Metagenome / Metatranscriptome Family F061051

Overview

Basic Information

• Family ID: F061051
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 132
• Average Sequence Length: 46 residues
• Representative Sequence: ATGLGSSGRARSYDIIDAKLFALRRCERNSPVPVCTILWCRPGG
• Number of Associated Samples: 118
• Number of Associated Scaffolds: 132

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 0.00 %
• % of genes near scaffold ends (potentially truncated): 92.42 %
• % of genes from short scaffolds (< 2000 bps): 90.91 %
• Associated GOLD sequencing projects: 115
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (94.697 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (18.182 % of family members)
• Environment Ontology (ENVO): Unclassified (31.061 % of family members)
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant rhizosphere (40.152 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 34.72%
  β-sheet: 0.00%
  Coil/Unstructured: 65.28%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 132 Family Scaffolds
PF12804	NTP_transf_3	55.30
PF01381	HTH_3	4.55
PF13478	XdhC_C	3.03
PF07813	LTXXQ	2.27
PF00440	TetR_N	2.27
PF00034	Cytochrom_C	1.52
PF07859	Abhydrolase_3	1.52
PF05988	DUF899	0.76
PF02625	XdhC_CoxI	0.76
PF13561	adh_short_C2	0.76
PF13560	HTH_31	0.76
PF00266	Aminotran_5	0.76
PF01896	DNA_primase_S	0.76
PF06039	Mqo	0.76
PF13533	Biotin_lipoyl_2	0.76
PF13358	DDE_3	0.76

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 132 Family Scaffolds
COG3678	Periplasmic chaperone Spy, Spy/CpxP family	Posttranslational modification, protein turnover, chaperones [O]	9.09
COG0657	Acetyl esterase/lipase	Lipid transport and metabolism [I]	1.52
COG0579	L-2-hydroxyglutarate oxidase LhgO	Carbohydrate transport and metabolism [G]	0.76
COG1975	Molybdoenzyme maturation factor PaoD (Mo cofactor insertion), XdhC/CoxF family	Posttranslational modification, protein turnover, chaperones [O]	0.76
COG4312	Predicted dithiol-disulfide oxidoreductase, DUF899 family	General function prediction only [R]	0.76

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	97.73 %
Unclassified	root	N/A	2.27 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	94.70 %
Viruses	superkingdom	All Organisms → Viruses	3.03 %
Unclassified	root	N/A	2.27 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	94.70 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	3.03 %
Unclassified	root	N/A	2.27 %

Level 4

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	42.42 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	3.03 %
Unclassified	root	N/A	2.27 %

Level 5

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	41.67 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	3.03 %
Unclassified	root	N/A	2.27 %

Level 6

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	18.18 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	14.39 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	3.03 %
Unclassified	root	N/A	2.27 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	1.52 %

Level 7

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	17.42 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	6.06 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	3.03 %
Unclassified	root	N/A	2.27 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1.52 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.76 %

Level 8

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	17.42 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	3.03 %
Unclassified	root	N/A	2.27 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1.52 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.76 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.76 %

Level 9

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	17.42 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	3.03 %
Unclassified	root	N/A	2.27 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1.52 %
Bradyrhizobium canariense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense	0.76 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.76 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300002073|JGI24745J21846_1043018	All Organisms → cellular organisms → Bacteria	562
3300004633|Ga0066395_10455955	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	730
3300005331|Ga0070670_100059747	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3272
3300005332|Ga0066388_101613477	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1142
3300005332|Ga0066388_102175067	All Organisms → cellular organisms → Bacteria	1000
3300005332|Ga0066388_104115735	All Organisms → cellular organisms → Bacteria	741
3300005468|Ga0070707_102229861	All Organisms → cellular organisms → Bacteria	515
3300005544|Ga0070686_100095534	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1997
3300005548|Ga0070665_100749664	All Organisms → cellular organisms → Bacteria	989
3300005554|Ga0066661_10249462	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1099
3300005557|Ga0066704_10214900	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1302
3300005587|Ga0066654_10838920	All Organisms → cellular organisms → Bacteria	524
3300005764|Ga0066903_101057319	All Organisms → cellular organisms → Bacteria	1491
3300005764|Ga0066903_101163711	All Organisms → cellular organisms → Bacteria	1428
3300005764|Ga0066903_103467186	All Organisms → cellular organisms → Bacteria	850
3300005764|Ga0066903_103683910	All Organisms → cellular organisms → Bacteria	824
3300005764|Ga0066903_105508431	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	667
3300006038|Ga0075365_10256431	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1229
3300006042|Ga0075368_10416568	All Organisms → cellular organisms → Bacteria	592
3300006178|Ga0075367_10274920	All Organisms → cellular organisms → Bacteria	1058
3300006603|Ga0074064_10010724	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1340
3300006604|Ga0074060_10010323	All Organisms → cellular organisms → Bacteria	829
3300006604|Ga0074060_11512071	All Organisms → cellular organisms → Bacteria	659
3300006605|Ga0074057_12173275	All Organisms → cellular organisms → Bacteria	814
3300006844|Ga0075428_100673335	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1103
3300006854|Ga0075425_100419818	All Organisms → cellular organisms → Bacteria	1541
3300006854|Ga0075425_102088214	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	633
3300006854|Ga0075425_103138506	All Organisms → cellular organisms → Bacteria	503
3300007788|Ga0099795_10038350	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1691
3300009088|Ga0099830_10694981	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	837
3300009147|Ga0114129_11089144	All Organisms → cellular organisms → Bacteria	1001
3300009162|Ga0075423_10840793	All Organisms → cellular organisms → Bacteria	972
3300009174|Ga0105241_10651174	All Organisms → cellular organisms → Bacteria	957
3300010046|Ga0126384_11571308	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	618
3300010047|Ga0126382_11631150	All Organisms → cellular organisms → Bacteria	599
3300010159|Ga0099796_10255788	All Organisms → cellular organisms → Bacteria	729
3300010333|Ga0134080_10612758	All Organisms → cellular organisms → Bacteria	531
3300010359|Ga0126376_10807120	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	917
3300010360|Ga0126372_10952457	All Organisms → cellular organisms → Bacteria	866
3300010361|Ga0126378_10824362	All Organisms → cellular organisms → Bacteria	1036
3300010361|Ga0126378_10957303	All Organisms → cellular organisms → Bacteria	961
3300010371|Ga0134125_12704202	All Organisms → cellular organisms → Bacteria	539
3300010376|Ga0126381_102055108	All Organisms → cellular organisms → Bacteria	823
3300010396|Ga0134126_12085402	All Organisms → cellular organisms → Bacteria	619
3300011271|Ga0137393_10424707	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1139
3300012199|Ga0137383_10264418	All Organisms → cellular organisms → Bacteria	1260
3300012201|Ga0137365_11356540	All Organisms → cellular organisms → Bacteria	502
3300012204|Ga0137374_10269540	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1415
3300012205|Ga0137362_10624025	All Organisms → cellular organisms → Bacteria	929
3300012206|Ga0137380_10183684	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1901
3300012209|Ga0137379_11427099	All Organisms → cellular organisms → Bacteria	595
3300012210|Ga0137378_10641019	All Organisms → cellular organisms → Bacteria	973
3300012211|Ga0137377_10096233	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2800
3300012350|Ga0137372_10140588	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1981
3300012351|Ga0137386_10279548	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1201
3300012354|Ga0137366_10876436	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	633
3300012355|Ga0137369_10341698	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1096
3300012361|Ga0137360_10712886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	862
3300012362|Ga0137361_10161759	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2008
3300012505|Ga0157339_1066165	All Organisms → cellular organisms → Bacteria	512
3300012532|Ga0137373_10337376	All Organisms → cellular organisms → Bacteria	1187
3300012685|Ga0137397_10872318	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	667
3300012917|Ga0137395_11016834	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	593
3300012987|Ga0164307_10618495	All Organisms → cellular organisms → Bacteria	838
3300013308|Ga0157375_12972164	All Organisms → cellular organisms → Bacteria	566
3300014745|Ga0157377_10853898	All Organisms → cellular organisms → Bacteria	676
3300015077|Ga0173483_10285932	All Organisms → cellular organisms → Bacteria	801
3300015245|Ga0137409_10456738	All Organisms → cellular organisms → Bacteria	1098
3300015374|Ga0132255_102067434	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	868
3300015374|Ga0132255_105794455	All Organisms → cellular organisms → Bacteria	523
3300016294|Ga0182041_10754803	All Organisms → cellular organisms → Bacteria	866
3300016371|Ga0182034_11590382	All Organisms → cellular organisms → Bacteria	574
3300017792|Ga0163161_11811298	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	543
3300018468|Ga0066662_12972488	All Organisms → cellular organisms → Bacteria	504
3300019361|Ga0173482_10156793	All Organisms → cellular organisms → Bacteria	892
3300019885|Ga0193747_1149402	All Organisms → cellular organisms → Bacteria	532
3300019999|Ga0193718_1101988	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	587
3300021363|Ga0193699_10209254	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	810
3300021432|Ga0210384_11303312	All Organisms → cellular organisms → Bacteria	631
3300021444|Ga0213878_10051475	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1608
3300021560|Ga0126371_10437536	All Organisms → cellular organisms → Bacteria	1453
3300022756|Ga0222622_10602238	All Organisms → cellular organisms → Bacteria	793
3300025904|Ga0207647_10224150	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1083
3300025906|Ga0207699_10119628	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1701
3300025910|Ga0207684_11690651	All Organisms → cellular organisms → Bacteria	510
3300025911|Ga0207654_10517992	All Organisms → cellular organisms → Bacteria	844
3300025922|Ga0207646_10335363	All Organisms → cellular organisms → Bacteria	1366
3300025926|Ga0207659_10590355	All Organisms → cellular organisms → Bacteria	946
3300025934|Ga0207686_11286216	All Organisms → cellular organisms → Bacteria	600
3300025981|Ga0207640_11378855	All Organisms → cellular organisms → Bacteria	631
3300026330|Ga0209473_1206869	All Organisms → cellular organisms → Bacteria	737
3300026547|Ga0209156_10062087	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1941
3300027633|Ga0208988_1047158	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense	1101
3300027671|Ga0209588_1037382	All Organisms → cellular organisms → Bacteria	1563
3300027874|Ga0209465_10154010	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1142
3300027874|Ga0209465_10580728	All Organisms → cellular organisms → Bacteria	556
3300027884|Ga0209275_10698547	Not Available	584
3300027903|Ga0209488_10156559	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1721
3300028047|Ga0209526_10008993	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6885
3300028768|Ga0307280_10012205	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2355
3300028803|Ga0307281_10302365	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	597
3300028824|Ga0307310_10285544	All Organisms → cellular organisms → Bacteria	800
3300028828|Ga0307312_10385201	All Organisms → cellular organisms → Bacteria	919
3300031152|Ga0307501_10016531	All Organisms → cellular organisms → Bacteria	1336
3300031200|Ga0307496_10060180	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	663
3300031543|Ga0318516_10145267	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1361
3300031679|Ga0318561_10068926	All Organisms → Viruses → Predicted Viral	1808
3300031719|Ga0306917_10621571	All Organisms → cellular organisms → Bacteria	849
3300031747|Ga0318502_10025774	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2909
3300031748|Ga0318492_10018335	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3002
3300031751|Ga0318494_10405036	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	791
3300031764|Ga0318535_10011836	All Organisms → Viruses → Predicted Viral	3140
3300031779|Ga0318566_10505953	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	591
3300031795|Ga0318557_10551939	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	529
3300031797|Ga0318550_10026128	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2475
3300031799|Ga0318565_10039974	All Organisms → cellular organisms → Bacteria	2150
3300031805|Ga0318497_10063724	Not Available	1924
3300031860|Ga0318495_10026762	All Organisms → Viruses → Predicted Viral	2501
3300031943|Ga0310885_10913702	All Organisms → cellular organisms → Bacteria	503
3300032009|Ga0318563_10326179	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	831
3300032042|Ga0318545_10137337	All Organisms → cellular organisms → Bacteria → Proteobacteria	866
3300032054|Ga0318570_10399099	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	627
3300032066|Ga0318514_10052456	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1977
3300032068|Ga0318553_10107841	All Organisms → cellular organisms → Bacteria	1424
3300032068|Ga0318553_10431132	All Organisms → cellular organisms → Bacteria	690
3300032089|Ga0318525_10064165	All Organisms → Viruses → Predicted Viral	1838
3300032122|Ga0310895_10237488	All Organisms → cellular organisms → Bacteria	836
3300032180|Ga0307471_101716439	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	781
3300032180|Ga0307471_101993312	All Organisms → cellular organisms → Bacteria	728
3300032205|Ga0307472_101335777	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	692
3300032770|Ga0335085_11207728	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	803

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	81.82%
Host-Associated	Host-Associated	18.18%

Class

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	81.06%
Plants	Host-Associated → Plants	18.18%
Aquatic	Environmental → Aquatic	0.76%

Category

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	81.06%
Rhizosphere	Host-Associated → Plants → Rhizosphere	10.61%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.30%
Roots	Host-Associated → Plants → Roots	2.27%
Sediment	Environmental → Aquatic → Sediment	0.76%

Type

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	65.91%
Loam	Environmental → Terrestrial → Soil → Loam	14.39%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.33%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.79%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	2.27%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.27%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.52%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.76%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.76%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	39.39%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	19.70%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.61%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.33%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.30%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.79%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	2.27%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.27%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.52%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.52%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.76%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.76%

Habitat

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	18.18%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	15.15%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.09%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	8.33%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.06%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.55%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.03%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.03%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.27%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.27%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	2.27%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.52%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.52%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.52%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.52%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.52%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.52%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.52%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.76%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.76%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.76%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.76%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.76%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.76%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.76%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.76%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.76%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.76%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.76%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.76%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300002073	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4	Host-Associated
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated
3300006042	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3	Host-Associated
3300006178	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2	Host-Associated
3300006603	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMC (Metagenome Metatranscriptome)	Environmental
3300006604	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMB (Metagenome Metatranscriptome)	Environmental
3300006605	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAB (Metagenome Metatranscriptome)	Environmental
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental
3300012505	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.10.yng.090610	Host-Associated
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental
3300015374	Col-0 rhizosphere combined assembly	Host-Associated
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental
3300019885	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2	Environmental
3300019999	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a1	Environmental
3300021363	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2	Environmental
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental
3300021444	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R02	Environmental
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated
3300026327	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)	Environmental
3300026330	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)	Environmental
3300026547	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)	Environmental
3300027633	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M1 (SPAdes)	Environmental
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental
3300028803	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120	Environmental
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental
3300031152	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 15_S	Environmental
3300031200	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 9_S	Environmental
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI24745J21846_10430182	3300002073	Corn, Switchgrass And Miscanthus Rhizosphere	CRAAGLGSGGWARSVNVVDAKIWALRRCERGSPVPVCTILWCRPGG*
Ga0066395_104559551	3300004633	Tropical Forest Soil	SLVTSEASAYVCFATGVGSSGGGRSYSIIDAKLIALRRCEHHSPVPICTILWCRPGY*
Ga0070670_1000597475	3300005331	Switchgrass Rhizosphere	VCRAVGIGSGGYGRSFSVIDAKLIALRRCENYSPIPVCTILWCRPGG*
Ga0066388_1016134771	3300005332	Tropical Forest Soil	WVCRATGVGSGGWARSGSIIDAKFMALRRCERHSPVPVCTVVYCRPGW*
Ga0066388_1021750671	3300005332	Tropical Forest Soil	LASSEASAWVCYATGLGSGGFARAYDIIDAKLFALRRCERNSPVPVCTLLWCRPGR*
Ga0066388_1041157352	3300005332	Tropical Forest Soil	SSEASAWVCHATGLGSGASARSYSIIDAKLWALRRCERGSPLPVCTILWCRPGG*
Ga0070707_1022298612	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	ASAWVCRAAGLGSGGWARSVNVVDAKIWALRRCERGSPVPVCTILWCRPGG*
Ga0070686_1000955341	3300005544	Switchgrass Rhizosphere	AGLGSGGWARSVSVVDAKIWALRRCERNSPVPVCTILWCRPGG*
Ga0070665_1007496642	3300005548	Switchgrass Rhizosphere	ASSEASAWVCRAAGLGSGGWARSVNVVDAKIWALRRCERGSPVPVCTILWCRPGG*
Ga0066661_102494621	3300005554	Soil	MGASYSIVDAKLWALRRCEHYSPLPVCTILWCRPGG*
Ga0066704_102149002	3300005557	Soil	ASSEASAWVCRAAGLGSGGWGRSYSIVDAKLWALRRCEHYSPLPVCTILWCRPGG*
Ga0066654_108389202	3300005587	Soil	LGSGGYGRSYDIIDAKLFALRRCERNSPAPVCTILWCRPGG*
Ga0066903_1010573191	3300005764	Tropical Forest Soil	MASSEASAWVCQATGVGSGGWARSYSIIDAKLGALRRCEHHSPVPICTIVWCRPGF*
Ga0066903_1011637112	3300005764	Tropical Forest Soil	GLGSSGTARAYDIIDAKLFALRRCERNSPVPVCTLLWCRPGR*
Ga0066903_1034671862	3300005764	Tropical Forest Soil	GGWARSGSIIDAKFMALRRCERHSPVPVCTVVYCRPGW*
Ga0066903_1036839101	3300005764	Tropical Forest Soil	QASAWACFATGLGSSGFARAYDIIDAKLFALRQCERNSPAPVCVILWCRPRG*
Ga0066903_1055084312	3300005764	Tropical Forest Soil	IVSMASSEASAWVCQAAGVGSGGWARSYSIIDAKLGALRRCEHHSPVPICTIVWCRPDF*
Ga0075365_102564312	3300006038	Populus Endosphere	SARSYSIIDAKLWALRRCERGSPLPVCTILWCRPGG*
Ga0075368_104165681	3300006042	Populus Endosphere	WARSYNVVDAKIWALRRCERNSPVPVCTILWCRPGG*
Ga0075367_102749201	3300006178	Populus Endosphere	WARSYNVVDAKIWALRRCERGSPVPVCTILWCRPGG*
Ga0074064_100107242	3300006603	Soil	SEASAWVCRAAGLGSGGWARSFNVVDAKIWALRRCERNSPVPVCTILWCRPGG*
Ga0074060_100103231	3300006604	Soil	SAWVCRAAGLGSGGWARSVNVVDAKIWALRRCERGSPVPVCTILWCRPGG*
Ga0074060_115120711	3300006604	Soil	ASSEASAWVCRAAGLGSGGWARSFNVVDAKIWALRRCERNSPVPVCTILWCRPGG*
Ga0074057_121732751	3300006605	Soil	GVGSGGWARSYSVIDAKFMALRRCEHHSPVPVCTILWCRPGG*
Ga0075428_1006733351	3300006844	Populus Rhizosphere	CVLKASSESSAWVCRAVGIGSGGYGRSFSVIDAKLIIALRRCENYSPIPVCTILCCRPGG
Ga0075425_1004198182	3300006854	Populus Rhizosphere	YGRSYDIIDAKLFALRRCERNSPVPVCTILWCRPGG*
Ga0075425_1020882142	3300006854	Populus Rhizosphere	SAWVCRAVGIGSGGYGRSFSVIDAKLIIALRRCENYSPIPVCTILCCRPGG*
Ga0075425_1031385061	3300006854	Populus Rhizosphere	WGSWGWARSFSIERAKFVALRRCERGSALHVCTISWCRP*
Ga0099795_100383506	3300007788	Vadose Zone Soil	SEASAWVCRAVGVGSGGMGRSATVADAKFQALRRCEHRGPVPVCTILWCRPGG*
Ga0099830_106949814	3300009088	Vadose Zone Soil	AWVCFATGLGSGGWGRSYDIIDAKLFALRRCERNSPLPVCTILWCRPGG*
Ga0114129_110891442	3300009147	Populus Rhizosphere	WVCLATGLGSGGYGRSYDIIDAKLFALRRCERNSPVPICTILWCRPGG*
Ga0075423_108407932	3300009162	Populus Rhizosphere	MSAATSEASAWVCRATGLYSGGFARSANIIDAKLFALRRCERNSPIPVCTLTWCRPGY*
Ga0105241_106511742	3300009174	Corn Rhizosphere	GSGGWARSVNVVDAKIWALRRCERGSPVPVCTILWCRPGG*
Ga0126384_115713082	3300010046	Tropical Forest Soil	GVGSGGWARAYSVIDAKLIALLRCEHHSLVPICTILWCRPGY*
Ga0126382_116311501	3300010047	Tropical Forest Soil	RAYDIIDAKLFALRRCERNSPVPVCTLLWCRPGR*
Ga0099796_102557882	3300010159	Vadose Zone Soil	GSGGWGRGYSIIDAKLWALRSCERHSAVPVCTLIWCRPGR*
Ga0134080_106127582	3300010333	Grasslands Soil	GFARAYDIIDAKLFALRRCERNSSVPVCTLLWCRPGR*
Ga0126376_108071203	3300010359	Tropical Forest Soil	AGVGSGGWARNYSIIDAKLMALRRCEHHSPVPVCTILWCRPGY*
Ga0126372_109524571	3300010360	Tropical Forest Soil	WVCFATGLGSGGYGRSYDIIDAKLFALRRCERNSPVPVCTILWCRPGG*
Ga0126378_108243623	3300010361	Tropical Forest Soil	TVASSEASAWVCFATGLGSSGTARAYDIIDAKLFALRRCERNSPVPVCTLVWCRPGR*
Ga0126378_109573032	3300010361	Tropical Forest Soil	ARSYDIIDAKLFALRRCERNSPVPVCTLLWCRPGG*
Ga0134125_127042021	3300010371	Terrestrial Soil	GLGSGGWARSYNVVDAKIWALRRCERGSPVPVCTILWCRPGG*
Ga0126381_1020551082	3300010376	Tropical Forest Soil	TVASSEASAWVCFATGLGSSGTARAYDIIDAKLFALRRCERDSPVPVCTLVWCRPGR*
Ga0134126_120854021	3300010396	Terrestrial Soil	SEASAWVCFATGLGSGGYGRSYDVIDAKLFALRRCERNSPVPICTILWCRPGG*
Ga0137393_104247073	3300011271	Vadose Zone Soil	GGWGRSYDIIDAKLFALRRCERNSPLPVCTILWCRPGG*
Ga0137383_102644182	3300012199	Vadose Zone Soil	MASSEASAWVCYATGLGSGGFARAYDIIDAKLFALRRCERNSPVPVCTLLWCRPGR*
Ga0137365_113565402	3300012201	Vadose Zone Soil	EASAWVCYATGLGSSGAARAYDIIDAKLFALRRCERNSPLPICTILWCRPGR*
Ga0137374_102695402	3300012204	Vadose Zone Soil	MASSEASAWVCYATGLGSGGFARAYDIIDAKLFALRRCERNSPLPVCTLLWCRPGR*
Ga0137362_106240251	3300012205	Vadose Zone Soil	MASSEASAWVCYATGLGSSGFARAYDIIDAKLFALRRCERNSPLPVCTLLWCRPGR*
Ga0137380_101836842	3300012206	Vadose Zone Soil	MATSEASAWVCYATGLGSGGFARAYDIIDAKLFALRRCERNSSVPVCTLLWCRPGR*
Ga0137379_114270992	3300012209	Vadose Zone Soil	GSGTYDIIDAKLFALRRCERNSPVPVCTLLWCRPGH*
Ga0137378_106410192	3300012210	Vadose Zone Soil	ARAYDIIDAKLFALRRCERNSPVPVCTLLWCRPGR*
Ga0137377_100962334	3300012211	Vadose Zone Soil	FARAYDIIDAKLFALRRCERNSPVPVCTLLWCRPGR*
Ga0137372_101405881	3300012350	Vadose Zone Soil	ARAYDIIDAKLFALRRCERNSPLPVCTLLWCRPGR*
Ga0137386_102795482	3300012351	Vadose Zone Soil	MATSEASAWVCYATGLGSGGFARAYDIIDAKLFALRRCERNSPVPVCTLLWCRPGR*
Ga0137366_108764362	3300012354	Vadose Zone Soil	MATSEASAWVCYATGLGSGGIARAYDIIDAKLFALRRCERNSSVPVCTLLWCRPGR
Ga0137369_103416982	3300012355	Vadose Zone Soil	GFARAYDIIDAKLFALRRCERNSPLPVCTLLWCRPGR*
Ga0137360_107128862	3300012361	Vadose Zone Soil	MASSEASAWVCYATGLGSSGFARAYDIIDAKLFALRRCERNSPLPVCTLL
Ga0137361_101617591	3300012362	Vadose Zone Soil	AWVCYATGLGSGGFARAYDIIDAKLFALRRCERNSPLPVCTILWCRPGR*
Ga0157339_10661651	3300012505	Arabidopsis Rhizosphere	ATGLGSGASARSYSIIDAKLWALRRCERGSPLPVCTILWCRPGG*
Ga0137373_103373761	3300012532	Vadose Zone Soil	MATSEASAWVCYATGLGSGGFARAYDIIDAKLFALRRCERNSPVPVCTLFWCRPGR*
Ga0137397_108723182	3300012685	Vadose Zone Soil	EASAWVCRAAGLGSGGLGRSYSIIDAKLLALRRCEHYSPLPVCTILWCRPGG*
Ga0137395_110168341	3300012917	Vadose Zone Soil	MASSEASAWVCRAAGLGSGGLGRSYSIIDAKLLALRRCEHYSPLPVCTILWCRPG
Ga0164307_106184951	3300012987	Soil	RSYNVVDAKIWALRRCERNSPVPVCTILWCRPGG*
Ga0157375_129721641	3300013308	Miscanthus Rhizosphere	ASAWVCRAAGLVSGGWARSVSVVDAKIWALRRCERNSPVPVCTILWCRPGG*
Ga0157377_108538982	3300014745	Miscanthus Rhizosphere	EASAWVCRAAGLGSGGWARSVNVVDAKIWALRRCERGSPVPVCTILWCRPGG*
Ga0173483_102859321	3300015077	Soil	GWARSVNVVDAKIWALRRCERGSPVPVCTILWCRPGG*
Ga0137409_104567381	3300015245	Vadose Zone Soil	ARSYSIIDAKLLALRRCERHSPVPVCTLLWCRPY*
Ga0132255_1020674341	3300015374	Arabidopsis Rhizosphere	GWARSYSIIDAKLMALRRCEHHSPVPVCTILWCRPGF*
Ga0132255_1057944552	3300015374	Arabidopsis Rhizosphere	RSVSVVDAKIWVLRRCERNSPVPVCTILWCRPGG*
Ga0182041_107548031	3300016294	Soil	ARAYDIIDAKLFALRRCERNSPVPLCTLVWCRPGR
Ga0182034_115903822	3300016371	Soil	LGSSGRARSYDIIDAKLFALRRCERNSPVPVCTLLWCRPGG
Ga0163161_118112981	3300017792	Switchgrass Rhizosphere	SSEASAWVCRAVGIGSGGYGRSFSVIDAKLIALRRCENYSPIPVCTILWCRPGG
Ga0066662_129724882	3300018468	Grasslands Soil	EASAWVCLATGLGSGGYGRSYDIIDAKLFALRRCERNSPVPICTILWCRPGG
Ga0173482_101567932	3300019361	Soil	GLGSGGWARSYNVVDAKIWALRRCERGSPVPVCTILWCRPGG
Ga0193747_11494022	3300019885	Soil	SAWVCFATGLGSGGYGRSYDVIDAKLFALRRCERNSPVPICTILWCRPGG
Ga0193718_11019881	3300019999	Soil	RAVGLSSGGYGRNFSVIDAKLIALRRCENYSPIPVCTILWCRPDG
Ga0193699_102092542	3300021363	Soil	VCRAVGLGSGGWGRSYSVIDAKLIALRRCENYSPLPVCTILWCRPGG
Ga0210384_113033121	3300021432	Soil	ASSEASAWVCFATGLGSGGYGRHYDIIDAKLFALRRCERNSPVPICTILWCRPGG
Ga0213878_100514752	3300021444	Bulk Soil	CFATGLGSSGRARSYDIIDAKLFALRRCERNSPVPICTLLWCRPGG
Ga0126371_104375362	3300021560	Tropical Forest Soil	ATGLGSGGYARAYDIIDAKLFALRRCERGSPVPVCTLLWCRPGR
Ga0222622_106022382	3300022756	Groundwater Sediment	VGLGSCGYGRSFSVIDAKLIALRRCENYSPIPVCTILWCRPGG
Ga0207647_102241501	3300025904	Corn Rhizosphere	GSGGYGRSFSVIDAKLIALRRCENYSPIPVCTILWCRPGG
Ga0207699_101196282	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	ASSEASAWVCLATGLGSGGYGRSYDIIDAKLFALRRCERNSPVPICTILWCRPGG
Ga0207684_116906511	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	GSSGRARSYDIIDAKLFALRRCERNSPVPICTLLWCRPGG
Ga0207654_105179921	3300025911	Corn Rhizosphere	GGWARSYNVVDAKIGALRRCERGSPVPVCTILWCRPGG
Ga0207646_103353631	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	SGRARSYDIIDAKLFALRRCERNSPVPICTLLWCRPGG
Ga0207659_105903552	3300025926	Miscanthus Rhizosphere	GASSEASAWVCRAAGLGSGGWARSVNVVDAKIWALRRCERGSPVPVCTILWCRPGG
Ga0207686_112862161	3300025934	Miscanthus Rhizosphere	GGWARSVNVVDAKIWALRRCERGSPVPVCTILWCRPGG
Ga0207640_113788551	3300025981	Corn Rhizosphere	EASAWVCRAAGLGSGGWARSVNVVDAKIWALRRCERGSPVPVCTILWCRPGG
Ga0209266_11703392	3300026327	Soil	MGRILASLVVGGWGRSYSIIDAKLWALRRCEHYSPLPICTILWCRPGG
Ga0209473_12068692	3300026330	Soil	SGGYGRSYDIIDAKLFALRRCERNSPVPVCTILWCRPGG
Ga0209156_100620873	3300026547	Soil	YGRSYDIIDAKLFALRRCERNSPVPVCTILWCRPGG
Ga0208988_10471581	3300027633	Forest Soil	GWGRSYSVIDAKLIALRRCENYSPLPVCTILWCRPGG
Ga0209588_10373821	3300027671	Vadose Zone Soil	SAWVCFATGLGSSGRARSYDIIDAKLFALRRCERNSPVPICTLLWCRPGG
Ga0209465_101540101	3300027874	Tropical Forest Soil	SLVTSEASAYVCFATGVGSSGGGRSYSIIDAKLIALRRCEHHSPVPICTILWCRPGY
Ga0209465_105807281	3300027874	Tropical Forest Soil	SAWVCFATGLGSGGYGRSYDIIDAKLFALRRCERNSPVPVCTILWCRPGG
Ga0209275_106985472	3300027884	Soil	ARSYDIIDAKLFALRRCERNSPVPVCTLLWCRPGG
Ga0209488_101565595	3300027903	Vadose Zone Soil	SGGMGRSATVAGAKFQALRRCEHRGPVPVCTILWCRPGG
Ga0209526_100089931	3300028047	Forest Soil	ARSYDIIDAKLFALRRCERNSPVPICTLLWCRPGG
Ga0307280_100122053	3300028768	Soil	GLGSGGWARSVSVVDAKIWALRRCERNSPVPVCTILWCRPGG
Ga0307281_103023651	3300028803	Soil	ASSEASAWVCRAVGIGSGGYGRSFSVIDAKLIALRRCENYSPIPVCTILWCRPGG
Ga0307310_102855442	3300028824	Soil	SAWVCRAVGIGSGGYGRSFSVIDAKLIALRRCENYSPIPVCTILWCRPGG
Ga0307312_103852012	3300028828	Soil	TGLGSGGYGRSYDVIDAKLFALRRCERNSPVPICTILWCRPGG
Ga0307501_100165311	3300031152	Soil	LGSGGWARNVSVVDAKIWALRRCERNSPVPVCTILWCRPGG
Ga0307496_100601801	3300031200	Soil	VGLGSGGYGRSFSVIDAKLIALRRCENYSPIPVCTILWCRPGG
Ga0318516_101452672	3300031543	Soil	SEASAWVCYASGLGTRGYARAYDIIDAKLFALRRCERYSPVPVCILVWCRPGG
Ga0318561_100689261	3300031679	Soil	RARSYDIIDAKLFALRRCERNSPVPVCTILWCRPGG
Ga0306917_106215712	3300031719	Soil	ATGLGSSGFARAYDIIDAKLFALRRCERNSPVPVCTLLWCRPGR
Ga0318502_100257741	3300031747	Soil	EASAWVCYATGLGSGGYARAYDIIDAKLFALRRCERGSPVPVCTLLWCRPGR
Ga0318492_100183354	3300031748	Soil	GGYARAYDIIDAKLFALRLCERGSPVPVCTLLWCRPGR
Ga0318494_104050361	3300031751	Soil	FATGLGSSGRARSYDIIDAKLFALRRCERNSPVPVCTILWCRPGG
Ga0318535_100118361	3300031764	Soil	AASSEASAWVCFATGLGSSGRARSYDIIDAKLFALRRCERNSPVPVCTILWCRPGG
Ga0318566_105059531	3300031779	Soil	SSEASAWVCFATGLGSSGRARSYDIIDAKLFALRRCERNSPVPVCTILWCRPGG
Ga0318557_105519392	3300031795	Soil	LTLTTSEASAWVCYATGLGTRGYARAYDIIDAKLFALRRCERYSPVPVCILVWCRPGG
Ga0318550_100261281	3300031797	Soil	YATGLGSGGYARAYDIIDAKLFALRRCERGSPVPVCTLLWCHPGR
Ga0318565_100399741	3300031799	Soil	TGLGSSGRARSYDIIDAKLFALRRCERNSPVPVCTILWCRPGG
Ga0318497_100637241	3300031805	Soil	ARSYDIIDAKLFALRRCERNSPVPVCTILWCRPGG
Ga0318495_100267621	3300031860	Soil	LAAASSEASAWVCFATGLGSSGRARSYDIIDAKLFALRRCERNSPVPVCTILWCRPGG
Ga0310885_109137021	3300031943	Soil	SAWVCRAAGLGSGGWARSVNVVDAKIWALRRCERGSPVPVCTILWCRPGG
Ga0318563_103261791	3300032009	Soil	SGRARSYDIIDAKLFALRRCERNSPVPVCTILWCRPGG
Ga0318545_101373371	3300032042	Soil	LQEIEDAVGPGGWGRNYSIIDAKLSALRRCERNSPLPVCTIVWCRPGP
Ga0318570_103990991	3300032054	Soil	VCYATGLGTRGYARAYDIIDAKLFALRRCERYSPVPVCILVWCRPGG
Ga0318514_100524561	3300032066	Soil	ASSEASAWVCFATGLGSSGRARSYDIIDAKLFALRRCERNSPVPVCTILWCRPGG
Ga0318553_101078411	3300032068	Soil	SEASAWVCFATGLGSSGTARAYDIIDAKLFALRRCERNSPVPVCTLVWCRPGR
Ga0318553_104311322	3300032068	Soil	ASSEASAWVCFATGLGSSGRARSYDIIDAKLFALRRCERNSPVPVCTLLWCRPGG
Ga0318525_100641651	3300032089	Soil	ATGLGSSGRARSYDIIDAKLFALRRCERNSPVPVCTILWCRPGG
Ga0310895_102374882	3300032122	Soil	SGGWARSYNVVDAKIWALRRCERNSPVPVCTILWCRPGG
Ga0307471_1017164391	3300032180	Hardwood Forest Soil	LSLATSEASAAWVCQAAGVGSGGWAHSYSIIDAKLIALRRCEHHSPVPMCTILWCRPGY
Ga0307471_1019933122	3300032180	Hardwood Forest Soil	TGLGSSGRARSYDIIDAKLFALRRCERNSPVPICTLLWCRPGG
Ga0307472_1013357771	3300032205	Hardwood Forest Soil	WAHSYSIIDAKLIALRRCEHHSPVPMCTILWCRPGY
Ga0335085_112077281	3300032770	Soil	YVCHATGLGSGGWARSYSIIDAKLIALRRCEHHSPVPVCTILWCRPGY