Basic Information | |
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Family ID | F061165 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 132 |
Average Sequence Length | 49 residues |
Representative Sequence | GLIWYLLACANIWRAALDSGLGLGIAISVGYLLLSMVLEQQLLPDA |
Number of Associated Samples | 113 |
Number of Associated Scaffolds | 132 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 1.53 % |
% of genes near scaffold ends (potentially truncated) | 96.97 % |
% of genes from short scaffolds (< 2000 bps) | 90.15 % |
Associated GOLD sequencing projects | 106 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.43 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (77.273 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa (18.939 % of family members) |
Environment Ontology (ENVO) | Unclassified (30.303 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (53.788 % of family members) |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 54.05% β-sheet: 0.00% Coil/Unstructured: 45.95% | Feature Viewer |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.43 |
Powered by PDBe Molstar |
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Pfam ID | Name | % Frequency in 132 Family Scaffolds |
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PF08245 | Mur_ligase_M | 65.91 |
PF01225 | Mur_ligase | 21.97 |
PF02190 | LON_substr_bdg | 5.30 |
PF02517 | Rce1-like | 2.27 |
PF00072 | Response_reg | 0.76 |
PF01497 | Peripla_BP_2 | 0.76 |
PF01612 | DNA_pol_A_exo1 | 0.76 |
PF00202 | Aminotran_3 | 0.76 |
PF01068 | DNA_ligase_A_M | 0.76 |
COG ID | Name | Functional Category | % Frequency in 132 Family Scaffolds |
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COG0769 | UDP-N-acetylmuramyl tripeptide synthase | Cell wall/membrane/envelope biogenesis [M] | 21.97 |
COG0770 | UDP-N-acetylmuramyl pentapeptide synthase | Cell wall/membrane/envelope biogenesis [M] | 21.97 |
COG0773 | UDP-N-acetylmuramate-alanine ligase MurC and related ligases, MurC/Mpl family | Cell wall/membrane/envelope biogenesis [M] | 21.97 |
COG1266 | Membrane protease YdiL, CAAX protease family | Posttranslational modification, protein turnover, chaperones [O] | 2.27 |
COG4449 | Predicted protease, Abi (CAAX) family | General function prediction only [R] | 2.27 |
COG0614 | ABC-type Fe3+-hydroxamate transport system, periplasmic component | Inorganic ion transport and metabolism [P] | 0.76 |
COG1423 | ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family | Replication, recombination and repair [L] | 0.76 |
COG1793 | ATP-dependent DNA ligase | Replication, recombination and repair [L] | 0.76 |
COG4558 | ABC-type hemin transport system, periplasmic component | Inorganic ion transport and metabolism [P] | 0.76 |
COG4592 | ABC-type Fe2+-enterobactin transport system, periplasmic component | Inorganic ion transport and metabolism [P] | 0.76 |
COG4594 | ABC-type Fe3+-citrate transport system, periplasmic component | Inorganic ion transport and metabolism [P] | 0.76 |
COG4607 | ABC-type enterochelin transport system, periplasmic component | Inorganic ion transport and metabolism [P] | 0.76 |
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Name | Rank | Taxonomy | Distribution |
Unclassified | root | N/A | 77.27 % |
All Organisms | root | All Organisms | 22.73 % |
Visualization |
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Habitat | Taxonomy | Distribution |
Palsa | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa | 18.94% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 15.15% |
Bog | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog | 14.39% |
Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 6.82% |
Host-Associated | Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated | 6.06% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 5.30% |
Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 5.30% |
Bog Forest Soil | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil | 4.55% |
Bog | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog | 2.27% |
Watersheds | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds | 2.27% |
Peatlands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil | 2.27% |
Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 2.27% |
Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil | 2.27% |
Soil | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil | 2.27% |
Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere | 1.52% |
Peatland | Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland | 0.76% |
Glacier Forefield Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil | 0.76% |
Arctic Peat Soil | Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil | 0.76% |
Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil | 0.76% |
Untreated Peat Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil | 0.76% |
Tropical Peatland | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland | 0.76% |
Fen | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen | 0.76% |
Soil | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil | 0.76% |
Palsa | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa | 0.76% |
Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 0.76% |
Fen | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen | 0.76% |
Visualization |
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Taxon OID | Sample Name | Habitat Type | IMG/M Link |
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3300001593 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 | Environmental | Open in IMG/M |
3300001661 | Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly) | Environmental | Open in IMG/M |
3300002245 | Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027) | Environmental | Open in IMG/M |
3300004082 | Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3 | Environmental | Open in IMG/M |
3300004092 | Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3 | Environmental | Open in IMG/M |
3300005591 | Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 | Environmental | Open in IMG/M |
3300005712 | Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 | Environmental | Open in IMG/M |
3300005994 | Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049 | Environmental | Open in IMG/M |
3300006052 | Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013 | Environmental | Open in IMG/M |
3300006174 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014 | Environmental | Open in IMG/M |
3300009038 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG | Environmental | Open in IMG/M |
3300009500 | Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG | Host-Associated | Open in IMG/M |
3300009697 | Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fd - Sphagnum magellanicum MG | Host-Associated | Open in IMG/M |
3300009701 | Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum fallax MG | Host-Associated | Open in IMG/M |
3300009709 | Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fb - Sphagnum magellanicum MG | Host-Associated | Open in IMG/M |
3300010379 | Sb_50d combined assembly | Environmental | Open in IMG/M |
3300012202 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG | Environmental | Open in IMG/M |
3300012685 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG | Environmental | Open in IMG/M |
3300012918 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG | Environmental | Open in IMG/M |
3300012924 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
3300012927 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
3300014165 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG | Environmental | Open in IMG/M |
3300014200 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG | Environmental | Open in IMG/M |
3300014201 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG | Environmental | Open in IMG/M |
3300014489 | Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG | Environmental | Open in IMG/M |
3300014502 | Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly) | Environmental | Open in IMG/M |
3300015197 | Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G6B, Proglacial plain, adjacent to northern proglacial tributary) | Environmental | Open in IMG/M |
3300018037 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10 | Environmental | Open in IMG/M |
3300018085 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG | Environmental | Open in IMG/M |
3300020034 | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c2 | Environmental | Open in IMG/M |
3300020140 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
3300020580 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M | Environmental | Open in IMG/M |
3300020581 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M | Environmental | Open in IMG/M |
3300021171 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M | Environmental | Open in IMG/M |
3300021180 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O | Environmental | Open in IMG/M |
3300021401 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O | Environmental | Open in IMG/M |
3300021402 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O | Environmental | Open in IMG/M |
3300021405 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O | Environmental | Open in IMG/M |
3300021407 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O | Environmental | Open in IMG/M |
3300021420 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M | Environmental | Open in IMG/M |
3300021433 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O | Environmental | Open in IMG/M |
3300021475 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O | Environmental | Open in IMG/M |
3300021478 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M | Environmental | Open in IMG/M |
3300021479 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M | Environmental | Open in IMG/M |
3300023101 | Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 10-14 | Environmental | Open in IMG/M |
3300024295 | Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 1-5 | Environmental | Open in IMG/M |
3300024330 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction) | Environmental | Open in IMG/M |
3300025484 | Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210 deep-092012 (SPAdes) | Environmental | Open in IMG/M |
3300025916 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) | Environmental | Open in IMG/M |
3300026557 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal | Environmental | Open in IMG/M |
3300027565 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M1 (SPAdes) | Environmental | Open in IMG/M |
3300027567 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O2 (SPAdes) | Environmental | Open in IMG/M |
3300027692 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1 (SPAdes) | Environmental | Open in IMG/M |
3300027768 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM1 (SPAdes) | Environmental | Open in IMG/M |
3300027795 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes) | Environmental | Open in IMG/M |
3300027807 | Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fd - Sphagnum fallax MG (SPAdes) | Host-Associated | Open in IMG/M |
3300027812 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes) | Environmental | Open in IMG/M |
3300027824 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes) | Environmental | Open in IMG/M |
3300027860 | Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG (SPAdes) | Host-Associated | Open in IMG/M |
3300027879 | Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes) | Environmental | Open in IMG/M |
3300027898 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes) | Environmental | Open in IMG/M |
3300027905 | Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes) | Environmental | Open in IMG/M |
3300028566 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E3_2 | Environmental | Open in IMG/M |
3300028762 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N3_3 | Environmental | Open in IMG/M |
3300028765 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N2_2 | Environmental | Open in IMG/M |
3300028783 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_3 | Environmental | Open in IMG/M |
3300028800 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG | Host-Associated | Open in IMG/M |
3300028801 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_3 | Environmental | Open in IMG/M |
3300028813 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_3 | Environmental | Open in IMG/M |
3300028860 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N2_3 | Environmental | Open in IMG/M |
3300028867 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E3_3 | Environmental | Open in IMG/M |
3300028877 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_3 | Environmental | Open in IMG/M |
3300028879 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_3 | Environmental | Open in IMG/M |
3300028882 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N2_3 | Environmental | Open in IMG/M |
3300029910 | III_Palsa_E2 coassembly | Environmental | Open in IMG/M |
3300029913 | III_Bog_N3 coassembly | Environmental | Open in IMG/M |
3300029915 | III_Bog_E1 coassembly | Environmental | Open in IMG/M |
3300029939 | I_Bog_E3 coassembly | Environmental | Open in IMG/M |
3300029943 | I_Palsa_N3 coassembly | Environmental | Open in IMG/M |
3300029944 | II_Palsa_E1 coassembly | Environmental | Open in IMG/M |
3300029945 | I_Bog_N2 coassembly | Environmental | Open in IMG/M |
3300029951 | III_Palsa_N1 coassembly | Environmental | Open in IMG/M |
3300029954 | I_Bog_N3 coassembly | Environmental | Open in IMG/M |
3300029994 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E1_4 | Environmental | Open in IMG/M |
3300030007 | I_Palsa_E1 coassembly | Environmental | Open in IMG/M |
3300030020 | II_Bog_N1 coassembly | Environmental | Open in IMG/M |
3300030053 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_2 | Environmental | Open in IMG/M |
3300030056 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_3 | Environmental | Open in IMG/M |
3300030490 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_3 | Environmental | Open in IMG/M |
3300030503 | III_Palsa_E3 coassembly | Environmental | Open in IMG/M |
3300030507 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E3_2 | Environmental | Open in IMG/M |
3300030580 | II_Palsa_N1 coassembly | Environmental | Open in IMG/M |
3300030618 | II_Palsa_E3 coassembly | Environmental | Open in IMG/M |
3300030646 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N3_2 | Environmental | Open in IMG/M |
3300030688 | II_Bog_N2 coassembly | Environmental | Open in IMG/M |
3300030739 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_3 | Environmental | Open in IMG/M |
3300030743 | Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VCO Co-assembly | Environmental | Open in IMG/M |
3300030969 | Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 Emin (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
3300031057 | Oak Coassembly Site 11 - Champenoux / Amance forest | Environmental | Open in IMG/M |
3300031090 | Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300031233 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_2 | Environmental | Open in IMG/M |
3300031234 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2 | Environmental | Open in IMG/M |
3300031236 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1 | Environmental | Open in IMG/M |
3300031258 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_1 | Environmental | Open in IMG/M |
3300031524 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3 | Environmental | Open in IMG/M |
3300031525 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3 | Environmental | Open in IMG/M |
3300031708 | FICUS49499 Metagenome Czech Republic combined assembly | Environmental | Open in IMG/M |
3300031715 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05 | Environmental | Open in IMG/M |
3300031718 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 | Environmental | Open in IMG/M |
3300031823 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05 | Environmental | Open in IMG/M |
3300032160 | Sb_50d combined assembly (MetaSPAdes) | Environmental | Open in IMG/M |
3300033824 | Peat soil microbial communities from Stordalen Mire, Sweden - 714 S2 5-9 | Environmental | Open in IMG/M |
3300034130 | Peat soil microbial communities from wetlands in Alaska, United States - Collapse_03_16 | Environmental | Open in IMG/M |
Geographical Distribution | |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI12635J15846_105229301 | 3300001593 | Forest Soil | FVGLIWYLLACANIWRAALESGLALGAAISVGYLLLSMALEQRLLSAS* |
JGI12635J15846_105711231 | 3300001593 | Forest Soil | SDRLAALPLGILMLLGMIWYLLACANIWRAALDSRLSIGVVVSVGYFLLSMVLEQQLLPDT* |
JGI12053J15887_104440992 | 3300001661 | Forest Soil | PHHRSDRLEAVPLGILMLVGLIWYLLACANIWRAALDSGLSIGIVVSVGYLLLSIALEQKLLPDT* |
JGIcombinedJ26739_1018804842 | 3300002245 | Forest Soil | GLVWYLLACANIWRAALDARLGLGVAISVGYLLLSMALEQQLLPKS* |
Ga0062384_1004298271 | 3300004082 | Bog Forest Soil | LACANIWRAALDSGISLGIAISVGYLLLSILLEQQVLTDP* |
Ga0062389_1022657212 | 3300004092 | Bog Forest Soil | LGLLLYAGLIWYLLGCANIWRAALDSGFILGGVISVGYLVLSIALEQLLLPQT* |
Ga0070761_109982662 | 3300005591 | Soil | AALPIGLLLVVGLVWYLLACANIWRAALDARLALGAAISLAYLVLSTALEQQLLPPS* |
Ga0070764_103445552 | 3300005712 | Soil | NLASIPLEILMLIVWIWYMLACANIWRAAMDSGAILGIAISVGCLLLTIVVEQQFLPDA* |
Ga0066789_103155462 | 3300005994 | Soil | FAGLIWYLLACANIWRAALDSRLGLGAAISVGYLLLSMALEQRLLPEP* |
Ga0075029_1010345962 | 3300006052 | Watersheds | DRPLSIPLGVLLFAGLIWYLLACANIWRAALDSRLGLGAVISVGYLLLSMALEQRLLPEP |
Ga0075014_1000148434 | 3300006174 | Watersheds | LLGCANIWRAALDSGFFLGGVISVGYLVLSIALEQLLLPQT* |
Ga0099829_103771621 | 3300009038 | Vadose Zone Soil | MLRLAKAFWDIWYLLACANIRRAALDSGLGLGIAISVGYLLLSMVLEQQLLP |
Ga0116229_1001409111 | 3300009500 | Host-Associated | GIVWYLLACANIWRAALESRLGLGMALSLAYFIGSTLLEIRLLPVA* |
Ga0116229_110084081 | 3300009500 | Host-Associated | VGFLLLVGFVWYLLACANIWRAALDSGIGLGIAISVGYLLLSFALEEQLLPNV* |
Ga0116231_100817141 | 3300009697 | Host-Associated | TLACANIWRAALDSGIGIGVAVSVGYMVLSVLLGQQFLSDA* |
Ga0116228_110372552 | 3300009701 | Host-Associated | YMLACAHIWRSALESSLSLGIAISLGYLLLSIGLEQYLLPDS* |
Ga0116227_101935942 | 3300009709 | Host-Associated | ACANIWRAALDARLGLGVAISVGYLLLSMALEQRLLPKS* |
Ga0116227_101986612 | 3300009709 | Host-Associated | LGLLLFAGLIWYLLACANIWRAALDSGIGLGLAVSVGYLLLSMALEQQFLPDA* |
Ga0136449_1008834972 | 3300010379 | Peatlands Soil | VLLFAGLIWYLLACANIWRAALDAGVGLGAAISVGYLLLSMALEQLLLPEP* |
Ga0137363_104661952 | 3300012202 | Vadose Zone Soil | AIPLGLMLFVGLIWYLLACANIWRAALDSGLGLGIAISVAYLLLSMALEQQLLPDA* |
Ga0137397_110297392 | 3300012685 | Vadose Zone Soil | IWYLLACANIWRAALDSGLGLGIAISVGYLLLSMVLEQQLLPDA* |
Ga0137396_110252671 | 3300012918 | Vadose Zone Soil | KPAGIPLGLLLFVGLIWYLLACANIWRAALDSGLGLGIVISVGYLLLSMVLEQQLLPDA* |
Ga0137413_107026332 | 3300012924 | Vadose Zone Soil | YLLACANIWRAALDSGLGLGIAISVAYLLLSMVLEQQLLPDA* |
Ga0137416_112459902 | 3300012927 | Vadose Zone Soil | YLLACANIWRAALDSRLSVGVAISLGYLLLSIALEQQLLPDT* |
Ga0181523_107565311 | 3300014165 | Bog | LIWYLLACANIWRAALDAGVGIGAAISVGYLLLSMALEQQLLPEP* |
Ga0181526_108281541 | 3300014200 | Bog | IPLGVLLLAGLIWYLLACANIWRAALDSRLGLGAMISVGYLLLSMALEQRLLPEP* |
Ga0181537_110549042 | 3300014201 | Bog | CANIWRAALDARLGLGVAISVGYLLLSMALEQQLLPKS* |
Ga0182018_105513401 | 3300014489 | Palsa | PVGILLLVGLIWYLLACANIWRAALDARLGLGGAISIGYLLLSMFLEQKLVPNS* |
Ga0182021_123768772 | 3300014502 | Fen | DRLESVPLGVLMLIGLIWYVLACTNIWRSALDSGIALGVVVSVAYLLLSILLEQQLLPDT |
Ga0167638_10053105 | 3300015197 | Glacier Forefield Soil | LSFVGLVWYLLACAHIWRAALESGLSLGIAISVCYLVLSVALEQLLLPDA* |
Ga0187883_104288111 | 3300018037 | Peatland | ACANIWRAALDARLGLGGSISVAYLLLSMFLEQTLVPNS |
Ga0187772_109978971 | 3300018085 | Tropical Peatland | ACARIWRAALDARLALGAAISFGYLLLSWMLEQQLLPQS |
Ga0193753_102664572 | 3300020034 | Soil | MLIGLIWYVLACTNIWRSALDSGTALGVVVSVGYLLLSILLEQQLLPDA |
Ga0179590_10379432 | 3300020140 | Vadose Zone Soil | YLLACANIWRAALDSGLSLGIVVSVAYLVLSMALEQQLLPDT |
Ga0210403_102208611 | 3300020580 | Soil | LGILMLLGLIWYLLACANIWRAALESGLSIGLVISVGYLLLSIALEQQLLPDT |
Ga0210403_107493752 | 3300020580 | Soil | LLACANIWRAALDSGLSLGVAISVAYLVLSMALEQQLLPDT |
Ga0210403_109136321 | 3300020580 | Soil | SLASAPLGFLMLIGLIWYLLACANIWRVALDSGLAVGIAVSVSYLLLSILLELQTLPKS |
Ga0210399_109825421 | 3300020581 | Soil | LGFLMLIGLIWYLLACANIWRVALDSGIGVGIAVSVSYLLLSILLELQALPET |
Ga0210405_103102302 | 3300021171 | Soil | IWRAALDSGFMLGGVISVGYLVLSIALEQLLLPQT |
Ga0210396_111678011 | 3300021180 | Soil | ANIWRAALDARLGLGGAISIGYLLLSMFLEQKLVPNS |
Ga0210396_115361952 | 3300021180 | Soil | LMLVALIWYLLACANIWRAALDSRLGLGVVVSVGYLVLSILLEQLLLPDT |
Ga0210393_109399941 | 3300021401 | Soil | LGLIWYLLACANIWRAALDSGLGLGIAISVGYLLLSMVLEQQLLPDA |
Ga0210393_112887062 | 3300021401 | Soil | IPLGLLLFVGLIWYLLACANIWRAALDSGLGLGIAISVGYLLLSMVLEQQLLPDA |
Ga0210385_113662621 | 3300021402 | Soil | LIWYVLACTNIWRSALDSGVALGVAVSVGYLMLSILLEQRLLPDT |
Ga0210387_108619982 | 3300021405 | Soil | ESVPFGILMLVGLIWYLLACANIWRSALDSRLSVGVAISVGYLLLSIVLEQQLLPDT |
Ga0210383_116594951 | 3300021407 | Soil | LGVLLLVGLVWYLLACANIWRAALDTRLGLGVAISVGYLLLSMALEQQLLPKS |
Ga0210394_116780782 | 3300021420 | Soil | VLLFVGLIWYLLACANIWRAALDAGVGLGAAISIGYLLLSMALEQQLLPEH |
Ga0210394_117397352 | 3300021420 | Soil | ANIWRAALDTGFILGGVISVGYLVLSIALEQLLLPQT |
Ga0210391_101181431 | 3300021433 | Soil | IGFEGPASVPLGVLLLVGLVWYLLACANIWRAALDTRLGLGVAISVGYLLLSMALEQQLLPKS |
Ga0210392_100513441 | 3300021475 | Soil | CANIWRSALDSRLSVGVAISVGYLLLSIVLEQQLLPDT |
Ga0210402_105087661 | 3300021478 | Soil | WYLLACANIWRVALDSGLAVGIAVSVSYLLLSILLELQTLPKS |
Ga0210410_102867391 | 3300021479 | Soil | SIPLGLLLYVGLIWYLLACANIWRAALDSGFMLGGLISVAYLVLSIALEQLLLPQT |
Ga0224557_12991471 | 3300023101 | Soil | LGVLMLVGLVWYLLACANIWRCALDSGLSLGVAVSVGYLLLSIVLEQQLLPDT |
Ga0224556_10214571 | 3300024295 | Soil | LPVGILLLVGLIWYLLACANIWRAALDARLGLGGAISVGYLLLSMFLEQTLVPNS |
Ga0137417_13273102 | 3300024330 | Vadose Zone Soil | CANIWRSALDSRLSVGVAISVGYLLLSIVLEQRLLPDT |
Ga0208587_10743771 | 3300025484 | Arctic Peat Soil | PLGVLLFAGLIWYLLACANIWRAALDSRLGLGAAISVGYLLLSMALEQRLLPEP |
Ga0207663_111688171 | 3300025916 | Corn, Switchgrass And Miscanthus Rhizosphere | IGPDSFAAVPLGILMLAGLVWYLLACANIWRCALDGGVGMGMMVSVGYFLMSILEQQLLPDK |
Ga0179587_100971353 | 3300026557 | Vadose Zone Soil | YLLACANIRRAALDSGLSLGIVVSVAYLVLSMALEQQLLPDT |
Ga0209219_11251062 | 3300027565 | Forest Soil | LACANIWRAALDSGLGLGIAISVGYLLLSMVLEQQLLPDA |
Ga0209115_10776391 | 3300027567 | Forest Soil | SVPLGVLLLVGLVWYLLACANIWRAALDARLGLGVAISVGYLLLSMALEQQLLPKS |
Ga0209530_10703192 | 3300027692 | Forest Soil | ANIWRVALDSGLALGIAISVGYFLLSLALEQRLLPDA |
Ga0209772_101049432 | 3300027768 | Bog Forest Soil | SIPLGLLLYVGLIWYLLGCANIWRAALDSGFMLGGVISVGYLVLSIALEQLLLPQT |
Ga0209139_101672302 | 3300027795 | Bog Forest Soil | VGLVWYLLACANIWRAALDARLGLGVAISVGYLLLSMALEQQLLPKS |
Ga0209208_101674051 | 3300027807 | Host-Associated | LLAGFVWYTLACANIWRAALDSGIGIGVAVSVGYMVLSVLLGQQFLSDA |
Ga0209656_102336232 | 3300027812 | Bog Forest Soil | GMLLFVGLIGYLLACANIWRSALDSGVAVGAAVSVGYLLLSMALEQQLLPET |
Ga0209040_103519582 | 3300027824 | Bog Forest Soil | IPVGMLLFVGLIGYLLACANIWRSALDSGVAVGAAVSVGYLLLSMALEQQLLPET |
Ga0209611_101857741 | 3300027860 | Host-Associated | SIPLGLLLFGGLVWYLLACANIWRAALDSGIGLGIAISVGYLLLSMLLEQQLLPDA |
Ga0209169_102672541 | 3300027879 | Soil | VAGLVWYLLACANIWRAALDARLALGAAISLGYLVLSTVLEQQLLPPA |
Ga0209067_107763741 | 3300027898 | Watersheds | IGTEHPAAIPLGLLSFVGLVWYLLACAHIWRAALESGLSLGIAISVGYLILSVALEQMLMPDT |
Ga0209415_102096131 | 3300027905 | Peatlands Soil | ANIWRAALDSGLGLGAAISVGYLLLSMALEQQLVEP |
Ga0302147_100740312 | 3300028566 | Bog | FAGLIWYLLACANIWRAALDSGLGLGLAISVAYLLISMAVEQHLLPDA |
Ga0302202_102617661 | 3300028762 | Bog | ANIWRAALNARLGLGAAISLGYLVLTLALDQQLLPNP |
Ga0302198_102439652 | 3300028765 | Bog | GLVWYLLACANIWKAALETGLSLGIAISVGYLVLSVLLEQMLLPDA |
Ga0302279_102451631 | 3300028783 | Bog | VSLRQVIGAENWASIPLEILMLIVWIGYLLACANVWRAAMDSGAILGIAISVGCLLLTIALEQQFLPDA |
Ga0265338_104617101 | 3300028800 | Rhizosphere | IWRAALDARLALGAAISLAYLVLSTALEQQLLPPS |
Ga0265338_110491392 | 3300028800 | Rhizosphere | LGMIWYLLACANIWRAALDSGLSLGVVVSVGYLLLSIALEQQLLPDT |
Ga0302226_104821722 | 3300028801 | Palsa | PPGVLLLIGLVWYLLACANIWRAALDARLGLGVAISVGYLLLSMALEQQLVPKS |
Ga0302157_103120731 | 3300028813 | Bog | LFAGLIWYLLACANIWRAALDSGLGLGLALSVGYLLLSMALEQQLLPDA |
Ga0302199_10769531 | 3300028860 | Bog | LLACANIWRAALDSGLGLGLAISVAYLLISMAVEQHLLPDA |
Ga0302146_104129771 | 3300028867 | Bog | GSDHPVAIPLGLLLFIGFIWYLLACANIWRAALDSGLALGAAISIGYLLLSIAVEQQLLPGT |
Ga0302235_102995471 | 3300028877 | Palsa | AAVPLGVLLLLGLVWYLLACANIWRAALDARLGLGVAISVGYLLLSMALEQQLLPKS |
Ga0302229_104589281 | 3300028879 | Palsa | AVPLGVLLLVGLVWYLLACANIWRAALDARLGLGVAISVGYLLLSMALEQQLLPKS |
Ga0302154_103871832 | 3300028882 | Bog | LACANIWRAALDSGLALGAAISIGYLLLSIAVEQQLLPGT |
Ga0311369_113622052 | 3300029910 | Palsa | AIPLGLLLFIGFIWYLLACANIWRAALDSGLALGAAISIGYLLLSIAVEQQLLPGT |
Ga0311369_114731402 | 3300029910 | Palsa | LLACANIWRAALDARLGLGVAISVGYLLLSMALEQQLLPKS |
Ga0311362_101145001 | 3300029913 | Bog | CAHIWRAALDSGLSLGLAISLGYLIVSIVLEQVLLPDT |
Ga0311358_102871391 | 3300029915 | Bog | EILMLIVWIGYLLACANVWRAAMDSGAILGIAISVGCLLLTIALEQQFLPDA |
Ga0311328_107147851 | 3300029939 | Bog | PIGLLLFAGLIWYLLACANIWRAALDSGLGLGLALSVGYLLLSMALEQQLLPDA |
Ga0311340_106662122 | 3300029943 | Palsa | IPLGILMLMGFIWYLLACANIWRAALDSGAGLGIAVSVGYLVLSTALEQQLLPGH |
Ga0311352_106862271 | 3300029944 | Palsa | ANIWRAAQDSGAGLGIAVSVGYLVLSTMLAQQLLPGH |
Ga0311330_105780262 | 3300029945 | Bog | LACANIWRAALDSGLGLGLAISVGYLLLSMALEQQFLPDA |
Ga0311371_104982241 | 3300029951 | Palsa | GLVWYLLACANIWRAALDARLGLGVAISVGYLLLSMALEQQLVPKS |
Ga0311371_105139031 | 3300029951 | Palsa | LLFIGFIWYLLACANIWRAALDSGLALGAAISIGYLLLSIAVEQQLLPGT |
Ga0311331_107288982 | 3300029954 | Bog | LLLFAGLIWYLLACANIWRAALDSGLGLGLALSVGYLLLSMALEQQLLPDA |
Ga0302283_13467622 | 3300029994 | Fen | PLALPVSVLSMAALIWYLLACANIWRAALNARLGLGAAISLGYLVLTLALDQQLLPNP |
Ga0311338_104650701 | 3300030007 | Palsa | NIWRAALDARLGLGVAISVGYLLLSMALEQQLLPKS |
Ga0311338_110210382 | 3300030007 | Palsa | CANIWRAALDSGIGLGIAVSVGYLVLSIVLEQQLLPNS |
Ga0311338_112538951 | 3300030007 | Palsa | PDHAASIPLGILMLVGLIWYLLACANIWRAALESGPSLGIAISVGYLLLSIVLEQQLLPD |
Ga0311344_103277482 | 3300030020 | Bog | VAIPLGLLLFIGFIWYLLACANIWRAALDSGLALGAAISIGYLLLSIAVEQQLLPGT |
Ga0302177_100131256 | 3300030053 | Palsa | GTDRPASLPLGVLLFVGLIWYLLACANIWRAALESGLALGAAISVGYLLLSMALEQRLLSAS |
Ga0302181_102056291 | 3300030056 | Palsa | VPLGVLLLLGLVWYLLACANIWRAALDARLGLGVAISVGYLLLSMALEQQLLPKS |
Ga0302184_103896901 | 3300030490 | Palsa | LLLIGLVWYLLACANIWWAALDARLGLGVAISVGYLLLSMALEQQLVPKS |
Ga0311370_102374971 | 3300030503 | Palsa | LGVLLLVGLVWYLLACANIWRAALDARLGLGVAISVGYLLLSMALEQQLLPKS |
Ga0302192_102100841 | 3300030507 | Bog | AVPLGVLMLTIFIWYWLACANIWRAALDSGFSLGAVVSVGYIVLSIVLEQQLLPDT |
Ga0311355_100368887 | 3300030580 | Palsa | PLGVLLLIGLVWYLLACANIWRAALDARLGLGVAISVGYLLLSMALEQQLVPKS |
Ga0311354_114320812 | 3300030618 | Palsa | LGVLLLLGLVWYLLACANIWRAALDARLGLGVAISVGYLLLSMALEQQLLPKS |
Ga0302316_104714582 | 3300030646 | Palsa | NIWRAALESGLALGAAISVGYLLLSMALEQRLLSAS |
Ga0311345_104690662 | 3300030688 | Bog | FGSDHPVAIPLGLLLFIGFIWYLLACANIWRAALDSGLALGAAISIGYLLLSIAVEQQLLPGT |
Ga0302311_103094342 | 3300030739 | Palsa | LFIGFIWYLLACANIWRAALDSGLALGAAISIGYLLLSIAVEQQLLPGT |
Ga0265461_134001712 | 3300030743 | Soil | GLLSFVGLVWYLLACAHIWRAALESGLILGIAISVGYLVLSVALAKLFLPVT |
Ga0075394_114140681 | 3300030969 | Soil | GLIWYLLACANIWRAALDSGLGLGIAISVGYLLLSMVLEQQLLPDA |
Ga0170834_1086885592 | 3300031057 | Forest Soil | WYLLACANIWRSALDCGVALGVAVSLSYVLLEILLGQELLPT |
Ga0265760_101982832 | 3300031090 | Soil | VPLGLLSFVGLVWYLLACAHIWRAALESGLIVGIAVSVGYLILSVALAKLFLPGT |
Ga0302307_105885932 | 3300031233 | Palsa | YLLACANIWRAALDSGAGLGIAVSVGYLVLSTMLAQQLLPGH |
Ga0302325_105941353 | 3300031234 | Palsa | WYLLACANIWRAALDSGLALGAAISIGYLLLSIAVEQQLLPGT |
Ga0302325_122582291 | 3300031234 | Palsa | IWRAALDARLGLGAAISLGYLLLSMVLEQQLLPQS |
Ga0302324_1036040441 | 3300031236 | Palsa | LASVPLGILMLAGFVWYLLACANIWRAALDARLSIGVAVSVGYFLLSIVLEQQLLPDT |
Ga0302318_105331572 | 3300031258 | Bog | PVAIPLGLLLFIGFIWYLLACANIWRAALDSGLALGAAISIGYLLLSIAVEQQLLPGT |
Ga0302320_105365582 | 3300031524 | Bog | GLVWYLLACAHIWRAALDSGLSLGLAISLGYLIVSIVLEQVLLPDT |
Ga0302320_113580301 | 3300031524 | Bog | LPVGILLLVGLIWYLLACANIWRAALDARLALGGIISVGYLLLSMFLEQTLVPNS |
Ga0302326_102418491 | 3300031525 | Palsa | PLAILFYAGLIWYLLACAHIWRAALDSGVILGGVISLGFFVLSTALAQQLLPQA |
Ga0310686_1054480881 | 3300031708 | Soil | GLIWYLLGCANIWRAALDSGFMLGGVISVGYLVLSIALEQLLLPQT |
Ga0310686_1073399662 | 3300031708 | Soil | GFIWYLLACANIWRAALDSGLALGAAISVGYLLLSIALEQQLLLGT |
Ga0310686_1073450142 | 3300031708 | Soil | YLLACANIWRAALDSGLTVGVAVSVGYLLLSMALEQQLLPDT |
Ga0310686_1089602551 | 3300031708 | Soil | CANIWRAALDAGVGLGAAISVGYLLLSMALEQQLLPEH |
Ga0310686_1159201081 | 3300031708 | Soil | VGVLLITGFIWYLLACANIWRAALDARLGLGGAISVGYLLLSMFLEQK |
Ga0307476_112300392 | 3300031715 | Hardwood Forest Soil | AWYLLACANIWRAALDARLGLGAAISLGYLLLSIVLEQQLLPQT |
Ga0307474_108332321 | 3300031718 | Hardwood Forest Soil | ACANIWRSALDSGVGLGVAVSVGYFLLSMVLEQQLLPDT |
Ga0307478_110332411 | 3300031823 | Hardwood Forest Soil | PVGIALCVGLIWYLLACAHIWRAALDAGVGLGGIISVGYLLLSIALEQQMLSAT |
Ga0311301_117083482 | 3300032160 | Peatlands Soil | VLLFAGLIWYLLACANIWRAALDAGVGLGAAISVGYLLLSMALEQLLLPEP |
Ga0334840_125171_6_155 | 3300033824 | Soil | MLVGLVWYLLACANIWRCALDSGLSLGVAVSVGYLLLSIVLEQQLLPDT |
Ga0370494_138427_440_622 | 3300034130 | Untreated Peat Soil | DHPAAIPLGLLSFAGLVWYLLACANIWKAALETGLSLGIAISVGYLVLSVLLEQMLLPDA |
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