Metagenome / Metatranscriptome Family F060875

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F060875
Family Type	Metagenome / Metatranscriptome
Number of Sequences	132
Average Sequence Length	38 residues
Representative Sequence	DTSVRRWQKLTGGSARHAASGRSFDDLAREAEVANAA
Number of Associated Samples	110
Number of Associated Scaffolds	132

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.76 %
% of genes near scaffold ends (potentially truncated)	96.21 %
% of genes from short scaffolds (< 2000 bps)	95.45 %
Associated GOLD sequencing projects	105
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (98.485 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (31.818 % of family members)
Environment Ontology (ENVO)	Unclassified (31.818 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (57.576 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 33.85% β-sheet: 3.08% Coil/Unstructured: 63.08%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.47
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.47
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 132 Family Scaffolds
PF03237	Terminase_6N	6.06
PF16450	Prot_ATP_ID_OB	1.52
PF13408	Zn_ribbon_recom	0.76
PF14759	Reductase_C	0.76

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.48 %
Mycobacterium avium subsp. paratuberculosis	subspecies	Mycobacterium avium subsp. paratuberculosis	0.76 %
Unclassified	root	N/A	0.76 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.48 %
Mycobacterium avium subsp. paratuberculosis K-10	strain	Mycobacterium avium subsp. paratuberculosis → Mycobacterium avium subsp. paratuberculosis K-10	0.76 %
Unclassified	root	N/A	0.76 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.48 %
Mycobacterium avium subsp. paratuberculosis K-10	strain	Mycobacterium avium subsp. paratuberculosis → Mycobacterium avium subsp. paratuberculosis K-10	0.76 %
Unclassified	root	N/A	0.76 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	51.52 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	2.27 %
Mycobacterium avium subsp. paratuberculosis K-10	strain	Mycobacterium avium subsp. paratuberculosis → Mycobacterium avium subsp. paratuberculosis K-10	0.76 %
Unclassified	root	N/A	0.76 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	18.94 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	18.18 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2.27 %
Mycobacterium avium subsp. paratuberculosis K-10	strain	Mycobacterium avium subsp. paratuberculosis → Mycobacterium avium subsp. paratuberculosis K-10	0.76 %
Unclassified	root	N/A	0.76 %

Name	Rank	Taxonomy	Distribution
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	10.61 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3.03 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	2.27 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.76 %
Mycobacterium avium subsp. paratuberculosis K-10	strain	Mycobacterium avium subsp. paratuberculosis → Mycobacterium avium subsp. paratuberculosis K-10	0.76 %
Unclassified	root	N/A	0.76 %

Name	Rank	Taxonomy	Distribution
Oxalobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	7.58 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3.03 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2.27 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.76 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.76 %
Mycobacterium avium subsp. paratuberculosis K-10	strain	Mycobacterium avium subsp. paratuberculosis → Mycobacterium avium subsp. paratuberculosis K-10	0.76 %
Unclassified	root	N/A	0.76 %

Name	Rank	Taxonomy	Distribution
Collimonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Collimonas	7.58 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3.03 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2.27 %
Polynucleobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Polynucleobacter	0.76 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.76 %
Mycobacterium avium subsp. paratuberculosis K-10	strain	Mycobacterium avium subsp. paratuberculosis → Mycobacterium avium subsp. paratuberculosis K-10	0.76 %
Unclassified	root	N/A	0.76 %

Name	Rank	Taxonomy	Distribution
unclassified Collimonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Collimonas → unclassified Collimonas	6.82 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3.03 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2.27 %
unclassified Polynucleobacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Polynucleobacter → unclassified Polynucleobacter	0.76 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.76 %
Mycobacterium avium subsp. paratuberculosis K-10	strain	Mycobacterium avium subsp. paratuberculosis → Mycobacterium avium subsp. paratuberculosis K-10	0.76 %
Unclassified	root	N/A	0.76 %

Name	Rank	Taxonomy	Distribution
Collimonas sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Collimonas → unclassified Collimonas → Collimonas sp.	3.79 %
Collimonas sp. OK307	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Collimonas → unclassified Collimonas → Collimonas sp. OK307	3.03 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3.03 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2.27 %
Polynucleobacter sp. JS-Safj-400b-B2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Polynucleobacter → unclassified Polynucleobacter → Polynucleobacter sp. JS-Safj-400b-B2	0.76 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.76 %
Mycobacterium avium subsp. paratuberculosis K-10	strain	Mycobacterium avium subsp. paratuberculosis → Mycobacterium avium subsp. paratuberculosis K-10	0.76 %
Unclassified	root	N/A	0.76 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001081\|JGI12662J13196_1018617	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	574	Open in IMG/M
3300001661\|JGI12053J15887_10407564	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	653	Open in IMG/M
3300001867\|JGI12627J18819_10413938	All Organisms → cellular organisms → Bacteria	549	Open in IMG/M
3300002245\|JGIcombinedJ26739_100766584	All Organisms → cellular organisms → Bacteria → Proteobacteria	844	Open in IMG/M
3300004081\|Ga0063454_100698951	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	763	Open in IMG/M
3300004091\|Ga0062387_101452462	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300005179\|Ga0066684_11092712	All Organisms → cellular organisms → Bacteria → Proteobacteria	510	Open in IMG/M
3300005180\|Ga0066685_11012504	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	548	Open in IMG/M
3300005184\|Ga0066671_11010619	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	523	Open in IMG/M
3300005437\|Ga0070710_10553611	All Organisms → cellular organisms → Bacteria	795	Open in IMG/M
3300005554\|Ga0066661_10860758	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	530	Open in IMG/M
3300005555\|Ga0066692_10719766	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	618	Open in IMG/M
3300005560\|Ga0066670_10567667	All Organisms → cellular organisms → Bacteria	693	Open in IMG/M
3300005561\|Ga0066699_10435581	All Organisms → cellular organisms → Bacteria → Proteobacteria	938	Open in IMG/M
3300005610\|Ga0070763_10427296	All Organisms → cellular organisms → Bacteria	749	Open in IMG/M
3300005764\|Ga0066903_106341468	All Organisms → cellular organisms → Bacteria → Proteobacteria	617	Open in IMG/M
3300006606\|Ga0074062_10010815	All Organisms → cellular organisms → Bacteria	574	Open in IMG/M
3300006800\|Ga0066660_11335817	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	561	Open in IMG/M
3300009038\|Ga0099829_10467955	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1045	Open in IMG/M
3300009137\|Ga0066709_101941886	All Organisms → cellular organisms → Bacteria → Proteobacteria	817	Open in IMG/M
3300009143\|Ga0099792_10042501	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Collimonas → unclassified Collimonas → Collimonas sp.	2175	Open in IMG/M
3300009162\|Ga0075423_11074192	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Collimonas → unclassified Collimonas → Collimonas sp.	857	Open in IMG/M
3300009792\|Ga0126374_11584636	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300010043\|Ga0126380_10265547	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Collimonas → unclassified Collimonas → Collimonas sp.	1198	Open in IMG/M
3300010048\|Ga0126373_12288804	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	601	Open in IMG/M
3300010159\|Ga0099796_10049501	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Collimonas → unclassified Collimonas → Collimonas sp.	1453	Open in IMG/M
3300010343\|Ga0074044_10793014	All Organisms → cellular organisms → Bacteria	619	Open in IMG/M
3300010358\|Ga0126370_11239028	All Organisms → cellular organisms → Bacteria → Proteobacteria	696	Open in IMG/M
3300010360\|Ga0126372_10623022	All Organisms → cellular organisms → Bacteria → Proteobacteria	1039	Open in IMG/M
3300010361\|Ga0126378_11058356	All Organisms → cellular organisms → Bacteria	914	Open in IMG/M
3300010361\|Ga0126378_12938896	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300010366\|Ga0126379_13478272	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300010376\|Ga0126381_101683590	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	916	Open in IMG/M
3300010376\|Ga0126381_102279510	All Organisms → cellular organisms → Bacteria → Proteobacteria	778	Open in IMG/M
3300010376\|Ga0126381_102834472	All Organisms → cellular organisms → Bacteria → Proteobacteria	691	Open in IMG/M
3300010376\|Ga0126381_104991811	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300010396\|Ga0134126_12106287	All Organisms → cellular organisms → Bacteria	616	Open in IMG/M
3300011120\|Ga0150983_10681299	All Organisms → cellular organisms → Bacteria	896	Open in IMG/M
3300011120\|Ga0150983_13555811	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300011270\|Ga0137391_10824240	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	763	Open in IMG/M
3300011270\|Ga0137391_11048912	All Organisms → cellular organisms → Bacteria	662	Open in IMG/M
3300012181\|Ga0153922_1080203	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	733	Open in IMG/M
3300012203\|Ga0137399_11574517	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300012285\|Ga0137370_10325028	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Collimonas → unclassified Collimonas → Collimonas sp.	922	Open in IMG/M
3300012361\|Ga0137360_10511399	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1023	Open in IMG/M
3300012361\|Ga0137360_10832002	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	795	Open in IMG/M
3300012683\|Ga0137398_11205767	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300012922\|Ga0137394_11558866	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	518	Open in IMG/M
3300012927\|Ga0137416_10856545	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	806	Open in IMG/M
3300012927\|Ga0137416_11484506	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	615	Open in IMG/M
3300012930\|Ga0137407_11836814	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300012948\|Ga0126375_10841661	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	731	Open in IMG/M
3300012971\|Ga0126369_10132160	All Organisms → cellular organisms → Bacteria	2318	Open in IMG/M
3300012971\|Ga0126369_11436225	All Organisms → cellular organisms → Bacteria	780	Open in IMG/M
3300012971\|Ga0126369_11520452	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	759	Open in IMG/M
3300012971\|Ga0126369_11716981	All Organisms → cellular organisms → Bacteria	717	Open in IMG/M
3300012971\|Ga0126369_12033806	All Organisms → cellular organisms → Bacteria	662	Open in IMG/M
3300012988\|Ga0164306_10662107	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Collimonas → unclassified Collimonas → Collimonas sp. OK307	825	Open in IMG/M
3300016270\|Ga0182036_11265751	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	615	Open in IMG/M
3300016387\|Ga0182040_11719392	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300016422\|Ga0182039_10813934	All Organisms → cellular organisms → Bacteria	830	Open in IMG/M
3300018006\|Ga0187804_10507398	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Collimonas → unclassified Collimonas → Collimonas sp. OK307	542	Open in IMG/M
3300018468\|Ga0066662_10180101	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Collimonas	1643	Open in IMG/M
3300020579\|Ga0210407_10833427	All Organisms → cellular organisms → Bacteria → Proteobacteria	710	Open in IMG/M
3300020580\|Ga0210403_11033641	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	641	Open in IMG/M
3300020581\|Ga0210399_10214790	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Polynucleobacter → unclassified Polynucleobacter → Polynucleobacter sp. JS-Safj-400b-B2	1601	Open in IMG/M
3300020581\|Ga0210399_10437681	All Organisms → cellular organisms → Bacteria	1089	Open in IMG/M
3300020581\|Ga0210399_10538009	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	969	Open in IMG/M
3300021088\|Ga0210404_10846973	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	523	Open in IMG/M
3300021170\|Ga0210400_10961685	All Organisms → cellular organisms → Bacteria	695	Open in IMG/M
3300021178\|Ga0210408_11277662	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300021405\|Ga0210387_11757679	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300021432\|Ga0210384_11656412	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300021439\|Ga0213879_10187809	All Organisms → cellular organisms → Bacteria	611	Open in IMG/M
3300021478\|Ga0210402_10398118	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1278	Open in IMG/M
3300021478\|Ga0210402_11572670	All Organisms → cellular organisms → Bacteria	584	Open in IMG/M
3300021559\|Ga0210409_11402478	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	574	Open in IMG/M
3300025898\|Ga0207692_10277393	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1013	Open in IMG/M
3300025905\|Ga0207685_10767427	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300025915\|Ga0207693_10516156	All Organisms → cellular organisms → Bacteria	932	Open in IMG/M
3300026359\|Ga0257163_1042524	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	721	Open in IMG/M
3300026527\|Ga0209059_1309494	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300027076\|Ga0208860_1029356	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300027326\|Ga0209731_1005193	Mycobacterium avium subsp. paratuberculosis → Mycobacterium avium subsp. paratuberculosis K-10	1606	Open in IMG/M
3300027381\|Ga0208983_1055604	All Organisms → cellular organisms → Bacteria	761	Open in IMG/M
3300027502\|Ga0209622_1062466	All Organisms → cellular organisms → Bacteria	678	Open in IMG/M
3300027583\|Ga0209527_1083004	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	720	Open in IMG/M
3300027643\|Ga0209076_1104799	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	802	Open in IMG/M
3300027651\|Ga0209217_1055487	All Organisms → cellular organisms → Bacteria → Proteobacteria	1186	Open in IMG/M
3300027701\|Ga0209447_10074020	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	934	Open in IMG/M
3300027812\|Ga0209656_10385509	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	631	Open in IMG/M
3300027874\|Ga0209465_10018999	All Organisms → cellular organisms → Bacteria → Proteobacteria	3153	Open in IMG/M
3300027903\|Ga0209488_11011109	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300027908\|Ga0209006_11395258	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300031057\|Ga0170834_101611819	All Organisms → cellular organisms → Bacteria	500	Open in IMG/M
3300031122\|Ga0170822_13288546	All Organisms → cellular organisms → Bacteria	1094	Open in IMG/M
3300031128\|Ga0170823_12880419	All Organisms → cellular organisms → Bacteria	593	Open in IMG/M
3300031545\|Ga0318541_10717837	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300031561\|Ga0318528_10467671	All Organisms → cellular organisms → Bacteria	677	Open in IMG/M
3300031573\|Ga0310915_10526705	All Organisms → cellular organisms → Bacteria	839	Open in IMG/M
3300031680\|Ga0318574_10316417	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	908	Open in IMG/M
3300031682\|Ga0318560_10442359	All Organisms → cellular organisms → Bacteria → Proteobacteria	704	Open in IMG/M
3300031724\|Ga0318500_10236230	All Organisms → cellular organisms → Bacteria	883	Open in IMG/M
3300031744\|Ga0306918_10309157	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1219	Open in IMG/M
3300031748\|Ga0318492_10162709	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1130	Open in IMG/M
3300031748\|Ga0318492_10483478	All Organisms → cellular organisms → Bacteria	656	Open in IMG/M
3300031751\|Ga0318494_10308044	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	914	Open in IMG/M
3300031770\|Ga0318521_10271709	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	993	Open in IMG/M
3300031770\|Ga0318521_10330116	All Organisms → cellular organisms → Bacteria → Proteobacteria	901	Open in IMG/M
3300031771\|Ga0318546_10371311	All Organisms → cellular organisms → Bacteria	997	Open in IMG/M
3300031771\|Ga0318546_10532466	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Collimonas → unclassified Collimonas → Collimonas sp. OK307	825	Open in IMG/M
3300031797\|Ga0318550_10587300	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300031798\|Ga0318523_10655874	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	516	Open in IMG/M
3300031832\|Ga0318499_10363948	All Organisms → cellular organisms → Bacteria	555	Open in IMG/M
3300031835\|Ga0318517_10183519	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Collimonas → unclassified Collimonas → Collimonas sp. OK307	941	Open in IMG/M
3300031912\|Ga0306921_11962836	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	624	Open in IMG/M
3300031941\|Ga0310912_10903963	All Organisms → cellular organisms → Bacteria	679	Open in IMG/M
3300031942\|Ga0310916_10197728	All Organisms → cellular organisms → Bacteria	1681	Open in IMG/M
3300031946\|Ga0310910_10279077	All Organisms → cellular organisms → Bacteria → Proteobacteria	1311	Open in IMG/M
3300031946\|Ga0310910_10910794	Not Available	689	Open in IMG/M
3300031946\|Ga0310910_11258467	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	573	Open in IMG/M
3300031962\|Ga0307479_11275784	All Organisms → cellular organisms → Bacteria → Proteobacteria	696	Open in IMG/M
3300032039\|Ga0318559_10206238	All Organisms → cellular organisms → Bacteria	904	Open in IMG/M
3300032041\|Ga0318549_10169470	All Organisms → cellular organisms → Bacteria	976	Open in IMG/M
3300032051\|Ga0318532_10349173	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300032059\|Ga0318533_10757577	All Organisms → cellular organisms → Bacteria → Proteobacteria	713	Open in IMG/M
3300032068\|Ga0318553_10721150	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	521	Open in IMG/M
3300032076\|Ga0306924_10142860	All Organisms → cellular organisms → Bacteria → Proteobacteria	2737	Open in IMG/M
3300032076\|Ga0306924_11374332	All Organisms → cellular organisms → Bacteria	755	Open in IMG/M
3300032261\|Ga0306920_100293937	All Organisms → cellular organisms → Bacteria → Proteobacteria	2420	Open in IMG/M
3300032261\|Ga0306920_103644781	All Organisms → cellular organisms → Bacteria	566	Open in IMG/M
3300033289\|Ga0310914_10092289	All Organisms → cellular organisms → Bacteria	2589	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.48%
Host-Associated	Host-Associated	1.52%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.45%
Aquatic	Environmental → Aquatic	3.03%
Plants	Host-Associated → Plants	0.76%
Fungi	Host-Associated → Fungi	0.76%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	95.45%
Freshwater	Environmental → Aquatic → Freshwater	3.03%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.76%
Mycelium	Host-Associated → Fungi → Mycelium	0.76%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	78.79%
Loam	Environmental → Terrestrial → Soil → Loam	15.91%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.03%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.76%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.76%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	41.67%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.79%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	12.12%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.33%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.03%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.27%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.76%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.76%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.76%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.76%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	31.82%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	13.64%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	12.12%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	9.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.82%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.03%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.27%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.27%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.52%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.52%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.76%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.76%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.76%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.76%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.76%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.76%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.76%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.76%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.76%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001081	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006606	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012181	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ006 MetaG	Host-Associated	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021439	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R03	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026359	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-A	Environmental	Open in IMG/M
3300026527	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151 (SPAdes)	Environmental	Open in IMG/M
3300027076	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF012 (SPAdes)	Environmental	Open in IMG/M
3300027326	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027381	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027502	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027583	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027643	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)	Environmental	Open in IMG/M
3300027651	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027701	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031122	Oak Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12662J13196_10186171	3300001081	Forest Soil	PGYVDTVVRRWQALTGGSALHAISGRSFDDLAREAEVADAA*
JGI12053J15887_104075641	3300001661	Forest Soil	AYVDTIIRRWQKLTLDTAQHAESGRIFDDLAQEAEAADVA*
JGI12627J18819_104139381	3300001867	Forest Soil	AYVDTVVRRWQALTGGNARHAVSGRNFDDLAREAEAADAV*
JGIcombinedJ26739_1007665841	3300002245	Forest Soil	DTIVRRWQALTGGSARHAASDRCFDDLADEAEAADAT*
Ga0063454_1006989511	3300004081	Soil	LLKLIHWRVDTGLHRWQALTGGTARHAVSGRSFDDLAAEVGAADV*
Ga0062387_1014524622	3300004091	Bog Forest Soil	AYVDTIVRRWQVLTGGSARHAANGRSFDDLAGETEVADVA*
Ga0066684_110927121	3300005179	Soil	YVDTIVRRWQKLSGGSALHGIGGRSFDDLAREAEVANAA*
Ga0066685_110125041	3300005180	Soil	GHLDTAMRRWQALTGGSARHAASGRSFDDLADEAEAADAA*
Ga0066671_110106192	3300005184	Soil	TIVRRWQKLTGNTARHAETGRAFDDLASEASEAEVADAA*
Ga0070710_105536113	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	YVDTTVRRWQAQTGGSARHAASGRSFDDLASEAEATHAA*
Ga0066661_108607582	3300005554	Soil	VDAIVRRWQALTRGSARHGVTGRSFDDFGREAQVVNAA*
Ga0066692_107197663	3300005555	Soil	AIRRWQALTGGNARHLASDRSFDDLADEAEAADAG*
Ga0066670_105676673	3300005560	Soil	YVDTIIRRWQKLTGGSALHSASGRSFDDLADDMETADAA*
Ga0066699_104355813	3300005561	Soil	IRRWEALTGGSARHAATSRSFDDLAREMEAANAV*
Ga0070763_104272964	3300005610	Soil	VRRWQALTGGSARHAVSGRSFDDLAREAEAGNAV*
Ga0066903_1063414683	3300005764	Tropical Forest Soil	AYVDTTIRRWQRLTGGRVRHAASGCSFDDLAREAEPGHAL*
Ga0074062_100108152	3300006606	Soil	YVDTAIRRWQALTGGTACHTVSGRHFDDLADEAEAADAA*
Ga0066660_113358172	3300006800	Soil	YVDPIVRRWQKLSGGSALHGVSGRSFDELAREAEAANAA*
Ga0099829_104679551	3300009038	Vadose Zone Soil	LDGQWRWQKLTGGIARHAETGHAFDDLAGEAEVANAA*
Ga0066709_1019418863	3300009137	Grasslands Soil	YVDTTVRRWQVHTGGSARHAMSGRSFDDLACEAEAADAA*
Ga0099792_100425013	3300009143	Vadose Zone Soil	SAYVDTIVRRWQALTGGNALHSTSGRRFDDLAREVEVADAA*
Ga0075423_110741921	3300009162	Populus Rhizosphere	AIRRWQVLTGGKARHAASGSHFDDLAGEAEAANAV*
Ga0126374_115846361	3300009792	Tropical Forest Soil	IRRWQALIGASTRHAASGRSFDDFAREAEAANAR*
Ga0126380_102655473	3300010043	Tropical Forest Soil	VDTIVRRWQALTGGSAHHAGSGRSFDDLTRDTEAANAV*
Ga0126373_122888043	3300010048	Tropical Forest Soil	TIRRWQALTGGSARHAASGRSFDDLAREAEADNAL*
Ga0099796_100495013	3300010159	Vadose Zone Soil	VRRWQKLTGGSARHAASGRSFDDLAREVEVANAA*
Ga0074044_107930141	3300010343	Bog Forest Soil	IRRWQALTGGSARHAASGRSFDDLTREAEAANAA*
Ga0126370_112390283	3300010358	Tropical Forest Soil	VDTIIRRWQTATGGRARHAASGRAFDDLADEAEATNAA*
Ga0126372_106230221	3300010360	Tropical Forest Soil	TIRRWQALTGGSARHAASGCSFDDLAGEAEAADVR*
Ga0126378_110583561	3300010361	Tropical Forest Soil	DRLYVDTIIRRWQALTVGSAIQVSSGRCFDELSREAEAAHAV*
Ga0126378_129388962	3300010361	Tropical Forest Soil	IVRRWQALTGGSARHAASGRTFDDLVREPETADAR*
Ga0126379_134782722	3300010366	Tropical Forest Soil	DTTIRRWQKLTGGSARHAASGRSFDDLACEAEAAHAA*
Ga0126381_1016835903	3300010376	Tropical Forest Soil	TIIRRWQAQTGEWAHHASSGRSFDDLARELEAGNGK*
Ga0126381_1022795101	3300010376	Tropical Forest Soil	TIRRWQALTGGSARHAASGRSFDDLAREAEADNAD*
Ga0126381_1028344723	3300010376	Tropical Forest Soil	IIRRWQRLTGGSACHAASGRGFDDLAQEAEAANAV*
Ga0126381_1049918112	3300010376	Tropical Forest Soil	VYTAIRRWQSLTGDQARHAATGRPFDDLVCEAEAANAA*
Ga0134126_121062873	3300010396	Terrestrial Soil	DTSVRRWQKLTGGSARHAASGRSFDDLAREAEVANAA*
Ga0150983_106812991	3300011120	Forest Soil	LSLAITRRCVGVDTIIRRWQAPAGASGRHVASSRDFVDLAREAEVANAA*
Ga0150983_135558111	3300011120	Forest Soil	IRRWQVLTGGKARHAASGHLFDDLAGEAEAADVV*
Ga0137391_108242402	3300011270	Vadose Zone Soil	DTIIRRWQKLTGNSGRHAENGRTFDDLASEAEVADAA*
Ga0137391_110489123	3300011270	Vadose Zone Soil	YVDTIIRRWQRLFGRSARHAVSNRTFDDLVREAEVIDAL*
Ga0153922_10802031	3300012181	Attine Ant Fungus Gardens	IIRRWQKLFGGVALHAESGRSFDELACEAEVADAA*
Ga0137399_115745172	3300012203	Vadose Zone Soil	DTAIRRWQVLTGGKARHAASGRLFDDLAGEAEAPDAA*
Ga0137370_103250281	3300012285	Vadose Zone Soil	PAYADTIVRRWQTLTGGSARHSASGLSFDDLVCEAEAANAA*
Ga0137360_105113991	3300012361	Vadose Zone Soil	MDTIVLRWQALTGETACHAVSGGSFDDLAREAEVVDAA*
Ga0137360_108320021	3300012361	Vadose Zone Soil	GGATAWSSIPAMVDTIVRRWQALSGGSARHALSGRNFDDLAREAEAANAA*
Ga0137398_112057672	3300012683	Vadose Zone Soil	DTIIRRWQKLTGDIARHAESGRSFADLTSEGEVTDAV*
Ga0137394_115588662	3300012922	Vadose Zone Soil	MELDPVFVDTAILRWQALTGGKAHHAAGGHLFDDLAGEAEATDAV*
Ga0137416_108565453	3300012927	Vadose Zone Soil	AIRRWQALTGGHARHGASGRSFDDLADEAEAADAA*
Ga0137416_114845061	3300012927	Vadose Zone Soil	DTVVLRWQRLTGGSALHAVSSRSFDDLADEAEAADAT*
Ga0137407_118368141	3300012930	Vadose Zone Soil	TLVRRWQTVSGGTARHAASGQDFDDLAREAEVANAA*
Ga0126375_108416613	3300012948	Tropical Forest Soil	LLWARARPGYVDTAIRRWQNLTGDQARHAATERSFDDLVREAEAANAA*
Ga0126369_101321601	3300012971	Tropical Forest Soil	VYVDTIVRRWQALTGGSARHAASGRTFDDLVREPETADAR*
Ga0126369_114362251	3300012971	Tropical Forest Soil	MRRWQTLTGDRARRAATGRLFDDLVREAEAANAA*
Ga0126369_115204521	3300012971	Tropical Forest Soil	IVRRWQKQTGGSARHAPSGRSFDDLAREAEVANAA*
Ga0126369_117169813	3300012971	Tropical Forest Soil	TTIRRWQALTGGSARHAASGSSFDDLAREAEAVNVA*
Ga0126369_120338063	3300012971	Tropical Forest Soil	VDTIVRRWQKRTAGSARHAVSDRGFDDLAREAGVANAA*
Ga0164306_106621071	3300012988	Soil	YVDTSVRRWQKLTGGSARHAASGRSFDDLAREAEVANAA*
Ga0182036_112657511	3300016270	Soil	IIRRWQGLTGGRAYHATSGRGFDDLSQEVEAANAG
Ga0182040_117193922	3300016387	Soil	GYVDTAIRRWQTLTGDKARHAVTGCYFDDLVREGEAANAA
Ga0182039_108139341	3300016422	Soil	TAIRRWQTLTGDKARHAATVRSFDDLVCEAEAANAA
Ga0187804_105073982	3300018006	Freshwater Sediment	VDTIIRRWQIFTGDAAIHAMTGKRFDDLAREAEARHD
Ga0066662_101801011	3300018468	Grasslands Soil	DPGYVDTIVRRWQKLSGGSALHGMSGRSFDERARDAEVANAA
Ga0210407_108334273	3300020579	Soil	AISRWQALTGGKARHAASGRSFDDLAGEAEVVDVV
Ga0210403_110336412	3300020580	Soil	VDTIVRRWQTLTGGSARHAASGRTFDDLTREPEPADAR
Ga0210399_102147902	3300020581	Soil	VGVDTIIRRWQALTGASARHVASSRDFVDLAREAEVANAA
Ga0210399_104376813	3300020581	Soil	DAGYVDTTVRRWQALTGEKARHAISGRSFDDLADEAEAADAAR
Ga0210399_105380093	3300020581	Soil	YVDTIVRRWQALTGGSAHHAASGGNFDDLAREAEATNAT
Ga0210404_108469732	3300021088	Soil	IDTAIRRWQGLTGGTARHAANGRSFDDLAREAEAANAV
Ga0210400_109616851	3300021170	Soil	GLARIRRWQAPAGASGRHVASSRDFVDLARDAEVANAA
Ga0210408_112776622	3300021178	Soil	PAYVDTILRRWQALTGGSARHAASGRSFDDLTREAEVANAA
Ga0210387_117576792	3300021405	Soil	VTGFEIGEIRRWQTLTGDQARHAATGRSFDDLVREAEAANAAG
Ga0210384_116564121	3300021432	Soil	VDTAIRRWQTLTGDKARQADTGRYFDDLASTVEATNAV
Ga0213879_101878091	3300021439	Bulk Soil	GYVDTIIRRWQVLTGGNACHAASGRRFDDLACEAEGANAA
Ga0210402_103981181	3300021478	Soil	TAIRRWQALTGGKAHYAAGGRLFDDLAGEAEATDGV
Ga0210402_115726701	3300021478	Soil	VDTIIRRWQALTGASARHVASSRDFVDLAREAEVANAA
Ga0210409_114024783	3300021559	Soil	AIRRWQTLTGGNARHVASDRSFDDLADEAEAADAG
Ga0207692_102773931	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	GYVDTIVRRWQKLSGGSALHGISGRSFDDLAREAEVANAA
Ga0207685_107674272	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	DTIVRRWQALTGGSAHHAASGCNFDDLAREAEATNAT
Ga0207693_105161564	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	TSVRRWQKLTGGSARHAASGRSFDDLAREAEVADAA
Ga0257163_10425241	3300026359	Soil	YVDTSVRRWQKLTGGRARHATSGRSFDDLAREAEAANAA
Ga0209059_13094941	3300026527	Soil	AYVDTSVRRWQKLTGGSARHAASGRSFDDLAREAEVANAA
Ga0208860_10293563	3300027076	Forest Soil	DTIVRRWQALTGGSARHSASGRSFDDLACEAEAGDAD
Ga0209731_10051932	3300027326	Forest Soil	AAYVDTIIRRWQAQIGRSARHATNGRSFDDLAREAEAPDAA
Ga0208983_10556042	3300027381	Forest Soil	DTIIRRWQKLTGNVARHAETGRAFDDLAGEAEVANAA
Ga0209622_10624663	3300027502	Forest Soil	AIRRWQTLTGDQARHAATGRSFDDLVREAEAANAA
Ga0209527_10830043	3300027583	Forest Soil	TIVCRWQKLSGGSALNAISGRRFDDLAREAEVANAA
Ga0209076_11047991	3300027643	Vadose Zone Soil	DTIVRRWQKLSGGSALHGISGRSFDDLAREAEVANAA
Ga0209217_10554873	3300027651	Forest Soil	VYVDTAIRRWQALTGEKARQAASGSYFDDLADEAEAANAA
Ga0209447_100740201	3300027701	Bog Forest Soil	GYVDTIIRRWQKLTGGSALHSESGRNFDDLADDMEAADAAA
Ga0209656_103855093	3300027812	Bog Forest Soil	DAIIRRWQALTGGTARHAVNGRAFDDLAGDMEVGDAA
Ga0209465_100189995	3300027874	Tropical Forest Soil	TIVRRWQKLTGGSARHAVSDRGFDDLAREAGVADAA
Ga0209488_110111091	3300027903	Vadose Zone Soil	VDTIIRRWQKLTGGTARHAEHGRTFDNLASEAEVRDAA
Ga0209006_113952581	3300027908	Forest Soil	WLDVDTIIRRWQAQTGGRACHAASGRSFDDLAAEAEAANAR
Ga0170834_1016118192	3300031057	Forest Soil	DTVVRRWQALTGGSALHAISGRSFDDLAREAEVADAA
Ga0170822_132885464	3300031122	Forest Soil	LDTTIRRWQKLTGGSARHAATSRIYDDLAREAEVTNAA
Ga0170823_128804193	3300031128	Forest Soil	YVDTSVRRWQALTGEKARHAISGSRFDDLADQAEAADAAR
Ga0318541_107178372	3300031545	Soil	DTTVRRWQTLTGGRARYATSGRSFDDLAREAEAANAP
Ga0318528_104676711	3300031561	Soil	VDATVRRWQTLSGRSALHRVSGRSFDDLTREAEVAHAA
Ga0310915_105267053	3300031573	Soil	TTIRRWQALTGGSARHAASGSSFDDLAREVEAGNVA
Ga0318574_103164172	3300031680	Soil	VDTAIRRWQALTGESALHAASARSFADLAREAEVADVA
Ga0318560_104423593	3300031682	Soil	TVRRWQALTGEKARHAISGRSFDDLADEAEAADAVR
Ga0318500_102362301	3300031724	Soil	GYVDTAIRRWQTLTGDKARHAATGRYFDDLVREAEAANAV
Ga0306918_103091573	3300031744	Soil	VDTIIRRWQGLTGGSADHAASGRGFDDLAREAEAANG
Ga0318492_101627093	3300031748	Soil	VYVDTIIRRWQKLSGGSAVHGISGRSFDDLARQAEVANAA
Ga0318492_104834782	3300031748	Soil	AVRRWQALTGDEARHAANGRSFDDLAAEAEVAHAVR
Ga0318494_103080441	3300031751	Soil	AVRRWQSLTGDEARHAANGRSFDDLAAEAEVAHAAR
Ga0318521_102717091	3300031770	Soil	TIIRRWQGLTGGSADHAASGRGFDDLAREAEAANG
Ga0318521_103301163	3300031770	Soil	VDTILRRWQALTGGSARHAVSGRSFDDLVREAEAANGI
Ga0318546_103713111	3300031771	Soil	YVDATVRRWQTLSGRSALHGVSGRSFDDLTREAEVAHAA
Ga0318546_105324661	3300031771	Soil	DTIIRRWQGLTGGSADHAMSGRGFDDLAREAEAANG
Ga0318550_105873002	3300031797	Soil	PGHTDTAVRRWQSLTGDEARHAANGRSFDDLAAEAEVAHAAR
Ga0318523_106558742	3300031798	Soil	VDTVIRRWQGLTGGSARHATNGRNFDDLAREAEAANAV
Ga0318499_103639482	3300031832	Soil	TDTAVRRWQALTGDEARHAANGRSFDDLAAEAEVAHAVR
Ga0318517_101835191	3300031835	Soil	AYVDTAIRRWQVLTGESALHATSDRSFADLAREAEVADVA
Ga0306921_119628363	3300031912	Soil	YVDTAIRRWQALTGESARNAATGRLFDDLAREAEVADAV
Ga0310912_109039631	3300031941	Soil	GYVDTAIRRWQTLTGDQAQHAATGRSFDDLVPEAEAANAA
Ga0310916_101977281	3300031942	Soil	AIRRWQALTGGKARHAESGRSFDDLAAEAEAANAG
Ga0310910_102790773	3300031946	Soil	LDAGYVDTTVRRWQALTGEKARHAISGRSFDDLADEAEAADAAR
Ga0310910_109107941	3300031946	Soil	YADTVIRRWQTLTGGSARHAASGRNFADLTREAEATNAV
Ga0310910_112584672	3300031946	Soil	RYVDTAIRRWQTLTGEVAHHGVSGRSFDDLAREAEVVDAA
Ga0307479_112757841	3300031962	Hardwood Forest Soil	YVDTAIRRWQVLTGGKARHAASGRLFDDLAGEAEAANAV
Ga0318559_102062383	3300032039	Soil	PGYVDTAIRRWQTLTGDKARHGATGHYFDDLVREAEAANAV
Ga0318549_101694701	3300032041	Soil	TTIRRWQALTGGSARHAASGSSFDDLAREAEAGNVA
Ga0318532_103491732	3300032051	Soil	DTIVRRWQALTSGSARHATNGRNFGDLARKPEAASAA
Ga0318533_107575773	3300032059	Soil	ILRRWQALTGGSARHAVSGRSFDDLVREAEAANGI
Ga0318553_107211501	3300032068	Soil	DTTIRRWQALTGGSACHAESGRSFDDLAGETEAADVR
Ga0306924_101428601	3300032076	Soil	VDTAIRRWQALTGESVLHAANGRSFADLAREAEVADVA
Ga0306924_113743323	3300032076	Soil	VDTAIRRWQALTGESARNAATGRLFDDLAREAEVADAV
Ga0306920_1002939371	3300032261	Soil	LDPTHVDAISRRWETLTGGSARHAASGRSLDDLAREVEAANAA
Ga0306920_1036447811	3300032261	Soil	YVDTIIRRWQKLSGGSAVHGISGRSFDDLARQAEVANAA
Ga0310914_100922893	3300033289	Soil	DTAIRRWQTLTGDKARHAATGCYFDDLVREAEAANAAG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F060875

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences