Metagenome / Metatranscriptome Family F061054

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F061054
Family Type	Metagenome / Metatranscriptome
Number of Sequences	132
Average Sequence Length	75 residues
Representative Sequence	MIEDISQDHPDRMRIVIALNAEQCPDCDAHGFDYKPRVGISRNVFCKACDQGFNVSPDPPKAYFVQRIGRRARA
Number of Associated Samples	103
Number of Associated Scaffolds	132

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	28.79 %
% of genes near scaffold ends (potentially truncated)	43.94 %
% of genes from short scaffolds (< 2000 bps)	96.97 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.70

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (58.333 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere (9.091 % of family members)
Environment Ontology (ENVO)	Unclassified (58.333 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (67.424 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 8.82% β-sheet: 29.41% Coil/Unstructured: 61.76%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.70
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.70
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
b.60.1.4: Hypothetical protein YodA	d1oeja_	1oej	0.56871
b.33.1.1: Rieske iron-sulfur protein (ISP)	d1jm1a_	1jm1	0.56266
b.30.5.0: automated matches	d4rnla_	4rnl	0.54466
c.66.1.0: automated matches	d4rv9a1	4rv9	0.54385
e.59.1.1: FdhE-like	d2fiya1	2fiy	0.54363

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 132 Family Scaffolds
PF07369	DUF1488	3.79
PF07750	GcrA	3.79
PF02954	HTH_8	2.27
PF00072	Response_reg	1.52
PF13340	DUF4096	1.52
PF01068	DNA_ligase_A_M	0.76
PF00589	Phage_integrase	0.76
PF02518	HATPase_c	0.76

COG ID	Name	Functional Category	% Frequency in 132 Family Scaffolds
COG5352	Uncharacterized conserved protein	Function unknown [S]	3.79
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	0.76
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.76

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	58.33 %
Unclassified	root	N/A	41.67 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	58.33 %
Unclassified	root	N/A	41.67 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	58.33 %
Unclassified	root	N/A	41.67 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	54.55 %
Unclassified	root	N/A	41.67 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	54.55 %
Unclassified	root	N/A	41.67 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	51.52 %
Unclassified	root	N/A	41.67 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	2.27 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	50.76 %
Unclassified	root	N/A	41.67 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.27 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	50.76 %
Unclassified	root	N/A	41.67 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.27 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.67 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	31.82 %
Bradyrhizobium japonicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	2.27 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.27 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.67 %
Bradyrhizobium sp. sBnM-33	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. sBnM-33	13.64 %
Bradyrhizobium sp. JYMT SZCCT0428	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. JYMT SZCCT0428	9.09 %
Bradyrhizobium sp. CCBAU 051011	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCBAU 051011	3.79 %
Bradyrhizobium sp. MOS002	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. MOS002	3.79 %
Bradyrhizobium japonicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	2.27 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.27 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	0.76 %
Bradyrhizobium sp. AUGA SZCCT0431	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AUGA SZCCT0431	0.76 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.76 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459005\|F1BAP7Q01BIBAZ	Not Available	535	Open in IMG/M
3300004479\|Ga0062595_101373195	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	642	Open in IMG/M
3300005166\|Ga0066674_10149279	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1103	Open in IMG/M
3300005169\|Ga0066810_10161171	Not Available	542	Open in IMG/M
3300005330\|Ga0070690_100132316	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1686	Open in IMG/M
3300005335\|Ga0070666_10107238	Not Available	1930	Open in IMG/M
3300005338\|Ga0068868_100233618	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1543	Open in IMG/M
3300005339\|Ga0070660_101900341	Not Available	507	Open in IMG/M
3300005344\|Ga0070661_100650562	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	856	Open in IMG/M
3300005345\|Ga0070692_10164088	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. MOS002	1275	Open in IMG/M
3300005347\|Ga0070668_100246917	All Organisms → cellular organisms → Bacteria	1480	Open in IMG/M
3300005347\|Ga0070668_101425594	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. sBnM-33	632	Open in IMG/M
3300005347\|Ga0070668_102092350	Not Available	522	Open in IMG/M
3300005365\|Ga0070688_100127489	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1712	Open in IMG/M
3300005438\|Ga0070701_10137278	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1395	Open in IMG/M
3300005440\|Ga0070705_100748965	Not Available	772	Open in IMG/M
3300005455\|Ga0070663_100387149	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. MOS002	1140	Open in IMG/M
3300005456\|Ga0070678_100881661	Not Available	817	Open in IMG/M
3300005459\|Ga0068867_100171061	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1721	Open in IMG/M
3300005459\|Ga0068867_100243306	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1460	Open in IMG/M
3300005459\|Ga0068867_101306876	Not Available	670	Open in IMG/M
3300005466\|Ga0070685_10129575	Not Available	1576	Open in IMG/M
3300005466\|Ga0070685_10612938	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. sBnM-33	785	Open in IMG/M
3300005543\|Ga0070672_100149160	All Organisms → cellular organisms → Bacteria	1934	Open in IMG/M
3300005543\|Ga0070672_100821110	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. JYMT SZCCT0428	819	Open in IMG/M
3300005544\|Ga0070686_101270694	Not Available	614	Open in IMG/M
3300005564\|Ga0070664_102219892	Not Available	521	Open in IMG/M
3300005577\|Ga0068857_102150756	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	548	Open in IMG/M
3300005578\|Ga0068854_101108407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. JYMT SZCCT0428	705	Open in IMG/M
3300005614\|Ga0068856_101559446	Not Available	674	Open in IMG/M
3300005616\|Ga0068852_101181818	Not Available	786	Open in IMG/M
3300005719\|Ga0068861_100977585	Not Available	806	Open in IMG/M
3300005719\|Ga0068861_101662709	Not Available	630	Open in IMG/M
3300005842\|Ga0068858_101934472	Not Available	583	Open in IMG/M
3300005844\|Ga0068862_100831980	All Organisms → cellular organisms → Bacteria	903	Open in IMG/M
3300005844\|Ga0068862_101182798	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. JYMT SZCCT0428	762	Open in IMG/M
3300006032\|Ga0066696_10564126	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. sBnM-33	743	Open in IMG/M
3300006034\|Ga0066656_11092453	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. sBnM-33	513	Open in IMG/M
3300006058\|Ga0075432_10590404	Not Available	507	Open in IMG/M
3300006177\|Ga0075362_10633591	Not Available	554	Open in IMG/M
3300006573\|Ga0074055_11500798	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. JYMT SZCCT0428	612	Open in IMG/M
3300006881\|Ga0068865_100354233	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1190	Open in IMG/M
3300006881\|Ga0068865_100863117	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. MOS002	785	Open in IMG/M
3300009012\|Ga0066710_101125501	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1215	Open in IMG/M
3300009036\|Ga0105244_10197117	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. sBnM-33	950	Open in IMG/M
3300009094\|Ga0111539_11047284	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	948	Open in IMG/M
3300009148\|Ga0105243_11581973	Not Available	681	Open in IMG/M
3300009156\|Ga0111538_11841477	Not Available	762	Open in IMG/M
3300009553\|Ga0105249_11253921	Not Available	813	Open in IMG/M
3300010038\|Ga0126315_10044864	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCBAU 051011	2376	Open in IMG/M
3300010371\|Ga0134125_10546410	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCBAU 051011	1282	Open in IMG/M
3300010371\|Ga0134125_10929676	Not Available	955	Open in IMG/M
3300010371\|Ga0134125_12478196	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. JYMT SZCCT0428	564	Open in IMG/M
3300010375\|Ga0105239_11379649	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. JYMT SZCCT0428	813	Open in IMG/M
3300010375\|Ga0105239_12892244	Not Available	560	Open in IMG/M
3300010399\|Ga0134127_11136771	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. sBnM-33	846	Open in IMG/M
3300010399\|Ga0134127_11325507	Not Available	789	Open in IMG/M
3300010400\|Ga0134122_10390863	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1225	Open in IMG/M
3300010400\|Ga0134122_13068224	Not Available	522	Open in IMG/M
3300010401\|Ga0134121_13280957	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. JYMT SZCCT0428	501	Open in IMG/M
3300010403\|Ga0134123_10766567	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	953	Open in IMG/M
3300010403\|Ga0134123_11588982	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. sBnM-33	701	Open in IMG/M
3300011119\|Ga0105246_10810188	Not Available	832	Open in IMG/M
3300012208\|Ga0137376_10344826	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1293	Open in IMG/M
3300012353\|Ga0137367_10835615	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AUGA SZCCT0431	638	Open in IMG/M
3300012362\|Ga0137361_10370005	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. sBnM-33	1316	Open in IMG/M
3300012685\|Ga0137397_10640828	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. sBnM-33	790	Open in IMG/M
3300012922\|Ga0137394_10759065	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. sBnM-33	814	Open in IMG/M
3300012923\|Ga0137359_10224254	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCBAU 051011	1678	Open in IMG/M
3300012929\|Ga0137404_10921732	Not Available	797	Open in IMG/M
3300012951\|Ga0164300_10865856	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. sBnM-33	567	Open in IMG/M
3300012957\|Ga0164303_10273296	Not Available	981	Open in IMG/M
3300012960\|Ga0164301_10606294	Not Available	809	Open in IMG/M
3300012985\|Ga0164308_10708546	Not Available	869	Open in IMG/M
3300013297\|Ga0157378_10244480	Not Available	1715	Open in IMG/M
3300013297\|Ga0157378_10312805	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. MOS002	1524	Open in IMG/M
3300013297\|Ga0157378_11428443	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. JYMT SZCCT0428	735	Open in IMG/M
3300013306\|Ga0163162_10224394	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2008	Open in IMG/M
3300013306\|Ga0163162_10658198	Not Available	1171	Open in IMG/M
3300013306\|Ga0163162_12276460	Not Available	622	Open in IMG/M
3300013308\|Ga0157375_11318244	Not Available	849	Open in IMG/M
3300013308\|Ga0157375_12520754	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. sBnM-33	614	Open in IMG/M
3300014968\|Ga0157379_10170039	All Organisms → cellular organisms → Bacteria	1967	Open in IMG/M
3300014968\|Ga0157379_10884853	Not Available	846	Open in IMG/M
3300015245\|Ga0137409_10167805	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1998	Open in IMG/M
3300015371\|Ga0132258_10581865	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCBAU 051011	2809	Open in IMG/M
3300015373\|Ga0132257_104549642	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	505	Open in IMG/M
3300015374\|Ga0132255_100960389	Not Available	1280	Open in IMG/M
3300015374\|Ga0132255_102009554	Not Available	880	Open in IMG/M
3300017965\|Ga0190266_10514305	Not Available	701	Open in IMG/M
3300018073\|Ga0184624_10309721	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	707	Open in IMG/M
3300018081\|Ga0184625_10631115	Not Available	521	Open in IMG/M
3300018433\|Ga0066667_10106682	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1879	Open in IMG/M
3300018481\|Ga0190271_12654107	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	601	Open in IMG/M
3300018482\|Ga0066669_10809531	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. sBnM-33	830	Open in IMG/M
3300019789\|Ga0137408_1143767	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. sBnM-33	1145	Open in IMG/M
3300019867\|Ga0193704_1067437	Not Available	676	Open in IMG/M
3300022756\|Ga0222622_10184451	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1373	Open in IMG/M
3300025899\|Ga0207642_10097363	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCBAU 051011	1468	Open in IMG/M
3300025899\|Ga0207642_10407710	Not Available	815	Open in IMG/M
3300025903\|Ga0207680_10111846	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1773	Open in IMG/M
3300025903\|Ga0207680_10584161	Not Available	799	Open in IMG/M
3300025923\|Ga0207681_10491452	Not Available	1004	Open in IMG/M
3300025927\|Ga0207687_10616417	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. sBnM-33	916	Open in IMG/M
3300025930\|Ga0207701_10177079	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1882	Open in IMG/M
3300025932\|Ga0207690_10418689	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. sBnM-33	1071	Open in IMG/M
3300025933\|Ga0207706_10254028	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1535	Open in IMG/M
3300025937\|Ga0207669_10412062	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1061	Open in IMG/M
3300025938\|Ga0207704_10732618	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. MOS002	821	Open in IMG/M
3300025940\|Ga0207691_10769454	Not Available	810	Open in IMG/M
3300025942\|Ga0207689_10809987	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	790	Open in IMG/M
3300025961\|Ga0207712_12045104	Not Available	513	Open in IMG/M
3300026023\|Ga0207677_10401601	Not Available	1162	Open in IMG/M
3300026067\|Ga0207678_11149536	Not Available	687	Open in IMG/M
3300026089\|Ga0207648_11922370	Not Available	553	Open in IMG/M
3300026118\|Ga0207675_101176624	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. sBnM-33	787	Open in IMG/M
3300026118\|Ga0207675_102641185	Not Available	511	Open in IMG/M
3300026121\|Ga0207683_11357395	Not Available	658	Open in IMG/M
3300026310\|Ga0209239_1090886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1307	Open in IMG/M
3300028802\|Ga0307503_10593984	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	610	Open in IMG/M
3300031170\|Ga0307498_10006890	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. JYMT SZCCT0428	2099	Open in IMG/M
3300031184\|Ga0307499_10168611	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. JYMT SZCCT0428	654	Open in IMG/M
3300031184\|Ga0307499_10231662	Not Available	582	Open in IMG/M
3300031720\|Ga0307469_10214253	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1517	Open in IMG/M
3300031720\|Ga0307469_12024191	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. JYMT SZCCT0428	559	Open in IMG/M
3300031740\|Ga0307468_100462831	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. sBnM-33	992	Open in IMG/M
3300031740\|Ga0307468_102182990	Not Available	535	Open in IMG/M
3300032013\|Ga0310906_10733552	All Organisms → cellular organisms → Bacteria	693	Open in IMG/M
3300032180\|Ga0307471_102679263	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. JYMT SZCCT0428	632	Open in IMG/M
3300032205\|Ga0307472_100515125	Not Available	1035	Open in IMG/M
3300032205\|Ga0307472_101241744	Not Available	714	Open in IMG/M
3300034671\|Ga0314796_188821	Not Available	503	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	52.27%
Environmental	Environmental	47.73%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	52.27%
Terrestrial	Environmental → Terrestrial	45.45%
Aquatic	Environmental → Aquatic	2.27%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	45.45%
Rhizosphere	Host-Associated → Plants → Rhizosphere	27.27%
Rhizoplane	Host-Associated → Plants → Rhizoplane	24.24%
Sediment	Environmental → Aquatic → Sediment	2.27%
Roots	Host-Associated → Plants → Roots	0.76%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	39.39%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	19.70%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.64%
Soil	Host-Associated → Plants → Rhizosphere → Soil	13.64%
Loam	Environmental → Terrestrial → Soil → Loam	6.06%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.03%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.27%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.52%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.76%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	19.70%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.64%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	13.64%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.06%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.30%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.03%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.27%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.52%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.52%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.76%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.76%

Habitat	Taxonomy	Distribution
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	9.09%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.33%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	7.58%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.82%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.30%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	5.30%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	5.30%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	5.30%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	3.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.79%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.03%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.03%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.03%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.03%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	3.03%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.27%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.27%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.27%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.27%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.52%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.52%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.52%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.52%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.52%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.76%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.76%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.76%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.76%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.76%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459005	Grass soil microbial communities from Rothamsted Park, UK - July 2009 direct MP BIO1O1 lysis 0-21cm	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005169	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006177	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2	Host-Associated	Open in IMG/M
3300006573	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009036	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300019867	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m1	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300034671	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24R1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
E41_03702890	2170459005	Grass Soil	STLAATIPCSNGSVDPVIEDIPHDHPDRMRIVIALNHDQCPDCDAXGFDYKPRIGTSRNIFCKVCHQGFNVAPDPPKXFFVQRIGRRPRG
Ga0062595_1013731952	3300004479	Soil	MIEDISQDHPDRMRIVIALNAEQCPDCHAHGFDYKPRVGISRNVFCKACNRGFNVTPDPPKVYFVQRIGRRPRA*
Ga0066674_101492793	3300005166	Soil	MIEDISQDHPDRMRIVIALNAGQCPDCDGYGFDFKPRVGISRNIFCKPATRASTSRPTRTKVYFVQRIGRRSRA*
Ga0066810_101611711	3300005169	Soil	MIEDIAQDHPDRLRIVIALNAERCPDCDAHGFDYKPRVGISRNVFCKACDQGFNVSPDPPKVHFVQRIGRRPRA*
Ga0070690_1001323161	3300005330	Switchgrass Rhizosphere	MIEDISQDHPDRMRIVIALNAGQCPNCDAFGFDLKPRVGMSRNIFCKACDQGFNVAPDPPKAYFVQRIGRRTRA*
Ga0070666_101072384	3300005335	Switchgrass Rhizosphere	LIKDIPQDHPDYMRIVIALNEGQCPDCDARVLDFKPRAGMSRNIFCKACDQGFNVEPDPPRVLFVQRIGRRSRA*
Ga0068868_1002336183	3300005338	Miscanthus Rhizosphere	MIEDISQDHPDRMRIVMALNAGQCPDCDAYGFDLKPRVGMSRNIFCKACDQGFNISPDAPKVYFVQRIGRRRPA*
Ga0070660_1019003411	3300005339	Corn Rhizosphere	IVIALNAGQCPDCDAYGFDLKPRVGISRNIFCKACEQGFNVSPDPPKLYFVQRIGRRSRA
Ga0070661_1006505621	3300005344	Corn Rhizosphere	DRMRSVIALNAERYPDCDAHGFDYKPAVYSRNVFCKACDQGFNVTPDSPKVYLVQRIGRRPRA*
Ga0070692_101640883	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MIEDISQDHPDRMRIVIALNAGQCPDCDAYGFDLKPRVGISRNIFCKACEQGFNVSPDPPKLYFVQRIGRRSRA*
Ga0070668_1002469174	3300005347	Switchgrass Rhizosphere	VIEDISQDHPDRMRIVIALNGERCPDCDAHGFDYKPRVGISRNIFCKACDQGFNVSPDPPNVHFV*
Ga0070668_1014255941	3300005347	Switchgrass Rhizosphere	MIEDISQDHPDRMRIVNSLNVEQCPDCDAYGFDYKPRVGISRNIFCKVCDQGFNVSPDPSKVFFVQRMAADRARDIRDDLPRA
Ga0070668_1020923501	3300005347	Switchgrass Rhizosphere	MIEDIPQDHPDRMRIVMALNAGQCPDCDAYGFDLKPRVGMSRNIFCKACDQGFNISPDALKVYFVQRIGRRPCA*
Ga0070688_1001274891	3300005365	Switchgrass Rhizosphere	RIVIALNAGQCPNCDAFGFDLKPRVGMSRNIFCKACDQGFNVAPDPPKAYFVQRIGRRTRA*
Ga0070701_101372781	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MIEDISQDHPDRMRIVIALNAGQCPNCDAFGFDLKPRVGMSRNIFCKACDQGLNVAPDPPKAYFVQRISRRTRA*
Ga0070705_1007489652	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MIEDISQDHPDRIRIVIALNAERCPDCDAHGFDYKPRVGISRNVFCKACDQGFNVSPDPPKVHFVQRIGRRPRA*
Ga0070663_1003871491	3300005455	Corn Rhizosphere	GDLDDISAMIEDISQDHPDRMRIVIALNAGQCPDCDAYGFDLKPRVGISRNIFCKACEQGFNVSPDPPKLYFVQRIGRRSRA*
Ga0070678_1008816612	3300005456	Miscanthus Rhizosphere	HPDRMRIVIALNAERCPDCDAHGFDYKPRVGISRNIFCKACDQGFNVSPDPPNVHFV*
Ga0068867_1001710611	3300005459	Miscanthus Rhizosphere	SAMIEDISQDHPDRMRIVIALNAGQCPNCDAFGFDLKPRVGMSRNIFCKACDQGLNVAPDPPKAYFVQRISRRTRA*
Ga0068867_1002433061	3300005459	Miscanthus Rhizosphere	MIEDISQDHPDRMRIVIALNAGQCPDCDAYGFDLKPRVGISRNIFCKACDQGFNVSPDPPKVYFVQ
Ga0068867_1013068761	3300005459	Miscanthus Rhizosphere	MIEDIAQDHPDRLRIVIALNAERCPDCDAHGFDYKPRVGISRNVFCKACDQGFNVSPDPPKVHFVQRIGRRPRDVSHS*
Ga0070685_101295751	3300005466	Switchgrass Rhizosphere	DHPDYMRIVIALNEGQCPDCDARVLDFKPRAGMSRNIFCKACDQGFNVEPDPPRVLFVQRIGRRSRA*
Ga0070685_106129382	3300005466	Switchgrass Rhizosphere	MRIVIALNAGQCPNCDAFGFDLKPRVGMSRNIFCKACDQGLNVAPDPPKAYFVQRISRRTRA*
Ga0070672_1001491604	3300005543	Miscanthus Rhizosphere	ISAMIEDISQDHPDRMRVVIALNAEQCPDCGAHGFHHKPRIGMSRNIFCKACDQGFNISQDPPRVFFVQRIGRRSRA*
Ga0070672_1008211103	3300005543	Miscanthus Rhizosphere	DDISAMIEDISQDHPDRMRIVIALNAGQCPNCDAFGFDLKPRVGMSRNIFCKACDQGLNVAPDPPKAYFVQRISRRTRA*
Ga0070686_1012706943	3300005544	Switchgrass Rhizosphere	DRMRIVIALNAGQCPDCDAYGFDLKPRVGISRNIFCKACEQGFNVSPDPPKLYFVQRIGRRSRA*
Ga0070664_1022198922	3300005564	Corn Rhizosphere	MIEDISQDHPDRMRIVIALNAERCPDCDAHGFDYKPRVGISRNIFCKGFNVSPDPPKVHFEQLIGRRPRA*
Ga0068857_1021507561	3300005577	Corn Rhizosphere	SVLIKDIPQDHPDYMRIVIALNEGQCPDCDARVLDFKPRAGMSRNIFCKACDQGFNVEPDPPRVLFVQRIGRRSRA*
Ga0068854_1011084071	3300005578	Corn Rhizosphere	MIEDISQDHPDRIRIVIALNAERCPDCDAHGFDYKPRVGISRNVFCKACNRGFNVTPDPPKVYFVQRIGRRPRA*
Ga0068856_1015594462	3300005614	Corn Rhizosphere	MIEDISQDHPDRMRIVIALNAGRCPECNACGFDLKPRVGISRNIFCRACDQGFNVSPDPPKVHFVQRIGRRPRA*
Ga0068852_1011818181	3300005616	Corn Rhizosphere	DISAMIEDISQDHPDRMRIVIALNAEQCPDCHAHGFDYKPRVGISRNVFCKACDQGFNVAPDPPKVFFVQRIGRRARA*
Ga0068861_1009775854	3300005719	Switchgrass Rhizosphere	PDRMRIVMALNAGQCPDCDAYGFDLKPRVGMSRNIFCKACDQGFNISPDAPKVYFVQRIGRRRPA*
Ga0068861_1016627091	3300005719	Switchgrass Rhizosphere	LDDISAMIEDISQDHPDRMRIVIALNAEQCPDCHAHGFDYKPRVGISRNVFCKACDQGFNVAPDPPKVFFVQRIGRRARA*
Ga0068858_1019344721	3300005842	Switchgrass Rhizosphere	GDISAMIEDISQDHPDRMRIVIALNAGQCPDCDAYGFDLKPRVGISRNIFCKACEQGFNVSPDPPQLYFVQRIGRRSRA*
Ga0068862_1008319802	3300005844	Switchgrass Rhizosphere	MIEDISQDHPDRMRIVMALNAGQCPDCDAYGFDLKPRVGMSRNIFCKACDQGFNISQDPPRVFFVQRIGRRSRA*
Ga0068862_1011827983	3300005844	Switchgrass Rhizosphere	LPLRLGDLDDISAMIEDISQDHPDRMRIVIALNAGQCPNCDAFGFDLKPRVGMSRNIFCKACDQGLNVAPDPPKAYFVQRISRRTRA*
Ga0066696_105641262	3300006032	Soil	MIEDISQDHPDRMRIVIALNAGQCPDCDGYGFDFKPRVGISRNIFCKACDQGFNVAPDPPKVYFVQRIGRRSRA*
Ga0066656_110924532	3300006034	Soil	MIEDISQDHPDRMRIVIALNAGQCPDCDGYGFDFTPRVGISRNIFCKPATRASTSRPTHTKVYFVQRIGRRSRA*
Ga0075432_105904042	3300006058	Populus Rhizosphere	RMRIVIALNVEQCPDCHAYGFDYKPRVGISRNVFCKACDQGFNISPDPPRVFFVQRIGRRARA*
Ga0075362_106335912	3300006177	Populus Endosphere	HPDRMRIVIALNAGQCPHCSAYGFDLKPRVGISRNIFCKACDQGFNVSPDPPKAYFVQRIGRGTRA*
Ga0074055_115007981	3300006573	Soil	QDHPDRMRAVTALNDRTVPGLDAHGFDYKPRVGISRNVFCKACDQGFNVTPDPPKVYFVQRIGRRPRA*
Ga0068865_1003542331	3300006881	Miscanthus Rhizosphere	MIEDISQDHPDRMRIVMALNAGQCPDCDAYGFDLKPRVGMSRNIFCKACDQGFNISPDPPRVFFVQRIGRRSRA*
Ga0068865_1008631171	3300006881	Miscanthus Rhizosphere	ISQDHPDRMRIVIALNAGQCPDCDAYGFDLKPRVGISRNIFCKACEQGFNVSPDPPKLYFVQRIGRRSRA*
Ga0066710_1011255012	3300009012	Grasslands Soil	MIEDISQDHPDRMRIVIALNAGQCPVCDGYGFDFKPRVGISRNIFCKACDQGFNVAPDPPKVYFVQRIGRRSRA
Ga0105244_101971172	3300009036	Miscanthus Rhizosphere	MIEDISQDHPDRMRIVIALNAEQCPDCHAHGFDYKPRVGISRNVFCKACDQGFNVSPDPPKAYFVQRIGRRARA*
Ga0111539_110472843	3300009094	Populus Rhizosphere	AMIEDISQDHPDRMRIVIALNAGQCPDCGAYGFDLKPRVGISRNIFCKACDQGFNVSPDPPKAYFVQRIGRGTRA*
Ga0105243_115819731	3300009148	Miscanthus Rhizosphere	ISAMIEDISQDHPDRMRIVMALNAGQCPDCDAYGFDLKPRVGMSRNIFCKACDQGFNISPDAPKVYFVQRIGRRRPA*
Ga0111538_118414771	3300009156	Populus Rhizosphere	MIEDISQDHPDRMRIVIALNAGQCPHCSAYGFDLKPRVGISRNIFCKVCDQGFNVSPDPPKAYFVQRIGRRPHT*
Ga0105249_112539214	3300009553	Switchgrass Rhizosphere	FGDLGAISAMIEDISQDHPDRMRIVMALNAGQCPDCDAYGFDLKPRVGMSRNIFCKACDQGFNISPDAPKVYFVQRIGRRRPA*
Ga0126315_100448644	3300010038	Serpentine Soil	MGVTFALIEDISQDHPDRIVIALNAEQCPDCDAHGFDHKPRIGMSRNIFCKACDQGFNISPDPPRVFFV*
Ga0134125_105464101	3300010371	Terrestrial Soil	MIEDISQDHPDRMRIVIALYAERCPDCDAHGFDYKPRVGISRNVFCKACNRGFNVTPDPPKVHFVQRIGRRPRA*
Ga0134125_109296761	3300010371	Terrestrial Soil	LGCLPLRLGDLDDISAMIEDISQDHPDRMRIVIALNAEQCPDCHAHGFDYKPRVGISRNVFCKACDQGFNVAPDPPKVFFVQRIGRRARA*
Ga0134125_124781962	3300010371	Terrestrial Soil	DHPDRMRIVIALNAGQCPNCDAFGFDLKPRVGMSRNIFCKACDQGLNVAPDPPKAYFVQRISRRTRA*
Ga0105239_113796492	3300010375	Corn Rhizosphere	MIEDIAQDHPDRLRIVIALNAERCPDCDAHGFDYKPRVGISRNVFCKACDQGFNVTPDPPKVYFVQRIGRRPRA*
Ga0105239_128922442	3300010375	Corn Rhizosphere	CLPLRLGDLDDISAMIEDISQDHPDRMRIVIALNAGQCPDCDAYGFDLKPRVGMSRNIFCKACDQGFNISPDALKVYFVQRIGRRSRA*
Ga0134127_111367712	3300010399	Terrestrial Soil	MIEDISQDHPDRMRIVIALNAEQCPDCHAHGFDYKPRVGISRNVFCKACDQGFNVAPDPPKAYFVQRIGRRTRA*
Ga0134127_113255071	3300010399	Terrestrial Soil	LGCLPLRLGDLDDISAMIEDISQDHPDRMRIVIALNAGQCPNCDAFGFDLKPRVGMSRNIFCKACDQGFNVAPDQPKVFFVQRIGRRARA*
Ga0134122_103908632	3300010400	Terrestrial Soil	LDDLGVTFALIEDISQDHPDRMRIVIALNVEQCPDCHAYGFDYKPRVGISRNVFCKACDQGFNVAPDPPKAYFVQRIGRRTRA*
Ga0134122_130682241	3300010400	Terrestrial Soil	MIEDIAQDHPDRLRIVIALNAERCPDCDAHGFDYKPRVGNSRNVFSKACDQGFNVSPDPPKVHFVLRIGRRPRDV
Ga0134121_132809571	3300010401	Terrestrial Soil	ISTMIEDISQDHPDRMRIVIALNAERCPDCDAHGFDYKPRVGISRNVFCKACDQGFNVSPDPPKAYFVQRISRRTRA*
Ga0134123_107665673	3300010403	Terrestrial Soil	VIEDISRDHPDRMRIVIALNAERYPDCDAHGFDYKPRVGISRNVFCKACDQGFNVTPDPPKVYFVQRIGRRPRA*
Ga0134123_115889821	3300010403	Terrestrial Soil	MIEDISQDHPDRMCIVMALNAGQCPDCDAYGFDLKPRVGMSRNIFCKACDQGFNISPDAPKVYFVQRIG
Ga0105246_108101883	3300011119	Miscanthus Rhizosphere	RFGDLGAISAMIEDISQDHPDRMRIVMALNAGQCPDCGAYGFDLKPRVGMSRNIFCKACDQGFNISPDAPKVYFVQRIGRRRPA*
Ga0137376_103448262	3300012208	Vadose Zone Soil	LDDIGVTFALIEDISQNHPDRMRIVIALNAEQCPDCDAHGFDHKPRIGMSRNIFCKACDQGFNISPDPPRVFFVQRIGRRARA*
Ga0137367_108356151	3300012353	Vadose Zone Soil	LFCRPLRFGDLGVAFALIEDIPHDHPDHMRIVVALNVEPYLDCDAYGFNYKLRIGMSRNIFCKACDQGFNVASH*
Ga0137361_103700052	3300012362	Vadose Zone Soil	MTEDIPQDHPDHIRIVIALNAGKCPDCGAYGFDLKPRIGMSRNIFCKACDQGFNVAPDPPGVFFVQRLGRRSRA*
Ga0137397_106408282	3300012685	Vadose Zone Soil	MTEDIPQDHPDHIRIVIALNAGKCPDCGAHGLDLEPRIGMSRNIFCKACDQGFNVAPDPPGVFFVQRIGRRARV*
Ga0137394_107590652	3300012922	Vadose Zone Soil	MTEDIPQDHPDHIRIVIALNAGKCPDCGAYGFDLKPRVGISRNIFCKACDQGFNVAADPPKVYFVQRIGRRTRA*
Ga0137359_102242541	3300012923	Vadose Zone Soil	MGVTFALIEDISQNHPDRMRIVIALNAEQCPDCDAHGFDHKPRIGMSRNIFCKACDQGFNISPDPPRVFFVQRIGRRARA*
Ga0137404_109217322	3300012929	Vadose Zone Soil	LVYRPLRLGDLGDISAMTEDISQDHPDHMRIVNSLNAEQCPDCGAHGFDLKPRIGMSRNIFCKACDQGFNVVPDPPGVFFVQRIGRRARA*
Ga0164300_108658562	3300012951	Soil	MIEDISQDHPDRMRIVIALNGERCPDCDAHGFDYKPRVGISRNVFCKACDQGFIVTPRPPKV
Ga0164303_102732963	3300012957	Soil	MIEDISQDHPDRMRIVIALNAGQCPNCDAFGFDLKPRVGMSRNIFCKACDQGFNVAPDPPKAYFVQRIGRRSRA*
Ga0164301_106062941	3300012960	Soil	LVYLPLRLGDLDDISAMIEDISQDHPDRMRIVIALNAERCPDCDAHGFDYKPRVGISRNVFCKACDQGFTPDSPKVYFVQRIGRRPRA*
Ga0164308_107085461	3300012985	Soil	LVYLPLRLGDLDDISAMIEDISQDHPDRMRIVIALNAGQCPNCDAFGFDLKPRVGMSRNIFCKACDQGFNVAPDPPKAYFVQRIGRRTRA*
Ga0157378_102444803	3300013297	Miscanthus Rhizosphere	LVCRALRCGDLGDISAVIEDISRDHPDRMRIVIALNAERCPDCDAHGFDYKPRVGISRNVFCKACDQGFNVSPDPPKAYFVQRIGRRTRA*
Ga0157378_103128054	3300013297	Miscanthus Rhizosphere	DISAMIEDISQDHPDRMRIVIALNAGQCPDCDAYGFDLKPRVGISRNIFCKACEQGFNVSPDPPKLYFVQRIGRRSRA*
Ga0157378_114284433	3300013297	Miscanthus Rhizosphere	IEDISRDHPDRMRIVIALNAERYPDCDAHGFDYKPRVGISRNVFCKACNRGFNVTPDPPKVYFVQRIGRRPRA*
Ga0163162_102243944	3300013306	Switchgrass Rhizosphere	MIEDISHEHPDRMHIVMELNAGQCPDCDAYGFDLKPRVGMSRNIFCKACDQGFNISPDAPKVYFVQRIGRRRPA*
Ga0163162_106581981	3300013306	Switchgrass Rhizosphere	MIEDISQDHPDRMRVVIALNAEQCPDCGAHGFHHKPRIGMSRNIFCKACDQGFNISPDPPRVFFVQRI
Ga0163162_122764602	3300013306	Switchgrass Rhizosphere	MIEDISQDHPDRMRIVIALNAEQCPDCHAHGFDYKPRVGISRNVFCKACDQGFNVAPDPPKVFFVQRIGRRARA*
Ga0157375_113182441	3300013308	Miscanthus Rhizosphere	MGDISAVIHPDRMRIVIALNAGRCPDCNATVSTSNRGRYQPDIFCKACDQGFNVSPDPPKVHFVQLIGRRPRA*
Ga0157375_125207541	3300013308	Miscanthus Rhizosphere	MRIVIALNGERCPDCDAHGFDYKPRVGITNVFCKACDQGFNVTPDPPKVYFVQRIGRRPRA*
Ga0157379_101700392	3300014968	Switchgrass Rhizosphere	MIEDISQDHPDRMRVVIALNAEQCPDCGAHGFHHKPRIGMSRNIFCKACDQGFNISPDPPRVFFVQRIGRRSRA*
Ga0157379_108848534	3300014968	Switchgrass Rhizosphere	LACFGYGALRFGDLGDISVMIEDIPQDHPDRMRIVMALNAGQCPDCDAYGFDLKPRVGMSRNIFCKACDQGFNISPDAPKVYFVQRIGRRRPA*
Ga0137409_101678053	3300015245	Vadose Zone Soil	ISQNHPDRMRIVIALNAEQCPDCDAHGFDHKPRIGMSRNIFCKACDQGFNISPDPPRVFFVQRIGRRARA*
Ga0132258_105818651	3300015371	Arabidopsis Rhizosphere	MIEDISQDHPDRMRIVIALNAERCPDCDAHGFDYKPRVGISRNVFCKACDQGFNVTPDPPKVYFVQRIGLRPRA*
Ga0132257_1045496421	3300015373	Arabidopsis Rhizosphere	VIEDIPQDHPDHARIVIALNAGQCPDCDAYGFDLKPRVGMSRNIFCKACDQGFNISPDAPKVYFVQRIGRRRPA*
Ga0132255_1009603894	3300015374	Arabidopsis Rhizosphere	MIEDISQDHPDRMRIVIALNAEQCPDCDAHGFDHKPRIGMSRNIFCKACDQGFNISPDPPRVFFVQRIGRRARA*
Ga0132255_1020095541	3300015374	Arabidopsis Rhizosphere	MIEDISQDHPDRMRIVIALNAERCPDCDAHGFDYKPRVGISRNVFCKACDQGFNVTPGPPKVYFVQRIGRRPRA*
Ga0190266_105143052	3300017965	Soil	MIEDISQDHPDRMRIVIALNAGQCPNCDAFGFDLKPRVGMSRNIFCKACDQGLNVAPDPPKAYFVQRISRRTRA
Ga0184624_103097212	3300018073	Groundwater Sediment	MIEDISQDHPDRMRIVIALNAGQCPDCDGYGFDFKPRVGISRNIFCKACDQGFNVAPDPPKVYFVQRIGRRSRA
Ga0184625_106311152	3300018081	Groundwater Sediment	VHLSLRCGDLGDIYAMTEDISQDHPDHMRIVIALNAEQCPDCGAHGFHHKPRIGMSRNIFCKACDQGFNISPDPPKVHFVQRIGRRPRA
Ga0066667_101066823	3300018433	Grasslands Soil	MIEDISQDHPDRMRIVIALNAGQCPDCDGYGFDFTPRVGISRNIFCKPATRASTSRPTHTKVYFVQRIGRRSRA
Ga0190271_126541072	3300018481	Soil	AFACWGVRCLLCDVLGVISAMIEDISQDHPDRMRIVMALNAGQCPDCNAYGFDLKPRVGISRNIFCKVCGQGFNVAPDPPKAHFVQRIGRRSRA
Ga0066669_108095312	3300018482	Grasslands Soil	MIEDISQDHPDRMRIVIALNAGQCPDCDGYGFDFKPRVGISRNIFCKPATRASTSRPTRTKVYFVQRIGRRSRA
Ga0137408_11437672	3300019789	Vadose Zone Soil	MTEDISQDHPDHMRIVNSLNAEQCPDCGAHGFDLKPRIGMSRNIFCKACDQGFNVVPDPPGVFFVQRIGRRARA
Ga0193704_10674372	3300019867	Soil	VVRALGDTSAKTEDISQDHPDHMRIVIALNAEQCPDCGAHGFHHKPRIGMSRNIFCKACDQGFNISPDPPKVHFVQRIGRRP
Ga0222622_101844514	3300022756	Groundwater Sediment	VVRALGDTSAKTEDISQDHPDHMRIVIALNAEQCPDCGAHGFHHKPRIGMSRNIFCKACDQGFNISPDPPKVHFVQRIGRRPRA
Ga0207642_100973632	3300025899	Miscanthus Rhizosphere	MIEDISQDHPDRMRIVIALNAGQCPDCDAYGFDLKPRVGISRNIFCKACEQGFNVSPDPPKLYFVQRIGRRSRA
Ga0207642_104077102	3300025899	Miscanthus Rhizosphere	MIEDISQDHPDRMRIVMALNAGQCPDCDAYGFDLKPRVGMSRNIFCKACDQGFNISPDAPKVYFVQRIGRRRPA
Ga0207680_101118461	3300025903	Switchgrass Rhizosphere	MIEDISQDHPDRMRIVIALNAEQCPDCHAHGFDYKPRVGISRNVFCKACDQGFNVAPDPPKAYFVQRIGRRTRA
Ga0207680_105841612	3300025903	Switchgrass Rhizosphere	VLIKDIPQDHPDYMRIVIALNEGQCPDCDARVLDFKPRAGMSRNIFCKACDQGFNVEPDPPRVLFVQRIGRRSRA
Ga0207681_104914522	3300025923	Switchgrass Rhizosphere	MIEDISQDHPDRMRIVMALNAGQCPDCDAYGFDLKPRVGMSRNIFCKACDQGFNVSPDPPNVHFV
Ga0207687_106164171	3300025927	Miscanthus Rhizosphere	MIEDISQDHPDRMRIVIALNAGQCPNCDAFGFDLKPRVGMSRNIFCKACDQGFNVAPDPPKAYFVQRIGRRTRA
Ga0207701_101770793	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	GDLDDISAMIEDISQDHPDRMRIVIALNAGQCPNCDAFGFDLKPRVGMSRNIFCKACDQGLNVAPDPPKAYFVQRISRRTRA
Ga0207690_104186892	3300025932	Corn Rhizosphere	MIEDISQDHPDRMRIVIALNAEQCPDCHAHGFDYKPRVGISRNIFCKACDQGFNVSPDPPKVHFVQLIGRRPRA
Ga0207706_102540284	3300025933	Corn Rhizosphere	MIEDISQDHPDRMRIVIALNAEQCPDCHAHGFDYKPRVGISRNVFCKACDQGFNVAPDPPKVFFVQRIGRRARA
Ga0207669_104120623	3300025937	Miscanthus Rhizosphere	PDRIRIVIALNAERCPDCDAHGFDYKPRVGISRNVFCKACNRGFNVTPDPPKVYFVQRIGRRPRA
Ga0207704_107326182	3300025938	Miscanthus Rhizosphere	SQDHPDRMRIVIALNAGQCPDCDAYGFDLKPRVGISRNIFCKACEQGFNVSPDPPKLYFVQRIGRRSRA
Ga0207691_107694542	3300025940	Miscanthus Rhizosphere	MIEDIAQDHPDRLRIVIALNAERCPDCDAHGFDYKPRVGISRNVFCKACDQGFNVSPDPPKVHFVQRIGRRPRA
Ga0207689_108099873	3300025942	Miscanthus Rhizosphere	DMGDISAVIHPDHMRIVIALNAGQCPDCNAWFPPQTEVGISRNIFCKACDQGFNVSPDPPKVHFVQLSGRRPRA
Ga0207712_120451041	3300025961	Switchgrass Rhizosphere	MIEDISQDHPDRMRIVVALNAERCPDCDAHGFDYKPRVGISRNVFCKACDQGFNVTPDPPKVYFVQRIGRRPRA
Ga0207677_104016011	3300026023	Miscanthus Rhizosphere	LDDISAMIEDISQDHPDRMRIVIALNAEQCPDCHAHGFDYKPRVGISRNVFCKACVQGFNVAPDPPKVFFVQRIGRRARA
Ga0207678_111495361	3300026067	Corn Rhizosphere	MIEDIAQDHPDRMRIVIALNAERCPDCDAHGFDYKPRVGISRNVFCKACDQGFNVAPDPPKVFFVQRIGRRARA
Ga0207648_119223702	3300026089	Miscanthus Rhizosphere	MIEDIAQDHPDRLRIVIALNAERCPDCDAHGFDYKPRVGISRNVFCKACDQGFNVSPDPPKVHFVQRIGRRPRDVSHS
Ga0207675_1011766242	3300026118	Switchgrass Rhizosphere	LDDISAMIEDISQDHPDRMRIVIALNAEQCPDCHAHGFDYKPRVGISRNVFCKACDQGFNVAPDPPKVFFVQRIGRRARA
Ga0207675_1026411851	3300026118	Switchgrass Rhizosphere	RMRIVMALNAGQCPDCDAYGFDLKPRVGMSRNIFCKACDQGFNISPDAPKVYFVQRIGRRRPA
Ga0207683_113573951	3300026121	Miscanthus Rhizosphere	ACLVYGALRFGDLGAISAMIEDISQDHPDRMRIVMALNAGQCPDCDAYGFDLKPRVGMSRNIFCKACDQGFNISPDAPKVYFVQRIGRRRPA
Ga0209239_10908862	3300026310	Grasslands Soil	GDLGDISAMIEDISQDHPDRMRIVIALNAGQCPDCDGYGFDFKPRVGISRNIFCKACDQGFNVAPDPPKVYFVQRIGRRSRA
Ga0307503_105939842	3300028802	Soil	MIEDISQAHPDRMRIVIALNAERCPDCDAYGLDHKPRIGMSRNIFCKTCDQAFNVAPDPPKVHFVQRIGRRPRA
Ga0307498_100068904	3300031170	Soil	MRIVIALNAEQCPDCGAHGFHHKPRIGMSRNIFCKACDQGFNISPDPPKVHFVQRIGRRPRA
Ga0307499_101686111	3300031184	Soil	QDHPDRMRIVIALNAGQCPNCDAFGFDLKPRVGMSRNIFCKACDQGLNVAPDPPKAYFVQRISRRTRA
Ga0307499_102316622	3300031184	Soil	VVRALGDISAKTEDISQDHPDHMRIVIALNAEQCPDCGAHGFHHKPRIGMSRNIFCKACDQGFNISPDPPKVHFVQRIGRRPRA
Ga0307469_102142533	3300031720	Hardwood Forest Soil	LGYGALRFGDLGDFSVMIEDIPQDHPDRMRIVMALNAGQCPDCDAYGFDLKPRVGMSRNIFCKACDQGFNISPDALKVYFVQRSGRRPCA
Ga0307469_120241912	3300031720	Hardwood Forest Soil	RLVCLPLRLGDLDDISAMIEDISQDHPDRMRIVIALNAGQCPECDAYGFDLKPRVGISRNIFCKACDQGFNVSPDPPKAYFVQRISRRTRA
Ga0307468_1004628311	3300031740	Hardwood Forest Soil	MIEDISQDHPDRMRIVIALNAGQCPDCGAYGFDLKPRVGISRNIFCKACDQGFNVSPDPPKAYFVQRIGRRTRA
Ga0307468_1021829902	3300031740	Hardwood Forest Soil	MRIVIALNAERCPDCDAHGFDYKPRVGISRNIFCKACDQGFNVSPDPPKMHFVQLIGRRPRA
Ga0310906_107335521	3300032013	Soil	MIEDISQDHPDRMRIVIALNAEQCPDCDAHGFDYKPRVGISRNVFCKACDQGFNVSPDPPKAYFVQRIGRRARA
Ga0307471_1026792632	3300032180	Hardwood Forest Soil	GDLDDISAMIEDISQDHPDRMRIVIALNAGQCPNCDAFGFDLKPRVGMSRNIFCKACDQGFNVAPDPPNAYFVQRIGRRTRA
Ga0307472_1005151251	3300032205	Hardwood Forest Soil	MRIVIALNVEQCPDCDAYGFDHKPRIGISRNIFCKACDQGFNVTPDPPRVFFVQRIGCRRPA
Ga0307472_1012417441	3300032205	Hardwood Forest Soil	GDLGDISVMIEDIPQDHPDRMRIVMALNAGQCPDCDAYGFDLKPRVGMSRNIFCKACDQGFNISPDALKVYFVQRSGRRPCA
Ga0314796_188821_286_501	3300034671	Soil	VIEDISQDHPDRMRIVIALNAERCPDCDAHGFDYKPRVGNVFSMACDQGFNVTPGPPKVYFVQRIGRRPRA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F061054

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences