Metagenome / Metatranscriptome Family F061083

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F061083
Family Type	Metagenome / Metatranscriptome
Number of Sequences	132
Average Sequence Length	38 residues
Representative Sequence	MIHRTFFLHYRLVREAVTTVVTIGTALLVSYLILWARL
Number of Associated Samples	98
Number of Associated Scaffolds	132

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	85.61 %
% of genes near scaffold ends (potentially truncated)	15.15 %
% of genes from short scaffolds (< 2000 bps)	69.70 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (53.788 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (15.909 % of family members)
Environment Ontology (ENVO)	Unclassified (24.242 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (48.485 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 53.03% β-sheet: 0.00% Coil/Unstructured: 46.97%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.50
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.50
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 132 Family Scaffolds
PF02954	HTH_8	23.48
PF08448	PAS_4	6.06
PF13188	PAS_8	6.06
PF01590	GAF	3.03
PF13492	GAF_3	3.03
PF14870	PSII_BNR	2.27
PF12698	ABC2_membrane_3	0.76
PF04185	Phosphoesterase	0.76
PF06182	ABC2_membrane_6	0.76
PF02738	MoCoBD_1	0.76
PF00753	Lactamase_B	0.76
PF02518	HATPase_c	0.76
PF00512	HisKA	0.76
PF12860	PAS_7	0.76
PF12679	ABC2_membrane_2	0.76
PF00005	ABC_tran	0.76
PF00145	DNA_methylase	0.76
PF04055	Radical_SAM	0.76
PF04365	BrnT_toxin	0.76

COG ID	Name	Functional Category	% Frequency in 132 Family Scaffolds
COG0270	DNA-cytosine methylase	Replication, recombination and repair [L]	0.76
COG2929	Ribonuclease BrnT, toxin component of the BrnT-BrnA toxin-antitoxin system	Defense mechanisms [V]	0.76
COG3511	Phospholipase C	Cell wall/membrane/envelope biogenesis [M]	0.76
COG3694	ABC-type uncharacterized transport system, permease component	General function prediction only [R]	0.76

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.79 %
All Organisms	root	All Organisms	46.21 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.79 %
cellular organisms	root	All Organisms → cellular organisms	46.21 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.79 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	46.21 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.79 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	28.79 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.52 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.79 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	5.30 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	3.79 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	1.52 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.79 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.30 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	3.03 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.52 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.79 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.30 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3.03 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.76 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.79 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.30 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	0.76 %
Sorangiineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae	0.76 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.79 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.30 %
Acidobacteriaceae bacterium URHE0068	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068	0.76 %
Polyangiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae	0.76 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.79 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.30 %
unclassified Polyangiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → unclassified Polyangiaceae	0.76 %
Acidobacteriaceae bacterium URHE0068	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068	0.76 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.79 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.30 %
Polyangiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → unclassified Polyangiaceae → Polyangiaceae bacterium	0.76 %
Acidobacteriaceae bacterium URHE0068	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068	0.76 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.76 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000567\|JGI12270J11330_10017692	All Organisms → cellular organisms → Bacteria	4491	Open in IMG/M
3300005534\|Ga0070735_10002090	All Organisms → cellular organisms → Bacteria	18401	Open in IMG/M
3300005534\|Ga0070735_10296640	Not Available	975	Open in IMG/M
3300005538\|Ga0070731_10013085	All Organisms → cellular organisms → Bacteria	6004	Open in IMG/M
3300005541\|Ga0070733_10567267	Not Available	760	Open in IMG/M
3300005542\|Ga0070732_10004423	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	7601	Open in IMG/M
3300005542\|Ga0070732_10264229	Not Available	1031	Open in IMG/M
3300005542\|Ga0070732_10562208	Not Available	692	Open in IMG/M
3300005602\|Ga0070762_10515729	Not Available	785	Open in IMG/M
3300005764\|Ga0066903_101609760	All Organisms → cellular organisms → Bacteria → Acidobacteria	1232	Open in IMG/M
3300005921\|Ga0070766_10001381	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068	11859	Open in IMG/M
3300005921\|Ga0070766_10288606	Not Available	1051	Open in IMG/M
3300006050\|Ga0075028_100267806	Not Available	943	Open in IMG/M
3300006059\|Ga0075017_100615090	Not Available	831	Open in IMG/M
3300006176\|Ga0070765_100416948	Not Available	1255	Open in IMG/M
3300009088\|Ga0099830_10731949	Not Available	815	Open in IMG/M
3300009089\|Ga0099828_10020846	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5114	Open in IMG/M
3300009672\|Ga0116215_1032629	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2397	Open in IMG/M
3300010379\|Ga0136449_100120748	All Organisms → cellular organisms → Bacteria → Acidobacteria	5269	Open in IMG/M
3300010379\|Ga0136449_100564997	All Organisms → cellular organisms → Bacteria	1951	Open in IMG/M
3300010379\|Ga0136449_101468154	All Organisms → cellular organisms → Bacteria → Acidobacteria	1047	Open in IMG/M
3300010379\|Ga0136449_102252819	Not Available	792	Open in IMG/M
3300010379\|Ga0136449_102965178	Not Available	664	Open in IMG/M
3300011120\|Ga0150983_12165245	Not Available	579	Open in IMG/M
3300011270\|Ga0137391_10538382	Not Available	985	Open in IMG/M
3300011270\|Ga0137391_11318255	Not Available	569	Open in IMG/M
3300012189\|Ga0137388_10133278	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2179	Open in IMG/M
3300012361\|Ga0137360_10681106	Not Available	882	Open in IMG/M
3300012931\|Ga0153915_10359200	Not Available	1640	Open in IMG/M
3300012931\|Ga0153915_12025462	Not Available	674	Open in IMG/M
3300012944\|Ga0137410_10249807	All Organisms → cellular organisms → Bacteria → Acidobacteria	1390	Open in IMG/M
3300014152\|Ga0181533_1123759	Not Available	1102	Open in IMG/M
3300014156\|Ga0181518_10261353	Not Available	875	Open in IMG/M
3300014158\|Ga0181521_10491945	Not Available	588	Open in IMG/M
3300014159\|Ga0181530_10195436	All Organisms → cellular organisms → Bacteria → Acidobacteria	1117	Open in IMG/M
3300014162\|Ga0181538_10124412	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1499	Open in IMG/M
3300014164\|Ga0181532_10198605	Not Available	1177	Open in IMG/M
3300014169\|Ga0181531_10603024	Not Available	681	Open in IMG/M
3300014495\|Ga0182015_10454443	Not Available	822	Open in IMG/M
3300014654\|Ga0181525_10387419	Not Available	767	Open in IMG/M
3300014657\|Ga0181522_10352187	All Organisms → cellular organisms → Bacteria → Acidobacteria	877	Open in IMG/M
3300015051\|Ga0137414_1162198	Not Available	4223	Open in IMG/M
3300017822\|Ga0187802_10085347	All Organisms → cellular organisms → Bacteria → Acidobacteria	1179	Open in IMG/M
3300017822\|Ga0187802_10192678	All Organisms → cellular organisms → Bacteria → Acidobacteria	783	Open in IMG/M
3300017927\|Ga0187824_10001566	All Organisms → cellular organisms → Bacteria → Acidobacteria	5740	Open in IMG/M
3300017927\|Ga0187824_10013058	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2402	Open in IMG/M
3300017927\|Ga0187824_10168929	Not Available	732	Open in IMG/M
3300017927\|Ga0187824_10363157	Not Available	524	Open in IMG/M
3300017928\|Ga0187806_1040698	Not Available	1397	Open in IMG/M
3300017930\|Ga0187825_10026954	All Organisms → cellular organisms → Bacteria → Acidobacteria	1934	Open in IMG/M
3300017930\|Ga0187825_10240341	Not Available	661	Open in IMG/M
3300017936\|Ga0187821_10076391	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1218	Open in IMG/M
3300017943\|Ga0187819_10270802	All Organisms → cellular organisms → Bacteria → Acidobacteria	991	Open in IMG/M
3300017948\|Ga0187847_10240529	Not Available	986	Open in IMG/M
3300017994\|Ga0187822_10280195	Not Available	582	Open in IMG/M
3300017995\|Ga0187816_10303579	Not Available	701	Open in IMG/M
3300018022\|Ga0187864_10494537	Not Available	514	Open in IMG/M
3300018046\|Ga0187851_10316968	Not Available	902	Open in IMG/M
3300018047\|Ga0187859_10230727	Not Available	991	Open in IMG/M
3300018047\|Ga0187859_10630304	Not Available	606	Open in IMG/M
3300019268\|Ga0181514_1249753	Not Available	528	Open in IMG/M
3300019786\|Ga0182025_1317126	All Organisms → cellular organisms → Bacteria → Acidobacteria	1787	Open in IMG/M
3300020199\|Ga0179592_10027485	All Organisms → cellular organisms → Bacteria → Acidobacteria	2557	Open in IMG/M
3300020579\|Ga0210407_10276517	Not Available	1310	Open in IMG/M
3300020581\|Ga0210399_10030719	All Organisms → cellular organisms → Bacteria	4289	Open in IMG/M
3300020581\|Ga0210399_10228841	All Organisms → cellular organisms → Bacteria → Acidobacteria	1549	Open in IMG/M
3300020581\|Ga0210399_10767252	All Organisms → cellular organisms → Bacteria → Acidobacteria	789	Open in IMG/M
3300020581\|Ga0210399_11021598	Not Available	665	Open in IMG/M
3300020582\|Ga0210395_10368277	All Organisms → cellular organisms → Bacteria → Acidobacteria	1081	Open in IMG/M
3300020583\|Ga0210401_10000779	All Organisms → cellular organisms → Bacteria	38516	Open in IMG/M
3300020583\|Ga0210401_11047694	Not Available	674	Open in IMG/M
3300021086\|Ga0179596_10395281	Not Available	697	Open in IMG/M
3300021086\|Ga0179596_10628916	Not Available	544	Open in IMG/M
3300021168\|Ga0210406_10364899	Not Available	1163	Open in IMG/M
3300021168\|Ga0210406_10746317	Not Available	750	Open in IMG/M
3300021178\|Ga0210408_10004254	All Organisms → cellular organisms → Bacteria → Acidobacteria	12833	Open in IMG/M
3300021180\|Ga0210396_10024235	All Organisms → cellular organisms → Bacteria	5622	Open in IMG/M
3300021407\|Ga0210383_10588712	Not Available	959	Open in IMG/M
3300021420\|Ga0210394_10016770	All Organisms → cellular organisms → Bacteria	6912	Open in IMG/M
3300021432\|Ga0210384_10024982	All Organisms → cellular organisms → Bacteria	5661	Open in IMG/M
3300021432\|Ga0210384_10033988	All Organisms → cellular organisms → Bacteria	4738	Open in IMG/M
3300021476\|Ga0187846_10006734	All Organisms → cellular organisms → Bacteria	5738	Open in IMG/M
3300021477\|Ga0210398_11429477	Not Available	540	Open in IMG/M
3300021478\|Ga0210402_10283262	Not Available	1533	Open in IMG/M
3300021479\|Ga0210410_11393914	Not Available	594	Open in IMG/M
3300021559\|Ga0210409_10004148	All Organisms → cellular organisms → Bacteria → Acidobacteria	15772	Open in IMG/M
3300021560\|Ga0126371_10453247	Not Available	1429	Open in IMG/M
3300021861\|Ga0213853_11092297	Not Available	1347	Open in IMG/M
3300024227\|Ga0228598_1130776	Not Available	511	Open in IMG/M
3300025679\|Ga0207933_1020250	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2847	Open in IMG/M
3300026514\|Ga0257168_1076532	Not Available	741	Open in IMG/M
3300027565\|Ga0209219_1027204	All Organisms → cellular organisms → Bacteria → Acidobacteria	1416	Open in IMG/M
3300027674\|Ga0209118_1024442	All Organisms → cellular organisms → Bacteria → Acidobacteria	1897	Open in IMG/M
3300027674\|Ga0209118_1050714	Not Available	1228	Open in IMG/M
3300027854\|Ga0209517_10014315	All Organisms → cellular organisms → Bacteria	8143	Open in IMG/M
3300027869\|Ga0209579_10039160	All Organisms → cellular organisms → Bacteria	2556	Open in IMG/M
3300027875\|Ga0209283_10059502	All Organisms → cellular organisms → Bacteria → Acidobacteria	2447	Open in IMG/M
3300027895\|Ga0209624_10925005	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → unclassified Polyangiaceae → Polyangiaceae bacterium	568	Open in IMG/M
3300027905\|Ga0209415_10044943	All Organisms → cellular organisms → Bacteria	5850	Open in IMG/M
3300027905\|Ga0209415_10098561	All Organisms → cellular organisms → Bacteria → Acidobacteria	3224	Open in IMG/M
3300027908\|Ga0209006_10583784	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	925	Open in IMG/M
3300027910\|Ga0209583_10618881	Not Available	554	Open in IMG/M
3300027986\|Ga0209168_10000561	All Organisms → cellular organisms → Bacteria	34609	Open in IMG/M
3300028792\|Ga0307504_10101276	Not Available	918	Open in IMG/M
3300028800\|Ga0265338_10218315	Not Available	1426	Open in IMG/M
3300028800\|Ga0265338_10458055	Not Available	902	Open in IMG/M
3300028906\|Ga0308309_10687880	Not Available	889	Open in IMG/M
3300031234\|Ga0302325_10059453	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	7507	Open in IMG/M
3300031234\|Ga0302325_11137153	Not Available	1047	Open in IMG/M
3300031236\|Ga0302324_100867030	Not Available	1247	Open in IMG/M
3300031525\|Ga0302326_10063149	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6928	Open in IMG/M
3300031670\|Ga0307374_10010059	All Organisms → cellular organisms → Bacteria	13801	Open in IMG/M
3300031708\|Ga0310686_101186642	All Organisms → cellular organisms → Bacteria	7037	Open in IMG/M
3300031708\|Ga0310686_104456233	All Organisms → cellular organisms → Bacteria	23360	Open in IMG/M
3300031708\|Ga0310686_108440175	All Organisms → cellular organisms → Bacteria → Acidobacteria	2407	Open in IMG/M
3300031708\|Ga0310686_113813431	All Organisms → cellular organisms → Bacteria → Acidobacteria	1872	Open in IMG/M
3300031715\|Ga0307476_10031929	All Organisms → cellular organisms → Bacteria → Acidobacteria	3506	Open in IMG/M
3300031718\|Ga0307474_11545897	Not Available	522	Open in IMG/M
3300031753\|Ga0307477_11026039	Not Available	540	Open in IMG/M
3300031902\|Ga0302322_103018107	Not Available	579	Open in IMG/M
3300031962\|Ga0307479_10252610	All Organisms → cellular organisms → Bacteria → Acidobacteria	1741	Open in IMG/M
3300031962\|Ga0307479_10649144	Not Available	1036	Open in IMG/M
3300032160\|Ga0311301_10061204	All Organisms → cellular organisms → Bacteria	8218	Open in IMG/M
3300032160\|Ga0311301_11603781	Not Available	792	Open in IMG/M
3300032174\|Ga0307470_10163867	Not Available	1377	Open in IMG/M
3300032180\|Ga0307471_100004860	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	8313	Open in IMG/M
3300032180\|Ga0307471_102033573	Not Available	721	Open in IMG/M
3300032180\|Ga0307471_103272498	Not Available	574	Open in IMG/M
3300032205\|Ga0307472_100133507	Not Available	1781	Open in IMG/M
3300032770\|Ga0335085_10003239	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	28591	Open in IMG/M
3300033486\|Ga0316624_10396817	Not Available	1152	Open in IMG/M
3300034282\|Ga0370492_0013506	All Organisms → cellular organisms → Bacteria	3341	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.73%
Host-Associated	Host-Associated	2.27%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	71.97%
Aquatic	Environmental → Aquatic	25.76%
Plants	Host-Associated → Plants	2.27%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	67.42%
Freshwater	Environmental → Aquatic → Freshwater	23.48%
Peat	Environmental → Terrestrial → Peat	3.79%
Sediment	Environmental → Aquatic → Sediment	2.27%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.27%
Cave	Environmental → Terrestrial → Cave	0.76%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	53.79%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	22.73%
Loam	Environmental → Terrestrial → Soil → Loam	9.09%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.79%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	3.79%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.27%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.52%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.76%
Clay	Environmental → Terrestrial → Soil → Clay	0.76%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.76%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.55%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	23.48%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	11.36%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	9.85%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.09%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	3.79%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.27%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.27%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.52%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.52%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.52%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.76%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.76%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	0.76%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.76%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	15.91%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	9.85%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	9.09%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	9.09%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	7.58%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	6.82%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	6.82%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	4.55%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.79%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.79%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	3.03%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.27%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	1.52%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.52%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	1.52%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.76%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.76%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.76%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.76%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.76%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.76%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.76%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	0.76%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.76%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.76%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.76%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009672	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014152	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_60_metaG	Environmental	Open in IMG/M
3300014156	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG	Environmental	Open in IMG/M
3300014158	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaG	Environmental	Open in IMG/M
3300014159	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG	Environmental	Open in IMG/M
3300014162	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaG	Environmental	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014654	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300015051	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017927	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4	Environmental	Open in IMG/M
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300017936	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300017994	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018022	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_40	Environmental	Open in IMG/M
3300018046	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300019268	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019786	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction)	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021476	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300021861	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2016 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300024227	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4	Host-Associated	Open in IMG/M
3300025679	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-3 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300026514	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-B	Environmental	Open in IMG/M
3300027565	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M1 (SPAdes)	Environmental	Open in IMG/M
3300027674	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300027986	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031670	Soil microbial communities from Risofladan, Vaasa, Finland - OX-3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031902	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_2	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300033486	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_N3_C1_D5_A	Environmental	Open in IMG/M
3300034282	Peat soil microbial communities from wetlands in Alaska, United States - Eight_mile_03D_16	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12270J11330_100176922	3300000567	Peatlands Soil	MIHRTMFLHYRVVSEAVTTLVTIGVALLFSYLILWARL*
Ga0070735_1000209013	3300005534	Surface Soil	MIERAYFLHYRLIREVIALAVTIGAAGLGSYLILWTHL*
Ga0070735_102966401	3300005534	Surface Soil	MIYRTLFLHYRVVSEAVTTLVTIGAALLFSYLILWARL*
Ga0070731_100130857	3300005538	Surface Soil	MIHRTFFLHYRPIREAITTAVGVGIAFLVSYLILWARP*
Ga0070733_105672671	3300005541	Surface Soil	MIPRTFFSHYRLVCEAITNVVTIGGALLLSYLILWARL*
Ga0070732_100044236	3300005542	Surface Soil	MIHRTLFLHYRLVREATTALVTIGTALLFSYLILWARL*
Ga0070732_102642292	3300005542	Surface Soil	MANGEEGDAMLRQKLFLHYRFVREAITVAVTIGAALLASYLILRVRL*
Ga0070732_105622082	3300005542	Surface Soil	MAKGMGEAAMLRRQLYLHYRVVREAVTAVVTIGAALLLSYLILNARL*
Ga0070762_105157291	3300005602	Soil	MIQRAFFLHYRMVREAITIVVTLGTAALLGYLILWVRL*
Ga0066903_1016097602	3300005764	Tropical Forest Soil	MLRQKLFLHYRLIRDAITAVVTIGAALLASYLILRARL*
Ga0070766_100013818	3300005921	Soil	MIYRAYLLHYRGVQNAITILVTVGTALLASYLILWARL*
Ga0070766_102886062	3300005921	Soil	MIHRTFFLHYRLFLGAVTTAATIGAALLLSYLVLWARL*
Ga0075028_1002678062	3300006050	Watersheds	MIYRTYLLHYRRVQNAITILVTVGTALLVSYFILWARL*
Ga0075017_1006150902	3300006059	Watersheds	MIERTYFLHFRGIREVITAAVTVGAAFLASYLILWARP*
Ga0070765_1004169482	3300006176	Soil	VQDSGQEDAMIHRTFFLHYGLFLGAVTTAATIGAALLLSYLVLWARL*
Ga0099830_107319492	3300009088	Vadose Zone Soil	MLYRKYYLHYRLVREAITAVVTIGAALLFSYLILQVHS*
Ga0099828_100208462	3300009089	Vadose Zone Soil	MLQQKFYLNYRLVCEALTGVVTIGAALLFSYLILRVRS*
Ga0116215_10326291	3300009672	Peatlands Soil	SQEGAMIHRTMFLHYRVVSEAVTTLVTIGVALLFSYLILWARL*
Ga0136449_1001207483	3300010379	Peatlands Soil	MIHRILFLHYRVVSEAAITLVTIGVALLFSYLILWARL*
Ga0136449_1005649972	3300010379	Peatlands Soil	MIHRTLILHYRLVREAIATLVTIGAALLFSYLILWARL*
Ga0136449_1014681541	3300010379	Peatlands Soil	MIHRTMFLHYRLVSEAVTTLVTIGVALLFSYLILWARL*
Ga0136449_1022528192	3300010379	Peatlands Soil	MISRKFFLHYRLVRETLTAVVTIGTALLFSYLILRVRL*
Ga0136449_1029651782	3300010379	Peatlands Soil	MLYRKYLLHYHLVRETITAIVTIGTALLFSYLILQVRF*
Ga0150983_121652452	3300011120	Forest Soil	MIQRVFFLHYRQFRDALADMITIGTALLLSYLILWLRL*
Ga0137391_105383822	3300011270	Vadose Zone Soil	MYFLHYRLVREVITAVVTIGTALLFSYLILWARL*
Ga0137391_113182552	3300011270	Vadose Zone Soil	MFYRKFYIHYRLVREAITALLTIGAALLFSYLIVKVGS*
Ga0137388_101332782	3300012189	Vadose Zone Soil	HAREAPMLHRKFYLHYRLVREAITAVVTVGAALLFSYLILQVHS*
Ga0137360_106811061	3300012361	Vadose Zone Soil	MIRQTYYLHYRLVNGVIAGVVSIGTAVLLSYLILWARY*
Ga0153915_103592002	3300012931	Freshwater Wetlands	EAAVLYRKYLLHYRLVRETITAIVMIGTALLFSYLILQVRF*
Ga0153915_120254621	3300012931	Freshwater Wetlands	MIYPRDFLHRRFYLHYRLVREAIMAAVMVGAALLLSYLILQGHF*
Ga0137410_102498072	3300012944	Vadose Zone Soil	MIRRIYFMHYRLVNGAIATVATIGTALLLSYLILWARL*
Ga0181533_11237591	3300014152	Bog	DEAREAPMLYRTYLLHYRLVRETITAIVTIGTALLFSYLILQARF*
Ga0181518_102613532	3300014156	Bog	MISRKIFLHYRLVRETLTAVVTIGTALLFSYLILRVRL*
Ga0181521_104919451	3300014158	Bog	NGRQEAAMIHRTFFLHYRVVREVITSVVAVGTALLLSYLILWARL*
Ga0181530_101954362	3300014159	Bog	MIHRTFFLHYRVVREVITSVVAVGTALLLSYLILWARL*
Ga0181538_101244122	3300014162	Bog	MISRKIFLHYRLVRETLTAVVTIGTALLFSYLILRVRL
Ga0181532_101986052	3300014164	Bog	MLSRKFFLHYRLVREALTAVVTIGTALLFSYLILRVRL*
Ga0181531_106030242	3300014169	Bog	MSSRKIYLHYRLVRETVTALVTIGTALLFSYLILRVQL*
Ga0182015_104544432	3300014495	Palsa	MQASGGFAMISRQFYLHYRLVREALTAVVTVGTALLFSYLILRVR*
Ga0181525_103874192	3300014654	Bog	MISRKIYLHYRLVRETVTALVTIGTALLFSYLILRV
Ga0181522_103521872	3300014657	Bog	MIRRIYFLHYRMVHEAIAGVVGIGAALLLSYLILWVRL*
Ga0137414_11621985	3300015051	Vadose Zone Soil	MLHRRFFLHYRLVRESLTAIAAITGAAFLSYLILRARF*
Ga0187802_100853472	3300017822	Freshwater Sediment	MIQRTFFLHYRLVREAITTMVTVGTALLLSYLILWLRL
Ga0187802_101926781	3300017822	Freshwater Sediment	MILRAFFLHYRMIREAITVMVTIGTALLLSYLILSV
Ga0187824_100015662	3300017927	Freshwater Sediment	MIYRTLFLHYRVVSEAVTTLVTIGAALLFSYLILWARL
Ga0187824_100130582	3300017927	Freshwater Sediment	MIYRTYLLHYRQVQNAITILVTVGAALLASYLILWARP
Ga0187824_101689292	3300017927	Freshwater Sediment	MIHRTLFLHYQFLREAFVTAATLGAALLFSYLILWARL
Ga0187824_103631572	3300017927	Freshwater Sediment	MIQRTLFLHYGLLRELLTTLISIGVALLFSYLILWARL
Ga0187806_10406982	3300017928	Freshwater Sediment	MILRAFFLHYRMIREAITVMVTIGTALLLSYLILSVRL
Ga0187825_100269542	3300017930	Freshwater Sediment	MIYRTLFLHYRLVSEAVTTLVTIGAALLFSYLILWARL
Ga0187825_102403411	3300017930	Freshwater Sediment	MIQRTLFLHYGLVREALTTLVSIGAALLFSYLILWARL
Ga0187821_100763912	3300017936	Freshwater Sediment	MIHRTLFLHYQFLREAFVTAATLGAALLFGYLILWARL
Ga0187819_102708022	3300017943	Freshwater Sediment	MIHRTMFLHYRVVREAITTLVTIGAALLFSYLILWARL
Ga0187847_102405292	3300017948	Peatland	MLSRKFFLHYRLVREALTAVVTIGTALLFSYLILRVRL
Ga0187822_102801952	3300017994	Freshwater Sediment	MIHRTLLLHYQFLREAFVTAATLGAALLFSYLILWARL
Ga0187816_103035792	3300017995	Freshwater Sediment	MQYKWRREAVMIQRGFFLHYRMVREAITTMVTVGSALLLSYLIVWLRL
Ga0187864_104945372	3300018022	Peatland	MLYRTYLLHYRLVRETITAIVTIGTALLFSYLILQARF
Ga0187851_103169682	3300018046	Peatland	MIRRNYFLHYRMVHDAITAMAGIGAALLLSYLVLWVRL
Ga0187859_102307272	3300018047	Peatland	MISRKIYLHYRLVRETVTALVTIGTALLFSYLILRVQL
Ga0187859_106303042	3300018047	Peatland	MISRAYYLHYRLVSEGLTTAATIGTALLLGYLILWVRL
Ga0181514_12497532	3300019268	Peatland	PRKVMLHYRFVRDAITAVVTIGTALLLSYLILKVQL
Ga0182025_13171262	3300019786	Permafrost	MIHRTMFLHYRLVSEAVTTLVTIGVALLFSYLILWARL
Ga0179592_100274852	3300020199	Vadose Zone Soil	MIRQTYYLHYRLVNGVIAGVVSIGTAVLLSYLILWARY
Ga0210407_102765172	3300020579	Soil	MIRRTYFLHYRLVNGVIAGVVSIGTAVLLSYLILWARF
Ga0210399_100307192	3300020581	Soil	MIQRAFFLHYRMVRKAITIVVTLGTAALLGYLILWVRL
Ga0210399_102288412	3300020581	Soil	MIQRAYFLHYRLVREGITAAVTIGTAMLVSYLILWA
Ga0210399_107672521	3300020581	Soil	MIQRAFFLHYRMVREAITIMVTLGTAALLGYLILRMH
Ga0210399_110215982	3300020581	Soil	MIHRTFFLHYRLVLGAVTTAATIGAALLLSYLVLWARL
Ga0210395_103682771	3300020582	Soil	IMPRAMFLHYGLVRDALTTLVSIGAALLFSYLMLWARL
Ga0210401_100007792	3300020583	Soil	MIYRTYLLHYRRIQDAITILVTAGTALLLSYLIMWARL
Ga0210401_110476941	3300020583	Soil	MIYRAYLLHYRGVQNAITILVTVGTALLASYLILWARL
Ga0179596_103952812	3300021086	Vadose Zone Soil	MILRMYFLHYRLVREVITAVVTIGTALLFSYLILWARL
Ga0179596_106289161	3300021086	Vadose Zone Soil	MIQRAYFLHYRMVREAITIVVTLGTAALLSYLILWVRL
Ga0210406_103648991	3300021168	Soil	MIRRTYFLHYRLVNGVIAGVVSIGTAVLLSYLILWSRF
Ga0210406_107463171	3300021168	Soil	MIQRAYFLHYRLVREGITAAVTIGTAMLVSYLILWARL
Ga0210408_100042542	3300021178	Soil	MIQRAYFLHYRMVNDVITAVVTLGTAVLFSYLILWARL
Ga0210396_100242352	3300021180	Soil	MIQRVFFLHYRRFRDALAAMITIGTALLVSYLILWLRL
Ga0210383_105887122	3300021407	Soil	KEAAMLPRTFFLHYRLIREAVTTAITLGAALLLSYLILWARL
Ga0210394_100167703	3300021420	Soil	MIQRAMFLHYGLVRDALTTLVSIGAALLFSYLILWARL
Ga0210384_100249826	3300021432	Soil	MIYRTYLLHYRRVQNAITILVTVGTALLVSYFILWARL
Ga0210384_100339884	3300021432	Soil	MIHRAFFLHYRLVREAVTSTVTIGTALLLSYLILWARL
Ga0187846_100067342	3300021476	Biofilm	MRYRTLYLHYRLLREAITIAVTLATALLFSYLILQGRA
Ga0210398_114294771	3300021477	Soil	MIQRAFFLHYRMVREAITTMISVGTALLLSYLILWMRL
Ga0210402_102832622	3300021478	Soil	MIRRNYFLHYRLVNDAIATVAAIGTALLLSYLILWARL
Ga0210410_113939142	3300021479	Soil	MIQRAYFLHYRLVRERITAAVTIGTAMLVSYLILWARL
Ga0210409_100041489	3300021559	Soil	MIHRTFFLHYHTICEAFTNGLTIGTALLLGYLILSARL
Ga0126371_104532472	3300021560	Tropical Forest Soil	MLRQKLFLHYRLIRDAITAVVTIGAALLASYLILRARL
Ga0213853_110922972	3300021861	Watersheds	MIHRTLFLHYRLVREATTALVTIGTALLFSYLILWARL
Ga0228598_11307761	3300024227	Rhizosphere	MIQRTYFLHYRLVHEAITNVVTIGTALLLGYFILWARL
Ga0207933_10202502	3300025679	Arctic Peat Soil	MISRQFYLHYRLVREAITVVVMIGMALLLSYLILSVRL
Ga0257168_10765321	3300026514	Soil	MIQRTFFLHYRLFREVITTVVTIGTAVLVSYLILWARL
Ga0209219_10272042	3300027565	Forest Soil	MIHRTFFLHYRLVREAVTTVVTIGTALLVSYLILWARL
Ga0209118_10244422	3300027674	Forest Soil	MIHRAFFLHYRLVREAVTSTVTIGTALLLGYLILWARL
Ga0209118_10507141	3300027674	Forest Soil	MIHRTLFLHYRLVREAVTVLVTIGTALLFSYLILWAKL
Ga0209517_100143153	3300027854	Peatlands Soil	MIHRTMFLHYRVVSEAVTTLVTIGVALLFSYLILWARL
Ga0209579_100391602	3300027869	Surface Soil	MIHRTFFLHYRPIREAITTAVGVGIAFLVSYLILWARP
Ga0209283_100595022	3300027875	Vadose Zone Soil	MLQQKFYLNYRLVCEALTGVVTIGAALLFSYLILRVRS
Ga0209624_109250051	3300027895	Forest Soil	MIHRTFFLHYRVVREAITSVGTVGTALLLGYLILWAR
Ga0209415_100449433	3300027905	Peatlands Soil	MIHRTLILHYRLVREAIATLVTIGAALLFSYLILWARL
Ga0209415_100985611	3300027905	Peatlands Soil	MLYRKYLLHYRLVRETVTAIVTIGTALLFSYLILQVRF
Ga0209006_105837841	3300027908	Forest Soil	MIRRTYFSHYRMVNEAITGAVGVGAALLLSYLILWVRL
Ga0209583_106188811	3300027910	Watersheds	MIYRTYLLHYRRVQNAITILVTVGAALLVSYFILWARL
Ga0209168_1000056113	3300027986	Surface Soil	MIERAYFLHYRLIREVIALAVTIGAAGLGSYLILWTHL
Ga0307504_101012762	3300028792	Soil	MIQGTFYLHYRLVREAITNVVTIGTALLLSYLILWARL
Ga0265338_102183152	3300028800	Rhizosphere	MISRKVYLHYRLVREGLTAVVTIGTALLFSYLILRVQF
Ga0265338_104580552	3300028800	Rhizosphere	MISRKIFLHYRLVREALTAVVTIGTALLFSYLILRVRL
Ga0308309_106878801	3300028906	Soil	MIHRTFFLHYGLFLGAVTTAATIGAALLLSYLVLWARL
Ga0302325_100594532	3300031234	Palsa	MIRRTYFSHYRMIHEAITCTVGIGAALLLSYLILWVRL
Ga0302325_111371531	3300031234	Palsa	MISRKIFLHYRLVREMVTAVVTVGTALLFSYLILQVRL
Ga0302324_1008670302	3300031236	Palsa	MIRRAYFLHYRMVREAITGAVGIGAALLLSYLILWVRL
Ga0302326_100631491	3300031525	Palsa	MIRRTYFSHYRMIHEAITCTVGIGAALLLSYLILWVR
Ga0307374_100100597	3300031670	Soil	MISRQYYLHYRLVREAITVVVMIAMALLFSYLILSVRL
Ga0310686_1011866425	3300031708	Soil	MIHRTLFLHYSLVREAITTLVTVGAALLFGYLILWARL
Ga0310686_10445623317	3300031708	Soil	MIQRAFFMHYRMVREAITTMITVGTALLLSYLILWMRF
Ga0310686_1084401752	3300031708	Soil	MILRAFFLHYRMVRDAITITVTLGTAALLGYLILWMRL
Ga0310686_1138134312	3300031708	Soil	MIHRTLFLHYRLIREVITTLVAIGMALLFSYLILWARL
Ga0307476_100319293	3300031715	Hardwood Forest Soil	MLRQKLFLHYRFVREAITVAVTIGAALLASYLILRVRL
Ga0307474_115458972	3300031718	Hardwood Forest Soil	MANGEEGDAMLRQKLFLHYRFVREAITVAVTIGAALLASYLILRVRL
Ga0307477_110260391	3300031753	Hardwood Forest Soil	MIYRTYLLHYRRVQDAITILVTAGTALLLSYLILWARL
Ga0302322_1030181072	3300031902	Fen	MLYRSYLLHYRLVRETITAVVTIGTALLFSYLILQARF
Ga0307479_102526102	3300031962	Hardwood Forest Soil	MIQRTIFLHYRLVREAVTTVVAIGTALLLSYLILWARL
Ga0307479_106491441	3300031962	Hardwood Forest Soil	MLHRKFYLHYRLVREAITAVVTIGAALLYSYLILQVHS
Ga0311301_100612043	3300032160	Peatlands Soil	MIHRILFLHYRVVSEAAITLVTIGVALLFSYLILWARL
Ga0311301_116037811	3300032160	Peatlands Soil	MISRKFFLHYRLVRETLTAVVTIGTALLFSYLILRVRL
Ga0307470_101638671	3300032174	Hardwood Forest Soil	MERAYFLHYRVVREAILTAITIGTALLASYLILWARL
Ga0307471_1000048605	3300032180	Hardwood Forest Soil	MLYRKYYIRYRLVREAITAVVTIGAALLFSYLILQVHS
Ga0307471_1020335732	3300032180	Hardwood Forest Soil	RTYFLHYRLVNGVISGVVSIGTAVLLSYLILWSRF
Ga0307471_1032724981	3300032180	Hardwood Forest Soil	MIYRTYLLHYRRIQDAITILVTVGTALLLSYLIMWARL
Ga0307472_1001335072	3300032205	Hardwood Forest Soil	MIYRTYLLHYRRVQDAITILVTVGAALLLSFLILWARL
Ga0335085_100032397	3300032770	Soil	MVRQKLYLHYRLLREAVTAVVTIGTALLFSYLILRVRL
Ga0316624_103968171	3300033486	Soil	MMTGGCRDPSNIFFHYRVVCEAITGVVTIGTALLLSYLILWARL
Ga0370492_0013506_1198_1311	3300034282	Untreated Peat Soil	MRRSYFLHYRMVHEAITSMLGIGAALLLSYLILATGH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F061083

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences