Metagenome / Metatranscriptome Family F060790

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F060790
Family Type	Metagenome / Metatranscriptome
Number of Sequences	132
Average Sequence Length	80 residues
Representative Sequence	LAPLAWALSRLAGGRDAVVLRGRYVVARRLAALPVIVRAAGPGVLFEAVFERRAQELGIDIVGSRPRRPVPLLLRPVLRFLAA
Number of Associated Samples	121
Number of Associated Scaffolds	132

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	98.48 %
% of genes from short scaffolds (< 2000 bps)	93.18 %
Associated GOLD sequencing projects	113
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (87.121 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (17.424 % of family members)
Environment Ontology (ENVO)	Unclassified (36.364 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (42.424 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 34.23% β-sheet: 17.12% Coil/Unstructured: 48.65%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.45
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.45
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 132 Family Scaffolds
PF02163	Peptidase_M50	88.64
PF09243	Rsm22	2.27
PF00670	AdoHcyase_NAD	1.52
PF00535	Glycos_transf_2	0.76
PF02036	SCP2	0.76
PF13180	PDZ_2	0.76
PF13489	Methyltransf_23	0.76
PF00990	GGDEF	0.76
PF00924	MS_channel	0.76

COG ID	Name	Functional Category	% Frequency in 132 Family Scaffolds
COG5459	Ribosomal protein RSM22 (predicted mitochondrial rRNA methylase)	Translation, ribosomal structure and biogenesis [J]	2.27
COG0499	S-adenosylhomocysteine hydrolase	Coenzyme transport and metabolism [H]	1.52
COG0668	Small-conductance mechanosensitive channel	Cell wall/membrane/envelope biogenesis [M]	0.76
COG3264	Small-conductance mechanosensitive channel MscK	Cell wall/membrane/envelope biogenesis [M]	0.76

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	87.12 %
Unclassified	root	N/A	12.88 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	87.12 %
Unclassified	root	N/A	12.88 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	87.12 %
Unclassified	root	N/A	12.88 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	82.58 %
Unclassified	root	N/A	12.88 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.76 %

Name	Rank	Taxonomy	Distribution
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	73.48 %
Unclassified	root	N/A	12.88 %
unclassified Proteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria	6.06 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.76 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	73.48 %
Unclassified	root	N/A	12.88 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	6.06 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	12.88 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	6.82 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	6.06 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.76 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	12.88 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	6.06 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	3.79 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.76 %
Sorangiineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae	0.76 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	12.88 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	6.06 %
Anaeromyxobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae	3.79 %
Sandaracinaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Sandaracinaceae	0.76 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.76 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	12.88 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	6.06 %
Anaeromyxobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter	3.79 %
unclassified Sandaracinaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Sandaracinaceae → unclassified Sandaracinaceae	0.76 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.76 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	12.88 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	6.06 %
Anaeromyxobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter	3.79 %
Sandaracinaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Sandaracinaceae → unclassified Sandaracinaceae → Sandaracinaceae bacterium	0.76 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.76 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.76 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000891\|JGI10214J12806_10028550	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	537	Open in IMG/M
3300000956\|JGI10216J12902_112186726	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	570	Open in IMG/M
3300004047\|Ga0055499_10084315	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	566	Open in IMG/M
3300004463\|Ga0063356_103617718	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	666	Open in IMG/M
3300004480\|Ga0062592_100831556	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	823	Open in IMG/M
3300004643\|Ga0062591_102058097	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	590	Open in IMG/M
3300005093\|Ga0062594_100745112	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	894	Open in IMG/M
3300005328\|Ga0070676_10018719	All Organisms → cellular organisms → Bacteria	3842	Open in IMG/M
3300005329\|Ga0070683_102188603	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	531	Open in IMG/M
3300005335\|Ga0070666_10271311	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1204	Open in IMG/M
3300005337\|Ga0070682_100322658	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1141	Open in IMG/M
3300005338\|Ga0068868_100300373	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1363	Open in IMG/M
3300005353\|Ga0070669_101494166	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	587	Open in IMG/M
3300005364\|Ga0070673_101915175	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter	562	Open in IMG/M
3300005366\|Ga0070659_101453718	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	610	Open in IMG/M
3300005367\|Ga0070667_100045724	All Organisms → cellular organisms → Bacteria	3681	Open in IMG/M
3300005437\|Ga0070710_10427619	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	893	Open in IMG/M
3300005440\|Ga0070705_101452173	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	573	Open in IMG/M
3300005530\|Ga0070679_101359441	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	656	Open in IMG/M
3300005535\|Ga0070684_101628980	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	609	Open in IMG/M
3300005543\|Ga0070672_100106174	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	2284	Open in IMG/M
3300005543\|Ga0070672_101809493	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter	549	Open in IMG/M
3300005563\|Ga0068855_101712555	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	641	Open in IMG/M
3300005569\|Ga0066705_10737345	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	591	Open in IMG/M
3300005577\|Ga0068857_101661490	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	624	Open in IMG/M
3300005578\|Ga0068854_101118846	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	702	Open in IMG/M
3300005617\|Ga0068859_101022847	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	908	Open in IMG/M
3300005618\|Ga0068864_101853771	All Organisms → cellular organisms → Bacteria → Proteobacteria	608	Open in IMG/M
3300005719\|Ga0068861_100185825	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1733	Open in IMG/M
3300005836\|Ga0074470_11053605	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	2029	Open in IMG/M
3300005844\|Ga0068862_100096256	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	2584	Open in IMG/M
3300005844\|Ga0068862_102580405	Not Available	520	Open in IMG/M
3300005993\|Ga0080027_10135389	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	940	Open in IMG/M
3300005995\|Ga0066790_10430463	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	564	Open in IMG/M
3300006034\|Ga0066656_11026961	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	529	Open in IMG/M
3300006755\|Ga0079222_11968190	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	573	Open in IMG/M
3300007004\|Ga0079218_12178166	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	643	Open in IMG/M
3300009545\|Ga0105237_12433965	Not Available	534	Open in IMG/M
3300009545\|Ga0105237_12661000	Not Available	511	Open in IMG/M
3300010047\|Ga0126382_10952098	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	748	Open in IMG/M
3300010397\|Ga0134124_10122344	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	2292	Open in IMG/M
3300010397\|Ga0134124_12075613	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	606	Open in IMG/M
3300010398\|Ga0126383_12666189	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	583	Open in IMG/M
3300011439\|Ga0137432_1280626	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	533	Open in IMG/M
3300011441\|Ga0137452_1042627	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1432	Open in IMG/M
3300012172\|Ga0137320_1107713	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	595	Open in IMG/M
3300012205\|Ga0137362_10559710	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	987	Open in IMG/M
3300012212\|Ga0150985_117407510	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	742	Open in IMG/M
3300012469\|Ga0150984_112488718	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1108	Open in IMG/M
3300012899\|Ga0157299_10235482	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter	572	Open in IMG/M
3300012916\|Ga0157310_10479418	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter	536	Open in IMG/M
3300012923\|Ga0137359_11393029	All Organisms → cellular organisms → Bacteria → Proteobacteria	589	Open in IMG/M
3300012925\|Ga0137419_11062043	Not Available	673	Open in IMG/M
3300012958\|Ga0164299_11203212	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	573	Open in IMG/M
3300012971\|Ga0126369_11088322	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	888	Open in IMG/M
3300012971\|Ga0126369_11991065	Not Available	669	Open in IMG/M
3300012987\|Ga0164307_11675361	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	539	Open in IMG/M
3300012989\|Ga0164305_10283833	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1215	Open in IMG/M
3300013296\|Ga0157374_11544034	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	688	Open in IMG/M
3300013307\|Ga0157372_11399591	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	806	Open in IMG/M
3300013307\|Ga0157372_12336606	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	614	Open in IMG/M
3300013307\|Ga0157372_12552633	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	586	Open in IMG/M
3300014325\|Ga0163163_10993059	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	903	Open in IMG/M
3300014969\|Ga0157376_12179000	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	593	Open in IMG/M
3300015371\|Ga0132258_13535256	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1070	Open in IMG/M
3300015374\|Ga0132255_100346867	All Organisms → cellular organisms → Bacteria	2149	Open in IMG/M
3300016341\|Ga0182035_11936844	Not Available	535	Open in IMG/M
3300017792\|Ga0163161_10722379	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	831	Open in IMG/M
3300018433\|Ga0066667_12124113	Not Available	520	Open in IMG/M
3300018476\|Ga0190274_11092677	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	877	Open in IMG/M
3300018476\|Ga0190274_13085209	Not Available	560	Open in IMG/M
3300020016\|Ga0193696_1133418	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	623	Open in IMG/M
3300020078\|Ga0206352_10691193	All Organisms → cellular organisms → Bacteria → Proteobacteria	688	Open in IMG/M
3300021180\|Ga0210396_10969808	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	721	Open in IMG/M
3300021474\|Ga0210390_10846503	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	755	Open in IMG/M
3300022718\|Ga0242675_1025049	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	868	Open in IMG/M
3300023077\|Ga0247802_1073291	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	569	Open in IMG/M
3300025703\|Ga0208357_1054240	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1302	Open in IMG/M
3300025898\|Ga0207692_11047122	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	539	Open in IMG/M
3300025899\|Ga0207642_10052025	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1856	Open in IMG/M
3300025903\|Ga0207680_10200713	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1359	Open in IMG/M
3300025921\|Ga0207652_10880826	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	792	Open in IMG/M
3300025930\|Ga0207701_11159441	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	638	Open in IMG/M
3300025942\|Ga0207689_10251065	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1463	Open in IMG/M
3300025945\|Ga0207679_11151109	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	712	Open in IMG/M
3300025981\|Ga0207640_10861769	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	789	Open in IMG/M
3300026023\|Ga0207677_12188471	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	514	Open in IMG/M
3300026116\|Ga0207674_11963204	Not Available	551	Open in IMG/M
3300026118\|Ga0207675_100003161	All Organisms → cellular organisms → Bacteria	16158	Open in IMG/M
3300026121\|Ga0207683_10846406	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Sandaracinaceae → unclassified Sandaracinaceae → Sandaracinaceae bacterium	849	Open in IMG/M
3300026121\|Ga0207683_11467455	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	630	Open in IMG/M
3300027867\|Ga0209167_10755281	Not Available	530	Open in IMG/M
3300028293\|Ga0247662_1007930	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1640	Open in IMG/M
3300028587\|Ga0247828_11132627	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter	520	Open in IMG/M
3300028716\|Ga0307311_10264791	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	513	Open in IMG/M
3300030339\|Ga0311360_10834755	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	731	Open in IMG/M
3300031241\|Ga0265325_10344173	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	659	Open in IMG/M
3300031250\|Ga0265331_10403427	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	613	Open in IMG/M
3300031474\|Ga0170818_113898950	Not Available	546	Open in IMG/M
3300031546\|Ga0318538_10487437	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	668	Open in IMG/M
3300031547\|Ga0310887_11097302	Not Available	511	Open in IMG/M
3300031640\|Ga0318555_10479326	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	674	Open in IMG/M
3300031668\|Ga0318542_10394025	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	715	Open in IMG/M
3300031716\|Ga0310813_10202537	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1628	Open in IMG/M
3300031723\|Ga0318493_10426964	Not Available	727	Open in IMG/M
3300031726\|Ga0302321_101336507	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	823	Open in IMG/M
3300031726\|Ga0302321_102239119	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	636	Open in IMG/M
3300031744\|Ga0306918_10867061	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	704	Open in IMG/M
3300031771\|Ga0318546_10358156	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1016	Open in IMG/M
3300031771\|Ga0318546_10659983	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	736	Open in IMG/M
3300031796\|Ga0318576_10388293	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	660	Open in IMG/M
3300031799\|Ga0318565_10392193	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	673	Open in IMG/M
3300031831\|Ga0318564_10109189	All Organisms → cellular organisms → Bacteria	1230	Open in IMG/M
3300031846\|Ga0318512_10629845	Not Available	548	Open in IMG/M
3300031854\|Ga0310904_10118707	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1487	Open in IMG/M
3300031858\|Ga0310892_10201795	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1196	Open in IMG/M
3300031860\|Ga0318495_10533166	Not Available	511	Open in IMG/M
3300031897\|Ga0318520_10469230	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	775	Open in IMG/M
3300031939\|Ga0308174_10287112	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1292	Open in IMG/M
3300031941\|Ga0310912_11510390	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	505	Open in IMG/M
3300031942\|Ga0310916_11708349	Not Available	509	Open in IMG/M
3300031943\|Ga0310885_10205978	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	975	Open in IMG/M
3300031945\|Ga0310913_10125397	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1756	Open in IMG/M
3300031947\|Ga0310909_10266115	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1434	Open in IMG/M
3300031996\|Ga0308176_11609874	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	692	Open in IMG/M
3300032001\|Ga0306922_12393093	Not Available	504	Open in IMG/M
3300032003\|Ga0310897_10085356	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1224	Open in IMG/M
3300032052\|Ga0318506_10469735	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	557	Open in IMG/M
3300032065\|Ga0318513_10312914	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	763	Open in IMG/M
3300032068\|Ga0318553_10485217	All Organisms → cellular organisms → Bacteria → Proteobacteria	648	Open in IMG/M
3300032893\|Ga0335069_11715921	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	669	Open in IMG/M
3300034129\|Ga0370493_0009590	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2797	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	67.42%
Host-Associated	Host-Associated	32.58%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	63.64%
Plants	Host-Associated → Plants	32.58%
Aquatic	Environmental → Aquatic	3.79%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	61.36%
Rhizoplane	Host-Associated → Plants → Rhizoplane	16.67%
Rhizosphere	Host-Associated → Plants → Rhizosphere	15.15%
Sediment	Environmental → Aquatic → Sediment	3.03%
Peat	Environmental → Terrestrial → Peat	2.27%
Marine	Environmental → Aquatic → Marine	0.76%
Roots	Host-Associated → Plants → Roots	0.76%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	52.27%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	12.88%
Soil	Host-Associated → Plants → Rhizosphere → Soil	9.85%
Loam	Environmental → Terrestrial → Soil → Loam	6.06%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.30%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.03%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.03%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.27%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.27%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.52%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.76%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.76%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	20.45%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	12.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	9.85%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	6.06%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.06%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.30%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.55%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.55%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.03%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.27%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.27%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.52%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.52%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.52%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.76%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.76%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.76%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	17.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.58%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	6.06%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	4.55%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	3.79%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.79%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.03%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.03%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.03%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	2.27%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.27%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.27%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.27%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.27%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.27%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.27%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.52%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.52%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	1.52%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.52%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.52%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.52%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.52%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	1.52%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.52%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.76%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.76%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.76%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.76%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.76%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.76%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.76%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.76%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.76%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.76%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.76%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.76%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.76%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.76%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.76%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.76%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.76%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.76%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004047	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqC_D1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005836	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBB	Environmental	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300005993	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046	Environmental	Open in IMG/M
3300005995	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011439	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT820_2	Environmental	Open in IMG/M
3300011441	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT513_2	Environmental	Open in IMG/M
3300012172	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT366_2	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012899	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S058-202B-2	Environmental	Open in IMG/M
3300012916	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S213-509R-2	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300020016	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m1	Environmental	Open in IMG/M
3300020078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300022718	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300023077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S076-202R-6	Environmental	Open in IMG/M
3300025703	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F52-2 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028293	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK03	Environmental	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028716	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198	Environmental	Open in IMG/M
3300030339	III_Bog_N1 coassembly	Environmental	Open in IMG/M
3300031241	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG	Host-Associated	Open in IMG/M
3300031250	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG	Host-Associated	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031726	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032003	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D1	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300034129	Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_fen_01D_16	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10214J12806_100285502	3300000891	Soil	VVLRGRYIVARRLTVLPVVVRAAGPGVLFEAVFEQRAQELGIDIVGSRSRRPVPLLLRPVLRFLAA*
JGI10216J12902_1121867261	3300000956	Soil	LRDRYVVARRLAALPVIVRASAPGLLFEPLFERRAQELGIDIVGTRPKRPTPLLLRPVLRFLAA*
Ga0055499_100843151	3300004047	Natural And Restored Wetlands	GWALSRIASGRDAVVLRGRYVVARRLAALPVVARASGPSLLFEAVFEGRAQELGIDIVGSRPRRLPPLLLRPVLRFLAA*
Ga0063356_1036177182	3300004463	Arabidopsis Thaliana Rhizosphere	PVSLAPLAWALSRLGNGRDAVVLRGRYIVARRLTVLPVVVRAAGPGVLFEAVFEQRAQELGIDIVGSRSRRPVPLLLRPVLRFLAA*
Ga0062592_1008315562	3300004480	Soil	GRDAVVLRGRYVVARRLAVLPVVVRASGPGVLFEAVFERRAQELGIDIVGSRPRRPVPLLLRPVLRFLAA*
Ga0062591_1020580971	3300004643	Soil	VSLAPLAWALSRLGNGRDAVVLRGRYIVARRLTVLPVVVRAAGPGVLFEAVFEQRAQELGIDIVGSRSRRPVPLLLRPVLRFLAA*
Ga0062594_1007451121	3300005093	Soil	SRLAAGRDAVVLRGRYIVARRLTVLPVVVRAAGPGVLFEAVFEQRAQEMGVDIVGSRSRRPVPLLLRPVLRFLAA*
Ga0070676_100187195	3300005328	Miscanthus Rhizosphere	VLLDASKPVSLAPLAWALSRLGNGRDAVVLRGRYIVARRLTVLPVVVRAAGPGVLFEAVFEQRAQELGIDIVGSRSRRPVPLLLRPVLRFLAA*
Ga0070683_1021886031	3300005329	Corn Rhizosphere	RGRYVVARRLATLPVIVRASGPGLLFEPVFERRAQELGIDVVGSRPRSAMPLLLRPVLRFLAA*
Ga0070666_102713111	3300005335	Switchgrass Rhizosphere	AVVLRGRYVVARRLAALPVIVRAAGPGVLFEAVFERRAQELGIDIVGSRPRRPVPLLLRPVLRFLAA*
Ga0070682_1003226581	3300005337	Corn Rhizosphere	DAGKPSSLAPLAWALSRLAGGRDAVVLRGRYVVARRLAALPVIVRAAGPGVLFEAVFERRAQELGIDIVGSRPRRPVPLLLRPVLRFLAA*
Ga0068868_1003003731	3300005338	Miscanthus Rhizosphere	RDAVVLRGRYIVARRLTVLPVVVRAAGPGVLFEAVFEQRAQELGIDIVGSRSRRPVPLLLRPVLRFLAA*
Ga0070669_1014941661	3300005353	Switchgrass Rhizosphere	LAPLAWALSRIGGGRDAVVLRGRYVVARRLKALPIIVRASGPGLLFEPVFERRAQELGVDIVGSRPRRPMPLLLRPVLRFLAA*
Ga0070673_1019151752	3300005364	Switchgrass Rhizosphere	VSLAPLAWALSRIASGRDAVVLRGRYVVARRLAALPVIVRAAGPGVLFEAVFESRAQELGIDIVGSRPRRPVPLLLRPVLRFLAA*
Ga0070659_1014537181	3300005366	Corn Rhizosphere	VVLVDASKPVSLAPLAWALSRIASGRDAVVLRGRYVVARRLAALPVIVRAAGPGVLFEAVFERRAQELGIDIVGSRPRQPVPLLLRPVLRFLAA*
Ga0070667_1000457241	3300005367	Switchgrass Rhizosphere	PLAWALSRLGSGRDAVVLRGRYIVARRLTVLPVVVRAAGPGVLFEAVFEQRAQELGIDIVGSRSRRPVPLLLRPVLRFLAA*
Ga0070710_104276192	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	DAVVLRGRYVVARRLAALPVIVRASRPGLFFEALFERRAQELGIDVVGSRPRRPTPLLLRPVLRFLAA*
Ga0070705_1014521732	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	APLAWALSRLAAGRDAVVLRGRYIVARRLTVLPVVVRAAGPGVLFEAVFEQRAQEMGVDIVGSRSRRPVPLLLRPVLRFLAA*
Ga0070679_1013594411	3300005530	Corn Rhizosphere	AGREAVILRGRYIVARRLLALPIIVRASGPGLLFEHVFERRGKDLGIDIVGTRPRNPAPLLLRPVLRFLAA*
Ga0070684_1016289802	3300005535	Corn Rhizosphere	VVVLLDASKPLSLAPLAWALSRLAAGRDAVVLRGRYIVARRLTVLPVVVRAAGPGVLFEAVFEQRAQEMGVDIVGSRSRRPVPLLLRPVLRFLAA*
Ga0070672_1001061743	3300005543	Miscanthus Rhizosphere	VVVLLDASKPVSLAPLAWALSRLGSGRDAVVLRGRYIVARRLTVLPVVVRAAGPGVLFEAVFEQRAQELGIDIVGSRSRRPVPLLLRPVLRFLAA*
Ga0070672_1018094931	3300005543	Miscanthus Rhizosphere	LAPLAWALSRLAGGRDAVVLRGRYVVARRLAALPVIVRAAGPGVLFEAVFERRAQELGIDIVGSRPRRPVPLLLRPVLRFLAA*
Ga0068855_1017125551	3300005563	Corn Rhizosphere	GRYVVARRLAALPVIVRASRPGLFFEAVFERRAQELGIDVVGSRPRRPTPLLLRPVLRFLAA*
Ga0066705_107373452	3300005569	Soil	GKPVSLAPLAWALSRIAAGRDAVVLRGRYIVARRLAVLPVIVRAAGPGVLFEAVFERRAQELGIDIVGSRPRRPLPLLLRPVLRFLAA*
Ga0068857_1016614901	3300005577	Corn Rhizosphere	TSLAPLAWALSRLAAGRDAVVLRGRYVVARRLAVLPVVVRASGPGVLFEAVFERRAQELGIDIVGSRPRRPVPLLLRPVLRFLAA*
Ga0068854_1011188461	3300005578	Corn Rhizosphere	DASKPVSLAPLAWALSRLGSGRDAVVLRGRYIVARRLTVLPVVVRAAGPGVLFEAVFEQRAQELGIDIVGSRSRRPVPLLLRPVLRFLAA*
Ga0068859_1010228472	3300005617	Switchgrass Rhizosphere	WALSRLAAGRDAVVLRGRYIVARRLTVLPVVVRAAGPGVLFEAVFEQRAQEMGVDIVGSRSRRPVPLLLRPVLRFLAA*
Ga0068864_1018537712	3300005618	Switchgrass Rhizosphere	LSRLEAGREAVILRGRYIVARRLLTLPVIVRASGPGLLFEHLFERRARDLGIDVVGTRPRSPAPLLLRPVLRFLAA*
Ga0068861_1001858251	3300005719	Switchgrass Rhizosphere	SLAPLGWALSRLAAGREAVILRGRYIVARRLMALPIIVRASGPGLLFERLFERRAIDLGIDIIDVSGARPEPRRGAALLLAPVVRFLAA*
Ga0074470_110536051	3300005836	Sediment (Intertidal)	KPVSLAPLAWALSRLATGRHAVVLRGRYVVARRLAVLPVIVRAAGPGVLFEAVFESRAQELGIDIVGSRPRRPVPLLLRPVLRFLAA*
Ga0068862_1000962561	3300005844	Switchgrass Rhizosphere	VVVLLDASKPVSLAPLAWALSRLGNGRDAVVLRGRYIVARRLTVLPVVVRAAGPGVLFEAVFEQRAQELGIDIVGSRSRRPVPLLLRPVLRFLAA*
Ga0068862_1025804052	3300005844	Switchgrass Rhizosphere	LAPLAWALSRIAAGRDAVVLRGRYVVARRLAVLPVVVRASGPGVLFEAVFERRAQELGIDIVGSRPRSPVPLLLRPVLRFLAA*
Ga0080027_101353891	3300005993	Prmafrost Soil	VSFAPLGWALSRLAAGREAVILRGRYIVARRLMALPVIVRASGPGLLFEPIFERRAQELGIDVVGSRPKQPTPFLLRPVLRFFAA*
Ga0066790_104304632	3300005995	Soil	ALSRLAGGREAVILRGRYIVARRLMALPVIVRASGPGLLFEPIFERRAQELGIDVVGSRPKQPTPFLLRPVLRFLAA*
Ga0066656_110269612	3300006034	Soil	TGRDAVVLRGRYVIARRVAALPIIVRAAGPGVLFEAVFESRAQELGIDIVGSRPRGPVPLLLRPVLRFLAA*
Ga0079222_119681901	3300006755	Agricultural Soil	ASKPVPLAPLAWALSRIGSGRDAVVLRGRYIVARRLAVLPVVVRAGGPGVLFEAVFERRAQELGIDIVGSRPHRPVPLLLRPVLRFLAA*
Ga0079218_121781662	3300007004	Agricultural Soil	DAGKPAPLAPLAWALSRIGAGRDAVVLRGRYVVARRLAALPIIVRASGPGLLFEPVFERRAQELGVDIVGSRPRRPMPLLLRPVLRFLAA*
Ga0105237_124339651	3300009545	Corn Rhizosphere	NMIGSGVFLLPVSLAPLGWALSRLEAGREAVILRGRYIVARRLLALPIIVRASGPGLLFEHVFERRGKDLGIDIVGTRPRNPAPLLLRPVLRFLAA*
Ga0105237_126610002	3300009545	Corn Rhizosphere	GAVVVLLEANRKVSFAPLGWALSRLGAGREAVILRGRYIVARRLMALPVIVRASGPGLLFEPIFERRAQELGIDVVGSRPKRPTPLLLRPVLRFLAA*
Ga0126382_109520982	3300010047	Tropical Forest Soil	VVLLDAGKPASLAPLAWALSRIAAGRAAVVLRGRYVVARRLAVLPVVVRAAGPGLLFEAVFERRAQELGIDIVGSRPRSPVPLLLRPVLRFLAA*
Ga0134124_101223441	3300010397	Terrestrial Soil	ASKAASLAPLGWALSRLEAGREAVILRGRYIVARRLMALPIIVRASGPGLLFEHVFERRAQDLGIDVVGTRAKSRPPLFLRPVLRFLST*
Ga0134124_120756131	3300010397	Terrestrial Soil	RDAVVLRGRYIVARRLAALPVVVRASCPGVLFEPVFERRAQELGIDVVGSRPRGSMPLLLRPVLRFLAA*
Ga0126383_126661891	3300010398	Tropical Forest Soil	WAFSRLAAGRDAVVLRGRYVVARRLAALPVIVRASSPGLLFEAVFERRAQELGIVVVGSRPRRPTPLLLRPVLRFLAA*
Ga0137432_12806262	3300011439	Soil	AAGRDAVVLRGRYVVARRLAVLPVVVRASGPGVLFEAVFERRAQELGIDIVGSRPRSPVPLLLRPVLRFLAA*
Ga0137452_10426272	3300011441	Soil	KPTSLAPLAWALSRIAAGRDAVVLRSRYVVARRLAVLPVIVRAAGPGVLFEAVFERRAQELGIDIVGSRPRSPVPLLLRPVLRFLAA*
Ga0137320_11077132	3300012172	Soil	LTAGRDAVVLRGRYVVARRLAVLPVVVRAAGPGVLFEAVFERRAQELGIDIVGSRPRSPVPLLLRPVLRFLAA*
Ga0137362_105597101	3300012205	Vadose Zone Soil	LAPLGWALSRLASGREAVILRGRYIVARRLLALPIIVRASGPGILFEHVFERRAEELGIDVVGSRPKRTTPLFLRPVLRFLAA*
Ga0150985_1174075102	3300012212	Avena Fatua Rhizosphere	RGRYIVARRLLALPIIVRASGPGLLFEHVFERRCKDLGIDIVGTRPRNPAPLLLRPVLRFLAA*
Ga0150984_1124887182	3300012469	Avena Fatua Rhizosphere	GRYIVARRLMLLPVIVRASGPGLLFEPIFERRAQELGIDVVGSRPKMPMPLLLRPVLRFLAA*
Ga0157299_102354822	3300012899	Soil	RLAAGRDAVVLRGRYVVARRLAVLPVVVRASGPGVLFEAVFERRAQELGIDIVGSRPRRPVPLLLRPVLRFLAA*
Ga0157310_104794181	3300012916	Soil	WALSRIAAGRDGVVLRGRYVVARRLAVLPVVVRAAGPGVLFEAVFERRAQELGIDIAGSRPRRPVPLLLRPVLRFLAA*
Ga0137359_113930292	3300012923	Vadose Zone Soil	AVILRGRYIVARRLMALPVIVRASGPGLLFEPIFERRAQELGIDVVGSRRKRPTPLLLRPVLRFLAA*
Ga0137419_110620432	3300012925	Vadose Zone Soil	GREAVILRGRYIVARRLLALPVIVRASGPGLFFEHLFERRARDLGIDIVGTRPRNPAPLLLRPVLRFLAA*
Ga0164299_112032122	3300012958	Soil	VSLAPLGWALSRLEAGREAVILRGRYIVARRLLALPIIVRASGPGLLFEHVFERRGKDLGIDIVGTRPRNPAPLLLRPVLRFLAA*
Ga0126369_110883222	3300012971	Tropical Forest Soil	RLAAGREAVILRGRYIVARRLLALPVIVRASGPGLLFEHVFERRAQELGIDVVGSRPRRPMPLLLRPVLRFLAA*
Ga0126369_119910651	3300012971	Tropical Forest Soil	MEGGRSVSLAPLGWALSRLEAGREAVILRGRYIVARRLLALPIIVRASGPGLLFEHVFERRGKDLGIDIVGTRPRNPAPLLLRPVLRFLAA*
Ga0164307_116753611	3300012987	Soil	WALSRLAAGREAVILRGRYIVARRLLALPVIVRASSPRLLFEHVFERRAQELGIDVVGSRPKPPMPFLLRPVLRFLTA*
Ga0164305_102838331	3300012989	Soil	DVVVLVDASKPVSLAPLAWALSRLATGRHAVVLRGRYVVARRLAVLPVIVRAAGPGVLFEAVFESRAQELGIDIVGSRPRRPVPLLLRPVLRFLAA*
Ga0157374_115440341	3300013296	Miscanthus Rhizosphere	VLRGRYLVARRLAALPVIVRASGPGLLFEAVFERRAQELGVDVVGSRPRPPMPLLLRPVLRFLAA*
Ga0157372_113995911	3300013307	Corn Rhizosphere	GWALSRLAAGRDAVVLRGRYVVARRLAALPVIVRASTPGLLFEAVFERRAQELGIVVVGSRPRRPTPLLLRPVLRFLAA*
Ga0157372_123366062	3300013307	Corn Rhizosphere	SVSLAPLGLALSRLEAGREAVILRGRYIVARRLLALPIIVRASGPGLLFEHVFERRGKDLGIDIVGTRPRNPAPLLLRPVLRFLAA*
Ga0157372_125526331	3300013307	Corn Rhizosphere	NRRTTLAPLGWALSRLAAGRDAVILRDRYVVARLRPVLPVLARASGPGLLFESLFERRAQALGLDVVGSRAVQKGATSLLLGPVLRFLAA*
Ga0163163_109930591	3300014325	Switchgrass Rhizosphere	LAWALSRIASGRDAVVLRGRYVVARRLAALPVIVRAAGPGVLFEAVFESRAQELGVDIVGSRPRRPVPLLLRPVLRFLAA*
Ga0157376_121790001	3300014969	Miscanthus Rhizosphere	IVLMEAGRRSSLAPLGWALSRLAAGRDAVVLRGRYIVARRLAAMPVVVRASGPGLLFEPVFERRAQELGIDVIGSRPRGSMPLLLRPVLRFLAA*
Ga0132258_135352562	3300015371	Arabidopsis Rhizosphere	LAAGREAVILRGRYIVARRLMALPVIVRASGPGLLFEHVFERRAEELGIDVVGSRQRRPMPLLLRPVLRFLAA*
Ga0132255_1003468671	3300015374	Arabidopsis Rhizosphere	DASKPASLAPLAWALSRIAAGRDAVVLRGRYVVGRRLGVLPVIVRAAGPSVLFEAVFERRAQELGVDIVGSRPRRPVPLLLRPVLRFLAA*
Ga0182035_119368442	3300016341	Soil	GDVVVLLDAGKQASLAPLAWALSRLAAGRDAVVLRGRYVVARRLRALPVIVRASGPGLLFEPVFERRAQELGIDVVGSRPRRPMPFLLRPVLRFLAA
Ga0163161_107223791	3300017792	Switchgrass Rhizosphere	AVVLRGRYIVARRLTVLPVVVRAAGPGVLFEAVFEQRAQELGIDIVGSRSRRPVPLLLRPVLRFLAA
Ga0066667_121241132	3300018433	Grasslands Soil	GAGRDAVVLRGRYLVARRLAALPVIVRASGPGLLFEAVFERRAQELGIDVVGSRPRSPMPLLLRPVLRFLAA
Ga0190274_110926772	3300018476	Soil	LAAGRDAVVLRGRYVVARRLAVLPVIVRASGPGMLFEAVFERRAQELGIDIVGSRPRSPVPLLLRPVLRFLAA
Ga0190274_130852091	3300018476	Soil	AGKPAPLAPLAWALSRIGAGRDAVVLRGRYVVARRLAALPIIVRASGPGLLFEPVFERRAQELGVDIVGSRPRSPMPLLLRPVLRFLAA
Ga0193696_11334181	3300020016	Soil	LAPLAWALSRIAAGRDAVVLRGRYVVARRLAVLPVVVRASGPGVLFEAVFERRAQELGIDIVGSRPRSPVPLLLRPVLRFLAA
Ga0206352_106911931	3300020078	Corn, Switchgrass And Miscanthus Rhizosphere	AISLAPLGWALSRLAAGREAVVLRGRYVVARRLAALPVIVRASRPGLFFEAVFERRAQELGIDVVGSRPRRPTPLLLRPVLRFLAA
Ga0210396_109698081	3300021180	Soil	DAVVLRGRYLVARRLAALPVIVRASGPGLLFEAVFERRAQELGIDVVGSRPRSPMPLLLRPVLRFLAA
Ga0210390_108465031	3300021474	Soil	LSRIAAGRDAVVLRGRYVVARRLAALPIIVRASGPGLLFEPVFERRAQELGIDIVGSRPRRQMPFLLRPVLRFLAA
Ga0242675_10250491	3300022718	Soil	RLGAGRDAVVLRGRYLVARRLAALPVIVRASGPGLLFEAVFERRAQELGIDVVGSRPRPPMPLLLRPVLRFLAA
Ga0247802_10732911	3300023077	Soil	ASGRDAVVLRGRYVVARRLAALPVIVRAAGPGVLFEAVFESRAQELGVDIVGSRPRRPVPLLLRPVLRFLAA
Ga0208357_10542401	3300025703	Arctic Peat Soil	LRGRYVVARRLSALPIIVRASGPGLLFEAVFERRAQELGIDVVGSRPRRQTPFLLRPVLRFLAA
Ga0207692_110471221	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	RLASGRDAVVLRGRYVVARRLAALPVIVRASRPGLFFEALFERRAQELGIDVVGSRPRRPTPLLLRPVLRFLAA
Ga0207642_100520253	3300025899	Miscanthus Rhizosphere	GDVVVLLDASKPVSLAPLAWALSRLGSGRDAVVLRGRYIVARRLTVLPVVVRAAGPGVLFEAVFEQRAQELGIDIVGSRSRRPVPLLLRPVLRFLAA
Ga0207680_102007131	3300025903	Switchgrass Rhizosphere	AGGRDAVVLRGRYVVARRLAALPVIVRAAGPGVLFEAVFERRAQELGIDIVGSRPRRPVPLLLRPVLRFLAA
Ga0207652_108808261	3300025921	Corn Rhizosphere	RLEAGREAVILRGRYIVARRLLALPIIVRASGPGLLFEHVFERRGKDLGIDIVGTRPRNPAPLLLRPVLRFLAA
Ga0207701_111594412	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	GREAVILRGRYIVARRLMALPVIVRASGPGLLFEPIFERRAQELGVDVVGSRPKQPTPLLLRPVLRFLAA
Ga0207689_102510651	3300025942	Miscanthus Rhizosphere	ALSRLGSGRDAVVLRGRYIVARRLTVLPVVVRAAGPGVLFEAVFEQRAQELGIDIVGSRSRRPVPLLLRPVLRFLAA
Ga0207679_111511092	3300025945	Corn Rhizosphere	LRGRYVVARRLAALPVIVRAAGPGVLFEAVFESRAQELGVDIVGSRPRRPVPLLLRPVLRFLAA
Ga0207640_108617692	3300025981	Corn Rhizosphere	LLDASKPVSLAPLAWALSRLGSGRDAVVLRGRYIVARRLTVLPVVVRAAGPGVLFEAVFEQRAQELGIDIVGSRSRRPVPLLLRPVLRFLAA
Ga0207677_121884711	3300026023	Miscanthus Rhizosphere	LAWALSRLGSGRDAVVLRGRYIVARRLTVLPVVVRAAGPGVLFEAVFEQRAQELGIDIVGSRSRRPVPLLLRPVLRFLAA
Ga0207674_119632042	3300026116	Corn Rhizosphere	TSLAPLAWALSRLAAGRDAVVLRGRYVVARRLAVLPVVVRASGPGVLFEAVFERRAQELGIDIVGSRPRRPVPLLLRPVLRFLAA
Ga0207675_10000316114	3300026118	Switchgrass Rhizosphere	GRDAVVLRGRYIVARRLTVLPVVVRAAGPGVLFEAVFEQRAQELGIDIVGSRSRRPVPLLLRPVLRFLAA
Ga0207683_108464062	3300026121	Miscanthus Rhizosphere	VVLRGRYVVARRLAAMPVIVRATGPGLLFEAVFERRSHELGIDVVGSRPDRPMPFLLRPVLRFLAA
Ga0207683_114674551	3300026121	Miscanthus Rhizosphere	GRDAVVLRGRYVVARRLAALPVIVRAAGPGVLFEAVFESRAQELGIDILGSRPRRPVPLLLRPVLRFLAA
Ga0209167_107552812	3300027867	Surface Soil	SLAPLGWALSRLVAGRDAVVLRGRYVVARRLKALPVIVRASTPGLLFEAVFERRAQELGIDVVGSRPRRPMPLLLRPVLRFLAA
Ga0247662_10079303	3300028293	Soil	RRGPSLAWALSRIATGRDAVVLRGRYIVARRLAVLPVVVRAAGPGVLFEAVFEQRAQELGIDIVGSRSRRPVPLLLRPVLRFLAA
Ga0247828_111326272	3300028587	Soil	GNGRDAVVLRGRYIVARRLTVLPVVVRAAGPGVLFEAVFEQRAQELGIDIVGSRSRRPVPLLLRPVLRFLAA
Ga0307311_102647911	3300028716	Soil	RLAAGRDAVVLRGRYVVARRLAVLPVIVRAAGPGVLFEAVFERRAQELGIDIVGSRARRPVPLLLRPVLRFLAA
Ga0311360_108347551	3300030339	Bog	LGRALSRLAAGREAVILRGRYIVARRLLALPIIVRATGPSLLFERVFERRAQDLGIDVVGSRPVVATGTTARLLAPVLRFLAA
Ga0265325_103441731	3300031241	Rhizosphere	GGKQPPLAPLGWALSRLAAGREAVILRGRYIVARRLLALPIIVRATGPSLLFERIFERRAQDLGIDVVGSRPVLATTTNRLLAPLLRLLAA
Ga0265331_104034272	3300031250	Rhizosphere	LMEGGRTVSLAPLGWALSRLEAGREAVILRGRYIVARRLLALPIIVRASGPGMFFEHVFERRGKDLGIDIVGTRPRNPAPLLLRPVLRFLAA
Ga0170818_1138989501	3300031474	Forest Soil	GRSVSLAPLGWALSRLEAGREAVILRGRYIVARRLLALPIIVRASGPGLLFEHVFERRGKDLGIDIVGTRPRNPAPLLLRPVLRFLAA
Ga0318538_104874371	3300031546	Soil	GAGRDAVVLRGRYVVARRLRALPVIVRASGPGLLFEPVFERRAQELGIDVVGSRPRRPMPFLLRPVLRFLAA
Ga0310887_110973021	3300031547	Soil	PTSLAPLAWALSRIAAGRDAVVLRGRYVVARRLAVLPVVVRASGPGVLFEAVFERRAQELGIDIVGSRPRSPVPLLLRPVLRFLAA
Ga0318555_104793262	3300031640	Soil	PGPLAPLAWALSRLAKGRDAVVLRGRYVVARRLRALPVIVRASGPGLLFEPVFERRAQELGIDVVGSRPRRPMPFLLRPVLRFLAA
Ga0318542_103940252	3300031668	Soil	LEASRTVSFAPLGWALSRLTAGREAVILRGRYIVARRLMALPVIVRASGPGLLFEPLFERRAQELGIDVVGSRRKQPTPLLLRPVLRFLAA
Ga0310813_102025373	3300031716	Soil	VLIDASKPVSLAPLAWALSRIATGRDAVVLRGRYIVARRLAVLPVVVRAAGPGVLFEAVFEQRAQELGIDIVGSRSRRPVPLLLRPVLRFLAA
Ga0318493_104269642	3300031723	Soil	LAAGRDAVVLRGRYVVARRLPALPVIVRASGPGMLFEPVFERRAQELGIDIIGSRPRGRMPLLLRPVLRFLAA
Ga0302321_1013365071	3300031726	Fen	GWALSRLGAGRDAVVLRGRYLVARRLAALPVIVRASGPGLLFEAVFERRAQELGIDVVGSRPRPPMPLLLRPVLRFLAA
Ga0302321_1022391192	3300031726	Fen	VILRGRYIVARRLLALPIIVRATGPSLLFERVFERRAQDLGIDVVGSRPVVATGTTARLLAPVLRFLAA
Ga0306918_108670612	3300031744	Soil	PLAWALSRLGAGRDAVVLRGRYVVARRLRALPVIVRASGPGLLFEPVFERRAQELGIDVVGSRPRRPMPFLLRPVLRFLAA
Ga0318546_103581561	3300031771	Soil	LGWALSRLAAGREAVILRNRYIVARRLMSLPVIVRASGPGLLFEPLFERRAQELGIDVVGSRRKQPTPLLLRPVLRFLAA
Ga0318546_106599831	3300031771	Soil	SLAPLGWALSRLAAGRDAVVLRGRYVVARRLPALPVIVRASGPGMLFEPVFERRAQELGIDIIGSRPRGRMPLLLRPVLRFLAA
Ga0318576_103882932	3300031796	Soil	VLLLDAGKPASLAPLGWALSRLAAGRDAVVLRGRYVVARRLPALPVIVRASGPGMLFEPVFERRAQELGIDIIGSRPRGRMPLLLRPVLRFLAA
Ga0318565_103921931	3300031799	Soil	GSAVVLLEASRTVSFAPLGWALSRLAAGREAVILRGRYIVARRLMALPVIVRASGPGLLFEPIFERRAQELGIDIVGSRPKQPMPFLLRPVLRFLAA
Ga0318564_101091892	3300031831	Soil	VILRNRYIVARRLMSLPVIVRASGPGLLFEPLFERRAQELGIDVVGSRRKQPTPLLLRPVLRFLAA
Ga0318512_106298451	3300031846	Soil	PLGWALSRLAAGREAVILRNRYIVARRLMSLPVIVRASGPGLLFEPIFERRAQELGIDIVGSRPKQPMPFLLRPVLRFLAA
Ga0310904_101187071	3300031854	Soil	GRDAVVLRGRYVVARRLAVLPVIVRAAGPGVLFEAVFERRAQELGIDIVGTRPRSPVPLLLRPVLRFLAA
Ga0310892_102017951	3300031858	Soil	LAPLAWALSRLGNGRDAVVLRGRYIVARRLTVLPVVVRAAGPGVLFEAVFEQRAQELGIDIVGSRSRRPVPLLLRPVLRFLAA
Ga0318495_105331661	3300031860	Soil	LEASRTVSFAPLGWALSRLVAGREAVILRGRYIVARRLMALPVIVRASGPGLLFEPIFERRAQELGIDIVGSRPKQPMPFLLRPVLRFLAA
Ga0318520_104692301	3300031897	Soil	GWALSRLAAGREAVILRNRYIVARRLMSLPVIVRASGPGLLFEPLFERRAQELGIDVVGSRRKQPTPLLLRPVLRFLAA
Ga0308174_102871122	3300031939	Soil	LRGRYLVARRLAALPVIVRASAPGLLFEAVFERRAQELGVDVVGSRPRSPMPLLLRPVLRFLAA
Ga0310912_115103901	3300031941	Soil	AVVLRGRYVVARRLRALPVIVRASGPGLLFEPVFERRAQELGIDVVGSRPRRPMPFLLRPVLRFLAA
Ga0310916_117083491	3300031942	Soil	IVVLLEASRTVSFAPLGWALSRLTAGREAVILRGRYIVARRLMALPVIVRASGPGLLFEPLFERRAQELGIDIVGSRPKRPTPLLLRPVLRFLAA
Ga0310885_102059781	3300031943	Soil	SLAPLAWALSRLGNGRDAVVLRGRYIVARRLTVLPVVVRAAGPGVLFEAVFEQRAQELGIDIVGSRSRRPVPLLLRPVLRFLAA
Ga0310913_101253973	3300031945	Soil	KQASLAPLAWALSRLGAGRDAVVLRGRYVVARRLRALPVIVRASGPGLLFEPVFERRAQELGIDVVGSRPRRPMPFLLRPVLRFLAA
Ga0310909_102661151	3300031947	Soil	VVLLDAGKQASLAPLAWALSRLGAGRDAVVLRGRYVVARRLRALPVIVRASGPGLLFEPVFERRAQELGIDVVGSRPRRPMPFLLRPVLRFLAA
Ga0308176_116098742	3300031996	Soil	GRYVVARRLAALPVIVRASRPGLFFEALFERRAQELGIDVVGSRPRRPTPLLLRPVLRFLAA
Ga0306922_123930931	3300032001	Soil	WALSRLAAGREAVILRGRYIVARRLMALPVIVRASGPGLLFEPIFERRAQELGIDIVGSRPKQPMPFLLRPVLRFLAA
Ga0310897_100853562	3300032003	Soil	RLGNGRDAVVLRGRYIVARRLTVLPVVVRAAGPGVLFEAVFEQRAQELGIDIVGSRSRRPVPLLLRPVLRFLAA
Ga0318506_104697351	3300032052	Soil	GDVVVLLDAGKQASLAPLAWALSRLGAGRDAVVLRGRYVVARRLRALPVIVRASGPGLLFEPVFERRAQELGIDVVGSRPRRPMPFLLRPVLRFLAA
Ga0318513_103129142	3300032065	Soil	FAPLGWALSRLAAGREAVILRNRYIVARRLMSLPVIVRASGPGLLFEPLFERRAQELGIDVVGSRRKQPTPLLLRPVLRFLAA
Ga0318553_104852171	3300032068	Soil	LSRLAAGREAVILRGRYIVARRLMALPVIVRASGPGLLFEPIFERRAQELGIDIVGSRPKQPMPFLLRPVLRFLAA
Ga0335069_117159211	3300032893	Soil	ILRGRYIVARRLMALPVIVRASGPGLLFEPIFERRAQELGIDVVGSRRKEPTPFLLRPVLRFLAA
Ga0370493_0009590_2592_2792	3300034129	Untreated Peat Soil	LRGRYIVARRLLALPIIVRATGPSLLFERIFERRAQDLGIDVVGSRPVRSTTTNRLLAPLLRLLAA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F060790

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences