Metagenome / Metatranscriptome Family F060878

Basic Information
Family ID	F060878
Family Type	Metagenome / Metatranscriptome
Number of Sequences	132
Average Sequence Length	44 residues
Representative Sequence	GAFYASLDDAGKATLRDTVRASLPEGPFTLPARAWLALGTVPG
Number of Associated Samples	96
Number of Associated Scaffolds	132

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.76 %
% of genes near scaffold ends (potentially truncated)	99.24 %
% of genes from short scaffolds (< 2000 bps)	90.91 %
Associated GOLD sequencing projects	91
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Bacteria (94.697 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (12.879 % of family members)
Environment Ontology (ENVO)	Unclassified (31.061 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (54.545 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 32.56% β-sheet: 34.88% Coil/Unstructured: 32.56%
Feature Viewer

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Pfam ID	Name	% Frequency in 132 Family Scaffolds
PF00274	Glycolytic	3.79
PF00578	AhpC-TSA	3.79
PF01022	HTH_5	3.03
PF00903	Glyoxalase	2.27
PF12681	Glyoxalase_2	1.52
PF07885	Ion_trans_2	1.52
PF01432	Peptidase_M3	1.52
PF03861	ANTAR	1.52
PF06897	DUF1269	1.52
PF01883	FeS_assembly_P	1.52
PF13581	HATPase_c_2	1.52
PF03640	Lipoprotein_15	1.52
PF04107	GCS2	1.52
PF00196	GerE	1.52
PF01061	ABC2_membrane	0.76
PF00587	tRNA-synt_2b	0.76
PF00313	CSD	0.76
PF03631	Virul_fac_BrkB	0.76
PF00296	Bac_luciferase	0.76
PF04828	GFA	0.76
PF03706	LPG_synthase_TM	0.76
PF00990	GGDEF	0.76
PF07676	PD40	0.76
PF13649	Methyltransf_25	0.76
PF04463	2-thiour_desulf	0.76
PF02518	HATPase_c	0.76
PF08240	ADH_N	0.76
PF13340	DUF4096	0.76
PF07690	MFS_1	0.76
PF07040	DUF1326	0.76
PF00248	Aldo_ket_red	0.76
PF01850	PIN	0.76
PF13377	Peripla_BP_3	0.76
PF00211	Guanylate_cyc	0.76
PF08450	SGL	0.76
PF02233	PNTB	0.76
PF07992	Pyr_redox_2	0.76
PF00535	Glycos_transf_2	0.76
PF01451	LMWPc	0.76
PF14938	SNAP	0.76
PF00440	TetR_N	0.76
PF00107	ADH_zinc_N	0.76
PF13439	Glyco_transf_4	0.76
PF07099	DUF1361	0.76
PF00953	Glycos_transf_4	0.76
PF03795	YCII	0.76

COG ID	Name	Functional Category	% Frequency in 132 Family Scaffolds
COG3588	Fructose-bisphosphate aldolase class 1	Carbohydrate transport and metabolism [G]	3.79
COG4803	Uncharacterized membrane protein	Function unknown [S]	1.52
COG1164	Oligoendopeptidase F	Amino acid transport and metabolism [E]	1.52
COG4315	Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown)	Function unknown [S]	1.52
COG3707	Two-component response regulator, AmiR/NasT family, consists of REC and RNA-binding antiterminator (ANTAR) domains	Transcription [K]	1.52
COG0339	Zn-dependent oligopeptidase, M3 family	Posttranslational modification, protein turnover, chaperones [O]	1.52
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.76
COG5588	Uncharacterized conserved protein, DUF1326 domain	Function unknown [S]	0.76
COG4330	Uncharacterized membrane protein, DUF1361 domain	Function unknown [S]	0.76
COG3791	Uncharacterized conserved protein	Function unknown [S]	0.76
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	0.76
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	0.76
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.76
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.76
COG1683	Uncharacterized conserved protein YbbK, DUF523 family	Function unknown [S]	0.76
COG1295	Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)	Function unknown [S]	0.76
COG1282	NAD/NADP transhydrogenase beta subunit	Energy production and conversion [C]	0.76
COG0472	UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase	Cell wall/membrane/envelope biogenesis [M]	0.76
COG0392	Predicted membrane flippase AglD2/YbhN, UPF0104 family	Cell wall/membrane/envelope biogenesis [M]	0.76

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	94.70 %
Unclassified	root	N/A	5.30 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	94.70 %
Unclassified	root	N/A	5.30 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	94.70 %
Unclassified	root	N/A	5.30 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	74.24 %
Unclassified	root	N/A	5.30 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.76 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	69.70 %
Unclassified	root	N/A	5.30 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.76 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.76 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	43.18 %
Unclassified	root	N/A	5.30 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	4.55 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.76 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.76 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	30.30 %
Unclassified	root	N/A	5.30 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.03 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2.27 %
unclassified Thermoleophilia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia	1.52 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	1.52 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.76 %
Thermoleophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales	0.76 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.76 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.76 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	30.30 %
Unclassified	root	N/A	5.30 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.03 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	1.52 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	1.52 %
unclassified Solirubrobacterales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales	0.76 %
Thermoleophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae	0.76 %
Solirubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae	0.76 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	0.76 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.76 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.76 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	30.30 %
Unclassified	root	N/A	5.30 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.03 %
Rhodococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus	1.52 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	1.52 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	0.76 %
unclassified Thermoleophilaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae	0.76 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	0.76 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	0.76 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.76 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.76 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	30.30 %
Unclassified	root	N/A	5.30 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.03 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	1.52 %
Thermoleophilaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	0.76 %
Solirubrobacter soli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	0.76 %
unclassified Rhodococcus	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → unclassified Rhodococcus	0.76 %
Rhodococcus pyridinivorans	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → Rhodococcus pyridinivorans	0.76 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	0.76 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	0.76 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.76 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.76 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	30.30 %
Unclassified	root	N/A	5.30 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.03 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	1.52 %
Rhodococcus sp. RD6.2	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → unclassified Rhodococcus → Rhodococcus sp. RD6.2	0.76 %
Thermoleophilaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	0.76 %
Solirubrobacter soli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	0.76 %
Rhodococcus pyridinivorans	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → Rhodococcus pyridinivorans	0.76 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	0.76 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	0.76 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.76 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.76 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000891\|JGI10214J12806_10345336	All Organisms → cellular organisms → Bacteria	1884	Open in IMG/M
3300000956\|JGI10216J12902_112500815	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1308	Open in IMG/M
3300002459\|JGI24751J29686_10069097	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	728	Open in IMG/M
3300002568\|C688J35102_118830308	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	602	Open in IMG/M
3300002908\|JGI25382J43887_10275157	All Organisms → cellular organisms → Bacteria	758	Open in IMG/M
3300004114\|Ga0062593_100759166	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	957	Open in IMG/M
3300004114\|Ga0062593_100903447	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → Rhodococcus pyridinivorans	893	Open in IMG/M
3300004156\|Ga0062589_100278129	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1277	Open in IMG/M
3300004156\|Ga0062589_101196624	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	727	Open in IMG/M
3300004156\|Ga0062589_102836854	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	506	Open in IMG/M
3300004157\|Ga0062590_100454677	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1073	Open in IMG/M
3300004157\|Ga0062590_100602342	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	966	Open in IMG/M
3300004479\|Ga0062595_100192151	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1251	Open in IMG/M
3300004479\|Ga0062595_100909676	All Organisms → cellular organisms → Bacteria	743	Open in IMG/M
3300004479\|Ga0062595_101208401	All Organisms → cellular organisms → Bacteria	672	Open in IMG/M
3300004480\|Ga0062592_100284087	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1240	Open in IMG/M
3300004643\|Ga0062591_100288291	All Organisms → cellular organisms → Bacteria	1283	Open in IMG/M
3300005186\|Ga0066676_10209736	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1256	Open in IMG/M
3300005329\|Ga0070683_100288893	All Organisms → cellular organisms → Bacteria	1560	Open in IMG/M
3300005332\|Ga0066388_105708338	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	630	Open in IMG/M
3300005355\|Ga0070671_101067896	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	709	Open in IMG/M
3300005435\|Ga0070714_100238028	All Organisms → cellular organisms → Bacteria	1679	Open in IMG/M
3300005437\|Ga0070710_10942420	All Organisms → cellular organisms → Bacteria	626	Open in IMG/M
3300005440\|Ga0070705_101343172	All Organisms → cellular organisms → Bacteria	594	Open in IMG/M
3300005451\|Ga0066681_10816406	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	562	Open in IMG/M
3300005543\|Ga0070672_100629139	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	936	Open in IMG/M
3300005548\|Ga0070665_101654821	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	648	Open in IMG/M
3300005555\|Ga0066692_10248557	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1122	Open in IMG/M
3300005563\|Ga0068855_102621957	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	500	Open in IMG/M
3300005564\|Ga0070664_101473889	All Organisms → cellular organisms → Bacteria	644	Open in IMG/M
3300005617\|Ga0068859_100194384	All Organisms → cellular organisms → Bacteria	2113	Open in IMG/M
3300005841\|Ga0068863_102276388	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	552	Open in IMG/M
3300006028\|Ga0070717_10049866	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3438	Open in IMG/M
3300006031\|Ga0066651_10500919	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	643	Open in IMG/M
3300006034\|Ga0066656_11056290	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	522	Open in IMG/M
3300006581\|Ga0074048_10032772	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	501	Open in IMG/M
3300006604\|Ga0074060_11686684	All Organisms → cellular organisms → Bacteria	1195	Open in IMG/M
3300006804\|Ga0079221_10924484	Not Available	644	Open in IMG/M
3300006844\|Ga0075428_101977431	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	605	Open in IMG/M
3300006852\|Ga0075433_10287385	All Organisms → cellular organisms → Bacteria	1456	Open in IMG/M
3300006853\|Ga0075420_100058001	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3436	Open in IMG/M
3300006871\|Ga0075434_100705330	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1026	Open in IMG/M
3300006969\|Ga0075419_10285779	All Organisms → cellular organisms → Bacteria	1109	Open in IMG/M
3300007076\|Ga0075435_101818059	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	535	Open in IMG/M
3300009093\|Ga0105240_10798672	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1022	Open in IMG/M
3300009093\|Ga0105240_12555696	Not Available	528	Open in IMG/M
3300009098\|Ga0105245_10173311	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2056	Open in IMG/M
3300009101\|Ga0105247_10014966	All Organisms → cellular organisms → Bacteria	4651	Open in IMG/M
3300009137\|Ga0066709_101414776	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1010	Open in IMG/M
3300009147\|Ga0114129_10250331	All Organisms → cellular organisms → Bacteria	2379	Open in IMG/M
3300009147\|Ga0114129_10862043	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1150	Open in IMG/M
3300009147\|Ga0114129_10939663	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1093	Open in IMG/M
3300009177\|Ga0105248_10599519	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1243	Open in IMG/M
3300009545\|Ga0105237_11074897	All Organisms → cellular organisms → Bacteria	811	Open in IMG/M
3300010038\|Ga0126315_10926158	Not Available	580	Open in IMG/M
3300010333\|Ga0134080_10660618	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	515	Open in IMG/M
3300010375\|Ga0105239_11099233	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	915	Open in IMG/M
3300011119\|Ga0105246_12584397	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	501	Open in IMG/M
3300011270\|Ga0137391_11339763	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	562	Open in IMG/M
3300011431\|Ga0137438_1044288	Not Available	1317	Open in IMG/M
3300012207\|Ga0137381_10943496	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	745	Open in IMG/M
3300012354\|Ga0137366_10020828	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	5114	Open in IMG/M
3300012354\|Ga0137366_11199977	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	516	Open in IMG/M
3300012913\|Ga0157298_10272279	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	585	Open in IMG/M
3300012914\|Ga0157297_10215140	All Organisms → cellular organisms → Bacteria → Terrabacteria group	674	Open in IMG/M
3300012917\|Ga0137395_10994878	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300012951\|Ga0164300_10577544	All Organisms → cellular organisms → Bacteria	659	Open in IMG/M
3300012955\|Ga0164298_10825711	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	666	Open in IMG/M
3300012957\|Ga0164303_10920975	All Organisms → cellular organisms → Bacteria	614	Open in IMG/M
3300012985\|Ga0164308_10930315	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	768	Open in IMG/M
3300012985\|Ga0164308_11812406	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	569	Open in IMG/M
3300012986\|Ga0164304_11122419	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	630	Open in IMG/M
3300012986\|Ga0164304_11314865	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	589	Open in IMG/M
3300012986\|Ga0164304_11548661	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	550	Open in IMG/M
3300012987\|Ga0164307_10697143	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	795	Open in IMG/M
3300012987\|Ga0164307_11527432	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	565	Open in IMG/M
3300012989\|Ga0164305_10551089	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	917	Open in IMG/M
3300012989\|Ga0164305_11256547	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	645	Open in IMG/M
3300012989\|Ga0164305_12090570	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	519	Open in IMG/M
3300013306\|Ga0163162_11569736	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	750	Open in IMG/M
3300013306\|Ga0163162_12787679	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → unclassified Rhodococcus → Rhodococcus sp. RD6.2	563	Open in IMG/M
3300014166\|Ga0134079_10738719	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	506	Open in IMG/M
3300015201\|Ga0173478_10156935	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	911	Open in IMG/M
3300015371\|Ga0132258_10589878	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	2789	Open in IMG/M
3300015371\|Ga0132258_10930204	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2195	Open in IMG/M
3300015371\|Ga0132258_11447357	All Organisms → cellular organisms → Bacteria	1735	Open in IMG/M
3300015371\|Ga0132258_12517930	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1287	Open in IMG/M
3300015371\|Ga0132258_12651020	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1251	Open in IMG/M
3300015371\|Ga0132258_12823166	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	1209	Open in IMG/M
3300015372\|Ga0132256_100197721	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2055	Open in IMG/M
3300015372\|Ga0132256_100267486	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1784	Open in IMG/M
3300015372\|Ga0132256_100949074	All Organisms → cellular organisms → Bacteria	976	Open in IMG/M
3300015372\|Ga0132256_102562565	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	611	Open in IMG/M
3300015372\|Ga0132256_102908932	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	576	Open in IMG/M
3300015372\|Ga0132256_103169487	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	553	Open in IMG/M
3300015373\|Ga0132257_100252344	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2106	Open in IMG/M
3300015373\|Ga0132257_100948673	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1080	Open in IMG/M
3300015373\|Ga0132257_101981292	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	751	Open in IMG/M
3300015373\|Ga0132257_104545638	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	505	Open in IMG/M
3300015374\|Ga0132255_103828919	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	639	Open in IMG/M
3300015374\|Ga0132255_104008427	All Organisms → cellular organisms → Bacteria	625	Open in IMG/M
3300015374\|Ga0132255_105118721	All Organisms → cellular organisms → Bacteria → Terrabacteria group	555	Open in IMG/M
3300015374\|Ga0132255_105942599	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	516	Open in IMG/M
3300017654\|Ga0134069_1362032	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	522	Open in IMG/M
3300018081\|Ga0184625_10614482	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	531	Open in IMG/M
3300018482\|Ga0066669_10523603	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1029	Open in IMG/M
3300021560\|Ga0126371_10432967	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1460	Open in IMG/M
3300022898\|Ga0247745_1056842	All Organisms → cellular organisms → Bacteria → Terrabacteria group	626	Open in IMG/M
3300025898\|Ga0207692_10287798	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	996	Open in IMG/M
3300025908\|Ga0207643_10503821	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	774	Open in IMG/M
3300025916\|Ga0207663_10594906	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	869	Open in IMG/M
3300025924\|Ga0207694_10158468	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1827	Open in IMG/M
3300025939\|Ga0207665_10452470	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	985	Open in IMG/M
3300025939\|Ga0207665_10533628	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	910	Open in IMG/M
3300025939\|Ga0207665_11144566	Not Available	621	Open in IMG/M
3300025940\|Ga0207691_10429204	Not Available	1126	Open in IMG/M
3300025941\|Ga0207711_10227790	Not Available	1706	Open in IMG/M
3300025944\|Ga0207661_10072333	All Organisms → cellular organisms → Bacteria	2821	Open in IMG/M
3300026089\|Ga0207648_10454482	All Organisms → cellular organisms → Bacteria	1167	Open in IMG/M
3300026095\|Ga0207676_12459022	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	518	Open in IMG/M
3300027909\|Ga0209382_10792932	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1009	Open in IMG/M
3300027909\|Ga0209382_10971899	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	888	Open in IMG/M
3300028381\|Ga0268264_10783717	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	951	Open in IMG/M
3300031170\|Ga0307498_10129467	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	814	Open in IMG/M
3300031474\|Ga0170818_110244290	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	587	Open in IMG/M
3300031547\|Ga0310887_10467596	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	754	Open in IMG/M
3300031765\|Ga0318554_10704019	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	567	Open in IMG/M
3300031908\|Ga0310900_10281686	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1213	Open in IMG/M
3300031912\|Ga0306921_10444272	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1511	Open in IMG/M
3300032010\|Ga0318569_10509532	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	561	Open in IMG/M
3300032054\|Ga0318570_10156752	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1020	Open in IMG/M
3300032180\|Ga0307471_104343956	All Organisms → cellular organisms → Bacteria	500	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	57.58%
Host-Associated	Host-Associated	42.42%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	56.06%
Plants	Host-Associated → Plants	42.42%
Aquatic	Environmental → Aquatic	1.52%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	56.06%
Rhizosphere	Host-Associated → Plants → Rhizosphere	24.24%
Rhizoplane	Host-Associated → Plants → Rhizoplane	18.18%
Sediment	Environmental → Aquatic → Sediment	1.52%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	46.21%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	15.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	10.61%
Loam	Environmental → Terrestrial → Soil → Loam	9.85%
Soil	Host-Associated → Plants → Rhizosphere → Soil	8.33%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.58%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.52%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.97%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	15.91%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	10.61%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	10.61%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.33%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	8.33%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.58%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.58%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.55%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.52%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.52%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.76%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.76%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	12.88%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	10.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	9.09%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	8.33%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.06%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.30%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	4.55%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.79%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.03%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.27%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.27%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.27%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.27%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.52%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.52%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.52%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.52%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.52%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.52%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.52%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.76%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.76%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.76%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.76%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.76%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.76%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.76%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.76%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.76%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.76%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.76%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.76%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.76%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002459	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6	Host-Associated	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006581	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006604	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011431	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT157_2	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012913	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S043-104R-2	Environmental	Open in IMG/M
3300012914	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015	Environmental	Open in IMG/M
3300015201	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017654	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022898	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S109-311C-5	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F060878

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10214J12806_103453361	3300000891	Soil	DAGKATLRDTVRASLPQGPFTLPARAWLALGTVPS*
JGI10216J12902_1125008153	3300000956	Soil	GPATGAFYASLDDAGKVTLRDTVRASLPQGPFTLPARAWLALGTVPG*
JGI24751J29686_100690971	3300002459	Corn, Switchgrass And Miscanthus Rhizosphere	GPATSAFYGSLDDAGKATLRDLVRASLPEGPFTLPGRAWLALGTTPGLAGRSR*
C688J35102_1188303082	3300002568	Soil	PATGAFYASLDDAGKARLRETLRASLPEGPFTLPARAWLALGIVPG*
JGI25382J43887_102751572	3300002908	Grasslands Soil	PFTGAAGPATGAFCASLDDAGKATLRDTVRASLPEGPFTLPARAWLALGTAPG*
Ga0062593_1007591662	3300004114	Soil	EPFTGAAGPATGAFYASLDAAGKATLRDTVRASLPQGPFTLPARAWLALGTVPS*
Ga0062593_1009034471	3300004114	Soil	AGPATGAFYASLDDAGKATLRDTVRASLPEGRFTLQARAWLALGTVPG*
Ga0062589_1002781291	3300004156	Soil	GAFYASLDDAGKATLRDTVRASLPEGPFTLPARAWLALGTVPG*
Ga0062589_1011966242	3300004156	Soil	GAAGPATGAFYASLDAAGKATLRDTVRASLPQGPFTLPARAWLALGTVPS*
Ga0062589_1028368542	3300004156	Soil	DDAGKATLRDTVRASLPEGPFTLPARAWLALGTVPPAEL*
Ga0062590_1004546771	3300004157	Soil	AAGPATGAFYASLDDAGKATLRDTVRASLPAGPFTLPARAWLALGTVPG*
Ga0062590_1006023423	3300004157	Soil	ASLDAAGKATLRDTVRASLPQGPFTLPARAWLALGTVPS*
Ga0062595_1001921511	3300004479	Soil	FYASLDDAGKATLRDTVRASLPEGPFTLPARAWLALGTKRSRTA*
Ga0062595_1009096761	3300004479	Soil	FYASLDDAGKATLRDTVRAALPEGPFTLPARAWLALGTVPG*
Ga0062595_1012084011	3300004479	Soil	PATGAFYASLDDAGKATLRETVRASLPEGPFTLPARAWLALGTVPG*
Ga0062592_1002840873	3300004480	Soil	GAFYASLDAAGKATLRDTVRASLPQGPFTLPARAWLALGTVPS*
Ga0062591_1002882913	3300004643	Soil	AFYASLDDAGKATLRDTVRAALPEGPFTLPARAWLALGTVPG*
Ga0066676_102097361	3300005186	Soil	AFYASLEDAGKATLRDTVRVSLPEGPFTLPARAWLALGTVPG*
Ga0070683_1002888931	3300005329	Corn Rhizosphere	AGPATGAFYASLDDAGKATLRDTVRAALPEGPFTLPARAWLALGTVPG*
Ga0066388_1057083381	3300005332	Tropical Forest Soil	GGAGPATGAFYASLDDAGKATLRDTVRASLPEGPFALPGRAWLALGTVPG*
Ga0070671_1010678961	3300005355	Switchgrass Rhizosphere	AFYASLDDAGKVTLRDTVRASLPDGPFTMPARAWLALGTVPG*
Ga0070714_1002380281	3300005435	Agricultural Soil	YASLDDAGRATLRDAVRASLPESPFTLPARAWLALGTVPG*
Ga0070710_109424202	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	ATGAFYASLDDAGKATLRDTVRVSLPEGPFTLPARAWLALGTVPG*
Ga0070705_1013431721	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	GAFYASLDDAGKASLRDTVRDSLPEGPFTLPARAWLALGTVPG*
Ga0066681_108164062	3300005451	Soil	ASLDDAGKATLRDTVRASLPEGPFTLPARAWLALGTVPG*
Ga0070672_1006291394	3300005543	Miscanthus Rhizosphere	SLDDAGKATLRDLVRASLPEGPFTLPGRAWLALGTTPGLAGRSR*
Ga0070665_1016548211	3300005548	Switchgrass Rhizosphere	AGPATGAFYASLDDAGKATLRDTVRASLPKGPFTLPARAWLALGTVPG*
Ga0066692_102485572	3300005555	Soil	AGKATLRDTVRASLPEGPFTLPARAWLALGTAPG*
Ga0068855_1026219571	3300005563	Corn Rhizosphere	GGGGPASGAFYASLDDAGRATLRDAVRASLPESPFTLPARAWLALGTVPA*
Ga0070664_1014738891	3300005564	Corn Rhizosphere	GSGGPSTGAFYDSLDDAGKATLRETVRASLPEGPFTLPARAWLALGTVPS*
Ga0068859_1001943841	3300005617	Switchgrass Rhizosphere	ATGAFYASLDDAGKASLRDTVRDSLPEGPFTLPARAWLALGTVPG*
Ga0068863_1022763881	3300005841	Switchgrass Rhizosphere	FYASLDDAGKATLRDTVRASLPEGPFTLPARAWLALGTVPG*
Ga0070717_100498668	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	DDAGKATLRDTVRASLPEGPFTLSARAWLALGTVPG*
Ga0066651_105009191	3300006031	Soil	AFYASLDDAGKATLRDTVRASLPEGPFTLPARAWLALGTAPG*
Ga0066656_110562902	3300006034	Soil	AAGPATGAFYASLDDAGKVTLRDTVRASLPQGPFTLPARAWLALGTVPG*
Ga0074048_100327721	3300006581	Soil	SLDDAGKATLRDTVRASLPEGPFTLPARAWLALGTVPG*
Ga0074060_116866843	3300006604	Soil	TGAFYASLDDAGKATLRDTVRASLPEGPFTLPARAWLALGTVPG*
Ga0079221_109244842	3300006804	Agricultural Soil	SGGPSTGAFYASLDDAGKATLRDTVRASLPEGPFTLPARAWLALGTVPGFSA*
Ga0075428_1019774311	3300006844	Populus Rhizosphere	AFYASLDDAGKATLRDTVRASLPEGPFTLPARAWLALGTVPGFKP*
Ga0075433_102873854	3300006852	Populus Rhizosphere	SLDDAGKATLRDTVRASLPEAPFTLPARAWLALGTVVG*
Ga0075420_1000580016	3300006853	Populus Rhizosphere	LDDAGKATLRDTVRASLPQGPFTLPARAWIALGTVPG*
Ga0075434_1007053301	3300006871	Populus Rhizosphere	GAAGPATGAFYASLDDAGKATLRDTVRASLPQGPFTLPARAWLALGTVPG*
Ga0075419_102857791	3300006969	Populus Rhizosphere	ASLDDAGKATLRDTVRASLPQGPFTLPARAWIALGTVPG*
Ga0075435_1018180592	3300007076	Populus Rhizosphere	SLDDAGKATLRDTVRISLPEGPFTLPARAWLALGTVTG*
Ga0105240_107986721	3300009093	Corn Rhizosphere	DAGKATLRDLVRASLPEGPFTLPGRAWLALGTTPGLAGRSR*
Ga0105240_125556961	3300009093	Corn Rhizosphere	TGAFYDSLDDAGKATLRETVRASLPEGPFTLPARAWLALGTVPS*
Ga0105245_101733114	3300009098	Miscanthus Rhizosphere	PFTGGGGPASGAFYDSLDDAGKATLRDSVRASLPEAPFTLPARAWLALGTVPG*
Ga0105247_100149668	3300009101	Switchgrass Rhizosphere	LDDAGKASLRDTVRDSLPEGPFTLPARAWLALGTVPG*
Ga0066709_1014147761	3300009137	Grasslands Soil	TGAAGPATGAFYASLDDAGKATLRNTVRASLPEGPFTLPARAWLALGTVPGL*
Ga0114129_102503311	3300009147	Populus Rhizosphere	SLDDAGKATLRDTVRASLPEGPFTLRARAWLALGTVPG*
Ga0114129_108620431	3300009147	Populus Rhizosphere	DDAGKAALRDTARASLPEGPFTLPARAWLALGTVPG*
Ga0114129_109396631	3300009147	Populus Rhizosphere	DDPGKATMRDTVRASLPEGPFTLPARAWLALGTVPG*
Ga0105248_105995191	3300009177	Switchgrass Rhizosphere	GAFYDSLDDAGKATLRETVRASLPEGPFTLPARAWLALGTVPS*
Ga0105237_110748971	3300009545	Corn Rhizosphere	AGKATLRETVRASLPEGPFTLPARAWLALGTVPS*
Ga0126315_109261583	3300010038	Serpentine Soil	LDDAGKATLRDTVRSSLPEGPFTLPARAWLALGTAPG*
Ga0134080_106606181	3300010333	Grasslands Soil	GAFYASLDDAGKATLRDTVRASLPEGPFTLPARAWLALGTAPG*
Ga0105239_110992331	3300010375	Corn Rhizosphere	PATGAFYASLDDAGKATLRDGVRGSLPEGPFTLPARAWLAIGTVPG*
Ga0105246_125843971	3300011119	Miscanthus Rhizosphere	GAFYASLEDAGKATLRDTVRASLPEGPFTLPARAWLALGTVPG*
Ga0137391_113397631	3300011270	Vadose Zone Soil	EPFTGAAGPATGAFYASLDDAGKATLRDTVRASLPEGPFTLPARAWLALGTVPG*
Ga0137438_10442882	3300011431	Soil	DDAGKATLRDTVRASVPEGPFTLEARAWLALGTVPH*
Ga0137381_109434962	3300012207	Vadose Zone Soil	DDAGKATLRDTVRASLPEGPFTLPARAWLALGTAPG*
Ga0137366_100208288	3300012354	Vadose Zone Soil	TGAAGPATGAFYASLDDAGKATLRDTVRASLPEGPFTLPARAWLALGTVPG*
Ga0137366_111999772	3300012354	Vadose Zone Soil	GAFYASLDDAGKATLRDTVRASLPEGPFTLPARAWLALGTAPA*
Ga0157298_102722791	3300012913	Soil	DDAGKVTLRDTVRASLPDGPFTMPARAWLALGTVPG*
Ga0157297_102151401	3300012914	Soil	PATGAFYASLDDADKATLRDTVRASLPEGPFTLPARAWLALGTVPG*
Ga0137395_109948781	3300012917	Vadose Zone Soil	TGAAGPATGAFYASLDDAGKSTLRDTVRASLPEVPFTLPARAWLALGTVPG*
Ga0164300_105775441	3300012951	Soil	SLDDAGKETLRETVRAFLPDGPFTLPARAWLALGSVAR*
Ga0164298_108257112	3300012955	Soil	WKPFTGAAGPATGAFYASLDHAGKATLRDTVRASLPEGPFTLPARAWLALGTVPG*
Ga0164303_109209752	3300012957	Soil	YASLDDAGKETLRETVRAFLPDGPFTLPARAWLALGTVAR*
Ga0164308_109303153	3300012985	Soil	EPFTGAAGPATGAFYASLDDAGKATLRHTVRASLPEGPFTLPARAWLALGTVPG*
Ga0164308_118124061	3300012985	Soil	DSLDDAGKATLRDSVRDSLPEAPFTLPARAWLALGTVPG*
Ga0164304_111224192	3300012986	Soil	YDSLDDAGKATLRDSVRDSLPEAPFTLPARAWLALGTVPG*
Ga0164304_113148652	3300012986	Soil	ASLDDAGKATLRDTVRASLPEGPFTLPARAWLALGTVSG*
Ga0164304_115486613	3300012986	Soil	PATGAFYASLDDAGKATLRDSVRASLPEAPFTLPARAWLALGSVPG*
Ga0164307_106971432	3300012987	Soil	FYAGLDDANKAVLRDTVRTSLPEGPFTLPARAWLAIGTVPG*
Ga0164307_115274321	3300012987	Soil	AGPATGAFYASLDDDDKATLRDTVHASLPEGPFTLPARAWLALGTVPG*
Ga0164305_105510891	3300012989	Soil	PFTGGGGPASGAFYDSLDDAGKATLRDTVRASLPEAPFTLPARAWLALGTVPG*
Ga0164305_112565473	3300012989	Soil	AGPATGAFYASLDDGGKATLRDTVRASLPEGPFTLPARAWLALGTVPERR*
Ga0164305_120905701	3300012989	Soil	LDDAGKATLRDTVRASLPEGPFTLPARAWLALGTVPG*
Ga0163162_115697361	3300013306	Switchgrass Rhizosphere	PATGAFYASLDDAGQATLRDTVRAALPEGPFTLPARAWLALGTVPG*
Ga0163162_127876791	3300013306	Switchgrass Rhizosphere	PFTGAAGPATGAFYASLDDAGQATLRDTVRASLPEGPFTLPARAWLALGTAPG*
Ga0134079_107387191	3300014166	Grasslands Soil	DDAGKATLRDTVRASLPEGPFTLPARAWLAVGTVPG*
Ga0173478_101569353	3300015201	Soil	DARRATGAFHASLDDAGKATLRDTVRASLPEGPFTLPARAWLALGTVPG*
Ga0132258_105898784	3300015371	Arabidopsis Rhizosphere	AGKATLRDTVRASLPEGPFTLPARAWLALGTAAG*
Ga0132258_109302041	3300015371	Arabidopsis Rhizosphere	DDAGKATLRDTVRSSLPAGAFTLTARAWLALGTVPG*
Ga0132258_114473571	3300015371	Arabidopsis Rhizosphere	SLDDAGKATLRDTVRASLPEGPFTLPAPAWLALGTVPGK*
Ga0132258_125179301	3300015371	Arabidopsis Rhizosphere	SGAFYASLDDAGKATLRDTVRASLPEGPFTLPARAWLALGTVPG*
Ga0132258_126510201	3300015371	Arabidopsis Rhizosphere	GPATGAFYASLDDAGKATLRDTVRASLPEGPFTLPARAWLALGTVPG*
Ga0132258_128231662	3300015371	Arabidopsis Rhizosphere	AALIGMLVAAATGAFYASLDDAGKATLRDTVRASLPEAPFTLPARAWLALGTVPG*
Ga0132256_1001977214	3300015372	Arabidopsis Rhizosphere	ATGAFYASLDDAGKATLRDTARASLPQGPFTLPARAWLALGTVPG*
Ga0132256_1002674861	3300015372	Arabidopsis Rhizosphere	FYASLDNVGKATLRDTVRASLPEGPFTLPARAWLALGTVPG*
Ga0132256_1009490741	3300015372	Arabidopsis Rhizosphere	AGPATGAFYASLDDAGKATLRDTVRASLPEGPFTLPARAWLALGTVPG*
Ga0132256_1025625652	3300015372	Arabidopsis Rhizosphere	YASLDDAGKAILRDTVRASLPEAPFTLSARAWLALGTVPGYQGLS*
Ga0132256_1029089321	3300015372	Arabidopsis Rhizosphere	AFYASLDDPGKATLRDTVRASLPEGPFTLPARAWLALGTVPG*
Ga0132256_1031694872	3300015372	Arabidopsis Rhizosphere	LDDAGKATLRDTVRDSLPEGPFTLPARAWLALGTVPG*
Ga0132257_1002523441	3300015373	Arabidopsis Rhizosphere	SLDDAGKATLRDSVRASLPEGAFTLPARAWLALGTVPG*
Ga0132257_1009486731	3300015373	Arabidopsis Rhizosphere	PFTGAAGPATGAFYASLDDAGKATLRDTVRASLPEGPFTLPARAWLALGTVPG*
Ga0132257_1019812921	3300015373	Arabidopsis Rhizosphere	LDDSGKATLRDTVRASLPEGPFTLPARAWLALGTVPG*
Ga0132257_1045456381	3300015373	Arabidopsis Rhizosphere	PASGAFYASLDDAGKATLRDTVRASLPDAPFTLQGRAWLALGVVPA*
Ga0132255_1038289192	3300015374	Arabidopsis Rhizosphere	FTGAAGPATGAFYASLDDAGKATLRDTVRASLPEGPFTLPARAWLALGTVPG*
Ga0132255_1040084272	3300015374	Arabidopsis Rhizosphere	YASLDDAGKATLRDTVRASLPEGPFTLPARAWLALGTVPG*
Ga0132255_1051187211	3300015374	Arabidopsis Rhizosphere	AGKATLRDTVRASLPEGPFTLPARAWLALGTIPG*
Ga0132255_1059425992	3300015374	Arabidopsis Rhizosphere	MDEIALRDMVRASLPEGSFTLSARAWLALGTVPG*
Ga0134069_13620322	3300017654	Grasslands Soil	PFTGAAGPATGAFYASLDDAGKVTLRDAVRASLPEGPFTLPARAWLALGTVPG
Ga0184625_106144821	3300018081	Groundwater Sediment	ATGAFYASLDDAGKATLRDTVCASLPEGPFTLPARAWLALGTVPG
Ga0066669_105236032	3300018482	Grasslands Soil	DDAGKVTLRDAVRASLPEGPFTLPARAWLALGTVPG
Ga0126371_104329673	3300021560	Tropical Forest Soil	YSSLDDAGKATLRDNVRASLPEGPFTLPARAWLALGTVPG
Ga0247745_10568422	3300022898	Soil	FYASLDDAGKATLRDTVRASLPEGPFTLPARAWLALGTVPG
Ga0207692_102877983	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	AFYASLDDAGKATLRDTVRASLPEGPFTLPARAWLALGTVPERR
Ga0207643_105038212	3300025908	Miscanthus Rhizosphere	EPFTAGGGPSTGAFYASLDHAGKATLRDTVRASLPEGAFTLPARAWLALGTVPG
Ga0207663_105949061	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	AAGPATGAFYASLDDAGKASLRDTVRDSLPEGPFTLPARAWLALGTVPG
Ga0207694_101584685	3300025924	Corn Rhizosphere	PFTGGGGPATSAFYGSLDDAGKATLRDLVRASLPEGPFTLPGRAWLALGTTPGLAGRSR
Ga0207665_104524701	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	TGAAGPATGAFYASLDDAGKATLRDTVRASLPEGPFTLPARAWLALGTVPERR
Ga0207665_105336281	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	DAGKATLRHTVRASLPKGPFTLPARAWLALGTVPG
Ga0207665_111445662	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	SLDDAGKATLRDTVRASLPEGPFTLPARAWLALGTVPGFSA
Ga0207691_104292044	3300025940	Miscanthus Rhizosphere	TSAFYGSLDDAGKATLRDLVRASLPEGPFTLPGRAWLALGTTPGLAGRSR
Ga0207711_102277904	3300025941	Switchgrass Rhizosphere	EPFTGAAGPATGAFYASLDDAGKATLRDTVRASLPEGPFTLPARAWLALGTVPS
Ga0207661_100723334	3300025944	Corn Rhizosphere	FYASLDDAGKATLRDTVRAALPEGPFTLPARAWLALGTVPG
Ga0207648_104544823	3300026089	Miscanthus Rhizosphere	PFTGGAGPASGAFYASLEDAGKATLRDTVRASLPEGPFTLPARAWLALGTVPG
Ga0207676_124590221	3300026095	Switchgrass Rhizosphere	ATAPFYASRDDAGKATLRDTVRASLPEGPFTLPARAWLALGTVPG
Ga0209382_107929323	3300027909	Populus Rhizosphere	FTGAAGPATGAFYASLDDAGKATLRDTVRASLPQGPFTLPARAWIALGTVPG
Ga0209382_109718992	3300027909	Populus Rhizosphere	FTGAAGPATGAFYASLDDAGKATLRDTVRASLPEGPFTLPARAWLALGTVPG
Ga0268264_107837173	3300028381	Switchgrass Rhizosphere	ATGAFYASLDDAGKATLRDTVRASLPEGPFTLPARAWLALGTVPG
Ga0307498_101294671	3300031170	Soil	AGPATGAFYASLDDAGRATLRDIVRASLPEGPFTLPARAWLALGAVPG
Ga0170818_1102442901	3300031474	Forest Soil	IGAFYASLDDAGKATLRDSVRASLPEGPFTLPARAWLALGTVPG
Ga0310887_104675962	3300031547	Soil	GAFYASLDDAGKATLRDTVRASLPEGPFTLPARAWLALGTVPG
Ga0318554_107040193	3300031765	Soil	FYDSLDDAGKATLRDSVRASLPEGPFTLPARAWLALGTVPG
Ga0310900_102816861	3300031908	Soil	SLDDAGKATLRDTVRASLPERPFTLPARAWLALGTVPG
Ga0306921_104442721	3300031912	Soil	GPATGAFYASLDDAGKATLRAKVHASLPEGSFTLQARAWLALGSAPG
Ga0318569_105095322	3300032010	Soil	STGAFYASLDDAGKTTLRDTVRASLPEGPFTLPARAWLALGTAPG
Ga0318570_101567521	3300032054	Soil	ASLDDAGKATLRAKVHASLPEGSFTLQARAWLALGSAPG
Ga0307471_1043439562	3300032180	Hardwood Forest Soil	PFTGAAGPATGAFYASHDDAGKATLRDTVRISLPEGPFTLPARAWLALGTVTG

Hidden Markov Model


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