Soil	KADYPLAGDTWHQRTVIQQTSGDAMTAASYLSFGAVPEWKAVEIKYTGKR*
Ga0070693_1009169971	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	WHQRTVIQPMSADAMIVASYLSFGSVPEWKGVEIKYTRKSK*
Ga0070664_1014373411	3300005564	Corn Rhizosphere	QDAGDTWHQRTTILPQSANSMVATSYLSFGRVPEWKAVEIKYTRRP*
Ga0068859_1005301633	3300005617	Switchgrass Rhizosphere	VIQPTTADTMTAASYLSFGTVPEWKSVEIKYTRRAK*
Ga0068864_1000678874	3300005618	Switchgrass Rhizosphere	KADYASGGDTWHQRTVIQPTTPDTMIAVSYLSFGNVPEWKAVEIKYTRRVK*
Ga0068864_1016053142	3300005618	Switchgrass Rhizosphere	FELKAEYPMAGDTWRQRTVIEITSADAMTATSYLSFGAVPEWKGVEIKYKRRSESRP*
Ga0068864_1018813541	3300005618	Switchgrass Rhizosphere	QADYPLAGDTWHQRTVIQQASKDTMIAASYLSFGAVPEWKAVEIKYTRK*
Ga0066905_1021517321	3300005713	Tropical Forest Soil	QFELKADYPLAGDTWHQRTVIQPATADTMVAASYLSFGAVPEWKSVEIKYTRRTK*
Ga0066903_1021310811	3300005764	Tropical Forest Soil	WHQRTVIEPTSTDAMTAASYLSFGAVPEWKGVEIKYTRRARCSTAAP*
Ga0066903_1060637192	3300005764	Tropical Forest Soil	DEKTKTFELKADYRLAGDTWHQRTVITQTAADAMTAASYLSFGTVPEWKAVEIKYIRRSR
Ga0066652_1013504701	3300006046	Soil	DYPLAGETWHQRTVIQPLSADTMIATSYLSFGSIPEWKGVEIKYTRRAK*
Ga0070716_1011461951	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	DYPLAGDTWHQRTVITQTSAEVMVAASYLSFGKVPEWKAVEIKYTGKR*
Ga0070712_1016503121	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	AESGVWNEQDRRFELKATFTLAGDMWTQRTVIEPTSPDAMVASSYLSFGAVPEWKAVEIRYTRRSK*
Ga0075422_103581831	3300006196	Populus Rhizosphere	TVIQQPSPDAMTAASYLSFGNVPEWKAVELKYTRGK*
Ga0097621_1013311601	3300006237	Miscanthus Rhizosphere	ADYALAGETWHQRTIIQPTSADAMVAISYLSFGTVAEWKGVEISYTRRER*
Ga0097621_1020755912	3300006237	Miscanthus Rhizosphere	FELKAEYPMGADLWTQRTVIEVTSSDKMTASSFLAFGGVPEWKAVEIRYARRTK*
Ga0079222_106705073	3300006755	Agricultural Soil	LAGDMWTQRTVIGPTSPDAMVASSYLSFGAVPEWKAVEIRYTRRSK*
Ga0066659_112372562	3300006797	Soil	RQRTVIQIVSADAMIATSYLSFGKVPEWKAVEIKYTRRAK*
Ga0075433_100827163	3300006852	Populus Rhizosphere	GETWHQRTVIQPVSNDAMIAAGYLSFGQVPEWKGMEIKYTRRAP*
Ga0075433_101688723	3300006852	Populus Rhizosphere	MAGDTWHQRTVIRASSADAMTATSFLSFGTVPEWKAVEITYARKK*
Ga0075425_1012675952	3300006854	Populus Rhizosphere	MAGDTWHQRTVIRASSADAMTATSFLSFGTVPEWKA
Ga0075425_1013917132	3300006854	Populus Rhizosphere	KRFELKADYPLAGDTWHQRTVIQPTSADTMIAASYLSFGTVPEWKSVEIKYTRRAK*
Ga0075434_1003115932	3300006871	Populus Rhizosphere	MAGDTWHQRTLIHASSADAMTATSFLSFGTVPEWKAVEITYARKK*
Ga0075434_1024773011	3300006871	Populus Rhizosphere	VRSSSRAPWSPARHFELKATYVLAGDTWSQRAVIEPTSSNTMVVASYLSFGKVPEWKAVEIRYTKRT*
Ga0079219_115649712	3300006954	Agricultural Soil	DYLLAGDTWHQRTVIKMSSSETMQATSYLSFGTVPEWKGVEIKYSKSTK*
Ga0099827_115343021	3300009090	Vadose Zone Soil	VAPAHVIQPTSADAMIATSYLSFGKVPEWKGVEIK*
Ga0111539_103257243	3300009094	Populus Rhizosphere	QFELKADYALAGDTWHQRTVIQQPSPDAMTAASYLSFGNVPEWKAVELKYTRGK*
Ga0105245_102777971	3300009098	Miscanthus Rhizosphere	TWHQRTIIQPTSADAMVAISYLSFGTVAEWKGVEISYTRRER*
Ga0075418_115524441	3300009100	Populus Rhizosphere	HQRTVIQPTSADVMTATSYLSFGAVPEWKGVEIKYTRRAR*
Ga0105247_117546321	3300009101	Switchgrass Rhizosphere	DTWHQRTVIQPTTADTMTAASYLSFGTVPEWKSVEIKYTRRAK*
Ga0105243_125595572	3300009148	Miscanthus Rhizosphere	LKAEYPVAGDLWHQRTVIQPISADTMIAASYLSFGTVPEWKGVEIKYTRGAK*
Ga0105241_105761571	3300009174	Corn Rhizosphere	MAGDTWTQRTLIEPTSPNTMVVASYLSFGKVPEWKAVEIRYTRRAGAQ*
Ga0105242_106471602	3300009176	Miscanthus Rhizosphere	SYPLAGETWTQRTVIQPTSPNTMVADSYLSFGTVPEWKAVEIKYARRPK*
Ga0105242_110644691	3300009176	Miscanthus Rhizosphere	YPLAGDTWHQRTVIQQTSKDTMMAASYLSFGAVPEWKGVEIKYTRK*
Ga0105242_119238942	3300009176	Miscanthus Rhizosphere	QQFELKADYPFAGDTWHQRTVIRMTSADAMVAASYLSFGQVPEWKGVEIKYARRH*
Ga0105237_108814332	3300009545	Corn Rhizosphere	LLSLAGDTWHQRTVIQPTTADTMTAASYLSFGTVAEWKSVEIKYTRRAK*
Ga0105249_125685232	3300009553	Switchgrass Rhizosphere	LAGETWHQRTVIQQPSADAMTATSYLSFGTVPEWKGAEIKYTRRK*
Ga0126377_117830182	3300010362	Tropical Forest Soil	WDEAARHFELKGSYQMAGETWRQRTVIEPTSANTMIAVSYLSFGTVPEWKALEIRYTRRAK*
Ga0105239_103441122	3300010375	Corn Rhizosphere	DESTGQFELKADYALAGETWHQRTIIQPTSADAMVAISYLSFGTVAEWKGVEISYTRRER
Ga0136449_1006766531	3300010379	Peatlands Soil	KQFELKAEYPLAGDTWRQRTVIQPTSSDAMLVASYLSFGKVPEWKGVEIKYTRRSSTK*
Ga0136847_108166111	3300010391	Freshwater Sediment	IQPTSADVMTATSYLSFGAVPEWKAVEIRYTRRAK*
Ga0134126_120632451	3300010396	Terrestrial Soil	DYPLAGDTWHQRTVIQPMSADAMIVASYLSFGSVPEWKGVEIKYTRKSK*
Ga0134121_102790121	3300010401	Terrestrial Soil	HQRTVIQPASADAMTAVSYLSFGSVPEWKGIEIKYVRRAKCDTAVR*
Ga0134121_114368572	3300010401	Terrestrial Soil	YPLGGDTWHQRTVIQPTSADAMTVTSYLSFGKVPEWKGVEMKYSRKSG*
Ga0105246_113780712	3300011119	Miscanthus Rhizosphere	LKAEYPVAGDLWHQRTVIQPISADTMIAASYLSFGTVHEWKGVEI
Ga0137383_109020792	3300012199	Vadose Zone Soil	LKADYPLAGETWHQRTVILPLSADAMMATSYLSFGNVPEWKGVEIKYTRRAK*
Ga0137376_117742732	3300012208	Vadose Zone Soil	VIQPMSADTMIATSYLSFGKVPEWKGVEIKYTRRAK*
Ga0150985_1038276501	3300012212	Avena Fatua Rhizosphere	GDSWTQRTVIQPTSADTMVATSYLSFGKVPEWKAVEIKYARRSK*
Ga0137359_109441561	3300012923	Vadose Zone Soil	TKQFELKAEYPMAGETWRQRTVIQPLTADTMIATSYLSFGKVPEWKGVEIKYTRRAK*
Ga0137404_112681031	3300012929	Vadose Zone Soil	KTGQFELKAEYPLAGETWRQRTVIQPMSADTMIATSYLSFGNVPEWKGVEIKYTR*
Ga0126375_114644761	3300012948	Tropical Forest Soil	HQRTVIQPTSADTMIATSYLSFGTVPEWKGVEIKYRRRAK*
Ga0164303_113033341	3300012957	Soil	TWHQRTVIQSTSADTMTAASYLSFGTVPEWKGVELKYARRTK*
Ga0164306_107615931	3300012988	Soil	LKADYALAGDTWHQRTVIQLLSANTMVATSYLSFGTVPEWKAVEIKYTRKQ*
Ga0157372_131934202	3300013307	Corn Rhizosphere	GADYPLAGDTWHQRTVIQPMSADAMIVASYLSFGSVPEWKGVEIKYTRKSK*
Ga0157375_125214731	3300013308	Miscanthus Rhizosphere	EQVKQFELKADYPLAGDIWHQRTVIQQTSNDTMIAASYLSFGAVPEWKAVEIKYTRK*
Ga0157380_130577642	3300014326	Switchgrass Rhizosphere	LKADYALAGDTWHQRTVIQQPSPDAMTAASYLSFGNVPEWKAVEIKYTRRK*
Ga0157380_133877751	3300014326	Switchgrass Rhizosphere	EKTKQFELKADYSLAGDTWHQRTVIQQTSPDAMIATSYLSFGTVAEWKAVEIKYTRRAK*
Ga0132258_124765442	3300015371	Arabidopsis Rhizosphere	AFDEKTGQFELKGDYQLAGQTWHQRTVIQPGPGSAMTATSYLSFGTVPEWKAVNISYTRQTK*
Ga0132256_1023220892	3300015372	Arabidopsis Rhizosphere	WHQRTVIEVTSADAMTATSYLSFGTVPEWKAVEIKYRRTQKTR*
Ga0132255_1010183993	3300015374	Arabidopsis Rhizosphere	WHQRTVIQATSADAMVAASYLSFGQVAEWKGVEIKYTRRK*
Ga0132255_1011392041	3300015374	Arabidopsis Rhizosphere	DENAKRFELKADYPLAGDTWHQRTVIQPTSADTMIAASYLSFGTVPEWKSVEIKYTRRAK
Ga0132255_1029279841	3300015374	Arabidopsis Rhizosphere	TKQFELKADYPLAGQTWHQRTVIAPISAEAMLATSYLSFGTVPEWKAVEIKYTRKQ*
Ga0132255_1053887531	3300015374	Arabidopsis Rhizosphere	DTWHQRTVIQQPSPDAMTAASYLSFGNVPEWKAVEIKYTRRK*
Ga0187871_102941891	3300018042	Peatland	SQFELKAEYPFAGDTWHQRTVIETKSANAMLVRSYLSVGKTPEWKGVEIRYQRRTR
Ga0187859_102654641	3300018047	Peatland	ANRFELKADYPLGGDTWRQRTVIEAKSADTMIVRSYLSFGTVPEWLGVEIKYQRRTK
Ga0066667_113986762	3300018433	Grasslands Soil	WRQRTVIQIVSAEAMIATSYLSFGKVPEWKAVEIKYTRKAK
Ga0210401_104152351	3300020583	Soil	ESGSYDEKAKQFELKAEYPMAGDTWRQRTVIQPTLPDAMLVSSYLTFGNVPEWKGVEIKYTRKGK
Ga0210394_101903662	3300021420	Soil	MAGDTWRQRTVIQPMLPDAMLVASYLSLGKVPEWKGVEIKYTRKGK
Ga0207659_111296152	3300025926	Miscanthus Rhizosphere	MPWTASYFSFSPLAGDTWHQRTVIQPLTADTMTAASYLSFGTVPEWKSVEITYTRRTK
Ga0207690_102054751	3300025932	Corn Rhizosphere	VIQPMSADAMIVASYLSFGSVPEWKGVEIKYTRKSK
Ga0207686_103308581	3300025934	Miscanthus Rhizosphere	ASYPLAGETWTQRTVIQPTSPNTMVADSYLSFGTVPEWKAVQIKYTRRPK
Ga0207686_112514732	3300025934	Miscanthus Rhizosphere	AGDTWHQRTVIQLLSANTMVATSYLSFGTVPEWKAVEIKYTRKQ
Ga0207670_107485273	3300025936	Switchgrass Rhizosphere	KASYPLAGETWTQRTVIQPTSPNTMVADSYLSFGTVPEWKAVQIKYTRRPK
Ga0207679_109182842	3300025945	Corn Rhizosphere	GHFDELAKAFDLKADYQDAGDTWHQRTTILPQSANSMVATSYLSFGRVPEWKAVEIKYTRRP
Ga0207712_117841011	3300025961	Switchgrass Rhizosphere	DETAKQFELKAEYPLGGDTWHQRTVIQPTTADTMTAASYLSFGTVPEWKSVEIKYTRRAK
Ga0207640_114232652	3300025981	Corn Rhizosphere	AGDTWHQRTVIQQGSGDTMTATSYLSFGAVPEWKGVEIKYTRQTK
Ga0207640_121065972	3300025981	Corn Rhizosphere	KANRFELEADYSLAGDTWHQRTVIQPASSDSMTATSYLRFGAVPEWKAVEIKYTRRAK
Ga0207658_101466422	3300025986	Switchgrass Rhizosphere	FELKADYALAGETWHQRTIIQPTSADAMVAISYLSFGTVAEWKGVEISYTRRER
Ga0207677_101241051	3300026023	Miscanthus Rhizosphere	LAGETWHQRTIIQPTSADAMVAISYLSFGTVAEWKGVEISYTRRER
Ga0207677_112729801	3300026023	Miscanthus Rhizosphere	AEYPLGGDTWHQRTVIQPTTADTMTAASYLSFGTVPEWKSVEIKYTRRAK
Ga0207703_118564511	3300026035	Switchgrass Rhizosphere	EKANQFNLKADYPLAGDTWHQRTVIEPKSAGTMVVTSYLSFGSTPEWKAVEIAYKRRTGP
Ga0207641_105152213	3300026088	Switchgrass Rhizosphere	QFELKADYASGGDTWHQRTVIQPTTPDTMIAVSYLSFGNVPEWKAVEIKYTRRVK
Ga0207676_101509541	3300026095	Switchgrass Rhizosphere	YPLGGDTWHQRTVIQPTTADTMTAASYLSFGTVPEWKSVEIKYTRRTK
Ga0207676_117230631	3300026095	Switchgrass Rhizosphere	QQFELQADYPLAGDTWHQRTVIQQASKDTMIAASYLSFGAVPEWKAVEIKYTRK
Ga0207676_124724041	3300026095	Switchgrass Rhizosphere	KADYASGGDTWHQRTVIQPTTPDTMIAVSYLSFGNVPEWKAVEIKYTRRVK
Ga0209811_102583651	3300027821	Surface Soil	HQRTVIQLLSANTMVATSYLSFGTVPEWKAVEIKYTRKQ
Ga0170824_1204119231	3300031231	Forest Soil	QRTVIQQTTADAMTAASYLSFGAVPEWKAVEIKYAGKK
Ga0302325_113968931	3300031234	Palsa	KAEYPLAGDTWRQRTVIQPTSSDAMLVASYLSVGKVPEWKGVEIKYTRRSSTK
Ga0307506_102743111	3300031366	Soil	RQFELKADYAMAGDTWHQRTVIQPQSADTMTAASYLSFGAVPEWKAVQIRYTRVSP
Ga0170818_1108310611	3300031474	Forest Soil	TKQFELNADYPLAGDTWHQRTVIQQTAADAMKATSYLRFGSVPEWKAVEMRYTLRAK
Ga0318542_101621781	3300031668	Soil	ETWHQRTVIQQSSPDAMTATSYLSFGSVPEWKAVEIKYSRK
Ga0310813_107403301	3300031716	Soil	QTKQFELKADYPLAGETWHQRTVIRQLSPTSMIATSYLSFGGVPEWKGVEITYTRRP
Ga0310813_116767551	3300031716	Soil	WHQRTVIQTIAADAMIAASYLSFATVPEWKGVEIKYTRRAK
Ga0306919_109978542	3300031879	Soil	LKADYPLGGDTWHQRTVIQQASPDAMTATSYLSFGTVAEWKAVEMKYTRRR
Ga0306923_105160261	3300031910	Soil	LIEVRSPESMIATSYLSFGQVPEWKGVEIKYARRTK
Ga0306921_106221822	3300031912	Soil	HQRTVIEQTSADAMIARSFLSFGKVPEWMAVEIQYSRRTK
Ga0310901_104952971	3300031940	Soil	QFELKADYALAGDTWHQRTVIQQPSPDAMTAASYLSFGNVPEWKAVELKYTRGK
Ga0306922_118090172	3300032001	Soil	LAGDTWHQRTVIEIVSADAMVATSYLSFGAVPEWKAVEIKYTRRP
Ga0318559_104495282	3300032039	Soil	LKADYPLAGDTWHQRTVIQQTSADTMTATSYLSFGNVPEWKGVEITYARRAR
Ga0318558_105780641	3300032044	Soil	SFGGDTWHQRTLIEVRSPESMIATSYLSFGQVPEWKGVEIKYARRTK
Ga0310890_109772482	3300032075	Soil	ARQFELKADYPLAGETWHQRTVIQPVSNDSMAAISYLSFGNVPEWKSVEIKYTRRTQ
Ga0318525_105635972	3300032089	Soil	AGDTWHQRTVIQQSSPDAMTAESYLSFGKVPEWRAVEIKYARRK
Ga0310812_103060951	3300032421	Soil	ELKADYALGGDTWHQRTVIQPSSADAMIATSYLSFGQVPEWKAVEIKYTRKAN
Ga0335085_116343621	3300032770	Soil	KQFELKADYPMAGDTWHQRTVIQAKSADEMTVSSYLGFGTTPEWKGVEISYRRRAK
Ga0335082_103452811	3300032782	Soil	TWRQRTVIKVLSPDAMLATSYLSFGAVPEWKAVEIKYSRQ
Ga0335080_118841152	3300032828	Soil	VIQPVSSDAMVATSYLSFGKVPEWKGVEIKYTRKEK
Ga0310810_1000185317	3300033412	Soil	MPWTASYFSFSPLAGDTWHQRTVIQPLTADIMTAASYLSFGTVPEWKSVEITYTRRTK
Ga0310811_106518653	3300033475	Soil	FDENANQFELEADYPLAGDTWHQRTVIQPASSDSMTATSYLRFGAVPEWKAVEIKYTRRA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F061189

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences