Metagenome / Metatranscriptome Family F061123

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F061123
Family Type	Metagenome / Metatranscriptome
Number of Sequences	132
Average Sequence Length	40 residues
Representative Sequence	VLFAIGSALTLAVFFLALWLLPFETFTPFPFPRFPGFF
Number of Associated Samples	88
Number of Associated Scaffolds	132

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	43.18 %
% of genes near scaffold ends (potentially truncated)	63.64 %
% of genes from short scaffolds (< 2000 bps)	91.67 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (50.758 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (31.061 % of family members)
Environment Ontology (ENVO)	Unclassified (49.242 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (59.091 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 28.79% β-sheet: 0.00% Coil/Unstructured: 71.21%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 132 Family Scaffolds
PF01381	HTH_3	9.85
PF09361	Phasin_2	2.27
PF01068	DNA_ligase_A_M	2.27
PF04392	ABC_sub_bind	1.52
PF00999	Na_H_Exchanger	1.52
PF00126	HTH_1	0.76
PF13924	Lipocalin_5	0.76
PF01527	HTH_Tnp_1	0.76
PF12844	HTH_19	0.76
PF04909	Amidohydro_2	0.76
PF01565	FAD_binding_4	0.76
PF00589	Phage_integrase	0.76
PF00271	Helicase_C	0.76
PF07978	NIPSNAP	0.76
PF00011	HSP20	0.76
PF01326	PPDK_N	0.76
PF13432	TPR_16	0.76
PF00196	GerE	0.76
PF13481	AAA_25	0.76
PF00550	PP-binding	0.76

COG ID	Name	Functional Category	% Frequency in 132 Family Scaffolds
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	2.27
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	2.27
COG0025	NhaP-type Na+/H+ or K+/H+ antiporter	Inorganic ion transport and metabolism [P]	1.52
COG0475	Kef-type K+ transport system, membrane component KefB	Inorganic ion transport and metabolism [P]	1.52
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	1.52
COG3004	Na+/H+ antiporter NhaA	Energy production and conversion [C]	1.52
COG3263	NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domains	Energy production and conversion [C]	1.52
COG4651	Predicted Kef-type K+ transport protein, K+/H+ antiporter domain	Inorganic ion transport and metabolism [P]	1.52
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	0.76
COG0574	Phosphoenolpyruvate synthase/pyruvate phosphate dikinase	Carbohydrate transport and metabolism [G]	0.76

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.76 %
All Organisms	root	All Organisms	49.24 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.76 %
cellular organisms	root	All Organisms → cellular organisms	48.48 %
Viruses	superkingdom	All Organisms → Viruses	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.76 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	48.48 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.76 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	37.12 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.52 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.76 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	36.36 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.52 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	0.76 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.76 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	18.18 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6.06 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.52 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.52 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	0.76 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.76 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	17.42 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.27 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	1.52 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.52 %
unclassified Caudoviricetes	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes	0.76 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.76 %
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13	0.76 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	0.76 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.76 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	17.42 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.27 %
Magnetospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Magnetospirillum	1.52 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.52 %
Sinorhizobium phage PBC5	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Sinorhizobium phage PBC5	0.76 %
unclassified Beijerinckiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae	0.76 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.76 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.76 %
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.76 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	17.42 %
Magnetospirillum gryphiswaldense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Magnetospirillum → Magnetospirillum gryphiswaldense	1.52 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.52 %
Beijerinckiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	0.76 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.76 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.76 %
Bradyrhizobium jicamae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	0.76 %
Bradyrhizobium paxllaeri	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium paxllaeri	0.76 %
Sinorhizobium phage PBC5	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Sinorhizobium phage PBC5	0.76 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.76 %
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.76 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	17.42 %
Magnetospirillum gryphiswaldense MSR-1	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Magnetospirillum → Magnetospirillum gryphiswaldense → Magnetospirillum gryphiswaldense MSR-1	1.52 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.52 %
Bradyrhizobium sp. 131	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 131	0.76 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.76 %
Beijerinckiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	0.76 %
Bradyrhizobium jicamae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	0.76 %
Bradyrhizobium paxllaeri	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium paxllaeri	0.76 %
Sinorhizobium phage PBC5	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Sinorhizobium phage PBC5	0.76 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.76 %
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13	0.76 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459014\|G1P06HT01BG3DY	Not Available	599	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c2273004	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300000655\|AF_2010_repII_A100DRAFT_1031375	Not Available	980	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10134086	Not Available	516	Open in IMG/M
3300004633\|Ga0066395_10024143	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2456	Open in IMG/M
3300005332\|Ga0066388_100881018	All Organisms → cellular organisms → Bacteria	1476	Open in IMG/M
3300005332\|Ga0066388_100948818	Not Available	1431	Open in IMG/M
3300005332\|Ga0066388_108549703	Not Available	509	Open in IMG/M
3300005363\|Ga0008090_10087310	Not Available	678	Open in IMG/M
3300005468\|Ga0070707_100199628	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1949	Open in IMG/M
3300005471\|Ga0070698_100135596	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2415	Open in IMG/M
3300005574\|Ga0066694_10162617	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1059	Open in IMG/M
3300005713\|Ga0066905_100495689	All Organisms → cellular organisms → Bacteria	1014	Open in IMG/M
3300005713\|Ga0066905_100602244	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Magnetospirillum → Magnetospirillum gryphiswaldense → Magnetospirillum gryphiswaldense MSR-1	930	Open in IMG/M
3300005713\|Ga0066905_102284783	Not Available	505	Open in IMG/M
3300005764\|Ga0066903_101688430	Not Available	1205	Open in IMG/M
3300005764\|Ga0066903_101924389	Not Available	1133	Open in IMG/M
3300005764\|Ga0066903_101946985	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13	1127	Open in IMG/M
3300005764\|Ga0066903_102871704	Not Available	934	Open in IMG/M
3300005764\|Ga0066903_106153835	Not Available	628	Open in IMG/M
3300005764\|Ga0066903_107897588	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	546	Open in IMG/M
3300005764\|Ga0066903_108366606	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	528	Open in IMG/M
3300005764\|Ga0066903_108385699	Not Available	528	Open in IMG/M
3300006028\|Ga0070717_10055284	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3274	Open in IMG/M
3300006032\|Ga0066696_10351706	All Organisms → cellular organisms → Bacteria	960	Open in IMG/M
3300006175\|Ga0070712_100782026	Not Available	818	Open in IMG/M
3300006606\|Ga0074062_12272714	Not Available	509	Open in IMG/M
3300006800\|Ga0066660_10711031	Not Available	824	Open in IMG/M
3300006852\|Ga0075433_10800307	Not Available	824	Open in IMG/M
3300006871\|Ga0075434_100122219	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2619	Open in IMG/M
3300009792\|Ga0126374_10658459	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	781	Open in IMG/M
3300009792\|Ga0126374_11667405	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	529	Open in IMG/M
3300010043\|Ga0126380_10283359	Not Available	1168	Open in IMG/M
3300010043\|Ga0126380_10835928	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	757	Open in IMG/M
3300010046\|Ga0126384_11444878	Not Available	643	Open in IMG/M
3300010048\|Ga0126373_11314094	Not Available	789	Open in IMG/M
3300010359\|Ga0126376_10211460	Not Available	1617	Open in IMG/M
3300010359\|Ga0126376_13029486	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	519	Open in IMG/M
3300010361\|Ga0126378_10817599	Not Available	1041	Open in IMG/M
3300010361\|Ga0126378_11356412	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	805	Open in IMG/M
3300010361\|Ga0126378_11761230	Not Available	704	Open in IMG/M
3300010366\|Ga0126379_10920809	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium paxllaeri	977	Open in IMG/M
3300010376\|Ga0126381_101970406	Not Available	842	Open in IMG/M
3300010376\|Ga0126381_103399119	Not Available	626	Open in IMG/M
3300010398\|Ga0126383_10767893	All Organisms → cellular organisms → Bacteria	1045	Open in IMG/M
3300010398\|Ga0126383_10985223	Not Available	931	Open in IMG/M
3300010398\|Ga0126383_11030986	Not Available	911	Open in IMG/M
3300010863\|Ga0124850_1000633	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	8246	Open in IMG/M
3300010863\|Ga0124850_1024967	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1918	Open in IMG/M
3300012202\|Ga0137363_11693560	Not Available	525	Open in IMG/M
3300012211\|Ga0137377_11667128	Not Available	560	Open in IMG/M
3300012917\|Ga0137395_11160046	Not Available	543	Open in IMG/M
3300012948\|Ga0126375_10126078	Not Available	1571	Open in IMG/M
3300012948\|Ga0126375_11331660	Not Available	605	Open in IMG/M
3300012971\|Ga0126369_13550563	Not Available	511	Open in IMG/M
3300016270\|Ga0182036_10325523	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1177	Open in IMG/M
3300016294\|Ga0182041_10214485	Not Available	1542	Open in IMG/M
3300016294\|Ga0182041_10458506	Not Available	1097	Open in IMG/M
3300016294\|Ga0182041_10927742	Not Available	784	Open in IMG/M
3300016319\|Ga0182033_10039161	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	3110	Open in IMG/M
3300016319\|Ga0182033_10177339	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1673	Open in IMG/M
3300016319\|Ga0182033_10325076	Not Available	1278	Open in IMG/M
3300016357\|Ga0182032_10180584	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1590	Open in IMG/M
3300016387\|Ga0182040_10116948	Not Available	1842	Open in IMG/M
3300016387\|Ga0182040_11262441	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	623	Open in IMG/M
3300016404\|Ga0182037_10090990	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2170	Open in IMG/M
3300016404\|Ga0182037_10555146	Not Available	970	Open in IMG/M
3300016422\|Ga0182039_12019009	Not Available	531	Open in IMG/M
3300016445\|Ga0182038_10619436	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	936	Open in IMG/M
3300018433\|Ga0066667_11609508	Not Available	579	Open in IMG/M
3300019890\|Ga0193728_1306543	All Organisms → cellular organisms → Bacteria	599	Open in IMG/M
3300021168\|Ga0210406_10698049	All Organisms → cellular organisms → Bacteria	782	Open in IMG/M
3300021560\|Ga0126371_12117566	Not Available	678	Open in IMG/M
3300021560\|Ga0126371_13672454	Not Available	518	Open in IMG/M
3300025910\|Ga0207684_10074927	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2876	Open in IMG/M
3300025910\|Ga0207684_10467198	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 131	1083	Open in IMG/M
3300025928\|Ga0207700_10175590	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1790	Open in IMG/M
3300026552\|Ga0209577_10413559	Not Available	964	Open in IMG/M
3300026552\|Ga0209577_10566791	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	710	Open in IMG/M
3300027862\|Ga0209701_10461694	All Organisms → cellular organisms → Bacteria	697	Open in IMG/M
3300028715\|Ga0307313_10221397	All Organisms → cellular organisms → Bacteria	588	Open in IMG/M
3300031545\|Ga0318541_10203387	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1096	Open in IMG/M
3300031545\|Ga0318541_10461940	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	710	Open in IMG/M
3300031545\|Ga0318541_10503110	Not Available	678	Open in IMG/M
3300031545\|Ga0318541_10784611	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	531	Open in IMG/M
3300031564\|Ga0318573_10708024	Not Available	541	Open in IMG/M
3300031572\|Ga0318515_10686136	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	542	Open in IMG/M
3300031573\|Ga0310915_10649771	Not Available	746	Open in IMG/M
3300031668\|Ga0318542_10157085	Not Available	1133	Open in IMG/M
3300031668\|Ga0318542_10463682	Not Available	657	Open in IMG/M
3300031680\|Ga0318574_10871781	Not Available	527	Open in IMG/M
3300031713\|Ga0318496_10556451	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	634	Open in IMG/M
3300031719\|Ga0306917_11043855	Not Available	637	Open in IMG/M
3300031723\|Ga0318493_10798625	Not Available	531	Open in IMG/M
3300031724\|Ga0318500_10043061	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1881	Open in IMG/M
3300031744\|Ga0306918_10080246	Not Available	2269	Open in IMG/M
3300031744\|Ga0306918_10202013	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1498	Open in IMG/M
3300031744\|Ga0306918_10228081	All Organisms → cellular organisms → Bacteria	1414	Open in IMG/M
3300031747\|Ga0318502_10477481	Not Available	746	Open in IMG/M
3300031748\|Ga0318492_10380646	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	741	Open in IMG/M
3300031751\|Ga0318494_10773586	Not Available	562	Open in IMG/M
3300031768\|Ga0318509_10023197	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2937	Open in IMG/M
3300031768\|Ga0318509_10418591	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	749	Open in IMG/M
3300031770\|Ga0318521_10229771	All Organisms → cellular organisms → Bacteria	1078	Open in IMG/M
3300031771\|Ga0318546_10740994	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	691	Open in IMG/M
3300031777\|Ga0318543_10082595	All Organisms → cellular organisms → Bacteria	1362	Open in IMG/M
3300031777\|Ga0318543_10297396	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Sinorhizobium phage PBC5	722	Open in IMG/M
3300031779\|Ga0318566_10442318	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	638	Open in IMG/M
3300031793\|Ga0318548_10423380	Not Available	652	Open in IMG/M
3300031794\|Ga0318503_10240164	Not Available	588	Open in IMG/M
3300031819\|Ga0318568_10728178	Not Available	616	Open in IMG/M
3300031819\|Ga0318568_10937302	Not Available	535	Open in IMG/M
3300031821\|Ga0318567_10235252	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1027	Open in IMG/M
3300031845\|Ga0318511_10263161	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	775	Open in IMG/M
3300031880\|Ga0318544_10282157	Not Available	644	Open in IMG/M
3300031890\|Ga0306925_10374893	Not Available	1527	Open in IMG/M
3300031890\|Ga0306925_10577490	Not Available	1189	Open in IMG/M
3300031910\|Ga0306923_10415289	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1530	Open in IMG/M
3300031910\|Ga0306923_10513759	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1353	Open in IMG/M
3300031910\|Ga0306923_12192234	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	554	Open in IMG/M
3300031912\|Ga0306921_10704126	Not Available	1160	Open in IMG/M
3300031945\|Ga0310913_10027457	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	3599	Open in IMG/M
3300031945\|Ga0310913_10361869	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1027	Open in IMG/M
3300031946\|Ga0310910_10312933	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1236	Open in IMG/M
3300031947\|Ga0310909_10219053	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Magnetospirillum → Magnetospirillum gryphiswaldense → Magnetospirillum gryphiswaldense MSR-1	1585	Open in IMG/M
3300031947\|Ga0310909_10661897	Not Available	869	Open in IMG/M
3300032059\|Ga0318533_11229782	Not Available	548	Open in IMG/M
3300032060\|Ga0318505_10624569	Not Available	506	Open in IMG/M
3300032063\|Ga0318504_10602214	Not Available	528	Open in IMG/M
3300032261\|Ga0306920_101416802	All Organisms → cellular organisms → Bacteria	995	Open in IMG/M
3300033289\|Ga0310914_10481980	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1122	Open in IMG/M
3300033290\|Ga0318519_10984896	Not Available	523	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.73%
Host-Associated	Host-Associated	1.52%
Engineered	Engineered	0.76%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	97.73%
Plants	Host-Associated → Plants	1.52%
Solid Waste	Engineered → Solid Waste	0.76%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	97.73%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.52%
Grass	Engineered → Solid Waste → Grass	0.76%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	79.55%
Loam	Environmental → Terrestrial → Soil → Loam	18.18%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.52%
Composting	Engineered → Solid Waste → Grass → Composting	0.76%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	51.52%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.97%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	12.88%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.30%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.30%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.52%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.76%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.76%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	31.06%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	18.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	16.67%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	12.88%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.30%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.55%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.03%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.52%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.52%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.76%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.76%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.76%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.76%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459014	Litter degradation PV2	Engineered	Open in IMG/M
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006606	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010863	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028715	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
2PV_02375270	2170459014	Switchgrass, Maize And Mischanthus Litter	VLFAIGSALTLAVFFLALWLLPFETFTPFPFPRFHGFF
ICChiseqgaiiDRAFT_22730042	3300000033	Soil	LFGIGSVVSLAVFFLALWLLPFETFTPFPFPRFPGFP*
AF_2010_repII_A100DRAFT_10313753	3300000655	Forest Soil	RSQLRELMLLFVVGSALTLAVFFLALLLLPFKTFTPFPLRPGLFLHTV*
AF_2010_repII_A001DRAFT_101340861	3300000793	Forest Soil	VVLFAISSALTRAVFFLALWLLPFETFTPFPFPRFPEF
Ga0066395_100241433	3300004633	Tropical Forest Soil	MLLFVIGSALTVAVFFLALWLLPFQTFTPFLFPRIPGFL*
Ga0066388_1008810181	3300005332	Tropical Forest Soil	VLFAISSALTLAVFFLALWLLPFERFPPFSSPRFPGFPLI*
Ga0066388_1009488182	3300005332	Tropical Forest Soil	MALFVVGSALTVAVFFLALWLLPEQPFIPFSLSRFPGLF*
Ga0066388_1085497032	3300005332	Tropical Forest Soil	SQLRELMLLFVVGSALTLAVFFLALLLLPFETFTPFPFPRPPGFF*
Ga0008090_100873101	3300005363	Tropical Rainforest Soil	MLFAICSALTLAVFFLALWLLPFERLPLFSFPRFPGFPLI*
Ga0070707_1001996283	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MLFAICSALTLAVFSLALWLLPFERLPLFSFPRFPGFPLI*
Ga0070698_1001355961	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MVLLVVGSALTLAVFFLALWLLPFETFTPFPFPRFPGFF*
Ga0066694_101626171	3300005574	Soil	RELIVLLAIGSALTVAVFFLALWLLPFETFTPFPFPRFPGLP*
Ga0066905_1004956893	3300005713	Tropical Forest Soil	FAICSALTLAVFFLALWLLPFERLPLFSFPRFPGFPLI*
Ga0066905_1006022442	3300005713	Tropical Forest Soil	MLLFVVGSALTLAVFFLALLLLPFETFTPFPFPRSPGFF*
Ga0066905_1022847832	3300005713	Tropical Forest Soil	FVVGSALTLAVFFLALLLLPFETFTPFPFPRSPGFF*
Ga0066903_1016884303	3300005764	Tropical Forest Soil	MVLLVVGSALTLAVFFLALLVLPFETFTPFSFPRFPGFF*
Ga0066903_1019243891	3300005764	Tropical Forest Soil	MALVMVGSALTVAVFFLALWLLPEQPFIPFSFPRFPGLF*
Ga0066903_1019469852	3300005764	Tropical Forest Soil	MALFVVGSALTVAVFFLALWLLPEQPFIPFHFPRFPGLF*
Ga0066903_1028717043	3300005764	Tropical Forest Soil	MALVVVGSALTVAVFFLALWLLPEQPFIPFSLPRFPGLF*
Ga0066903_1061538351	3300005764	Tropical Forest Soil	QLRELMVLFVVSWAVTLAVFFLAPFEMFTRFPFPRFPAFF*
Ga0066903_1078975881	3300005764	Tropical Forest Soil	FVVGSALTLAVFFLALLLLPFETFTPVPFPRFPGFF*
Ga0066903_1083666062	3300005764	Tropical Forest Soil	VGSALTLAVFFLALLLLPFETFTPFHFPRFPGFF*
Ga0066903_1083856992	3300005764	Tropical Forest Soil	MVLFVVGSALTLAVFLLALWLLPFETFTPFPFPRFPGFF*
Ga0070717_100552846	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	FGIGSVVSLAVFFLALWLLPFETFTPFPFPRFPGFP*
Ga0066696_103517061	3300006032	Soil	VGSALTLAVFFLALLLLPFETFTPFPFPRFPGFF*
Ga0070712_1007820262	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MLFAICSALTLAVFFLALWLLPFERLPLFSFPRFPGFPLIRTLLF*
Ga0074062_122727141	3300006606	Soil	FAISSALTLAVFFLALWLLPFETFTPFPFPRFPGFPLI*
Ga0066660_107110311	3300006800	Soil	MVLFVVCSTLTLAIFFLALLLLSFETFTPFPFPRFP
Ga0075433_108003072	3300006852	Populus Rhizosphere	LVVLFGIGSVVTLAVFFLALWLLPSETFTPFPFPRFPGVF*
Ga0075434_1001222191	3300006871	Populus Rhizosphere	ELVVLFGIGSVVSLAVFFLALWLLPFETFTPFPFPRFPGFP*
Ga0126374_106584592	3300009792	Tropical Forest Soil	VLFAISSALTLAVFFIALWLLPFETFTPLPFPRFPGFF*
Ga0126374_116674051	3300009792	Tropical Forest Soil	MLFAICSALTLAVFLLALWLLPFERLPLFSFPRFPGFP
Ga0126380_102833591	3300010043	Tropical Forest Soil	MLLFVVGSALTLAVFFLALLLLPFETFTPFPFPRSPAFF*
Ga0126380_108359282	3300010043	Tropical Forest Soil	MLFAICSALTLAVFFLALWLLPFERLPLFSFPRFPGFSLI*
Ga0126384_114448781	3300010046	Tropical Forest Soil	VMLFAIGSALTIAVFFLALLLLPFETFTPVPFPRFPGFF*
Ga0126373_113140942	3300010048	Tropical Forest Soil	MLLFVVGSALTLAVFFLALLLLPFETFTPFSFPRSPGFF*
Ga0126376_102114603	3300010359	Tropical Forest Soil	VLFAVCSALTLAVFFLALWLLPFEIMPPSSFPKFPAFP*
Ga0126376_130294862	3300010359	Tropical Forest Soil	LFVVGSALTVAVFFLALWLLPFETFTRFPVLRFPGVP*
Ga0126378_108175992	3300010361	Tropical Forest Soil	MLLFVVGSALTLAVFFLALLLLPFETFTPFAFPRSPGFF*
Ga0126378_113564121	3300010361	Tropical Forest Soil	VVLFAVGSALTLAVFFLALWLLPFETFTPFPFPRFP
Ga0126378_117612301	3300010361	Tropical Forest Soil	MALFVVGSALTVAVFFLALWLLPEQPFIPFSFPRFPGLF*
Ga0126379_109208091	3300010366	Tropical Forest Soil	IVLFVVGSALTLAVFFLALWLLPFQTFTPFPFRFPGFL*
Ga0126381_1019704062	3300010376	Tropical Forest Soil	MALFVVGSALTVAVFFLALWLLPEQPFIPFSLLRFPGLF*
Ga0126381_1033991192	3300010376	Tropical Forest Soil	FAISSALTLAVFFLALWLLPFETFTRFPLSPFPALFN*
Ga0126383_107678931	3300010398	Tropical Forest Soil	AIGSALTLAVFFLALWLLPFETFTPFPFPRFPGFF*
Ga0126383_109852232	3300010398	Tropical Forest Soil	VGSALTLAVFFLALWLQPFETFAPFPFPRFPGFF*
Ga0126383_110309862	3300010398	Tropical Forest Soil	MLFVIGSALTVAVFFLALWLLPFDRFPPFSFLKFPALP*
Ga0124850_10006335	3300010863	Tropical Forest Soil	MLLFVVGSALTLAVFFLALLLVSFETFTPFPFPRSPGFF*
Ga0124850_10249671	3300010863	Tropical Forest Soil	VVLFAIGSAVTLAVFFLALWLMPFETFTSFPFPRFPGFF*
Ga0137363_116935602	3300012202	Vadose Zone Soil	VVLFAVGSTLTLAVFFLAHWLLPFERFPPFSFPRFPGFP*
Ga0137377_116671282	3300012211	Vadose Zone Soil	VLFAVGSALTLAVFFLALWLLPFETFTPFPFPRFHGFF*
Ga0137395_111600462	3300012917	Vadose Zone Soil	VLFAIGSALTLAVFFLALWLLPFETFTPFPFPRFPGFF*
Ga0126375_101260781	3300012948	Tropical Forest Soil	VVLCAIGSALTLAVFFLALWLLPFETFTPFPFPRF
Ga0126375_113316602	3300012948	Tropical Forest Soil	QLRELVVLFAVGSALTLAVFFLALWLLPFERFPPFSFPRFPGFP*
Ga0126369_135505631	3300012971	Tropical Forest Soil	MLLFVVGSALTLAVFFLALLLLPFETFTPFPFPRS
Ga0182036_103255231	3300016270	Soil	SRGQLRELTVLFVVGSTLTLAIFFLALLLLPFETFTPFPFPRFPGSF
Ga0182041_102144851	3300016294	Soil	VVLFAISSALTLAVFFLALWLLPFETFTRFPLPRFPAL
Ga0182041_104585061	3300016294	Soil	LRELMVLFVVGSALTLAVFFLALLLLPFETFTPVPFPRFPGFF
Ga0182041_109277423	3300016294	Soil	RELVVLFAISSALTLAVFFLALWLLPFETFTRFPLPRFPALFN
Ga0182033_100391616	3300016319	Soil	VLFAISSALTLAVFFLALWLLPFETFTPFPFPRSPWFF
Ga0182033_101773391	3300016319	Soil	VQLRELTVLFVVGSALTLAVFFLALLLLSFETFTPVPFPRFPGFF
Ga0182033_103250762	3300016319	Soil	MVLFVVGSTLTLAVFFLALLLLPFETFTPFSFPRFPGFF
Ga0182032_101805841	3300016357	Soil	VLFAISSALTLAVFFLALWLLPFEMFTRFPVPRFPALFN
Ga0182040_101169482	3300016387	Soil	MLLFVIGSALAVAVFFLALWLLPFETFTRFPVPRFPGLP
Ga0182040_112624412	3300016387	Soil	AISSALTLAVFFLALWLLPFETFTPFPFPRFPGLF
Ga0182037_100909901	3300016404	Soil	ELVVLFAISSALTLAVFFLALWLLPFEMFTRFPVPRFPALFN
Ga0182037_105551461	3300016404	Soil	LLFVVGSALTVTVFFLALWLLPFETFTRFPVLRFPGVP
Ga0182039_120190091	3300016422	Soil	MVLFVVGSALTLAVFFIALLLLPFETFTPVPFPRFPGFF
Ga0182038_106194361	3300016445	Soil	VMLFAICSALTLAVFFLALWLLPFERLPLFSFPQAHKR
Ga0066667_116095081	3300018433	Grasslands Soil	MVLFVVGSALTLAVFFLALFLLPFETFTPFPFPRFPGFF
Ga0193728_13065431	3300019890	Soil	VVLFGIGSVVTLAVFFLALWLLPFETFTPFPFPRFPGFP
Ga0210406_106980492	3300021168	Soil	MLFAICSALTLAVFFLALWLLPFERLPLFSFPRFPGFPLI
Ga0126371_121175661	3300021560	Tropical Forest Soil	RLRELVVLFGIGSVVTLAVFFLTLWLLPFEMFTPFPFPRFPGFF
Ga0126371_136724541	3300021560	Tropical Forest Soil	MALFVVGSALTVAVFFLALWLLPEQPFIPFSLLRFPGLF
Ga0207684_100749276	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MVLFVVGSALTLAVFFLAPLLLPFETFTPFPFPRFPGFF
Ga0207684_104671981	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MVLLVVGSALTLAVFFLALWLLPFETFTPFPFSRFPGFF
Ga0207700_101755903	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MVLFVVCSTLTLAVFFLALLLLPFETFNPFSFPRFPGFF
Ga0209577_104135593	3300026552	Soil	LRELVVLFGIGSVVSLAVFFLALWLLPFETFTPFPFPRFPGFP
Ga0209577_105667912	3300026552	Soil	LMVLFVVGSALTLAVFFLALLLLPFETFTPFPFPRFPGFF
Ga0209701_104616942	3300027862	Vadose Zone Soil	ELTELMVLFVVGSALTLAVFFLALWLLPFERFPPFSSPRFPGVPLI
Ga0307313_102213972	3300028715	Soil	LVVLFGIGSVVSLAVFFLALWLLPFETFTPFPFPRFPGFP
Ga0318541_102033872	3300031545	Soil	MALFVVGSAVTVAAFFLALWLLPEQPFSPFQFPRLPGLF
Ga0318541_104619401	3300031545	Soil	ELMVLYVVCSTLTLAIFFLALLLLPFETFTPFPFPRFPGSF
Ga0318541_105031103	3300031545	Soil	VLFLVGSALTLAVFFLAVLLLPFETFTPFPFPRFPGFF
Ga0318541_107846111	3300031545	Soil	MLLFVIGSALTVAVFFLALWLLPFQTFTPFLFPRIPGFL
Ga0318573_107080242	3300031564	Soil	VQLRELTVLFVVGSALTLAVFFLALLLLPFETFTPVPFPRFPGFF
Ga0318515_106861361	3300031572	Soil	MLLFVIGSALTVAVFFLALWLLPFQTFTPFAFPRIPGFL
Ga0310915_106497713	3300031573	Soil	VVLFAVGSALTLAVFFLALWLLPFETFTPFPFPRFPALFN
Ga0318542_101570852	3300031668	Soil	MLLFVIGSALTVAVFFLALWLLPFETFTRFPVLRFPGVP
Ga0318542_104636821	3300031668	Soil	FLVGSALTLAVFFLAVLLLPFETFTPFPFPRFPGFF
Ga0318574_108717812	3300031680	Soil	MVLVVVGSALTLAVFFIALLLLPFETFTPVPFPRFPGFF
Ga0318496_105564511	3300031713	Soil	LRELMVLVVVGSALTLAVFFIALLLLPFETFTPVPFPRFPGFF
Ga0306917_110438551	3300031719	Soil	MSRSQLRELMLLFVVGSALTLAVFFLALLLLPFETFTPFPFPRAPGFF
Ga0318493_107986252	3300031723	Soil	VLFAIGLALTLAVFFLALWLLPFETFTPFPFPRFPGSF
Ga0318500_100430612	3300031724	Soil	MLLFVIGSALTVAVFFLALWLLPFQMFTPFLFPRIPGFL
Ga0306918_100802462	3300031744	Soil	MVLFVVGSTLTLAVFFLALLLLPFETFTPFSFPRFPGLF
Ga0306918_102020133	3300031744	Soil	MVLFVVGSALAVFFIALLLLPFETFTPVPFPRFPGFF
Ga0306918_102280811	3300031744	Soil	MLLFVVGSALTLAVFFLALLLLPFETFTPFPFPRAPGFF
Ga0318502_104774811	3300031747	Soil	RAQLRELMVLFLVGSALTLAVFFLVVLLLPFETFTPFPFPRFPGFF
Ga0318492_103806461	3300031748	Soil	MLLLVIGSALTVAVFFLALWLLPFQMFTPFLFPRIPGFL
Ga0318494_107735862	3300031751	Soil	LRELTLLFVVSSALTVAVFFLALWLLPFETFTRFPVLRFPGVP
Ga0318509_100231975	3300031768	Soil	VVLFAISSALTLAVFFLALWLLPFETFTRFPLPRFPALFN
Ga0318509_104185911	3300031768	Soil	RELTALFMIGSALTVAVFFLALWLLPFETFTPFPFPRFPGLF
Ga0318521_102297712	3300031770	Soil	MLFAICSVLTLAVFFLALWLLPFERLPLFSFPRFSGFPLI
Ga0318546_107409941	3300031771	Soil	MLLFVIGSALTVAVFFLALWLLPFQTFTPFPFPRIPGFL
Ga0318543_100825951	3300031777	Soil	RELVMLFAICSALTLAVFFLALWLLPFERLPLFSFPRFPGFPLI
Ga0318543_102973961	3300031777	Soil	MSRAQLREVMVLVVVGSALTLAVFFIALLLLPFETFTPVPFPRFPGFF
Ga0318566_104423182	3300031779	Soil	VLFAIGLALALAVFFLALWLLPFETFTRRAVLRPAHV
Ga0318548_104233803	3300031793	Soil	VQLRELMVLFVVGSALTLAVFFLALLLLPFETFTPVPFPRFPGFF
Ga0318503_102401642	3300031794	Soil	VVLFAISSALTLAVFFLALWLLPFEMFTRFPVPRFPALFN
Ga0318568_107281782	3300031819	Soil	LRELMLLFVVGSALTLAVFFLALLLLPFETFTPFPFPRAPGFF
Ga0318568_109373022	3300031819	Soil	LRELVVLFAISSALTLAVFFVALWLLPFERFPPFSSPRFPGFPLI
Ga0318567_102352521	3300031821	Soil	MVLFVVCSTLTLAVFFFALLLLPFETFTPFPFPRFPGFF
Ga0318511_102631612	3300031845	Soil	RLRELMVLVVVGSALTLAVFFIALLLLPFETFTPVPFPRFPGFF
Ga0318544_102821572	3300031880	Soil	MALFVVGSAVTVAAFFLALWLLPEQPFIPFQFPRLPGLF
Ga0306925_103748932	3300031890	Soil	MLLFVVGSALTLAVFLLALWLLPFETFTPFPFPRFPGFF
Ga0306925_105774903	3300031890	Soil	VLFVVGSALTLAVFFLALLLLPFETFTPVPFPRFPGFF
Ga0306923_104152894	3300031910	Soil	MVVFVVGSALTLAVFFLALWLLPFETFTPFPFPRFPGFF
Ga0306923_105137593	3300031910	Soil	LVVLFAIGSALTLAVFFLAPWLLPYETFTPFPFPRFPGFF
Ga0306923_121922341	3300031910	Soil	LTVLFVVGSALTLAVFFLALFLLPFETFTPFPFPRFPGFF
Ga0306921_107041261	3300031912	Soil	VVLFAISSVLTLAVFFLALWLLPFETFTPFPFPRSP
Ga0310913_100274572	3300031945	Soil	MLLFVIGSALTVAVFFLALWLLPFETFTRFPVPRFPGLP
Ga0310913_103618693	3300031945	Soil	RARLRELVVLFAIGSALTLAVFFLALWLLPDKPFTTFLFPRFP
Ga0310910_103129331	3300031946	Soil	QLRELTALFMIGSALTVAVFFLALWLLPFETFTPFPFPRFPGLF
Ga0310909_102190531	3300031947	Soil	MVLFVVGSALTLAVFFLALLLLPFETFNPFSFPRFPGFF
Ga0310909_106618971	3300031947	Soil	VLFVISSALTLAVFFLALWLLPFETFTRFPLPRFPALFN
Ga0318533_112297821	3300032059	Soil	LLFVICSALTVAVFFLALWLLPFETFTRFSVLRFPGVP
Ga0318505_106245691	3300032060	Soil	FLVGSALTLAVFFLVVLLLPFETFTPFPFPRFPGFF
Ga0318504_106022142	3300032063	Soil	LRELMVLFVVCSTLTLAVFFLALWLLPFETFTPFPFPRFPGFF
Ga0306920_1014168021	3300032261	Soil	MLLFVVGSALTLAVFFLALLLLPFETFTPFPFPRAPGFFWFR
Ga0310914_104819804	3300033289	Soil	RELMVLVVVGSALTLAVFFIALLLLPFETFTPVPFPRFPGFF
Ga0318519_109848961	3300033290	Soil	MVLFVVSSALTLAVFFLALFLLPFETFTPFPFPRFPGSF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F061123

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences