Metagenome Family F061063

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F061063
Family Type	Metagenome
Number of Sequences	132
Average Sequence Length	60 residues
Representative Sequence	MHDEAVKQINPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLYALPSGSPEDSSK
Number of Associated Samples	84
Number of Associated Scaffolds	132

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	28.03 %
% of genes near scaffold ends (potentially truncated)	36.36 %
% of genes from short scaffolds (< 2000 bps)	85.61 %
Associated GOLD sequencing projects	74
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (65.909 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa (29.546 % of family members)
Environment Ontology (ENVO)	Unclassified (37.121 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (61.364 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 48.89% β-sheet: 0.00% Coil/Unstructured: 51.11%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.37
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.37
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 132 Family Scaffolds
PF00920	ILVD_EDD	12.12
PF14067	LssY_C	11.36
PF13435	Cytochrome_C554	6.82
PF04229	GrpB	5.30
PF01757	Acyl_transf_3	4.55
PF00139	Lectin_legB	1.52
PF13517	FG-GAP_3	1.52
PF13932	GIDA_C	0.76
PF04966	OprB	0.76
PF07593	UnbV_ASPIC	0.76
PF08818	DUF1801	0.76
PF08482	HrpB_C	0.76
PF12770	CHAT	0.76
PF00701	DHDPS	0.76
PF13424	TPR_12	0.76

COG ID	Name	Functional Category	% Frequency in 132 Family Scaffolds
COG0129	Dihydroxyacid dehydratase/phosphogluconate dehydratase	Carbohydrate transport and metabolism [G]	24.24
COG2320	GrpB domain, predicted nucleotidyltransferase, UPF0157 family	General function prediction only [R]	5.30
COG0329	4-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyase	Cell wall/membrane/envelope biogenesis [M]	1.52
COG1643	HrpA-like RNA helicase	Translation, ribosomal structure and biogenesis [J]	0.76
COG3659	Carbohydrate-selective porin OprB	Cell wall/membrane/envelope biogenesis [M]	0.76
COG4430	Uncharacterized conserved protein YdeI, YjbR/CyaY-like superfamily, DUF1801 family	Function unknown [S]	0.76
COG5646	Iron-binding protein Fra/YdhG, frataxin family (Fe-S cluster biosynthesis)	Posttranslational modification, protein turnover, chaperones [O]	0.76
COG5649	Uncharacterized conserved protein, DUF1801 domain	Function unknown [S]	0.76

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	65.91 %
Unclassified	root	N/A	34.09 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	65.91 %
Unclassified	root	N/A	34.09 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	65.91 %
Unclassified	root	N/A	34.09 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	50.00 %
Unclassified	root	N/A	34.09 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.03 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	37.12 %
Unclassified	root	N/A	34.09 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.76 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.76 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.76 %

Name	Rank	Taxonomy	Distribution
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	37.12 %
Unclassified	root	N/A	34.09 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.76 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.76 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.76 %

Name	Rank	Taxonomy	Distribution
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	37.12 %
Unclassified	root	N/A	34.09 %
Reyranellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae	0.76 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.76 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.09 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	2.27 %
Silvibacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium	0.76 %
Reyranella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella	0.76 %
Delftia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Delftia	0.76 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.09 %
unclassified Delftia	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Delftia → unclassified Delftia	0.76 %
Silvibacterium bohemicum	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	0.76 %
unclassified Granulicella	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella	0.76 %
unclassified Reyranella	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → unclassified Reyranella	0.76 %
Archangiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.09 %
Reyranella sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → unclassified Reyranella → Reyranella sp.	0.76 %
Granulicella sp. S190	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. S190	0.76 %
Delftia sp. 670	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Delftia → unclassified Delftia → Delftia sp. 670	0.76 %
Archangium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Archangium	0.76 %
Silvibacterium bohemicum	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	0.76 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001471\|JGI12712J15308_10096887	Not Available	748	Open in IMG/M
3300001593\|JGI12635J15846_10490000	All Organisms → cellular organisms → Bacteria	727	Open in IMG/M
3300001593\|JGI12635J15846_10696144	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300004080\|Ga0062385_10459009	All Organisms → cellular organisms → Bacteria → Acidobacteria	776	Open in IMG/M
3300004080\|Ga0062385_10545449	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	723	Open in IMG/M
3300004080\|Ga0062385_10790875	Not Available	620	Open in IMG/M
3300004082\|Ga0062384_100618528	All Organisms → cellular organisms → Bacteria → Acidobacteria	736	Open in IMG/M
3300004091\|Ga0062387_100377072	All Organisms → cellular organisms → Bacteria → Acidobacteria	947	Open in IMG/M
3300004091\|Ga0062387_100661367	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	759	Open in IMG/M
3300004092\|Ga0062389_101246873	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	929	Open in IMG/M
3300004092\|Ga0062389_101249486	Not Available	928	Open in IMG/M
3300004092\|Ga0062389_102026096	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	752	Open in IMG/M
3300004092\|Ga0062389_104572669	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300004152\|Ga0062386_100428891	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1067	Open in IMG/M
3300004635\|Ga0062388_101492576	Not Available	683	Open in IMG/M
3300004635\|Ga0062388_101975215	Not Available	603	Open in IMG/M
3300005437\|Ga0070710_10580192	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	778	Open in IMG/M
3300005537\|Ga0070730_10062809	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2642	Open in IMG/M
3300005591\|Ga0070761_10232315	All Organisms → cellular organisms → Bacteria → Acidobacteria	1099	Open in IMG/M
3300005610\|Ga0070763_10788668	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	561	Open in IMG/M
3300005921\|Ga0070766_10535871	Not Available	781	Open in IMG/M
3300005921\|Ga0070766_10758631	All Organisms → cellular organisms → Bacteria → Acidobacteria	659	Open in IMG/M
3300006176\|Ga0070765_101740647	Not Available	585	Open in IMG/M
3300006893\|Ga0073928_10187315	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1632	Open in IMG/M
3300007788\|Ga0099795_10423523	Not Available	609	Open in IMG/M
3300007819\|Ga0104322_140002	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2288	Open in IMG/M
3300009088\|Ga0099830_10992695	All Organisms → cellular organisms → Bacteria	695	Open in IMG/M
3300009633\|Ga0116129_1028340	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1882	Open in IMG/M
3300009665\|Ga0116135_1050938	Not Available	1439	Open in IMG/M
3300009665\|Ga0116135_1059913	All Organisms → cellular organisms → Bacteria	1334	Open in IMG/M
3300009665\|Ga0116135_1457798	Not Available	524	Open in IMG/M
3300009759\|Ga0116101_1083860	Not Available	725	Open in IMG/M
3300012925\|Ga0137419_10245684	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1346	Open in IMG/M
3300014489\|Ga0182018_10118033	All Organisms → cellular organisms → Bacteria	1539	Open in IMG/M
3300014495\|Ga0182015_10005911	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	12504	Open in IMG/M
3300014495\|Ga0182015_10008280	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	9938	Open in IMG/M
3300014495\|Ga0182015_10067926	All Organisms → cellular organisms → Bacteria	2539	Open in IMG/M
3300014495\|Ga0182015_10224591	Not Available	1248	Open in IMG/M
3300014495\|Ga0182015_10252477	All Organisms → cellular organisms → Bacteria	1164	Open in IMG/M
3300014499\|Ga0182012_10604364	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	705	Open in IMG/M
3300014501\|Ga0182024_10032081	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	8958	Open in IMG/M
3300014501\|Ga0182024_10085785	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4665	Open in IMG/M
3300014501\|Ga0182024_11631058	Not Available	730	Open in IMG/M
3300014501\|Ga0182024_11842596	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	675	Open in IMG/M
3300015241\|Ga0137418_10829996	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	689	Open in IMG/M
3300018025\|Ga0187885_10364944	Not Available	649	Open in IMG/M
3300018042\|Ga0187871_10458409	All Organisms → cellular organisms → Bacteria	705	Open in IMG/M
3300019786\|Ga0182025_1103923	All Organisms → cellular organisms → Bacteria → Acidobacteria	563	Open in IMG/M
3300019786\|Ga0182025_1142685	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → unclassified Reyranella → Reyranella sp.	761	Open in IMG/M
3300020199\|Ga0179592_10460210	Not Available	549	Open in IMG/M
3300020583\|Ga0210401_10308035	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1444	Open in IMG/M
3300021168\|Ga0210406_10815927	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	709	Open in IMG/M
3300021178\|Ga0210408_11089726	Not Available	615	Open in IMG/M
3300021404\|Ga0210389_10694076	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	797	Open in IMG/M
3300021405\|Ga0210387_11653016	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	544	Open in IMG/M
3300021405\|Ga0210387_11843910	Not Available	509	Open in IMG/M
3300021406\|Ga0210386_10144307	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1987	Open in IMG/M
3300021406\|Ga0210386_10725078	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	856	Open in IMG/M
3300021420\|Ga0210394_11213520	Not Available	647	Open in IMG/M
3300021433\|Ga0210391_10177455	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1677	Open in IMG/M
3300021474\|Ga0210390_10118535	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2217	Open in IMG/M
3300022557\|Ga0212123_10365349	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	981	Open in IMG/M
3300023250\|Ga0224544_1029073	All Organisms → cellular organisms → Bacteria	775	Open in IMG/M
3300024288\|Ga0179589_10341955	Not Available	679	Open in IMG/M
3300025612\|Ga0208691_1084434	Not Available	716	Open in IMG/M
3300025612\|Ga0208691_1097282	All Organisms → cellular organisms → Bacteria	663	Open in IMG/M
3300026557\|Ga0179587_10131293	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1547	Open in IMG/M
3300027517\|Ga0209113_1062570	Not Available	552	Open in IMG/M
3300027609\|Ga0209221_1136632	All Organisms → cellular organisms → Bacteria	616	Open in IMG/M
3300027676\|Ga0209333_1063449	Not Available	1015	Open in IMG/M
3300027692\|Ga0209530_1120214	Not Available	742	Open in IMG/M
3300027729\|Ga0209248_10160823	All Organisms → cellular organisms → Bacteria → Acidobacteria	668	Open in IMG/M
3300027737\|Ga0209038_10109917	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	834	Open in IMG/M
3300027767\|Ga0209655_10140766	All Organisms → cellular organisms → Bacteria → Acidobacteria	800	Open in IMG/M
3300027795\|Ga0209139_10177666	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	753	Open in IMG/M
3300027812\|Ga0209656_10190951	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	999	Open in IMG/M
3300027857\|Ga0209166_10211736	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1039	Open in IMG/M
3300027879\|Ga0209169_10169640	All Organisms → cellular organisms → Bacteria → Acidobacteria	1138	Open in IMG/M
3300027908\|Ga0209006_10722975	Not Available	813	Open in IMG/M
3300028780\|Ga0302225_10119820	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1282	Open in IMG/M
3300028780\|Ga0302225_10369488	Not Available	676	Open in IMG/M
3300028906\|Ga0308309_11349907	All Organisms → cellular organisms → Bacteria → Acidobacteria	612	Open in IMG/M
3300028906\|Ga0308309_11439948	Not Available	590	Open in IMG/M
3300029882\|Ga0311368_10439232	Not Available	952	Open in IMG/M
3300029882\|Ga0311368_11136818	Not Available	505	Open in IMG/M
3300029943\|Ga0311340_10910575	Not Available	730	Open in IMG/M
3300029943\|Ga0311340_11608017	Not Available	504	Open in IMG/M
3300029944\|Ga0311352_10611103	All Organisms → cellular organisms → Bacteria → Acidobacteria	870	Open in IMG/M
3300029944\|Ga0311352_10647227	Not Available	840	Open in IMG/M
3300029944\|Ga0311352_10795031	Not Available	740	Open in IMG/M
3300029944\|Ga0311352_11434852	Not Available	518	Open in IMG/M
3300029951\|Ga0311371_10023400	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	11353	Open in IMG/M
3300029951\|Ga0311371_10257488	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2511	Open in IMG/M
3300029951\|Ga0311371_10321849	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2163	Open in IMG/M
3300029951\|Ga0311371_10510059	All Organisms → cellular organisms → Bacteria → Acidobacteria	1583	Open in IMG/M
3300029951\|Ga0311371_11331581	All Organisms → cellular organisms → Bacteria	816	Open in IMG/M
3300029999\|Ga0311339_10495768	Not Available	1244	Open in IMG/M
3300029999\|Ga0311339_11801207	Not Available	532	Open in IMG/M
3300030007\|Ga0311338_10159018	All Organisms → cellular organisms → Bacteria	2674	Open in IMG/M
3300030007\|Ga0311338_10318159	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1709	Open in IMG/M
3300030007\|Ga0311338_11249259	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Archangium	701	Open in IMG/M
3300030399\|Ga0311353_10588716	All Organisms → cellular organisms → Bacteria → Acidobacteria	974	Open in IMG/M
3300030399\|Ga0311353_11337680	All Organisms → cellular organisms → Bacteria → Proteobacteria	586	Open in IMG/M
3300030503\|Ga0311370_10523694	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. S190	1445	Open in IMG/M
3300030503\|Ga0311370_10601250	All Organisms → cellular organisms → Bacteria	1318	Open in IMG/M
3300030503\|Ga0311370_11942851	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	591	Open in IMG/M
3300030509\|Ga0302183_10016870	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3039	Open in IMG/M
3300030520\|Ga0311372_12349766	Not Available	606	Open in IMG/M
3300030524\|Ga0311357_10200618	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1950	Open in IMG/M
3300030580\|Ga0311355_10997633	Not Available	753	Open in IMG/M
3300030580\|Ga0311355_11614824	Not Available	556	Open in IMG/M
3300030617\|Ga0311356_11171627	All Organisms → cellular organisms → Bacteria	709	Open in IMG/M
3300031027\|Ga0302308_10675993	Not Available	588	Open in IMG/M
3300031057\|Ga0170834_112176779	Not Available	537	Open in IMG/M
3300031233\|Ga0302307_10331807	All Organisms → cellular organisms → Bacteria	776	Open in IMG/M
3300031234\|Ga0302325_10505008	All Organisms → cellular organisms → Bacteria → Acidobacteria	1826	Open in IMG/M
3300031236\|Ga0302324_100281524	All Organisms → cellular organisms → Bacteria → Acidobacteria	2566	Open in IMG/M
3300031236\|Ga0302324_100365393	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Delftia → unclassified Delftia → Delftia sp. 670	2172	Open in IMG/M
3300031236\|Ga0302324_100796702	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1316	Open in IMG/M
3300031236\|Ga0302324_103242721	Not Available	534	Open in IMG/M
3300031525\|Ga0302326_10243997	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2937	Open in IMG/M
3300031708\|Ga0310686_106471039	Not Available	520	Open in IMG/M
3300031708\|Ga0310686_109481589	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	6543	Open in IMG/M
3300031708\|Ga0310686_112223267	Not Available	834	Open in IMG/M
3300031708\|Ga0310686_115058560	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	583	Open in IMG/M
3300031708\|Ga0310686_117396843	Not Available	511	Open in IMG/M
3300031823\|Ga0307478_11825101	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	500	Open in IMG/M
3300032895\|Ga0335074_11179575	All Organisms → cellular organisms → Bacteria → Acidobacteria	648	Open in IMG/M
3300034124\|Ga0370483_0011728	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2488	Open in IMG/M
3300034163\|Ga0370515_0003618	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	7647	Open in IMG/M
3300034163\|Ga0370515_0208389	All Organisms → cellular organisms → Bacteria → Acidobacteria	832	Open in IMG/M
3300034199\|Ga0370514_197999	Not Available	524	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	78.03%
Aquatic	Environmental → Aquatic	21.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	47.73%
Peat	Environmental → Terrestrial → Peat	30.30%
Freshwater	Environmental → Aquatic → Freshwater	20.45%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.52%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified	30.30%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	21.21%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	20.45%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	13.64%
Loam	Environmental → Terrestrial → Soil → Loam	12.88%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.52%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	30.30%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	15.15%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	12.12%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	11.36%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	9.85%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	9.85%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	5.30%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.79%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	1.52%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.76%

Habitat	Taxonomy	Distribution
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	29.55%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	13.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.33%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.06%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	6.06%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	5.30%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.30%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	4.55%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	4.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.79%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	3.03%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.52%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	1.52%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.52%
Permafrost Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Permafrost Soil	0.76%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.76%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.76%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.76%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.76%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.76%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.76%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001471	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300007819	Permafrost core soil microbial communities from Svalbard, Norway - sample 2-1-2 Soapdenovo	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009633	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_10	Environmental	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300009759	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_10	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014499	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2S metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300018025	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_100	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300019786	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction)	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300023250	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P1 10-14	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025612	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027517	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027609	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027676	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes)	Environmental	Open in IMG/M
3300027692	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027729	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027737	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027767	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027795	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028780	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029882	III_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300029944	II_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030509	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_2	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030524	II_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030580	II_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030617	II_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300031027	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_3	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031233	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_2	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300034124	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_06D_14	Environmental	Open in IMG/M
3300034163	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14	Environmental	Open in IMG/M
3300034199	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_01D_14	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12712J15308_100968871	3300001471	Forest Soil	MHYEAVKEINPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLFALPSNQERSAE*
JGI12635J15846_104900001	3300001593	Forest Soil	MHHEAVKQINPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLFALPSHQEDPAA*
JGI12635J15846_106961442	3300001593	Forest Soil	MHHEAVKQTNPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLYALPSGSPEDSSK*
Ga0062385_104590092	3300004080	Bog Forest Soil	VKEINPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERIHSLPSAPPASATGEIAT*
Ga0062385_105454491	3300004080	Bog Forest Soil	APFRQMHDDGVKEINPDFDALLVFLANWEAIERSALGKILTAGQLADVQELERLYALPSEPTEHLSE*
Ga0062385_107908751	3300004080	Bog Forest Soil	MHHEAVKQTNPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLYALPSGSPEPSSK*
Ga0062384_1006185282	3300004082	Bog Forest Soil	PDFDALLVFLADWEAKERSALGRIVTAGQLADVQELERLFALPSEPTEHLSE*
Ga0062387_1003770722	3300004091	Bog Forest Soil	MHHEAVKQTNPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLFTLPAGDLEDLPRA*
Ga0062387_1006613671	3300004091	Bog Forest Soil	MHYEAVKEINPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLFALSSHQEDPAA*
Ga0062389_1012468731	3300004092	Bog Forest Soil	MHDDGVKEINPDFDALLVFLANWEAIERSALGKILTAGQLADVQELERLYALPSEPTEHLSE*
Ga0062389_1012494862	3300004092	Bog Forest Soil	MHDDVVKEINPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLYALPSEPTEHLSE*
Ga0062389_1020260962	3300004092	Bog Forest Soil	MHHDVVKEINPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERMYALRSEPTEHLSE*
Ga0062389_1045726691	3300004092	Bog Forest Soil	MHDEAVKKMNPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLFALPS
Ga0062386_1004288912	3300004152	Bog Forest Soil	MHDKAVREINPDFDALLVFLANWETIERSVLGRILTAGQLADMRELERMYALPSGPSEDLSE*
Ga0062388_1014925762	3300004635	Bog Forest Soil	MHDEAVKQINPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLYALPSGSPEDSSK*
Ga0062388_1019752151	3300004635	Bog Forest Soil	MHDDVVKEINPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLYALPS
Ga0070710_105801921	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MHHDVVKETNPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLYALPSEPTEHLSE*
Ga0070730_100628093	3300005537	Surface Soil	MHDDVVKETNPDFDALLVFLANWEAIERSVLGRVLTAGQLADVQELERLYALPSEPTEHLSE*
Ga0070761_102323151	3300005591	Soil	MHDEAVKQTNPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLFALQSGEPEDFRLV*
Ga0070763_107886681	3300005610	Soil	MHHEAVKEINPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLFALPSHQEDPAA*
Ga0070766_105358712	3300005921	Soil	MHDEAVKQTNPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERMYTLPSEPTEHLSE*
Ga0070766_107586311	3300005921	Soil	GPMHDEAVKQTNPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLFALQSGEPEEPEDFRLV*
Ga0070765_1017406471	3300006176	Soil	MHDEGVKEINPDFDALLVFLSNWEAIERSALGRILTAGQLADVQELERLFALPSTPEN
Ga0073928_101873152	3300006893	Iron-Sulfur Acid Spring	MHDVAVKEINPDFDALLVFLANWEAIERSALGRILTAGQLADAQELERLYALPSEPTEHLSE*
Ga0099795_104235232	3300007788	Vadose Zone Soil	MHHDVVKETNPDFDALLVFLANWEAIERSALGRILTAGQLADVQELER
Ga0104322_1400022	3300007819	Permafrost Soil	MHHDVVKETNPDFDALLVFLADWEAIERSALGRIVTAGQLADVQELERLFALPSEPTEHLSE*
Ga0099830_109926952	3300009088	Vadose Zone Soil	MHHDVVKETNPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLYALASEPTEHLSE*
Ga0116129_10283403	3300009633	Peatland	MQDEAVKQTNPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLYALPSGNPDDSSN*
Ga0116135_10509382	3300009665	Peatland	MHDEAVKQTNPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLYALPSGSPEDSSR*
Ga0116135_10599133	3300009665	Peatland	MQDEAVKQTNPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLYALPSGDTEETSN*
Ga0116135_14577982	3300009665	Peatland	MHDEAVKELNPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLYALPSGS
Ga0116101_10838602	3300009759	Peatland	MHDEAVKQTNPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLFALQSGEPEEPEDFRLV*
Ga0137419_102456842	3300012925	Vadose Zone Soil	MHHDVVKETNPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLYTLPSEPTEHLSE*
Ga0182018_101180332	3300014489	Palsa	MHYVAVKQTNPNFDALMVFLANWEAIERSALGRIVTAGQLADVQELERLFALPSEKPKGLR*
Ga0182015_100059113	3300014495	Palsa	MHHVAVKQTNPNFDALMVFLANWEGIERAALGRIVTAGQLADVQELERLYALPSEKPRGLRC*
Ga0182015_100082801	3300014495	Palsa	VKQINPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLFALPSNQEDPAA*
Ga0182015_100679262	3300014495	Palsa	MHDDGVKEINPDFDALLVFLANWEAIERSALGKILTAGQLADVQELERLYAMPSEPTEHLSE*
Ga0182015_102245911	3300014495	Palsa	MHDEGVKEINPDFDALLVFLSNWEAIERSALGRILTAGQLADVQELERLFALPSTPQNLPE*
Ga0182015_102524773	3300014495	Palsa	MHDEAVKQTNPNFDALLVFLANWEAIERSALGRILTAGQLADVQELERLYALPSGNPNLPRECE*
Ga0182012_106043642	3300014499	Bog	MHDEAVKQTNPNFDALLVFLANWEAIERSALGRIVTAGQLADIQELERLF
Ga0182024_100320815	3300014501	Permafrost	VKEINPDFDALLVFLANWEAIERSTLGRILTAGQLADVLELERIFALPSGTPEDSR*
Ga0182024_100857853	3300014501	Permafrost	MHDDGVKEINPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLYFLPSEPTEHLSE*
Ga0182024_116310581	3300014501	Permafrost	KEINPDFDALLVFLSNWEAIERSALGRILTAGQLADVQELERLFALPSTPQNLPE*
Ga0182024_118425962	3300014501	Permafrost	NPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLFALPSNQEDPAE*
Ga0137418_108299961	3300015241	Vadose Zone Soil	MHHDVVKETNPDFDALLVFLANWEAIERSALGRILTAGQLADVQELGRLYTLPSEPTEHLSE*
Ga0187885_103649441	3300018025	Peatland	MHDEAVKEINPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLYALPSGSPEDSAK
Ga0187871_104584091	3300018042	Peatland	MHDEAVKQTNPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLYALPSESPEDLSN
Ga0182025_11039231	3300019786	Permafrost	VKEINPDFDALLVFLANWEAIERSTLGRILTAGQLADVLELERIFALPSGTPEDSR
Ga0182025_11426852	3300019786	Permafrost	MHDEGVKEINPDFDALLVFLSNWEAIERSALGRILTAGQLADVQELERLFALPS
Ga0179592_104602102	3300020199	Vadose Zone Soil	MHHDVVKETNPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLYALASEPTEHLSE
Ga0210401_103080352	3300020583	Soil	MHHEAVKETNPDLDALLVFLANWEAIERSALGRIITAGQLADVQELERLYALPSYQHDLL
Ga0210406_108159271	3300021168	Soil	MHHDVVKETNPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLYALPSEPTEHLSE
Ga0210408_110897261	3300021178	Soil	MHDDVVREINPDFDALLVFLANWEAIERSALGRILTAGQLAAVQELERLYALPSEPTEHLSE
Ga0210389_106940761	3300021404	Soil	MHDDVVREINPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLYALPSEPTEPLSE
Ga0210387_116530162	3300021405	Soil	MHDEVVEQINPDFDALLLFLANWEGKERSALGTILTAGQLADVHELERMYALPSEPTEHLSE
Ga0210387_118439101	3300021405	Soil	HHEAVKETNPDFDALLVFLANWESIERSALGRILTAGQLADVQELERLYALPSTTNGSPE
Ga0210386_101443072	3300021406	Soil	MHHEAVKEINPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLFALPSHQEDPA
Ga0210386_107250782	3300021406	Soil	MHDEAVKQINPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLYALPSGSPEDSSK
Ga0210394_112135202	3300021420	Soil	MHHEAVKQTNPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLYAL
Ga0210391_101774552	3300021433	Soil	MHYEAVKEINPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLFALPSNEENPA
Ga0210390_101185352	3300021474	Soil	MHYEAVKEINPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLFALPSHQEDPA
Ga0212123_103653492	3300022557	Iron-Sulfur Acid Spring	MHDVAVKEINPDFDALLVFLANWEAIERSALGRILTAGQLADAQELERLYALPSEPTEHLSE
Ga0224544_10290732	3300023250	Soil	VKQINPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLFALPSNQEDPAA
Ga0179589_103419551	3300024288	Vadose Zone Soil	MHHDVVKETNPDFDALLVFLANWEAIERSALGRILTAGQLADVQDLERLYALASEPTEHL
Ga0208691_10844341	3300025612	Peatland	MHDEAVKQTNPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLYALPSGSPEDSSR
Ga0208691_10972821	3300025612	Peatland	MQDEAVKQTNPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLYALPSGNPDDSSN
Ga0179587_101312932	3300026557	Vadose Zone Soil	MHHDVVKETNPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLYTLPSEPTEHLSE
Ga0209113_10625701	3300027517	Forest Soil	MHYEAVKEINPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLFALPSNQERSA
Ga0209221_11366322	3300027609	Forest Soil	MHHEAVKQTNPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLYALPSGSPEDSSK
Ga0209333_10634492	3300027676	Forest Soil	MQDEAVKQTNPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLYALPSGDTEETSN
Ga0209530_11202142	3300027692	Forest Soil	MHDEPVNEINPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLYALPSEPEGLPASDI
Ga0209248_101608232	3300027729	Bog Forest Soil	WMHDEAVKQINPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLYALPSGSPEDSSK
Ga0209038_101099171	3300027737	Bog Forest Soil	VKQINPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLYALPSGSPEDSSK
Ga0209655_101407661	3300027767	Bog Forest Soil	MHHDVVKETNPDFDALLVFLADWEAKERSALGRIVTAGQLADVQELERLFALPSEPTEHLSE
Ga0209139_101776662	3300027795	Bog Forest Soil	MHYEAVKEINPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLFALPSHHEDPA
Ga0209656_101909512	3300027812	Bog Forest Soil	MHDKAVREINPDFDALLVFLANWETIERSVLGRILTAGQLADMRELERMYALPSGPSEDLSE
Ga0209166_102117361	3300027857	Surface Soil	MHDDVVKETNPDFDALLVFLANWEAIERSVLGRVLTAGQLADVQELERLYALPSEPTEHLSE
Ga0209169_101696402	3300027879	Soil	MHDEAVKQTNPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLFALQSGEPEEPEDFRLV
Ga0209006_107229752	3300027908	Forest Soil	MQDEAVKQTNPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLYALPSGN
Ga0302225_101198201	3300028780	Palsa	HEAVKEINPDFDALLVFLANWEAIEQSALGRILTAGQLADVQELERLYALRSEPVEHLSE
Ga0302225_103694881	3300028780	Palsa	MHDEAVNEINPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLFALPSDPEPLP
Ga0308309_113499072	3300028906	Soil	MHDEAVKQTNPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLFALQSGEPEDFRLV
Ga0308309_114399482	3300028906	Soil	MHDEGVKEINPDFDALLVFLSNWEAIERSALGRILTAGQLADVQELERLFALPSTPENLP
Ga0311368_104392322	3300029882	Palsa	MHYEAVKEINPDFDALLIFLANWEAIERSALGRILTAGQLADVQELERLFALPSNQENPA
Ga0311368_111368181	3300029882	Palsa	MHHEAVKQTNPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLFALPAGDLEDLPRA
Ga0311340_109105751	3300029943	Palsa	PRSGEIDDDAVKETNPDFDALLAFLANWEAIERSVLGKILTAGQLADVLELERIFALPSGTPEDSQ
Ga0311340_116080171	3300029943	Palsa	MHYEAVKQINPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLFALPANQEDPA
Ga0311352_106111032	3300029944	Palsa	MHHEAVKQTNPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLFALPAEDIEDLPRA
Ga0311352_106472271	3300029944	Palsa	MHHEAVKELNPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLYALPSGSPEDSSK
Ga0311352_107950311	3300029944	Palsa	MHYEAVKEINPDFDALLIFLANWEAIERSALGRILTAGQLADVQELERLFALPSNQ
Ga0311352_114348521	3300029944	Palsa	MHDEAVKQTNPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLYALPSESPEDSSR
Ga0311371_100234001	3300029951	Palsa	VKQINPDFDALLVFRANWEAIERSALGRILTAGQLADVQELERLFALPSNQEDPAA
Ga0311371_102574881	3300029951	Palsa	MHHEAVKQTNPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLFALPAGDLED
Ga0311371_103218493	3300029951	Palsa	MHYEAVKEINPDFDALLIFLANWEAIERSALGRILTAGQLADVQELERLFALPSNQDNPA
Ga0311371_105100591	3300029951	Palsa	MHHEAVKELNPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLYALPSGSPEDPTKTI
Ga0311371_113315811	3300029951	Palsa	SAGSGWMHDEAVKQTNPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLYALPSESPEDSSR
Ga0311339_104957682	3300029999	Palsa	MHDEAVKEINPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERL
Ga0311339_118012071	3300029999	Palsa	PDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLFALPSNQEDPAV
Ga0311338_101590182	3300030007	Palsa	MHHEAVKQTNPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLFALPAGDLEDLPPVPQG
Ga0311338_103181592	3300030007	Palsa	MHHEAVKELNPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLYALPSGSPEDSSKTV
Ga0311338_112492591	3300030007	Palsa	MHDEAVKQINPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLYAL
Ga0311353_105887162	3300030399	Palsa	MHDVAVKQTNPNFDALMVFLANWEAIERSALGRIVTAGQLADVQELERLFALPSQKPKRLRA
Ga0311353_113376801	3300030399	Palsa	MHHEAVKQTNPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLF
Ga0311370_105236941	3300030503	Palsa	MHDDVVKEINPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLSALPSEPTEHLSE
Ga0311370_106012502	3300030503	Palsa	MHHEAVMKQTNPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLFALPAEEPEDFLRA
Ga0311370_119428511	3300030503	Palsa	DALLVFLANWEAIERSALGRILTAGQLADVQELERLFALPSHQEDPAA
Ga0302183_100168701	3300030509	Palsa	VKQINPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLFALPS
Ga0311372_123497661	3300030520	Palsa	MHDEGVKQINPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLFALPTAMPDGSRAS
Ga0311357_102006182	3300030524	Palsa	MHDDVVKEINPDFDALLVFLANWEAIERYALGRILTAGQLADVQELERLSALPSEPTEHLSE
Ga0311355_109976331	3300030580	Palsa	THTQMHHEAVNQTNPDFDALLVFLANWESIERSALGKILTAGQLADVQELERLYSLPSTSNGSPE
Ga0311355_116148241	3300030580	Palsa	VKEINPDFDALLIFLANWEAIERSALGRILTAGQLADVQELERLFALPSNQENPAE
Ga0311356_111716272	3300030617	Palsa	MHHEAVKQTNPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLYALPSGSSEDSSK
Ga0302308_106759932	3300031027	Palsa	HEAVNQTNPDFDALLVFLANWESIERSALGKILTAGQLADVQELERLYSLPSTSNGSPE
Ga0170834_1121767791	3300031057	Forest Soil	MHDEVVEQINPDFDALLLFLANWEATEQSALGKILTAGQLADVLELERLYALRSEPTEHLSE
Ga0302307_103318071	3300031233	Palsa	DEAVKQTNPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLYALPSGDTEETSN
Ga0302325_105050081	3300031234	Palsa	MHDEAVKRTNPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLYSLPSTSNGSP
Ga0302324_1002815244	3300031236	Palsa	VKQTNPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLYALPSESPEDLSN
Ga0302324_1003653931	3300031236	Palsa	MHHEAVKQTNPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLFALP
Ga0302324_1007967022	3300031236	Palsa	MHHEAVKQINPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLFALPSHQEDPA
Ga0302324_1032427211	3300031236	Palsa	MHYEAVKEINPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLFALPSDQEDPA
Ga0302326_102439971	3300031525	Palsa	MSLGFGAMHDVAVKQTNPNFDALIAFLANWEAIERSALGRIVTAGQL
Ga0310686_1064710392	3300031708	Soil	MHHEAVKETNPNFDALLVFLSNWEAIERSALGRIVTAGQLADVQELERLFALPSDGAVGRRTTKV
Ga0310686_1094815896	3300031708	Soil	MHDEGVKEINPDFDALLVFLSNWEAIERSALGRILTAGQLADVQELERLFALPSTPENLPKK
Ga0310686_1122232671	3300031708	Soil	MHDEAVKQTNPNFDALLIFLANWEAIERSALGRILTAGQLADVQELERLYALP
Ga0310686_1150585601	3300031708	Soil	AVRGEMHYEVVKEINPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLFALPATQENPKA
Ga0310686_1173968432	3300031708	Soil	PMHDDAVNEINPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLFALPAGEDAQPL
Ga0307478_118251011	3300031823	Hardwood Forest Soil	HDVVKEINPDFDALLVFLANWEAIERSALGRILTAGQLADVQELERLYALPSEPTEHLSE
Ga0335074_111795752	3300032895	Soil	MKETNPNFDALLVFLANWEAIERSALGRILSAGQLADVQELERMYALPSGPSEGLPQ
Ga0370483_0011728_1276_1461	3300034124	Untreated Peat Soil	MHDEAVKNINPDYDALLVFLANWEAIERSALGRIFSAGQLADVQELERLYSLPAHAEDYP
Ga0370515_0003618_2395_2583	3300034163	Untreated Peat Soil	MHDDGVKEINPDFDALLVFLANWEAIERSALGKILTAGQLADVQELERMYALRSEPTEHLSE
Ga0370515_0208389_367_537	3300034163	Untreated Peat Soil	VKEINPDFDALLVFLANWEAIERSALGRILTAGQLADVLELERIFALPSGTPEDSL
Ga0370514_197999_348_524	3300034199	Untreated Peat Soil	MHDDGVKEINPDFDALLVFLANWEAIERSALGKILTAGQLADVQELERMYALRSEPTEH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F061063

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences