Metagenome Family F060999

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F060999
Family Type	Metagenome
Number of Sequences	132
Average Sequence Length	99 residues
Representative Sequence	VLARVAARHFPFSAFVAGTFLFGWLLGLAVVLKLWHLAQAPRWMILSGVGYVTLMLPPTISGFTLAWCAGRLSARGWGPVALGAAGAGVAGLVAGLLVL
Number of Associated Samples	108
Number of Associated Scaffolds	132

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	16.67 %
% of genes near scaffold ends (potentially truncated)	43.18 %
% of genes from short scaffolds (< 2000 bps)	78.03 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (53.030 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere (12.121 % of family members)
Environment Ontology (ENVO)	Unclassified (37.879 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (59.091 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 70.87% β-sheet: 0.00% Coil/Unstructured: 29.13%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 132 Family Scaffolds
PF00994	MoCF_biosynth	31.06
PF08281	Sigma70_r4_2	14.39
PF04542	Sigma70_r2	10.61
PF04545	Sigma70_r4	2.27
PF04055	Radical_SAM	2.27
PF06463	Mob_synth_C	2.27
PF01546	Peptidase_M20	1.52
PF00092	VWA	0.76
PF07879	PHB_acc_N	0.76
PF07687	M20_dimer	0.76

COG ID	Name	Functional Category	% Frequency in 132 Family Scaffolds
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	10.61
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	10.61
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	10.61
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	10.61
COG2896	GTP 3',8-cyclase (molybdenum cofactor biosynthesis protein MoaA)	Coenzyme transport and metabolism [H]	2.27
COG5394	Polyhydroxyalkanoate (PHA) synthesis regulator protein, binds DNA and PHA	Signal transduction mechanisms [T]	0.76

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	53.79 %
Unclassified	root	N/A	46.21 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	53.79 %
Unclassified	root	N/A	46.21 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	53.03 %
Unclassified	root	N/A	46.21 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.21 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	30.30 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2.27 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	1.52 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.21 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	20.45 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	1.52 %
Deinococcus-Thermus	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus	1.52 %
Stenosarchaea group	clade	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group	0.76 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.21 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	20.45 %
Deinococci	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci	1.52 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1.52 %
Halobacteria	class	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	0.76 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.21 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	9.09 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	3.79 %
Deinococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales	1.52 %
Bacteroidetes Order II. Incertae sedis	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidetes Order II. Incertae sedis	0.76 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.76 %
Halobacteriales	order	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.21 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3.79 %
Deinococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae	1.52 %
Haloarculaceae	family	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Haloarculaceae	0.76 %
Rhodothermaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidetes Order II. Incertae sedis → Rhodothermaceae	0.76 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.76 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.21 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3.79 %
Deinococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus	1.52 %
Myxococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae	0.76 %
unclassified Rhodothermaceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidetes Order II. Incertae sedis → Rhodothermaceae → unclassified Rhodothermaceae	0.76 %
Haloarcula	genus	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Haloarculaceae → Haloarcula	0.76 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.21 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3.79 %
Deinococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus	1.52 %
unclassified Myxococcaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae	0.76 %
Rhodothermaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidetes Order II. Incertae sedis → Rhodothermaceae → unclassified Rhodothermaceae → Rhodothermaceae bacterium	0.76 %
Haloarcula amylolytica	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Haloarculaceae → Haloarcula → Haloarcula amylolytica	0.76 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.21 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3.79 %
Deinococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus	1.52 %
Myxococcaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	0.76 %
Rhodothermaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidetes Order II. Incertae sedis → Rhodothermaceae → unclassified Rhodothermaceae → Rhodothermaceae bacterium	0.76 %
Haloarcula amylolytica	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Haloarculaceae → Haloarcula → Haloarcula amylolytica	0.76 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.76 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004156\|Ga0062589_100181811	All Organisms → cellular organisms → Bacteria	1491	Open in IMG/M
3300004156\|Ga0062589_100593956	All Organisms → cellular organisms → Bacteria → Proteobacteria	959	Open in IMG/M
3300004463\|Ga0063356_100215884	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	2282	Open in IMG/M
3300004463\|Ga0063356_101085278	Not Available	1152	Open in IMG/M
3300004463\|Ga0063356_102830366	All Organisms → cellular organisms → Bacteria → Proteobacteria	747	Open in IMG/M
3300004480\|Ga0062592_101213759	Not Available	706	Open in IMG/M
3300004480\|Ga0062592_101487877	Not Available	649	Open in IMG/M
3300004633\|Ga0066395_10001639	All Organisms → cellular organisms → Bacteria	7791	Open in IMG/M
3300004633\|Ga0066395_10353500	All Organisms → cellular organisms → Bacteria	817	Open in IMG/M
3300004643\|Ga0062591_101222309	Not Available	733	Open in IMG/M
3300004643\|Ga0062591_101593342	All Organisms → cellular organisms → Bacteria → Proteobacteria	657	Open in IMG/M
3300005093\|Ga0062594_100868447	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	846	Open in IMG/M
3300005093\|Ga0062594_102114712	Not Available	606	Open in IMG/M
3300005184\|Ga0066671_10266074	All Organisms → cellular organisms → Bacteria → Proteobacteria	1062	Open in IMG/M
3300005328\|Ga0070676_10119427	All Organisms → cellular organisms → Bacteria → Proteobacteria	1652	Open in IMG/M
3300005329\|Ga0070683_100025540	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	5306	Open in IMG/M
3300005329\|Ga0070683_100330424	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1451	Open in IMG/M
3300005329\|Ga0070683_100821863	All Organisms → cellular organisms → Bacteria	891	Open in IMG/M
3300005330\|Ga0070690_100086446	All Organisms → cellular organisms → Bacteria	2059	Open in IMG/M
3300005331\|Ga0070670_100055523	All Organisms → cellular organisms → Bacteria	3400	Open in IMG/M
3300005332\|Ga0066388_104226261	Not Available	732	Open in IMG/M
3300005335\|Ga0070666_10121007	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1815	Open in IMG/M
3300005337\|Ga0070682_101115988	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus	661	Open in IMG/M
3300005338\|Ga0068868_100660071	All Organisms → cellular organisms → Bacteria → Proteobacteria	932	Open in IMG/M
3300005340\|Ga0070689_100358431	All Organisms → cellular organisms → Bacteria	1225	Open in IMG/M
3300005364\|Ga0070673_100017079	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	5149	Open in IMG/M
3300005364\|Ga0070673_100788128	Not Available	877	Open in IMG/M
3300005366\|Ga0070659_101561918	All Organisms → cellular organisms → Bacteria → Proteobacteria	589	Open in IMG/M
3300005437\|Ga0070710_11312490	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Haloarculaceae → Haloarcula → Haloarcula amylolytica	538	Open in IMG/M
3300005441\|Ga0070700_100449735	Not Available	980	Open in IMG/M
3300005444\|Ga0070694_101673651	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300005451\|Ga0066681_10132073	All Organisms → cellular organisms → Bacteria	1455	Open in IMG/M
3300005456\|Ga0070678_100046755	All Organisms → cellular organisms → Bacteria	3106	Open in IMG/M
3300005456\|Ga0070678_102004157	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300005458\|Ga0070681_10126288	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	2491	Open in IMG/M
3300005466\|Ga0070685_10421530	All Organisms → cellular organisms → Bacteria → Proteobacteria	929	Open in IMG/M
3300005526\|Ga0073909_10140188	All Organisms → cellular organisms → Bacteria → Proteobacteria	998	Open in IMG/M
3300005535\|Ga0070684_100292733	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1493	Open in IMG/M
3300005543\|Ga0070672_100764084	All Organisms → cellular organisms → Bacteria → Proteobacteria	849	Open in IMG/M
3300005544\|Ga0070686_101590041	Not Available	553	Open in IMG/M
3300005548\|Ga0070665_102172131	Not Available	559	Open in IMG/M
3300005563\|Ga0068855_101883918	All Organisms → cellular organisms → Bacteria → Proteobacteria	606	Open in IMG/M
3300005614\|Ga0068856_101385781	Not Available	718	Open in IMG/M
3300005616\|Ga0068852_100764482	All Organisms → cellular organisms → Bacteria → Proteobacteria	979	Open in IMG/M
3300005618\|Ga0068864_100627270	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidetes Order II. Incertae sedis → Rhodothermaceae → unclassified Rhodothermaceae → Rhodothermaceae bacterium	1045	Open in IMG/M
3300005842\|Ga0068858_100738698	All Organisms → cellular organisms → Bacteria	959	Open in IMG/M
3300006237\|Ga0097621_100415883	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus	1206	Open in IMG/M
3300006358\|Ga0068871_100827020	All Organisms → cellular organisms → Bacteria	855	Open in IMG/M
3300006853\|Ga0075420_101021805	All Organisms → cellular organisms → Bacteria	711	Open in IMG/M
3300006854\|Ga0075425_101888979	Not Available	669	Open in IMG/M
3300006871\|Ga0075434_102025355	Not Available	581	Open in IMG/M
3300009156\|Ga0111538_11951513	Not Available	738	Open in IMG/M
3300009176\|Ga0105242_12614720	Not Available	554	Open in IMG/M
3300009678\|Ga0105252_10098853	Not Available	1169	Open in IMG/M
3300010362\|Ga0126377_10801847	Not Available	1000	Open in IMG/M
3300010397\|Ga0134124_11338704	Not Available	740	Open in IMG/M
3300010398\|Ga0126383_13118862	Not Available	541	Open in IMG/M
3300010400\|Ga0134122_10296675	Not Available	1386	Open in IMG/M
3300011429\|Ga0137455_1156677	Not Available	680	Open in IMG/M
3300011438\|Ga0137451_1036644	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1428	Open in IMG/M
3300011440\|Ga0137433_1010969	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	2697	Open in IMG/M
3300012232\|Ga0137435_1099212	Not Available	876	Open in IMG/M
3300012353\|Ga0137367_10920411	Not Available	601	Open in IMG/M
3300012915\|Ga0157302_10186153	Not Available	734	Open in IMG/M
3300012955\|Ga0164298_10226636	Not Available	1111	Open in IMG/M
3300013297\|Ga0157378_11465424	All Organisms → cellular organisms → Bacteria	727	Open in IMG/M
3300013308\|Ga0157375_11726505	Not Available	741	Open in IMG/M
3300014157\|Ga0134078_10650802	Not Available	511	Open in IMG/M
3300014969\|Ga0157376_10380389	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1360	Open in IMG/M
3300015200\|Ga0173480_10176468	Not Available	1113	Open in IMG/M
3300015371\|Ga0132258_10007868	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	21631	Open in IMG/M
3300015371\|Ga0132258_10754702	All Organisms → cellular organisms → Bacteria	2451	Open in IMG/M
3300015371\|Ga0132258_12322501	Not Available	1345	Open in IMG/M
3300015372\|Ga0132256_100598957	Not Available	1217	Open in IMG/M
3300015372\|Ga0132256_103651420	Not Available	517	Open in IMG/M
3300015374\|Ga0132255_104662557	Not Available	581	Open in IMG/M
3300015374\|Ga0132255_104905931	Not Available	567	Open in IMG/M
3300018073\|Ga0184624_10361186	Not Available	650	Open in IMG/M
3300018083\|Ga0184628_10002137	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	9525	Open in IMG/M
3300018083\|Ga0184628_10336460	Not Available	792	Open in IMG/M
3300018469\|Ga0190270_10399014	Not Available	1272	Open in IMG/M
3300018476\|Ga0190274_12752474	Not Available	588	Open in IMG/M
3300018481\|Ga0190271_10023195	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	4840	Open in IMG/M
3300019361\|Ga0173482_10690054	Not Available	526	Open in IMG/M
3300020005\|Ga0193697_1007932	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	2584	Open in IMG/M
3300021082\|Ga0210380_10152483	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1037	Open in IMG/M
3300021384\|Ga0213876_10032151	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	2768	Open in IMG/M
3300022756\|Ga0222622_10217144	All Organisms → cellular organisms → Bacteria	1278	Open in IMG/M
3300022915\|Ga0247790_10115447	Not Available	671	Open in IMG/M
3300023266\|Ga0247789_1094242	Not Available	591	Open in IMG/M
3300024187\|Ga0247672_1004407	All Organisms → cellular organisms → Bacteria	2276	Open in IMG/M
3300024284\|Ga0247671_1017054	All Organisms → cellular organisms → Bacteria	1084	Open in IMG/M
3300024286\|Ga0247687_1008720	All Organisms → cellular organisms → Bacteria	1336	Open in IMG/M
3300025903\|Ga0207680_10034154	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2908	Open in IMG/M
3300025903\|Ga0207680_10064229	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2250	Open in IMG/M
3300025912\|Ga0207707_10136423	All Organisms → cellular organisms → Bacteria	2145	Open in IMG/M
3300025925\|Ga0207650_10026779	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	4118	Open in IMG/M
3300025925\|Ga0207650_10033121	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	3740	Open in IMG/M
3300025926\|Ga0207659_10067996	Not Available	2590	Open in IMG/M
3300025926\|Ga0207659_10285142	Not Available	1351	Open in IMG/M
3300025930\|Ga0207701_10010869	All Organisms → cellular organisms → Bacteria	8963	Open in IMG/M
3300025931\|Ga0207644_10597682	All Organisms → cellular organisms → Bacteria	916	Open in IMG/M
3300025932\|Ga0207690_10668861	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	852	Open in IMG/M
3300025936\|Ga0207670_10267311	All Organisms → cellular organisms → Bacteria	1328	Open in IMG/M
3300025936\|Ga0207670_10464093	All Organisms → cellular organisms → Bacteria	1023	Open in IMG/M
3300025940\|Ga0207691_10133602	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2190	Open in IMG/M
3300025944\|Ga0207661_10017000	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	5372	Open in IMG/M
3300025945\|Ga0207679_11376767	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	647	Open in IMG/M
3300025949\|Ga0207667_10916575	Not Available	867	Open in IMG/M
3300025960\|Ga0207651_10029325	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3485	Open in IMG/M
3300025960\|Ga0207651_11611876	Not Available	585	Open in IMG/M
3300025986\|Ga0207658_10540846	Not Available	1041	Open in IMG/M
3300025986\|Ga0207658_10939487	Not Available	788	Open in IMG/M
3300026078\|Ga0207702_11492207	Not Available	670	Open in IMG/M
3300026095\|Ga0207676_10857478	Not Available	889	Open in IMG/M
3300027821\|Ga0209811_10315224	Not Available	603	Open in IMG/M
3300027874\|Ga0209465_10002852	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	7582	Open in IMG/M
3300027907\|Ga0207428_10000545	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	44872	Open in IMG/M
3300028379\|Ga0268266_10811366	Not Available	904	Open in IMG/M
3300028379\|Ga0268266_10915536	Not Available	848	Open in IMG/M
3300028708\|Ga0307295_10244889	Not Available	515	Open in IMG/M
3300028712\|Ga0307285_10142106	Not Available	654	Open in IMG/M
3300028768\|Ga0307280_10000084	All Organisms → cellular organisms → Bacteria → Proteobacteria	16693	Open in IMG/M
3300028812\|Ga0247825_11102325	Not Available	578	Open in IMG/M
3300031716\|Ga0310813_10253637	Not Available	1466	Open in IMG/M
3300031740\|Ga0307468_100681503	Not Available	856	Open in IMG/M
3300031847\|Ga0310907_10047116	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1654	Open in IMG/M
3300031847\|Ga0310907_10314598	Not Available	792	Open in IMG/M
3300031943\|Ga0310885_10174454	Not Available	1046	Open in IMG/M
3300032012\|Ga0310902_10512010	Not Available	784	Open in IMG/M
3300032179\|Ga0310889_10340338	Not Available	733	Open in IMG/M
3300033412\|Ga0310810_11277465	Not Available	582	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	56.82%
Host-Associated	Host-Associated	43.18%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	49.24%
Plants	Host-Associated → Plants	43.18%
Aquatic	Environmental → Aquatic	7.58%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	49.24%
Rhizosphere	Host-Associated → Plants → Rhizosphere	26.52%
Rhizoplane	Host-Associated → Plants → Rhizoplane	14.39%
Sediment	Environmental → Aquatic → Sediment	6.82%
Roots	Host-Associated → Plants → Roots	2.27%
Freshwater	Environmental → Aquatic → Freshwater	0.76%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	33.33%
Soil	Host-Associated → Plants → Rhizosphere → Soil	19.70%
Loam	Environmental → Terrestrial → Soil → Loam	15.91%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	9.09%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.79%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.52%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.52%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.76%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.76%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	19.70%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	12.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	9.09%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	7.58%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.82%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.55%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.79%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.03%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.03%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.27%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.52%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.52%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.76%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.76%

Habitat	Taxonomy	Distribution
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	12.12%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	6.06%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	6.06%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.55%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	4.55%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	3.79%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.79%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.79%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	3.79%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.03%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.27%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.27%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.27%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.27%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	2.27%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.27%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.27%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.52%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.52%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.52%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.52%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	1.52%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.52%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.76%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.76%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.76%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.76%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.76%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.76%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.76%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.76%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.76%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009678	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011429	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT600_2	Environmental	Open in IMG/M
3300011438	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT500_2	Environmental	Open in IMG/M
3300011440	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT840_2	Environmental	Open in IMG/M
3300012232	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT100_2	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300020005	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m2	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300021384	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9	Host-Associated	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300022915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S171-409R-4	Environmental	Open in IMG/M
3300023266	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S220-509R-4	Environmental	Open in IMG/M
3300024187	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK13	Environmental	Open in IMG/M
3300024284	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK12	Environmental	Open in IMG/M
3300024286	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK28	Environmental	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028708	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152	Environmental	Open in IMG/M
3300028712	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_139	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032179	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062589_1001818113	3300004156	Soil	VLARVAIGDVATSKGGSSAFVAGTFLFGWLVGFATVLKLWHLAQAPRWMILSGVGYVTLMLPPALTGVALAWCAGRMSARGWGPASLALAGAGVVGLVTGLLVL*
Ga0062589_1005939561	3300004156	Soil	VLARVAIRDVATSKGGYSAFVAGTFLFGWLIGFAIVLKLWLLAEAPRWMILSGVGYVTLMLPPAITGFALAWCAGRMSARGWGPASLGLAGAGVVGLVTGLLVL*
Ga0063356_1002158843	3300004463	Arabidopsis Thaliana Rhizosphere	MLHPVLARAATRTPSFFAIIAGTFLFGWLLGLAIVFKVWHLAHAPRWMIMSGVGYVTLMLPPTIVGFALAWTTGRLAARGWGPASLALAGAGVVGLVAGLLVI*
Ga0063356_1010852782	3300004463	Arabidopsis Thaliana Rhizosphere	VLARVAARHFPFSAFVAGTFLFGWLLGLAVVLKLWHLAQAPRWMILSGVGYVTLMLPPTISGFTLAWCAGRLSARGWGPVALGAAGAGVAGLVAGLLVL*
Ga0063356_1028303662	3300004463	Arabidopsis Thaliana Rhizosphere	MLHDVLARAAGRKTSSFYALIAGTFLFGWLLGVAVVFKLWHLAHAPRWMIVSGVGYVTLMLPPIITGFTLAWATGRLAARGWGPASLGLAGAGVVGLVAGLLVI*
Ga0062592_1012137591	3300004480	Soil	VLARVAIRDVATSKGGYSAFVAGTFLFGWLVGFAIVLKLWLLAEAPRWMILSGVGYVTLMLPPAITGFALAWCAGRMSARGWGPASLGLAGAGVVGLVTGLLVL*
Ga0062592_1014878771	3300004480	Soil	VLARVAIRDFSREPPKGFFSAFVAGTFLLGWLLGFASVLKLWNLSQAPRWMILSGVGYVTLMVPPAVTGFALAWCAGRMSARGWGPASL
Ga0066395_100016395	3300004633	Tropical Forest Soil	VLARVGDSSVRSSFPFPAFVAGTFLFGWLLGLAMVLKLWHLAHAPRWFVVSGIGYVTLMLPPTITGFALAWCAGRLAARGWGPASLGLAGAGAAGLVAGFLVL*
Ga0066395_103535002	3300004633	Tropical Forest Soil	VLAREVVRRSPFFTFVGGTFLFGWLLGLAVVLKLWHLSHAPRWMVVSGVGYVSLMLPPAITGFALAWCAGRLAARGWGRPSLGLAGAGVVGLVVGLLVV*
Ga0062591_1012223092	3300004643	Soil	VLARVAIRDFSREPPKGFFSAFVAGTFLLGWLLGFASVLKLWNLSQAPRWMILSGVGYVTLMVPPAVTGFALAWCAGRMSARGWGPA
Ga0062591_1015933421	3300004643	Soil	PARHAEHVFERVVGRTSSFAAFLAGTFVFGWLLGLAIVFKLWHVAQAPRWMMLSGVGYVSMMLPPAITGFAMAWTMGRLAARGWGRPSLGLAGVGAIGLVVGLLAL*
Ga0062594_1008684473	3300005093	Soil	VLAGAAIQETRGPSKGGFSVFVAGTFLLGWLLGLASVLKVWHLSEAPRWMILSGVGYVTLMLPPALMGFALAWCAGRLSARGWGAPSLALAGAGV
Ga0062594_1021147121	3300005093	Soil	LCHAGPLASTRLARHALLVLARVAARHFPFSAFVAGTFLFGWLLGLAVVLKLWHLSAAPRWMILSGVGYVTLMLPPTISGFTLAWCAGRLSARGWGPVALGVAGAGVAGLVAGFLVL*
Ga0066671_102660742	3300005184	Soil	MLSLVLARVGDPPGTTSHTIVRSFPFPAFVAGTFLFGWVAGLAIVLKLWHLAHAPRWFVISGVGYVTLMLPPTIAGFALAWCAGRLAARGWGPASLGLAGAGIAGLVAGLLVL*
Ga0070676_101194273	3300005328	Miscanthus Rhizosphere	VLARVAIRDVATPKGGYSAFVAGTFLFGWLVGFAIVLKLWLLAEAPRWMILSGVGYVTLMLPPAITGFALAWCAGRMSARGWGPASLGLAGAGVVGLVTGLLVL*
Ga0070683_1000255404	3300005329	Corn Rhizosphere	MLGTVLARAAIRQIGTPKGASSVFVAGTFLLGWLLGLASVLKLWHLSAAPRWMILSGVGYVTLMLPPALVGFALAWCAGRLVARGWGAPSLGLAGAGVIGLVAGLLVL*
Ga0070683_1003304243	3300005329	Corn Rhizosphere	MLCHVFARATVRSSPFSVVVAGTFLFGWLLGVAIVFKLWHLAHAPRWLVVSGVGYVTLMLPPTITGFGLAWCAGRLAARGWGPASLLLAGAGVAGLVAGLLAI*
Ga0070683_1008218632	3300005329	Corn Rhizosphere	VLARVAIRDFSREPPKGFFSAFVAGTFLLGWLLGFASVLKLWNLSQAPRWMILSGVGYVTLMVPPAITGFVLAWCAGRMSARGWGAASVALAGAGVIGLVAGLLVL*
Ga0070690_1000864462	3300005330	Switchgrass Rhizosphere	VVRRSPFSTIVAGTFLSGWLLGLAVVLKLWHLAHAPRWMLVSGVGYVSLMLPPAIAGFALAWCAGRLAARGWGRPSLGLAGAGVVGLVVGLLVV*
Ga0070670_1000555236	3300005331	Switchgrass Rhizosphere	VPHAIRSVFFARVAGTFLFGWLLGLAVVFKLWQLAHAPRWMLMSGVGYVTLMLPPIIAGFALAWCAGRLAARGWGPASLGLGAAGVVGLVAGVLVL*
Ga0066388_1042262611	3300005332	Tropical Forest Soil	VACTFLFGWLLGLAIVCKLWHLAHAPRWMVVSGVGYVTLMLPPAIAGFMLAWCTGRLAARGWGPASLGMAGAGVAGLVAGLLAI*
Ga0070666_101210074	3300005335	Switchgrass Rhizosphere	VLAREVVRRSPFSTIVAGTFLSGWLLGLAVVLKLWHLAHAPRWMLVSGVGYVSLMLPPAIAGFALAWCAGRLAARGWGRPSLGLAGAGVVGLVVGLLVV*
Ga0070682_1011159881	3300005337	Corn Rhizosphere	RSSPFSLVVAGTFLFGWLLGVAIVFKLWHLAHAPRWLVVSGVGYVTLMLPPTITGFALAWGTGRLAARGWGPAALLLAGAGVAGLVAGVLAI*
Ga0068868_1006600712	3300005338	Miscanthus Rhizosphere	FFAIIAGTFLFGWLLGLAIVFKVWHLAHAPRWMIVSGVGYVTLMLPPAITGFALAWCAGRMSARGWGPASLGLAGAGVVGLVTGLLVL*
Ga0070689_1003584313	3300005340	Switchgrass Rhizosphere	MLHPVLARAATRTPSFFAIIAGTFLFGWLLGLAIVFKVWHLAHAPRWMIVSGVGYVTLMLPPTIVGFALAWTTGRLAARGWGPASLALAGAGVVGLVAGLLVI*
Ga0070673_1000170796	3300005364	Switchgrass Rhizosphere	VFERVVGRTSSFAAFLAGTFVFGWLLGLAIVFKLWHVAQAPRWMMLSGVGYVSMMLPPAITGFAMAWTMGRLAARGWGRPSLGLAGVGAIGLVVGLLAL*
Ga0070673_1007881282	3300005364	Switchgrass Rhizosphere	VLAGAAIQETRGPSKGGFSVFVAGTFLLGWLLGLASVLKVWHLSEAPRWMILSGVGYVTLMLPPALMGFALAWCAGRLSARGWGAPSLALAGAGVIGLVAGLLAV*
Ga0070659_1015619181	3300005366	Corn Rhizosphere	AGTFLFGWLVGFAIVLKLWLLAEAPRWMILSGVGYVTLMLPPAITGFALAWCAGRMSARGWGPASLGLAGAGVVGLVTGLLVL*
Ga0070710_113124901	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	RHPSFCATQARLRQRGSRAILSLVLARVGDPPGTASHTIVRNFPFPAFVAGTFLFGWVAGLAIVLKLWHLAHAPRWFVVSGVGYVTLMLPPTIVGFALAWCAGRLAARGVGPASLGLAGAGIAGLVAGLLVL*
Ga0070700_1004497352	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	VFSRVAARHFPFPAFVAGTFLFGWLLGVAVVLKLWHLAQAPRWMILSGVGYVTLMLPPTISGFTLAWCAGRLSARGWGPVALGVAGAGVAGLVAGFLVL*
Ga0070694_1016736511	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	RHAHLVLARVAIGDVATSKGGSSAFVAGTFLFGWLVGFATVLKLWHLAQAPRWMILSGVGYVTLMLPPALTGVALAWCAGRMSARGWGPASLALAGAGVVGLVTGLLVL*
Ga0066681_101320731	3300005451	Soil	MLSIVLARVGVRSFPFSAFVAGTFMFGWLLGLAIVLKLWHLAHAPRWFVVSGIGYITLMLPPTIVGFALAWCTGKLAARGWGPLSLGLAGAGVAGLVGGFLVL*
Ga0070678_1000467551	3300005456	Miscanthus Rhizosphere	ARHAHLVLARVAIGDVATSKGGSSAFVAGTFLFGWLVGFATVLKLWHLAQAPRWMILSGVGYVTLMLPPALTGVALAWCAGRMSARGWGPASLALAGAGVVGLVTGLLVL*
Ga0070678_1020041571	3300005456	Miscanthus Rhizosphere	AGTFLLGWLLGLASVLKVWHLSEAPRWMILSGVGYVTLMLPPALMGFALAWCAGRLSARGWGAPSLALAGAGVIGLVAGLLAV*
Ga0070681_101262883	3300005458	Corn Rhizosphere	MVRGEPSSPTPRAATVRSSPFSVVVAGTFLFGWLLGVAIVFKLWHLAHAPRWLVVSGVGYVTLMLPPTITGFGLAWCAGRLAARGWGPASLLLAGAGVAGLVAGLLVI*
Ga0070685_104215302	3300005466	Switchgrass Rhizosphere	ELCHAALLASTAPARHAEHVFERVVGRTSSFAAFLAGTFVFGWLLGLAIVFKLWHVAQAPRWMMLSGVGYVSMMLPPAITGFAMAWTMGRLAARGWGRPSLGLAGVGAIGLVVGLLAL*
Ga0073909_101401882	3300005526	Surface Soil	MLSLVLARVGDSPGTASHTIVRTFPFPAFVAGTFLFGWVAGLAIVLKLWHLAHAPRWFVVSGVGYVTLMLPPTIAGFALAWCAGRLAARGWGPASIGLAGAGIAGLVAGLLVL*
Ga0070684_1002927333	3300005535	Corn Rhizosphere	VLARVGVRQSPFAALVAGTFLFGWLLGLAIVFKLWHVAHAPRWMIMSGFGYVTLMLPPTLTGFVLAWCTGRLAARGWGPASLSLAGAGVAGLVAGLIVL*
Ga0070672_1007640842	3300005543	Miscanthus Rhizosphere	VGRTSSFAAFLAGTFVFGWLLGLAIVFKLWHVAQAPRWMMLSGVGYVSMMLPPAITGFAMAWTMGRLAARGWGRPSLGLAGVGAIGLVVGLLAL*
Ga0070686_1015900411	3300005544	Switchgrass Rhizosphere	VLARVATRHFPFSAFVAGTFLFGWLLGVAVVLKLWHLSQAPRWMIVSGVGYVTLMLPPTISGFTLAWCAGRLSARGWGPVALGVAGAG
Ga0070665_1021721312	3300005548	Switchgrass Rhizosphere	MLHPVLARAATRTPSFFAIIAGTFLFGWLLGLAIVFKVWHLAHAPRWMIVSGVGYVTLMLPPTIVGFALAWTTGRLAARGWGPASLAL
Ga0068855_1018839181	3300005563	Corn Rhizosphere	HAHLVLARVAIRDVATPKGGYSAFVAGTFLFGWLVGFAIVLKLWLLAEAPRWMILSGVGYVTLMLPPAITGFALAWCAGRMSARGWGPASLGLAGAGVVGLVTGLLVL*
Ga0068856_1013857812	3300005614	Corn Rhizosphere	GFPNPPAMVRGEQSSPAPHATNVRSSPFSLVVAGTFLFGWLLGVAIVFKLWHLAHAPRWLVVSGVGYVTLMLPPTITGFALAWGTGRLAARGWGPASLLLAGAGVAGLVAGVLAI*
Ga0068852_1007644821	3300005616	Corn Rhizosphere	MLHPVLARAATRTPSFFAIIAGTFLFGWLLGLAIVFKVWHLAHAPRWMIVSGVGYVTLMLPPAITGFALAWCAGRMSARGWGPASLGLAGAGVVGLVTGLLVL*
Ga0068864_1006272702	3300005618	Switchgrass Rhizosphere	VLARVATRHFPFSAFVAGTFLFGWLLGVAVVLKLWHLSQAPRWMIVSGVGYVTLMLPPTISGFTLAWCAGRLSARGWGPVALGVAGAGVAGLVAGFLVL*
Ga0068858_1007386982	3300005842	Switchgrass Rhizosphere	ASRVLAREVVRRSPFSTIVAGTFLSGWLLGLAVVLKLWHLAHAPRWMLVSGVGYVSLMLPPAIAGFALAWCAGRLAARGWGRPSLGLAGAGVVGLVVGLLVV*
Ga0097621_1004158832	3300006237	Miscanthus Rhizosphere	MLLLVLAHVGDKGSAVSDKRSVFVAGTFLFGWLLGLAIVCKLWHLAHAPRWMVVSGVGYVTLMLPPTIAGFALAWCTGRLAARGWGPASLGLAGAGVAGLVAGLLVI*
Ga0068871_1008270201	3300006358	Miscanthus Rhizosphere	VLARVAIGDVATSKGGSSAFVAGTFLFGWLVGFATVLKLWHLAQAPRWMILSGVGYVTLMLPPALTGVALAWCAGRMSARGWGP
Ga0075420_1010218052	3300006853	Populus Rhizosphere	LASTPPARHAERVLERVVGRTSNFAVFLGGTFLFGWLLGLAIVFKLWHLPQAPRWMLFSGVGYVSLMLPPAITGFAVAWSMLRLAARGWGRASLGLAGAGAVGLVAGLLVL*
Ga0075425_1018889792	3300006854	Populus Rhizosphere	VLARAVACRSPFATYVAGTFLFGWLLGLAIVLKLWHLAHAPRWMVVSGVGYVSLMLPPTLTGFALAWCTGRLAARGWGRPSLGLAGVGVVGLVA
Ga0075434_1020253552	3300006871	Populus Rhizosphere	FSAFVAGTFLFGWLLGVAVVLKLWHLSQAPRWMIVSGVGYVTLMLPPTISGFTLAWCAGRLSARGWGPVALGVAGAGVAGLVAGFLVL*
Ga0111538_119515131	3300009156	Populus Rhizosphere	VLERVVGRTSSLAAFLAGTFVFGWLLGLAIVFKLWDVSHAPRWMMFSGVGYVSMMLPPALSGFAMAWSMRRLAARGWGRASLGLAGVGAVGLVAGLLVL*
Ga0105242_126147201	3300009176	Miscanthus Rhizosphere	SVFVAGTFLLGWLLGLASVLKVWHLSVAAGSIILRKVGYVTLMLPPALMGFALAWCAGRLSARGWGAPSLALAGAGVIGLVAGLLAV*
Ga0105252_100988533	3300009678	Soil	LCHAGPLASTRLARHALLVLARVAARHFPFSAFVAGTFLFGWLLGLAVVLKLWHLSEAPRWMILSGVGYVTLMLPPTISGFTLAWCAGRLSARGWGPLALGVAGAGVAGLVAGF
Ga0126377_108018471	3300010362	Tropical Forest Soil	MLASTRPTRHAQLVFAGAVRTSPFSALVAGTFLFGWLLGAAVVLKLWHLAEAPRWMILSGVGYVTLMLPPAITGFALAWCAGRLAGRGWGSASLGLAAVGVLGLVAGLLVI*
Ga0134124_113387043	3300010397	Terrestrial Soil	VVRRSPFSTIVAGTFLSGWLLGLAVVLKLWHLAHAPRWMLVSGVGYVSLMLPPAIAGFALAWCAGRLAARGWGRPSLGLAGAGVVG
Ga0126383_131188621	3300010398	Tropical Forest Soil	VLARVGDSSVRSSFPFPAFVAGTFLFGWLLGLAMVLKLWHLAHAPRWFVVSGIGYVTLMLPPTITGFALAWCAGRLAARGWGPASL
Ga0134122_102966752	3300010400	Terrestrial Soil	VVRRSPFSTIVAGTFLSGWLLGLAVVLKLWHLAHAPRWMLVSGVGYVSLMLPPAIAGFALAWCAGRLAARGWGRPSLGLAGAGVVGLVVGLLAV*
Ga0137455_11566772	3300011429	Soil	VLARVAARHFPFSAFVAGTFLFGWLLGLAVVLKLWHLSEAPRWMILSGVGYVTLMLPPTISGFTLAWCAGRLSARGWGPVALGVAGAGVAGLVAGLLVL*
Ga0137451_10366441	3300011438	Soil	MLSNVLAREQSSPAPPAIRSPFFALVAGTFLFGWLLGLAVVFKLWQLSHAPRWMLMSGVGYVTLMLPPTITGFTLAWCAGRLAARGWGPASLGLA
Ga0137433_10109693	3300011440	Soil	MGRGEQSSPAPHATHFPFSAFVAGTFLFGWLLGLAVVLKLWHLSQAPRWMILSGVGYVTLMLPPTISGFTLAWCAGRLSARGWGPLALGVAGAGVAGLVAGFLVL*
Ga0137435_10992122	3300012232	Soil	VLARVGVRSSPFGTFVAGTFLFGWLLGLAIVLKLWHLAQAPRWLVVSGVGYVSLILPPTITGFALAWCTGRLSARGWGRPSLGLAGVGVVGLVAGLLVL*
Ga0137367_109204111	3300012353	Vadose Zone Soil	VLARAAIRPATREPWQGSFSAYVAGTFLFGWVLGLVSVLKLWNLSHAPRWMILSGVGYVTLMLPPALMGFAFAWCAGRLAARGWGRASLALAGAGVTGLVAGLLVL*
Ga0157302_101861531	3300012915	Soil	MLGTVLARAAIRQIGTPKGASSVFVAGTFLLGWLLGLASVLKLWHLSAAPRWMILSGVGYVTLMLPPALVGFALAWCAGRLVARGWGA
Ga0164298_102266361	3300012955	Soil	VLARVAIRDFSREPPKGFFSAFVAGTFLLGWLLGFASVLKLWNLSQAPRWMILSGVGYVTLMVPPAITGFVLAWCAGRMSARGWSAASLALAGAGVIGLVAGLLVI*
Ga0157378_114654242	3300013297	Miscanthus Rhizosphere	HASRVLAREVVRRSPFSTIVAGTFLSGWLLGLAVVLKLWHLAHAPRWMLVSGVGYVSLMLPPAIAGFALAWCAGRLAARGWGRPSLGLAGAGVVGLVVGLLVV*
Ga0157375_117265052	3300013308	Miscanthus Rhizosphere	MLHPVLARAATRTPSFFAIIAGTFLFGWLLGLAIVFKVWHLAHAPRWMIVSGVGYVTLMLPPTIVGFALAWTTGRLAARGWGPSSLALAGAGVVGLVAGLLVI*
Ga0134078_106508021	3300014157	Grasslands Soil	MLSLVLARVGDSPGTASRTIVRTFPFPAFVAGTFLFGWVAGLAIVLKLWHLAHAPRWFVISGVGYVTLMLPPTIAGFALAWCIGRLAARGWGPASLGLAGAGIAGLVAGLL
Ga0157376_103803893	3300014969	Miscanthus Rhizosphere	VLARVAIRPATREPWQGWFAAFVAGTFLFGWVLGLASVLKLWNLSNAPRWMIFSGVGYVTLMLPPALTGFALAWCAGRLAARGWGRASLAL
Ga0173480_101764681	3300015200	Soil	MLHDVLARAAGRKTSSFYALIAGTFLFGWLLGVAVVFKLWHLAHAPRWMIVSGVGYVTLMLPPIITGFTLAWATGRLAARGWGPASLGLAGAGVVGLVAGL
Ga0132258_1000786812	3300015371	Arabidopsis Rhizosphere	MGRAMLTPVFARAAARKLSSPFAALVAGTFLFGWLSGLVVVFKLWRISHAPGWMVLSGVGYVTLMLPPAITGFTLAWCAGRLAARGWGTPSLGLAGAGVLGLVAGLLAL*
Ga0132258_107547022	3300015371	Arabidopsis Rhizosphere	VVRRSPFPTFVAATFLSGWLLGLAVVLKLWHLAHAPRWMVVSGVGYVTLMLPPAIAGFALAWCAGRLAGRGWGRPSLGLAGMGVVGLVAGFLAL*
Ga0132258_123225013	3300015371	Arabidopsis Rhizosphere	MLRFVLARAVTRNAPFSAVVAGTFLLGWVLGLAVVLKLWHLAHPPRWMFVSGVGYVTLMLPPALVGFGLAWCAGRLAARGVGPASLGLAAAGVIGLVAGLLVV*
Ga0132256_1005989573	3300015372	Arabidopsis Rhizosphere	VLERVVGRTSSFAAFLAATFIFGWLLGLAVVFKLWHVAHAPRWMIFSGVGYVSLMLPPAILGFAMAWSTVRLAARGWGRASLGLAGVGVVGLVAGLLVL*
Ga0132256_1036514201	3300015372	Arabidopsis Rhizosphere	QSFFAIVAGTFLFGWLLGVAIVFKLWHLAHAPRWMIMSGVGYVTLMLPPTITGFTLAWATGRLAARGWGPASLGLAGAGVVGLVAGLLVI*
Ga0132255_1046625571	3300015374	Arabidopsis Rhizosphere	TPSFFAIIAGTFLFGWLLGLAIVFKVWHLAHAPRWMIMSGVGYVTLMLPPTIVGFALAWTTGRLAARGWGPASLALAGAGVVGLVAGLLVI*
Ga0132255_1049059311	3300015374	Arabidopsis Rhizosphere	VVRRSPFPTFVAATFLSGWLLGLAVVLKLWHLAHAPRWMVVSGVGYVTLMLPPAIAGFALAWCAGRLAGRGWGRPSLALAGMGVVGLVAGFLAL*
Ga0184624_103611862	3300018073	Groundwater Sediment	VLARVAARHFPFSAFVAGTFLFGWLLGLAVVLKLWHLSEAPRWMILSGVGYVTLMLPPTISGFTLAWCAGRLAARGWGPVALGAAG
Ga0184628_100021372	3300018083	Groundwater Sediment	VLARVAVRHFPFSAFVGGTFLFGWLLGLAVVLKLWHLSAAPRWMILSGVGYVTLMLPPTISGFTLAWCAGRLSARGWGPVALGAAGVGVVGLVAGLLVL
Ga0184628_103364602	3300018083	Groundwater Sediment	MLSNVLAREQSSPAPPAIRSPFFALVAGTFLFGWLLGLAVVFKLWQLSHAPRWMLMSGVGYVTLMLPPTITGFTLAWCAGRLAARGWGPASLGLAGAGVAGLVAGLLVL
Ga0190270_103990143	3300018469	Soil	VLARVAARHFPFSAFVAGTFLFGWLLGLAVVLKLWHLSQAPRWMILSGVGYVTLMLPPTISGFTLAWCAGRLSARGWGPVALGVAGAGVAGLVAGLLVL
Ga0190274_127524741	3300018476	Soil	MLHDVLARAAGRKTSSFYALVAGTFLFGWLLGVAVVFKLWHLAHAPRWMIVSGVGYVTLMLPPIITGFTLAWATGRLAARGWGPASLGLAGAGVVGLVAG
Ga0190271_100231957	3300018481	Soil	VLARVTARNFPFSALVAGTFLFGWLLGVAVVLKLWHLSQAPRWMILSGVGYVTLMLPPTISGFTLAWCAGRLSARGWGPVALSVAGAGVAGLVAGFLVL
Ga0173482_106900541	3300019361	Soil	VFERVVGRTSSFAAFLAGTFVFGWLLGLAIVFKLWHVAQAPRWMMLSGVGYVSMMLPPAITGFAMAWTMGRLAARGWGRPSLGLAGVGAIGLVVGLLA
Ga0193697_10079323	3300020005	Soil	VLERVVGRTSNFAVFLGGTFVFGWLLGLAIVFKLWDVSHAPRWMMFSGVGYVSMMLPPALSGFAVAWSMGRLAARGWGRASLGLAGVGAVGLVAGLLVL
Ga0210380_101524831	3300021082	Groundwater Sediment	PPAIRSPFFALVAGTFLFGWLLGLAVVFKLWQLSHAPRWMLMSGVGYVTLMLPPTITGFTLAWCAGRLAARGWGPASLGLAGAGVAGLVAGLLVL
Ga0213876_100321515	3300021384	Plant Roots	MLGPVLARAAIRDTESPKTAFSAFVAGTFLFGWALGFAAVLKLWHLSHAPRWMVLSGVGYVTLMLPPAIVGFALAWCAGRLAARGWGPGPLALAGAGVGGLVAGLLAL
Ga0222622_102171443	3300022756	Groundwater Sediment	VFERVVGRTSSFAAFLAGTFVFGWLLGLAIVFKLWHVAQAPRWMMLSGVGYVSMMLPPAITGFAMAWTMGRLAARGWGRPSLGLAGVGAVGLVAGLLAL
Ga0247790_101154472	3300022915	Soil	MLHPVLARAATRTPSFFAIIAGTFLFGWLLGLAIVFKVWHLAHAPRWMIVSGVGYVTLMLPPIITGFTLAWATGRLAARGWGPASLGLAGAGVVGLVAGLLVI
Ga0247789_10942422	3300023266	Soil	MLHDVLARAAGRKTSSFYALIAGTFLFGWLLGVAVVFKLWHLAHAPRWMIVSGVGYVTLMLPPIITGFTLAWATGRLAARGWGPASLGLAGAGVVGLVAGLLVI
Ga0247672_10044073	3300024187	Soil	VLARVAIRHFGTPAFVAGTFLFGWLLGLASVLKLWHLAQAPRWMILSGVGYVTLMLPPALAGFALAWCAGRLSARGWGPASLSLGGVGVIGLVAGLLVL
Ga0247671_10170541	3300024284	Soil	VAGTFLFGWLLGLASVLKLWHLAQAPRWMILSGVGYVTLMLPPALAGFALAWCAGRLSARGWGPASLSLGGVGVIGLVAGLLVL
Ga0247687_10087203	3300024286	Soil	VLARVAIRHFGTPAFVAGTFLFGWLLGLASVLKLWHLAQAPRWMILSGVGYVTLMLPPALAGFALAWCAGRLSARGWGPASLSLGGVGVIGLVAGL
Ga0207680_100341546	3300025903	Switchgrass Rhizosphere	VLARVAIRDVATPKGGYSAFVAGTFLFGWLVGFAIVLKLWLLAEAPRWMILSGVGYVTLMLPPAITGFALAWCAGRMSARGWGPASLGLAGAGVVGLVTGLLVL
Ga0207680_100642292	3300025903	Switchgrass Rhizosphere	VVRRSPFSTIVAGTFLSGWLLGLAVVLKLWHLAHAPRWMLVSGVGYVSLMLPPAIAGFALAWCAGRLAARGWGRPSLGLAGAGVVGLVVGLLVV
Ga0207707_101364233	3300025912	Corn Rhizosphere	MVRGEPSSPTPRAATVRSSPFSVVVAGTFLFGWLLGVAIVFKLWHLAHAPRWLVVSGVGYVTLMLPPTITGFGLAWCAGRLAARGWGPASLLLAGAGVAGLVAGLLVI
Ga0207650_100267797	3300025925	Switchgrass Rhizosphere	VPHAIRSVFFARVAGTFLFGWLLGLAVVFKLWQLAHVPRWMLMSGVGYVTLMLPPIIAGFALAWCAGRLAARGWGPASLGLGAAGVVGLVAGVLVL
Ga0207650_100331214	3300025925	Switchgrass Rhizosphere	VFGWLLGLAIVFKLWHVAQAPRWMMLSGVGYVSMMLPPAITGFAMAWIMGRLAARGWGRPSLGLAGVGAVGLVAGLLAL
Ga0207659_100679965	3300025926	Miscanthus Rhizosphere	VFERVVGRTSSFAAFLAGTFVFGWLLGLAIVFKLWHVAQAPRWMMLSGVGYVSMMLPPAITGFAMAWTMGRLAARGWGRPSLGLAGVGAIGLVVGLLAL
Ga0207659_102851423	3300025926	Miscanthus Rhizosphere	VLARVAIRDVATSKGGYSAFVAGTFLFGWLVGFAIVLKLWLLAEAPRWMILSGVGYVTLMLPPAITGFALAWCAGRMSARGWGPASLGLAGAGVVGLVTGLLVL
Ga0207701_1001086910	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	VLAGAAIQETRGPSKGGFSVFVAGTFLLGWLLGLASVLKVWHLSEAPRWMILSGVGYVTLMLPPALMGFALAWCAGRLSARGWGAPSLALAGAGVIGLVAGLLAV
Ga0207644_105976821	3300025931	Switchgrass Rhizosphere	VLARVAIGDVATSKGGSSAFVAGTFLFGWLVGFATVLKLWHLAQAPRWMILSGVGYVTLMLPPALTGVALAWCAGRMSARGWGPASLALAGAGVVGLVT
Ga0207690_106688611	3300025932	Corn Rhizosphere	AFVAGTFLFGWLVGFAIVLKLWLLAEAPRWMILSGVGYVTLMLPPAITGFALAWCAGRMSARGWGPASLGLAGAGVVGLVTGLLVL
Ga0207670_102673111	3300025936	Switchgrass Rhizosphere	MLHPVLARAATRTPSFFAIIAGTFLFGWLLGLAIVFKVWHLAHAPRWMIVSGVGYVTLMLPPTIVGFALAWTTGRLAARGWGPASLALAGA
Ga0207670_104640931	3300025936	Switchgrass Rhizosphere	VLARVAIGDVATSKGGSSAFVAGTFLFGWLVGFATVLKLWHLAQAPRWMILSGVGYVTLMLPPALTGVALAWCAGRMSARGWGPASLALAGAGVVGLVTGLLVL
Ga0207691_101336023	3300025940	Miscanthus Rhizosphere	MLKRTFSAILSAAFLAGTFVFGWLLGLAIVFKLWHVAQAPRWMMLSGVGYVSMMLPPAITGFAMAWTMGRLAARGWGRPSLGLAGVGAIGLVVGLLAL
Ga0207661_100170004	3300025944	Corn Rhizosphere	MLGTVLARAAIRQIGTPKGASSVFVAGTFLLGWLLGLASVLKLWHLSAAPRWMILSGVGYVTLMLPPALVGFALAWCAGRLVARGWGAPSLGLAGAGVIGLVAGLLVL
Ga0207679_113767672	3300025945	Corn Rhizosphere	AFVAGTFLLGWLLGFASVLKLWNLSQAPRWMILSGVGYVTLMVPPAVTGFALAWCAGRMSARGWGPASLALAGAGVIGLVAGLLVL
Ga0207667_109165751	3300025949	Corn Rhizosphere	MRPAHQAGTFLFGWLVGFAIVLKLWLLAEAPRWMILSGVGYVTLMLPPAITGFALAWCAGRMSARGWGPASLGLAGAGVVGLVTGLLVL
Ga0207651_100293251	3300025960	Switchgrass Rhizosphere	VFERVVGRTSSFAAFLAGTFVFGWLLGLAIVFKLWHVAQAPRWMMLSGVGYVSMMLPPAITGFAMAWTMGRLAARGWGRPSLGLA
Ga0207651_116118761	3300025960	Switchgrass Rhizosphere	ARAAIRQIGTPKGASSVFVAGTFLLGWLLGLASVLKLWHLSAAPRWMILSGVGYVTLMLPPALVGFALAWCAGRLSARGWGAPSLALAGAGVIGLVAGLLAV
Ga0207658_105408463	3300025986	Switchgrass Rhizosphere	QSLGTFLFGWLVGFAIVLKLWLLAEAPRWMILSGVGYVTLMLPPAITGFALAWCAGRMSARGWGPASLGLAGAGVVGLVTGLLVL
Ga0207658_109394872	3300025986	Switchgrass Rhizosphere	VVRRSPFSTNVAGTFLSGWLLGLAVVLKLWHLAHAPRWMLVSGVGYVSLMLPPAIAGFALAWCAGRLAARGWGRPSLGLAGAGVVGLVVGLLVV
Ga0207702_114922072	3300026078	Corn Rhizosphere	ATREPWQGWFSAYVAATYQIGWMLGIVSVLKLWNLSHAPRWMIVSGVGYVTLMLPPTITGFALAWGTGRLAARGWGPASLLLAGAGVAGLVAGVLAI
Ga0207676_108574782	3300026095	Switchgrass Rhizosphere	VLARVATRHFPFSAFVAGTFLFGWLLGVAVVLKLWHLSQAPRWMIVSGVGYVTLMLPPTISGFTLAWCAGRLSARGWGPVALGVAGAGVAGLVAGFLVL
Ga0209811_103152242	3300027821	Surface Soil	MLSLVLARVGDSPGTASHTIVRTFPFPAFVAGTFLFGWVAGLAIVLKLWHLAHAPRWFVVSGVGYVTLMLPPTIAGFALAWCAGRLAARGWGPASIGLAGAGIAGLVAGLLVL
Ga0209465_100028527	3300027874	Tropical Forest Soil	VLARVGDSSVRSSFPFPAFVAGTFLFGWLLGLAMVLKLWHLAHAPRWFVVSGIGYVTLMLPPTITGFALAWCAGRLAARGWGPASLGLAGAGAAGLVAGFLVL
Ga0207428_1000054540	3300027907	Populus Rhizosphere	VLARVAARHFPFSAFVAGTFLFGWLLGLAVVLKLWHLSEAPRWMILSGVGYVTLMLPPTISGFTLAWCAGRLSARGWGPVALAVAGAGVAGLVAGFLAL
Ga0268266_108113662	3300028379	Switchgrass Rhizosphere	VLAGAAIQETRGPSKGGFSVFVAGTFLLGWLLGLASVLKVWHLSEAPRWMILSGVGYVTLMLPPALMGFALAWCAGRLVARGWGAPSLGLAGAGVIGLVAGLLVL
Ga0268266_109155361	3300028379	Switchgrass Rhizosphere	MLHPVLARAATRTPSFFAIIAGTFLFGWLLGLAIVFKVWHLAHAPRWMIVSGVGYVTLMLPPTIVGFALAWTTGRLAARGWGPASLALAGAGVVGL
Ga0307295_102448891	3300028708	Soil	FLFGWLLGLAIVFKLWHLSQAPRWMLFSGVGYVSMMLPPAITGFAVAWSMVRLAARGWGRASLGLAGAGAVGLVAGLLVL
Ga0307285_101421061	3300028712	Soil	VFERVVGRTSSFAAFLAGTFVFGWLLGLAIVFKLWHVAQAPRWMMLSGVGYVSMMLPPAITGFAMAWTMGRLAARGWGRP
Ga0307280_1000008410	3300028768	Soil	VLARVAIRPTTREPWQGWFSAFVAGTFLFGWLLGLASVLKLWNLSHAPRWMILSGVGYVTLMLPPALTGFAFAWCAGRLAARGWGRASLALAGAGVTGLVAGLLVL
Ga0247825_111023252	3300028812	Soil	VLARVAARHFPFSAFVAGTFLFGWLLGLAVVLKLWHLSQAPRWMILSGVGYVTLMLPPTISGFTLAWCAGRLSARGWGPVALGVAGAGVAGLV
Ga0310813_102536372	3300031716	Soil	VLAPAAIRQITTPKGAFSAFVAGTFLFGWVLGLAIVLQLWHLSNAPRWMILSGVGYVTMMLPPTLIGFAIAWCGVRLSARGWGLASLALAGAGVIGLVAGLIVI
Ga0307468_1006815032	3300031740	Hardwood Forest Soil	VLARVAIRQQVESAIPSKGLFSAFVAGTFLFGWLLGLASVLKLWHLAHAPRWMILSGVGYVTLMLPPALTGFGLAWCAGRLAARGWGPASLAMAGAGVIGLVAGLLVL
Ga0310907_100471164	3300031847	Soil	VLARVAIRDVATSKGGYSAFVAGTFLFGWLVGFAIVLKLWLLAEAPRWMILSGVGYVTLMLPPAITGFALAWCAGRMSARGGGPASRGLAGAGVVGL
Ga0310907_103145982	3300031847	Soil	VFSRVAARHFPFPAFVAGTFLFGWLLGVAVVLKLWHLAQAPRWMILSGVGYVTLMLPPTISGFTLAWCAGRLSARGWGPVALGVAGAGVAGLVAGFLVL
Ga0310885_101744543	3300031943	Soil	VLARVAARHFPFSAFVAGTFLFGWLLGLAVVLKLWHLSEAPRWMILSGVGYVTLMLPPTISGFTLAWCAGRLSARGWGPVALGVAGAGVAGLVAGLLVL
Ga0310902_105120103	3300032012	Soil	VLARVAIRDVATSKGGYSAFVAGTFLFGWLVGFAIVLKLWLLAEAPRWMILSGVGYVTLMLPPAITGFALAWCAGRMSARGWGPASL
Ga0310889_103403381	3300032179	Soil	VLARVAIRDVATSKGGYSAFVAGTFLFGWLVGFAIVLKLWLLAEAPRWMILSGVGYVTLMLPPIITGFTLAWATGRLAARGWGPASLGLAGAG
Ga0310810_112774651	3300033412	Soil	VLARVAIRDFSREPPKGFFSAFVAGTFLLGWLLGFASVLKLWNLSQAPRWMILSGVGYVTLMVPPAVTGFALAWCAGRMSARGWGPASLALAGAGVIGLVAGLLVL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F060999

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences