Metagenome / Metatranscriptome Family F061055

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F061055
Family Type	Metagenome / Metatranscriptome
Number of Sequences	132
Average Sequence Length	79 residues
Representative Sequence	MKNSRQPVAVEAREERAASLLDRNTRPLENVEDLLMRTRVDLAELKRTGAREGLPELLADVTELKSEIEQLEAPPGER
Number of Associated Samples	98
Number of Associated Scaffolds	132

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	78.03 %
% of genes near scaffold ends (potentially truncated)	45.45 %
% of genes from short scaffolds (< 2000 bps)	86.36 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.54

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (53.788 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere (11.364 % of family members)
Environment Ontology (ENVO)	Unclassified (62.121 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (90.909 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 56.60% β-sheet: 0.00% Coil/Unstructured: 43.40%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.54
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.54
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 132 Family Scaffolds
PF04448	DUF551	17.42
PF13621	Cupin_8	6.82
PF03129	HGTP_anticodon	1.52
PF00816	Histone_HNS	1.52
PF13670	PepSY_2	0.76
PF13505	OMP_b-brl	0.76
PF07690	MFS_1	0.76
PF12286	DUF3622	0.76
PF07886	BA14K	0.76
PF12832	MFS_1_like	0.76
PF00149	Metallophos	0.76
PF00702	Hydrolase	0.76
PF03050	DDE_Tnp_IS66	0.76

COG ID	Name	Functional Category	% Frequency in 132 Family Scaffolds
COG0124	Histidyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	1.52
COG0423	Glycyl-tRNA synthetase, class II	Translation, ribosomal structure and biogenesis [J]	1.52
COG0441	Threonyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	1.52
COG0442	Prolyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	1.52
COG2916	DNA-binding protein H-NS	Transcription [K]	1.52
COG3436	Transposase	Mobilome: prophages, transposons [X]	0.76

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.79 %
All Organisms	root	All Organisms	46.21 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.79 %
cellular organisms	root	All Organisms → cellular organisms	46.21 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.79 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	46.21 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.79 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	33.33 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.52 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.76 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.79 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	31.06 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1.52 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.52 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.76 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.79 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	29.55 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1.52 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.52 %
Ignavibacteriae	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae	0.76 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.79 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	24.24 %
Thermoanaerobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Thermoanaerobacterales	1.52 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1.52 %
Ignavibacteria	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria	0.76 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.76 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.79 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	21.97 %
Thermoanaerobacterales Family III. Incertae Sedis	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Thermoanaerobacterales → Thermoanaerobacterales Family III. Incertae Sedis	1.52 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1.52 %
Rhodopseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	0.76 %
Ignavibacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → Ignavibacteriales	0.76 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.76 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.79 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	1.52 %
Bradyrhizobium valentinum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	1.52 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1.52 %
Syntrophaceticus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Thermoanaerobacterales → Thermoanaerobacterales Family III. Incertae Sedis → Syntrophaceticus	1.52 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1.52 %
Rhodopseudomonas palustris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	0.76 %
Melioribacteraceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → Ignavibacteriales → Melioribacteraceae	0.76 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.76 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.79 %
Syntrophaceticus schinkii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Thermoanaerobacterales → Thermoanaerobacterales Family III. Incertae Sedis → Syntrophaceticus → Syntrophaceticus schinkii	1.52 %
Bradyrhizobium valentinum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	1.52 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1.52 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1.52 %
Bradyrhizobium sp. sBnM-33	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. sBnM-33	0.76 %
Bradyrhizobium sp. 200	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 200	0.76 %
Melioribacter	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → Ignavibacteriales → Melioribacteraceae → Melioribacter	0.76 %
Rhodopseudomonas palustris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	0.76 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.76 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.79 %
Syntrophaceticus schinkii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Thermoanaerobacterales → Thermoanaerobacterales Family III. Incertae Sedis → Syntrophaceticus → Syntrophaceticus schinkii	1.52 %
Bradyrhizobium valentinum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	1.52 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1.52 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1.52 %
Melioribacter roseus	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → Ignavibacteriales → Melioribacteraceae → Melioribacter → Melioribacter roseus	0.76 %
Bradyrhizobium sp. sBnM-33	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. sBnM-33	0.76 %
Bradyrhizobium sp. 200	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 200	0.76 %
Rhodopseudomonas palustris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	0.76 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.76 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.76 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_108563704	Not Available	944	Open in IMG/M
3300005093\|Ga0062594_100028345	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2517	Open in IMG/M
3300005290\|Ga0065712_10371577	Not Available	760	Open in IMG/M
3300005290\|Ga0065712_10485881	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	659	Open in IMG/M
3300005327\|Ga0070658_10733492	Not Available	858	Open in IMG/M
3300005334\|Ga0068869_100019441	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4641	Open in IMG/M
3300005334\|Ga0068869_100474252	Not Available	1041	Open in IMG/M
3300005334\|Ga0068869_100515528	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1000	Open in IMG/M
3300005334\|Ga0068869_100622869	Not Available	913	Open in IMG/M
3300005337\|Ga0070682_100998096	All Organisms → cellular organisms → Bacteria	695	Open in IMG/M
3300005338\|Ga0068868_100036744	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3794	Open in IMG/M
3300005338\|Ga0068868_101471724	Not Available	637	Open in IMG/M
3300005347\|Ga0070668_100160163	Not Available	1826	Open in IMG/M
3300005347\|Ga0070668_100800047	Not Available	837	Open in IMG/M
3300005355\|Ga0070671_100086728	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2619	Open in IMG/M
3300005356\|Ga0070674_101142337	Not Available	689	Open in IMG/M
3300005366\|Ga0070659_100101688	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2314	Open in IMG/M
3300005438\|Ga0070701_11034385	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300005454\|Ga0066687_10919539	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → Ignavibacteriales → Melioribacteraceae → Melioribacter → Melioribacter roseus	521	Open in IMG/M
3300005455\|Ga0070663_100023900	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4102	Open in IMG/M
3300005455\|Ga0070663_100542293	Not Available	971	Open in IMG/M
3300005455\|Ga0070663_101236418	Not Available	657	Open in IMG/M
3300005457\|Ga0070662_100468637	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Thermoanaerobacterales → Thermoanaerobacterales Family III. Incertae Sedis → Syntrophaceticus → Syntrophaceticus schinkii	1047	Open in IMG/M
3300005457\|Ga0070662_101059931	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	695	Open in IMG/M
3300005466\|Ga0070685_10702177	Not Available	738	Open in IMG/M
3300005536\|Ga0070697_102003844	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	518	Open in IMG/M
3300005549\|Ga0070704_100152032	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	1821	Open in IMG/M
3300005549\|Ga0070704_101646012	Not Available	592	Open in IMG/M
3300005840\|Ga0068870_10078335	All Organisms → cellular organisms → Bacteria → Proteobacteria	1820	Open in IMG/M
3300005841\|Ga0068863_101798423	Not Available	622	Open in IMG/M
3300005843\|Ga0068860_101114966	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	809	Open in IMG/M
3300005844\|Ga0068862_100011563	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	7282	Open in IMG/M
3300006042\|Ga0075368_10033240	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2006	Open in IMG/M
3300006042\|Ga0075368_10118818	Not Available	1093	Open in IMG/M
3300006048\|Ga0075363_100959117	Not Available	526	Open in IMG/M
3300006051\|Ga0075364_10565600	Not Available	777	Open in IMG/M
3300006177\|Ga0075362_10167924	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 200	1059	Open in IMG/M
3300006177\|Ga0075362_10322811	Not Available	769	Open in IMG/M
3300006178\|Ga0075367_10156659	Not Available	1415	Open in IMG/M
3300006178\|Ga0075367_10227706	Not Available	1167	Open in IMG/M
3300006186\|Ga0075369_10057055	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1698	Open in IMG/M
3300006186\|Ga0075369_10175031	Not Available	986	Open in IMG/M
3300006186\|Ga0075369_10555151	Not Available	548	Open in IMG/M
3300006353\|Ga0075370_10156852	Not Available	1334	Open in IMG/M
3300006353\|Ga0075370_10295487	Not Available	963	Open in IMG/M
3300006353\|Ga0075370_10683819	Not Available	623	Open in IMG/M
3300006353\|Ga0075370_10945144	Not Available	527	Open in IMG/M
3300006797\|Ga0066659_10159064	All Organisms → cellular organisms → Bacteria	1614	Open in IMG/M
3300006800\|Ga0066660_10900311	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	720	Open in IMG/M
3300006881\|Ga0068865_101288705	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	649	Open in IMG/M
3300006904\|Ga0075424_101233968	Not Available	796	Open in IMG/M
3300006914\|Ga0075436_100692332	Not Available	755	Open in IMG/M
3300006954\|Ga0079219_10936579	Not Available	707	Open in IMG/M
3300009012\|Ga0066710_102131078	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	822	Open in IMG/M
3300009094\|Ga0111539_10431465	Not Available	1534	Open in IMG/M
3300009098\|Ga0105245_10725121	Not Available	1029	Open in IMG/M
3300009148\|Ga0105243_10475003	Not Available	1179	Open in IMG/M
3300009156\|Ga0111538_13254568	Not Available	565	Open in IMG/M
3300009176\|Ga0105242_11524543	All Organisms → cellular organisms → Bacteria	700	Open in IMG/M
3300009177\|Ga0105248_10245950	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2013	Open in IMG/M
3300009177\|Ga0105248_10416203	All Organisms → cellular organisms → Bacteria	1513	Open in IMG/M
3300009545\|Ga0105237_11586943	Not Available	661	Open in IMG/M
3300009551\|Ga0105238_10339079	Not Available	1491	Open in IMG/M
3300010371\|Ga0134125_12480302	Not Available	564	Open in IMG/M
3300010373\|Ga0134128_11247157	Not Available	820	Open in IMG/M
3300010375\|Ga0105239_10009310	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	11100	Open in IMG/M
3300010375\|Ga0105239_10570972	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Thermoanaerobacterales → Thermoanaerobacterales Family III. Incertae Sedis → Syntrophaceticus → Syntrophaceticus schinkii	1289	Open in IMG/M
3300010375\|Ga0105239_12237724	Not Available	636	Open in IMG/M
3300010397\|Ga0134124_11578363	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	686	Open in IMG/M
3300010400\|Ga0134122_10179663	Not Available	1741	Open in IMG/M
3300012205\|Ga0137362_11270056	Not Available	621	Open in IMG/M
3300012212\|Ga0150985_111249953	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1325	Open in IMG/M
3300012212\|Ga0150985_112924837	Not Available	508	Open in IMG/M
3300012212\|Ga0150985_117810323	Not Available	691	Open in IMG/M
3300012362\|Ga0137361_10184014	All Organisms → cellular organisms → Bacteria	1884	Open in IMG/M
3300012362\|Ga0137361_11218102	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	676	Open in IMG/M
3300012469\|Ga0150984_100475896	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	832	Open in IMG/M
3300012469\|Ga0150984_103069562	Not Available	671	Open in IMG/M
3300012469\|Ga0150984_120039397	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	649	Open in IMG/M
3300012685\|Ga0137397_10353049	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. sBnM-33	1096	Open in IMG/M
3300012944\|Ga0137410_10734901	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	824	Open in IMG/M
3300013105\|Ga0157369_12027907	Not Available	584	Open in IMG/M
3300013296\|Ga0157374_12192784	Not Available	579	Open in IMG/M
3300013306\|Ga0163162_10132586	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2601	Open in IMG/M
3300014968\|Ga0157379_12563040	Not Available	510	Open in IMG/M
3300014969\|Ga0157376_10050676	All Organisms → cellular organisms → Bacteria	3445	Open in IMG/M
3300014969\|Ga0157376_10956877	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	877	Open in IMG/M
3300015371\|Ga0132258_12250138	All Organisms → cellular organisms → Bacteria	1368	Open in IMG/M
3300015372\|Ga0132256_101423707	Not Available	805	Open in IMG/M
3300017792\|Ga0163161_11740286	Not Available	553	Open in IMG/M
3300018081\|Ga0184625_10018705	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3286	Open in IMG/M
3300019789\|Ga0137408_1178275	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4096	Open in IMG/M
3300020080\|Ga0206350_11113459	Not Available	784	Open in IMG/M
3300025315\|Ga0207697_10029226	All Organisms → cellular organisms → Bacteria	2255	Open in IMG/M
3300025899\|Ga0207642_10106196	All Organisms → cellular organisms → Bacteria	1420	Open in IMG/M
3300025900\|Ga0207710_10365216	All Organisms → cellular organisms → Bacteria	737	Open in IMG/M
3300025901\|Ga0207688_10328608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	939	Open in IMG/M
3300025901\|Ga0207688_10497485	Not Available	763	Open in IMG/M
3300025903\|Ga0207680_10382147	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	993	Open in IMG/M
3300025907\|Ga0207645_10122682	All Organisms → cellular organisms → Bacteria	1687	Open in IMG/M
3300025908\|Ga0207643_10071349	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1999	Open in IMG/M
3300025908\|Ga0207643_10552352	All Organisms → cellular organisms → Bacteria	739	Open in IMG/M
3300025913\|Ga0207695_10773555	Not Available	840	Open in IMG/M
3300025914\|Ga0207671_10667970	Not Available	827	Open in IMG/M
3300025918\|Ga0207662_10159710	Not Available	1439	Open in IMG/M
3300025919\|Ga0207657_10348810	Not Available	1167	Open in IMG/M
3300025923\|Ga0207681_10283513	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1305	Open in IMG/M
3300025923\|Ga0207681_10427864	Not Available	1074	Open in IMG/M
3300025924\|Ga0207694_10231892	Not Available	1508	Open in IMG/M
3300025927\|Ga0207687_11860861	Not Available	515	Open in IMG/M
3300025931\|Ga0207644_10517675	Not Available	985	Open in IMG/M
3300025932\|Ga0207690_10457670	Not Available	1026	Open in IMG/M
3300025933\|Ga0207706_10154741	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2017	Open in IMG/M
3300025933\|Ga0207706_11089002	Not Available	668	Open in IMG/M
3300025934\|Ga0207686_10348498	Not Available	1114	Open in IMG/M
3300025934\|Ga0207686_10385391	Not Available	1064	Open in IMG/M
3300025937\|Ga0207669_11033602	Not Available	691	Open in IMG/M
3300025942\|Ga0207689_10412596	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1126	Open in IMG/M
3300025945\|Ga0207679_10242490	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1528	Open in IMG/M
3300025972\|Ga0207668_10528823	Not Available	1018	Open in IMG/M
3300025981\|Ga0207640_10166921	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1635	Open in IMG/M
3300025981\|Ga0207640_11324914	Not Available	643	Open in IMG/M
3300026023\|Ga0207677_11376058	Not Available	650	Open in IMG/M
3300026067\|Ga0207678_10290108	Not Available	1405	Open in IMG/M
3300026078\|Ga0207702_10572147	Not Available	1107	Open in IMG/M
3300026088\|Ga0207641_10692743	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1003	Open in IMG/M
3300026089\|Ga0207648_10602361	Not Available	1013	Open in IMG/M
3300026118\|Ga0207675_100615193	Not Available	1090	Open in IMG/M
3300026118\|Ga0207675_100658642	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	1054	Open in IMG/M
3300028379\|Ga0268266_10021215	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5533	Open in IMG/M
3300028380\|Ga0268265_10103737	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	2303	Open in IMG/M
3300028381\|Ga0268264_11467284	Not Available	693	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	80.30%
Environmental	Environmental	19.70%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	80.30%
Terrestrial	Environmental → Terrestrial	18.94%
Aquatic	Environmental → Aquatic	0.76%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	41.67%
Rhizoplane	Host-Associated → Plants → Rhizoplane	27.27%
Soil	Environmental → Terrestrial → Soil	18.94%
Roots	Host-Associated → Plants → Roots	11.36%
Sediment	Environmental → Aquatic → Sediment	0.76%

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	22.73%
Soil	Host-Associated → Plants → Rhizosphere → Soil	21.97%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	19.70%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	13.64%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	11.36%
Loam	Environmental → Terrestrial → Soil → Loam	5.30%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.55%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.76%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	22.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	21.97%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	19.70%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	11.36%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	8.33%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.30%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.55%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.79%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.52%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.76%

Habitat	Taxonomy	Distribution
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	11.36%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	10.61%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	9.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	6.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	6.06%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	6.06%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.55%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	4.55%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.03%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.03%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.03%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.03%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	2.27%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.27%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	2.27%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.27%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.27%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.27%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	2.27%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.52%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	1.52%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.52%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.76%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.76%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.76%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.76%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.76%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.76%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.76%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.76%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.76%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006042	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3	Host-Associated	Open in IMG/M
3300006048	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3	Host-Associated	Open in IMG/M
3300006051	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4	Host-Associated	Open in IMG/M
3300006177	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2	Host-Associated	Open in IMG/M
3300006178	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2	Host-Associated	Open in IMG/M
3300006186	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4	Host-Associated	Open in IMG/M
3300006353	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5	Host-Associated	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300020080	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1085637041	3300000956	Soil	MKNSPQPIPAEARKERVTGLLNDGARALEDLEDLLMRVRVDLVELKRTGTRDGVSELVADTKKLTREIERLAEPL*
Ga0062594_1000283453	3300005093	Soil	AMKNSRQPVAVEAREERAASLLDRNTRPLENVEDLLMRTRVDLAELKRTGAREGLPELLADVTELKSEIEQLEAPPEVAGRLN*
Ga0065712_103715772	3300005290	Miscanthus Rhizosphere	DAMSNSRRRVAAVAAEKGPAGLLDRSARPLESVEDLLMRARVDLAELKRTGAREGLPELLDDVTELKREIEQIGEHSQSRRQ*
Ga0065712_104858812	3300005290	Miscanthus Rhizosphere	MKNSRQPVAAEAWEERAASLLDRNTRPLENVEDLLMRTRVDLAELKRTGAREGLPELLADVTELKSEIEQLEAPPGERRGNP*
Ga0070658_107334922	3300005327	Corn Rhizosphere	MSNSRRRVAAVAAEKGPAGLLDRSARPLESVEDLLMRARVDLAELKRTGAREGLPELLDDVTELKREIEQIGEHSQSRRQ*
Ga0068869_1000194415	3300005334	Miscanthus Rhizosphere	MKNSRQPVAVEAREERAASLLDRNTRPLENVEDLLMRTRVDLAELKRTGAREGLPELLADVTELKSEIEQLEAPPGERRGNP*
Ga0068869_1004742522	3300005334	Miscanthus Rhizosphere	MNIARYNSRQRVAVIAAEEGPADLLDNSARSLESVEDLLMRARVDLAELKRTGAREGLPELLDDVTELKRELEKLERPPSPRP*
Ga0068869_1005155282	3300005334	Miscanthus Rhizosphere	MNNFRQPISVHARKARAVRLLNGGARSLENIEDLLMRARVDLVELKRTGLREGLSELVADVTRLKGEIERLEEPREVMDS*
Ga0068869_1006228691	3300005334	Miscanthus Rhizosphere	MKNSRQPVAVEVREEPAASLLDRNARPLENVEDLLMRTRVDLAELKRTGAREGLPELLADVTELKSEIEQLEAPPEVAGRLN*
Ga0070682_1009980962	3300005337	Corn Rhizosphere	MKNSRQPVAVEVREEPAASLLDRNARPLENVEDLLMRTRVDLAELKRTGAREGLPELLADVTELKSEIEQLEAPPGVAGRLN*
Ga0068868_1000367441	3300005338	Miscanthus Rhizosphere	EERAASLLDRNTRPLENVEDLLMRTRVDLAELKRTGAREGLPELLADVTELKSEIEQLEAPPGERRGNP*
Ga0068868_1014717242	3300005338	Miscanthus Rhizosphere	MKNSRQPVAVEAGKERASSSLGSNARSLENVEDLLRRTRVDVAELKRTGAREGFSELVADVTKLKSEVEQLEE
Ga0070668_1001601634	3300005347	Switchgrass Rhizosphere	MKNSRQPVAVEAGKERASSSLGSNARSLENVEDLLRRTRVDVAELKRTGAREGFSELVADVTKLKSEVEQLEEPLRVAGRKT*
Ga0070668_1008000473	3300005347	Switchgrass Rhizosphere	MNDSRQPIAVDARKIRAVNLLNSGARSLENVEDLLMRARVDLVELKRTGSRERLSELVADVINLKSEIERLECPLVTGTEPPPAL*
Ga0070671_1000867283	3300005355	Switchgrass Rhizosphere	MKNSRQPVAAEVREEPAASLLDRNTRPLENVEDLLMRTRVDLAELKRTGAREGLPELLADVTELKSEIEQLEAPPGVAGRLN*
Ga0070674_1011423372	3300005356	Miscanthus Rhizosphere	MSNSRRRVAAVAAEKGPAGLLDRSARPLESVEDLLMRARVDLAELKRTGAREGLPELLDDVTELKREIEQIGEHS
Ga0070659_1001016886	3300005366	Corn Rhizosphere	MSNSRRRVAAVAAEKGPAGLLDRSARPLESVEDLLMRARVDLAELKRTGAREGLPELLDDVTELK
Ga0070701_110343852	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MKNSRQPVAVEAREERAASLLDRNTRPLENVEDLLMRTRVDLAELKRTGAREGLPELLADVTELKSEIEQL
Ga0066687_109195391	3300005454	Soil	MNNSRQPIAVEVRKERAMSLLNRGARPLENVEDLLMRARVDLVELKRTGFREGLPELVADATKLKSEVERLEEP
Ga0070663_1000239007	3300005455	Corn Rhizosphere	MKNSRQPVAVEAREERAASLLDRNTRPLENVEDLLMRTRVDLAELKRTGAREGLPELLADVTELKSEIEQLEAPPEVAGRLN*
Ga0070663_1005422931	3300005455	Corn Rhizosphere	ISVHARKARAVRLLNGGARSLENIEDLLMRARVDLVELKRTGLREGLSELVADVTRLKGEIERLEEPREVMDS*
Ga0070663_1012364183	3300005455	Corn Rhizosphere	MNIARYNSRQRVAVIAAEEGPADLLDNSARSLESVEDLLMRARVDLAELKRTGAREGLPELLDDVTELKREL
Ga0070662_1004686371	3300005457	Corn Rhizosphere	MNDPRQPIAVEARKIRAVNLLNSGARSLENVEDLLMRARVDLVELKRTGSRERLSELVADVINLKSEIERLECPLVTGTEPPPAL*
Ga0070662_1010599312	3300005457	Corn Rhizosphere	PVAVEAGKERASSSLGSNARSLENVEDLLRRTRVDVAELKRTGAREGFSELVADVTKLKSEVEQLEEPLRVAGRKT*
Ga0070685_107021772	3300005466	Switchgrass Rhizosphere	EERAASLLDRNTRPLENVEDLLMRTRVDLAELKRTGAREGLPELLADVTELKSEIEQLEAPPEVAGRLN*
Ga0070697_1020038441	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	LMKNSRQPIAVGARKERAVRLLNSGARHLENVEDLLMRARVDLVELKRTGFREGLPELVADVARLESEIERLEETQEEAST*
Ga0070704_1001520322	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MKNSRQPVAAEAWEERAASLLDRNTRPLENVEDLLMRTRVDLAELKRTGAREGLPELLADVTELKSEIEQLEAPPEVAGRLN*
Ga0070704_1016460121	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MNDSRQPIAVEARKIRAVNLLNSGARSLENVEDLLMRARVDLVELKRTGSRERLSELVADVINLKSEIERLECPLVTGTEPPPAL*
Ga0068870_100783355	3300005840	Miscanthus Rhizosphere	MSNSRRRVAAVAAEKGPAGLLDRSARPLESVEDLLMRARVDLAELKRTGAREGLPELLDDVTELKRE
Ga0068863_1017984232	3300005841	Switchgrass Rhizosphere	MKNSRQPVAAEVREEPAASLLDRNTRPLENVEDLLMRTRVDLAELKRTGAREGLPELLADVTELKSEIEQLEAPP
Ga0068860_1011149661	3300005843	Switchgrass Rhizosphere	AMKNSRQPVAVEAREERAASLLDRNTRPLENVEDLLMRTRVDLAELKRTGAREGLPELLADVTELKSEIEQLEAPPGERRGNP*
Ga0068862_10001156313	3300005844	Switchgrass Rhizosphere	MKNSRQPVAVEAGKERASSSLGSNARSLENVEDLLRRTRVDVAELKRTGTREGFSELVADVTKLKSEVEQLEEPLRVAGRKT*
Ga0075368_100332401	3300006042	Populus Endosphere	MKNSRQPVAVEVREEPAPSLLDRNARPLENVEDLLMRTRVDLAELKRTGAREGLPELLADVTELKSEIEQLEAPPGVAGRLN*
Ga0075368_101188183	3300006042	Populus Endosphere	MKNSRQPVAAEAWEERAASLLDRNTRPLENVEDLLMRTRVDLAELKRTGAREGLPELLADVTELKSEIEQLEAPPG
Ga0075363_1009591171	3300006048	Populus Endosphere	MKNSRQPVAVEVREEPAASLLDRNARPLENVEDLLMRTRVDLAELKRTGAREGLPELLADVTELKSEIEQLEAP
Ga0075364_105656001	3300006051	Populus Endosphere	MNIARYNSRQRVAVIAAEEGPADLLDNSARSLESVEDLLMRARVDLAELKRTGAREGLPELLDDVTELKRE
Ga0075362_101679242	3300006177	Populus Endosphere	MNDSRQPIAVEARKIRAVNLLNSGARSLENVEDLLMRARVDLVELKRTGSRERLSELVADVINLKSEIERLE
Ga0075362_103228111	3300006177	Populus Endosphere	MSNSRRRVAAVAAEKGPAGLLDRSARPLESVEDLLMRARVDLAELKRTGAREGLPELLDDVTELKREIEKLERPPSPRPRGYRLG*
Ga0075367_101566591	3300006178	Populus Endosphere	AVEAREERAASLLDRNTRPLENVEDLLMRTRVDLAELKRTGAREGLPELLADVTELKSEIEQLEAPPGERRGNP*
Ga0075367_102277061	3300006178	Populus Endosphere	MKNSRQPVVAVEVREEPAASLLDRNARPLENVEDLLMRTRVDLAELKRTGAREGLPELLADVTELKSEIEQLEAPPGVAGRLN*
Ga0075369_100570551	3300006186	Populus Endosphere	MNIARYNSRQRVAVIAAEEGPADLLDNSARSLESVEDLLMRARVDLAELKRTGAREGLPELLDDVTELKREIEKLERPPSPRPRGYRLG*
Ga0075369_101750312	3300006186	Populus Endosphere	MKNSRQPVAVEVREEPAPSLLDRNARPLENVEDLLMRTRVDLAELKRTGAREGLPELLADVTELKSEIEQLEAPPEVAGRLN*
Ga0075369_105551511	3300006186	Populus Endosphere	MKNSRQPVAVEAGKERASSSLGSNARSLENVEDLLRRTRVDVAELKRTGAREGFSELVADVTKLKSEVEQLEEPLRVAGRKA
Ga0075370_101568522	3300006353	Populus Endosphere	MRSISWNDSRRRVAAAAAEKGPADLLDRSARPLEDVEDLLMRARVDLAELKRTGAREGLPELLDDVTELKREIEQIEEHSQSRRQ*
Ga0075370_102954871	3300006353	Populus Endosphere	MKNTRQPIAVKARKDQAASLLNSGARQLENVEDLLMRARVDLAEVKRTGAREGLPELLADVTKLKSEVEQLEERPEAAGARSKAVSFGAY*
Ga0075370_106838191	3300006353	Populus Endosphere	MKNSRQPVAVEAREEPAASLLDRNTRPLENVEDLLMRTRVDLAELKRTGAREGLPELLADVTELKSEIEQLEAPPEVAGRLN*
Ga0075370_109451441	3300006353	Populus Endosphere	MKNSRQPVAVEAREERAASLLDRNTRPLENVEDLLMRTRVDLAELKRTGAREGLPELLADVTELKSEIEQLEAP
Ga0066659_101590643	3300006797	Soil	MNNSRQPIAVEVRKERAMSLLNRGARPLENVEDLLMRARVDLVELKRTGFREGLPELVADATKLKSEVERLEEPSGSK*
Ga0066660_109003112	3300006800	Soil	MKNSRQPIAVEARKERAVRLLNNDARPLESVEDLLMRARVDLVELKRTETREVLPELVADVTKLKSEVELLEKPK
Ga0068865_1012887051	3300006881	Miscanthus Rhizosphere	MNNFRQPISVNARKARAVRLLNGGARSLENIEDLLMRARVDLVELKRTGLREGLSELVADVTRLKGEIERLEEPREVMDS*
Ga0075424_1012339682	3300006904	Populus Rhizosphere	MKNSRQPVAVEVREEPAASLLDRNARPLENVEDLLMRTRVDLAELKRTGAREGLPELLADVTELKSEIEQLEAPPGERRGNP
Ga0075436_1006923322	3300006914	Populus Rhizosphere	MKNSRQPVAVEAREERAASLLDRNTRPLENVEDLLMRTRVDLAELKRTGAREGLPELLADVTELKSEIEQLEAPPGVAGRLN*
Ga0079219_109365792	3300006954	Agricultural Soil	MKNSRQPVAVEAREEPAASVLDRNARPLENVEGLLMRTRVDLAELKRTGAREGLPELLADVTELKSEIEQLEAPPGVAGRLN*
Ga0066710_1021310782	3300009012	Grasslands Soil	RQPIAVEVRKERAMSLLNRGARPLENVEDLLMRARVDLVELKRTGFREGLPELVADATKLKSEVERLEEPSGSK
Ga0111539_104314652	3300009094	Populus Rhizosphere	MKNSRQPAAVEAREERAASLLDRNTRPLENVEDLLMRTRVDLAELKRTGAREGLPELLADVTELKSEIEQLEAPPGERRGNP*
Ga0105245_107251211	3300009098	Miscanthus Rhizosphere	MNDSREPIAVEARKIRAVNLLNSGARSLENVEDLLMRARVDLVELKRTGSRERLSELVADVINLKSEIERLECPLVTGTEPPPAL*
Ga0105243_104750033	3300009148	Miscanthus Rhizosphere	MKNSRQPVAAEAWEERAASLLDRNTRPLENGEDLLMRTRVDLAELKRTGGREGLPELLADVTELKSEIEQLEAPPGVAGRLN*
Ga0111538_132545681	3300009156	Populus Rhizosphere	KNSRQPVAVEVREEPAASLLDRNARPLENVEDLLMRTRVDLAELKRTGAREGLPELLADVTELKSEIEQLEAPPGVAGRLN*
Ga0105242_115245432	3300009176	Miscanthus Rhizosphere	MKNSRQPVAAEVREEPAASLLDRNTRPLENVEDLLMRTRVDVAELKRTGAREGFSELVADVTKLKSEVEQLQEPLG
Ga0105248_102459503	3300009177	Switchgrass Rhizosphere	AMKNSRQPVAAEAWEERAASLLERNTRPLENVEDLLMRTRVDLAELKRTGAREGLPELLADVTELKSEIEQLEAPPGVAGRLN*
Ga0105248_104162034	3300009177	Switchgrass Rhizosphere	MKNSRQPVAAEAWEERAASLLDRNTRPLENVEDLLMRTRVDLSELKRTGAREGLPELLADVTELKSEIEQLEAPPGV
Ga0105237_115869431	3300009545	Corn Rhizosphere	MKNSRQPVAAEAGKERASSSLGSNARSLENVEDLLRRTRVDVAELKRTGAREGFSELVADVTKLKSEVEQLEEPLRVAGRKT*
Ga0105238_103390792	3300009551	Corn Rhizosphere	NSRRRVAAVAAEKGPAGLLDRSARPLESVEDLLMRARVDLAELKRTGAREGLPELLDDVTELKREIEQIGEHSQSRRQ*
Ga0134125_124803021	3300010371	Terrestrial Soil	MKNTRQPIAVKARKDQAASLLNSGARQLENVEDLLMRARVDLAEVKRTGAREGLPELLADVTKLQSEVEQLEERPEAAGARSKAVSFGAY*
Ga0134128_112471571	3300010373	Terrestrial Soil	MKNSRQPVAVEVREEPAASLLDRNTRPLENVEDLLMRTRVDLAELKRTGAREGLPELLADVTELKSEIEQLEAPPGERRGNP*
Ga0105239_1000931012	3300010375	Corn Rhizosphere	MSNSRRRVAAVAAEEGPAGLLDRSARPLESVEDLLMRARVDLAELKRTGAREGLPELLDDVTELKREIEQIGEHSQSRRQ*
Ga0105239_105709722	3300010375	Corn Rhizosphere	MNDSRQPIAVDARKIRAVNLLNSGARSLENVEDLLMRARVDLVELKRTGSRERLSVLVADVTNLKSEIERLECPLVTGTEPPPAL*
Ga0105239_122377241	3300010375	Corn Rhizosphere	MKNSRQPVAVEAGKERASSSLGSNARSLENVEDLLRRTRVDVGELKRTGAREGFSELVADVTKLKSEVEQLEEPLRVAGRKA*
Ga0134124_115783631	3300010397	Terrestrial Soil	MKNSRQPVAAEAWEERAASLLDRNARPLENVEDLLMRTRVDLAELKRTGAREGWSELLADMTKLKSQLEQLQVPLEAD
Ga0134122_101796632	3300010400	Terrestrial Soil	MSNSRRRVAAVAAKKGPAELLDRSARPLESVEDLLMRARVDLAELKRTGAREGLPELLDDVTELKREIEQIGEHSQSRRQ*
Ga0137362_112700561	3300012205	Vadose Zone Soil	MKNSRQPIAVGARRERAVRLLNSGARHLENVEDLLMRARVDLVELKRTGFREGLPELVADVAKLKSEIERLEETQEEAST*
Ga0150985_1112499532	3300012212	Avena Fatua Rhizosphere	MKNSRQPVAVEVREEPAASLLDRNARPLENVEDLLMRTRVDVAELKRTGAREGFSELVADVTKLKSEVGQLEEPLGGARRKI*
Ga0150985_1129248371	3300012212	Avena Fatua Rhizosphere	MNIARCNSRQRVAVIAAEEGPADLLDSSARPLESVEALLMRARVDLAELKRTGAREGLPELLDDVTELKREIEKLERPPSPRP*
Ga0150985_1178103232	3300012212	Avena Fatua Rhizosphere	NDAMSNSRRRVAAVAAEKGPAGLLDRSARPLESVEDLLMRARVELAELKRTGAREGLPELLDDVTELKREIEQIGEHSQSRRQ*
Ga0137361_101840142	3300012362	Vadose Zone Soil	MKNSRQPIAVGARKERAVRLLNSGARHLENVEDLLMRARVDLVELKRTGFREGLPELVADVAKLKSEIERLEETQEEAST*
Ga0137361_112181022	3300012362	Vadose Zone Soil	MKNFPQPVAVEARKERAVNLLNSGARPLENVEDLLMRARVDLVELKRTGSRKGLPELVADVTKLKSEIERLEEPSGSK*
Ga0150984_1004758962	3300012469	Avena Fatua Rhizosphere	MKNSRQPVAVEAGIERASSLLDGNAWSLGNVEDLLMRTRVDVAELKRTGAREGFSELVADVTKLKSEVEQLQEPLGGARRKT*
Ga0150984_1030695621	3300012469	Avena Fatua Rhizosphere	MNIARYNSRQRVAVIAAEEGPADLLDSSARPLESVEALLMRARVDLAELKRTGAREGLPELLDDVTELKREIEKLERPPSPRP*
Ga0150984_1200393971	3300012469	Avena Fatua Rhizosphere	AASLLDRNTRPLENVEDLLMRTRVDLAELKRTGAREGLPELLADLTELKSEIEQLEAPPGVAGRLN*
Ga0137397_103530492	3300012685	Vadose Zone Soil	MKNSPQPIAVEARKDRAVRLLKRGARPLENVEDLLMRARVGLVELKRTGFREGLPELVADVTKLKSEIDRLEETLEVAGT*
Ga0137410_107349012	3300012944	Vadose Zone Soil	MKNSPQPIAVGARKERAVRLLNSGARHLENVEDLLMRARVDLVELKRTGFREGLPELVADVAKLKSEIERLEETQEEAST*
Ga0157369_120279071	3300013105	Corn Rhizosphere	MKNSRQPVAVEAREERAASLLDRNTRPLENVEDLLMRTRVDVAELKRTGAREGFSELVADVTKLKSEVEQLQEPLGGARRKT*
Ga0157374_121927842	3300013296	Miscanthus Rhizosphere	MNIARYNSRQRVAVIAAEEGPADLLDNSARSLESVEDLLMRARVDLAELKRTGAREGLPELLDDVTELKREIEKLERPPSPRP*
Ga0163162_101325863	3300013306	Switchgrass Rhizosphere	MKNSRQPVAAEVREEPAASLLDRNTRPLENVEDLLMRTRVDLAELKRTGAREGLPELLADVTELKSEIEQLEAPPEVAGRLN*
Ga0157379_125630402	3300014968	Switchgrass Rhizosphere	MKNSGQPVAVEVREEPAASLLDRNGRSLENVEDLLMRTRVDVAELKRTGAREGFSELVADVTKLKSEVEQLQEPLGGARRKT*
Ga0157376_100506761	3300014969	Miscanthus Rhizosphere	EAREERAASLLDRNTRPLENVEDLLMRTRVDLAELKRTGAREGLPELLADVTELKSEIEQLEAPPEVAGRLN*
Ga0157376_109568771	3300014969	Miscanthus Rhizosphere	EAREERAASLLDRNTRPLENVEDLLMRTRVDLAELKRTGAREGLPELLADVTELKSEIEQLEAPPGERRGNP*
Ga0132258_122501384	3300015371	Arabidopsis Rhizosphere	MKNSRQPVAAEAWEERAASLLDRNTRPLENVEDLLMRTRVDLAELKRTGAREGLPELLADVTELKSEIEQLEAP
Ga0132256_1014237072	3300015372	Arabidopsis Rhizosphere	MKNSRQPVAAEAWEERAASLLDRNTRPLENVEDLLMRTRVDLAELKRTGAREGLPELLADVTELKSEIEQLEAPPGVAGRLN*
Ga0163161_117402862	3300017792	Switchgrass Rhizosphere	MSNSRRRVAAVAAEKGPAGLLDRSARPLESVEDLLMRARVDLAELKRTGAREGLPELLDDVTELKREIEQIGEHSQSRRQ
Ga0184625_100187054	3300018081	Groundwater Sediment	MRNSGQPVAVEARNERATSLLNSGARPLENVEDLLMRARVDLAEIKRTGAREGLPELLADVTKLKSEIERLEERLGVCAGRKPLAA
Ga0137408_117827510	3300019789	Vadose Zone Soil	MKNSRQPIAVGARRERAVRLLNSGARHLENVEDLLMRARVDLVELKRTGFREGLPELVADVAKLKSEIERLEETQEEAST
Ga0206350_111134591	3300020080	Corn, Switchgrass And Miscanthus Rhizosphere	MKNSRQPVAVEAREERAASLLDRNTRPLENVEDLLMRTRVDLAELKRTGAREGLPELLADVTELKSEIEQLEAPPGVAGRLN
Ga0207697_100292262	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MKNSRQPVAVEAREERAASLLDRNTRPLENVEDLLMRTRVDLAELKRTGAREGLPELLADVTELKSEIEQLEAPPEVAGRLN
Ga0207642_101061962	3300025899	Miscanthus Rhizosphere	MKNSRQPVAAEAWEERAASLLDRNTRPLENVEDLLMRTRVDLAELKRTGAREGLPELLADVTELKSEIEQLEAPPEVAGRLN
Ga0207710_103652162	3300025900	Switchgrass Rhizosphere	MKNSRQPVAAEAWEERAASLLDRNTRPLENVEDLLMRTRVDLAELKRTGAREGLPELLADVTELKSEIEQLEAPPGERRGNP
Ga0207688_103286081	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	EERAASLLDRNTRPLENVEDLLMRTRVDLAELKRTGAREGLPELLADVTELKSEIEQLEAPPGERRSNP
Ga0207688_104974851	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	RRRVAAVAAEKGPAGLLDRSARPLESVEDLLMRARVDLAELKRTGAREGLPELLDDVTELKREIEQIGEHSQSRRQ
Ga0207680_103821473	3300025903	Switchgrass Rhizosphere	AMKNSRQPVAAEAWEERAASLLDRNTRPLENVEDLLMRTRVDLAELKRTGAREGLPELLADVTELKSEIEQLEAPPGERRGNP
Ga0207645_101226822	3300025907	Miscanthus Rhizosphere	MKNSRQPVAAEVREEPAASLLDRNTRPLENVEDLLMRTRVDLAELKRTGAREGLPELLADVTELKSEIEQLEAPPEVAGRLN
Ga0207643_100713494	3300025908	Miscanthus Rhizosphere	MKNSRQPVAVEAREERAASLLDRNTRPLENVEDLLMRTRVDLAELKRTGAREGLPELLADVTELKSEIEQLEAPPGERRGNP
Ga0207643_105523521	3300025908	Miscanthus Rhizosphere	MKNSRQPVAAEVREEPAASLLDRNTRPLENVEHLLMRTRVDLAELKRTGAREGLPELLADVTELKSEIEQLEAPPGVAGRLN
Ga0207695_107735552	3300025913	Corn Rhizosphere	MKNSRQPVAVEAREERAASLLDRNTRPLENVEDLLMRTRVDLAELKRTGAREGLPELLADVTELKSEIE
Ga0207671_106679702	3300025914	Corn Rhizosphere	MNIARYNSRQRVAVIAAEEGPADLLDNSARSLESVEDLLMRARVDLAELKRTGAREGLPELLDDVTELKRELEKLERPPSPRP
Ga0207662_101597101	3300025918	Switchgrass Rhizosphere	MKNSRQPVAVEAREERAASLLDRNTRPLENVEDLLMRTRVDLAELKRTGAREGLPELLADVTELKSE
Ga0207657_103488103	3300025919	Corn Rhizosphere	MSNSRRRVAAVAAEKGPAGLLDRSARPLESVEDLLMRARVDLAELKRTGAREGLHELLDDVTELKREIEQIGEHSQSRRQ
Ga0207681_102835132	3300025923	Switchgrass Rhizosphere	MNNFRQPISVHARKARAVRLLNGGARSLENIEDLLMRARVDLVELKRTGLREGLSELVADVTRLKGEIERLEEPREVMDS
Ga0207681_104278641	3300025923	Switchgrass Rhizosphere	MKNSRQPVAVEVREEPAASLLDRNARPLENVEDLLMRTRVDLAELKRTGAREGLPELLADVTELKSEIE
Ga0207694_102318922	3300025924	Corn Rhizosphere	NSRRRVAAVAAEKGPAGLLDRSARPLESVEDLLMRARVDLAELKRTGAREGLPELLDDVTELKREIEQIGEHSQSRRQ
Ga0207687_118608611	3300025927	Miscanthus Rhizosphere	MKNSRQPVAVEAREERAASLLDRNTRPLENVEDLLMRTRVDLAELKRTGAREGLPELLADVTELKSEIEQLEAPP
Ga0207644_105176751	3300025931	Switchgrass Rhizosphere	MKNSRQPVAVEAREERAASLLDRNTRPLENVEDLLMRTRVDLAELKRTGAREGLPELLADVTELKSEIEQLEAPPEVAG
Ga0207690_104576702	3300025932	Corn Rhizosphere	QPVAAEVREEPAASLLDRNTRPLENVEDLLMRTRVDLAELKRTGAREGLPELLADVTELKSEIEQLEAPPGVAGRLN
Ga0207706_101547416	3300025933	Corn Rhizosphere	MKNSRQPVAVEAGKERASSSLGSNARSLENVEDLLRRTRVDVAELKRTGAREGFSELVADVTKLKSEVEQLEEPLRVAGRKT
Ga0207706_110890021	3300025933	Corn Rhizosphere	MNDSRQPIAVEARKIRAVNLLNSGARSLENVEDLLMRARVDLVELKRTGSRERLSELVADVINLKSEIERLECPLVTGTEPPPAL
Ga0207686_103484981	3300025934	Miscanthus Rhizosphere	MKNSRQPVAVEAREERAASLLDRNTRPLENVEDLLMRTRVDLAELKRTGAREGLPELLADVTELKSEIEQLEAPPGER
Ga0207686_103853911	3300025934	Miscanthus Rhizosphere	MKNSRQPVAVEAREEPAASLLDRNTRPLENVEDLLMRTRVDLAELKRTGAREGLPELLADVTELKSEIE
Ga0207669_110336022	3300025937	Miscanthus Rhizosphere	MSNSRRRVAAVAAEKGPAGLLDRSARPLESVEDLLMRARVDLAELKRTGAREGLPELLDDVTELKREIEQIGEHSQ
Ga0207689_104125962	3300025942	Miscanthus Rhizosphere	MNIARYNSRQRVAVIAAEEGPADLLDNSARPLESVEDLLMRARVDLAELKRTGAREGLPELLDDVTELKRELEKLERPPSPRP
Ga0207679_102424903	3300025945	Corn Rhizosphere	MSNSRRRVAAVAAEKGPAGLLDRSARPLESVEDLLMRARVDLAELKRTGAREGLPELLDDVTELKREIEQ
Ga0207668_105288231	3300025972	Switchgrass Rhizosphere	MNDSRQPIAVDARKIRAVNLLNSGARSLENVEDLLMRARVDLVELKRTGSRERLSELVADVINLKSEIERLECPLVTGTEPPPAL
Ga0207640_101669211	3300025981	Corn Rhizosphere	QPVAVEAREERAASLLDRNTRPLENVEDLLMRTRVDLAELKRTGAREGLPELLADVTELKSEIEQLEAPPGERRGNP
Ga0207640_113249141	3300025981	Corn Rhizosphere	AMSNSRRRVAAVAAEKGPAELLDRSARPLESVEDLLMRARVDLAELKRTGAREGLPELLDDVTELKREIEQIGEHSQSRRQ
Ga0207677_113760581	3300026023	Miscanthus Rhizosphere	MKNSRQPVAVEAGKERASSSLGSNARSLENVEDLLRRTRVDVAELKRTGAREGFSELVADVTKLKSEVEQLEEPLR
Ga0207678_102901082	3300026067	Corn Rhizosphere	MNIARYNSRQRVAVIAAEEGPADLLDNSARSLESVEDLLMRARVDLAELKRTGAREGLPELLDDVTELKREIEQIGEHSQSRRQ
Ga0207702_105721471	3300026078	Corn Rhizosphere	MSNSRRRVAAVAAEKGPAGLLDRSARPLESVEDLLMRARVDLAELKRTGAREGLPELFDDVTELKREIEQIGEH
Ga0207641_106927431	3300026088	Switchgrass Rhizosphere	IAAEEGPADLLDNSARSLESVEDLLMRARVDLAELKRTGAREGLPELLDDVTELKRELEKLERPPSPRP
Ga0207648_106023611	3300026089	Miscanthus Rhizosphere	MKNSRQPVAAEVREEPAASLLDRNTRPLENVEDLLMRTRVDLAELKRTGAREGLPELLADVTELKSEIE
Ga0207675_1006151931	3300026118	Switchgrass Rhizosphere	MKNSRQPVAAEAWEERAASLLDRNTRPLENVEDLLMRTRVDLAELKRTGAREGLPELLADVTELKSEIEQLEAPP
Ga0207675_1006586421	3300026118	Switchgrass Rhizosphere	MKNSRQPVAVEAGKERASSSLGSNARSLENVEDLLRRTRVDVAELKRTGTREGFSELVADVTKLKSEVEQLEEPLRVAGRKI
Ga0268266_100212151	3300028379	Switchgrass Rhizosphere	MKNSRQPVAVEVREEPAASLLDRNARPLENVEDLLMRTRVDLAELKRTGAREGLPELLADVTELKSEIEQLEAPPEVAGRLN
Ga0268265_101037372	3300028380	Switchgrass Rhizosphere	MKNSRQPVAVEAGKERASSSLGSNARSLENVEDLLRRTRVDVAELKRTGTREGFSELVADVTKLKSEVEQLEEPLRVAGRKT
Ga0268264_114672841	3300028381	Switchgrass Rhizosphere	LGWITRLIMNNFRQPISVHARKARAVRLLNGGARSLENIEDLLMRARVDLVELKRTGLREGLSELVADVTRLKGEIERLEEPREVMDS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F061055

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences