Metagenome Family F060764

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F060764
Family Type	Metagenome
Number of Sequences	132
Average Sequence Length	47 residues
Representative Sequence	MSLVDRVRALLGDDAVDVAATPDGVPRVAPGSPDAVALLLGTAREE
Number of Associated Samples	107
Number of Associated Scaffolds	132

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	72.73 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	80.30 %
Associated GOLD sequencing projects	100
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (71.970 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (26.515 % of family members)
Environment Ontology (ENVO)	Unclassified (57.576 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (67.424 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 33.78% β-sheet: 5.41% Coil/Unstructured: 60.81%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.49
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.49
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 132 Family Scaffolds
PF02913	FAD-oxidase_C	85.61
PF04545	Sigma70_r4	6.06
PF02190	LON_substr_bdg	5.30
PF01761	DHQ_synthase	1.52
PF07244	POTRA	0.76
PF01872	RibD_C	0.76

COG ID	Name	Functional Category	% Frequency in 132 Family Scaffolds
COG0277	FAD/FMN-containing lactate dehydrogenase/glycolate oxidase	Energy production and conversion [C]	85.61
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.76
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.76

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	71.97 %
Unclassified	root	N/A	28.03 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	71.97 %
Unclassified	root	N/A	28.03 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	71.97 %
Unclassified	root	N/A	28.03 %

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	37.88 %
Unclassified	root	N/A	28.03 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	37.88 %
Unclassified	root	N/A	28.03 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.03 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	7.58 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	6.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.03 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	6.82 %
Gemmatimonadetes bacterium GWC2_71_9	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium GWC2_71_9	3.79 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	3.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.03 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	6.82 %
Gemmatimonadetes bacterium GWC2_71_9	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium GWC2_71_9	3.79 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	3.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.03 %
Gemmatimonadetes bacterium GWC2_71_9	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium GWC2_71_9	3.79 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	3.79 %
Gemmatimonas	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas	3.03 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.03 %
Gemmatimonadetes bacterium GWC2_71_9	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium GWC2_71_9	3.79 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	3.79 %
Gemmatimonas aurantiaca	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → Gemmatimonas aurantiaca	1.52 %
unclassified Gemmatimonas	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → unclassified Gemmatimonas	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.03 %
Gemmatimonadetes bacterium GWC2_71_9	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium GWC2_71_9	3.79 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	3.79 %
Gemmatimonas aurantiaca	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → Gemmatimonas aurantiaca	1.52 %
Gemmatimonas sp.	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → unclassified Gemmatimonas → Gemmatimonas sp.	0.76 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001661\|JGI12053J15887_10156338	Not Available	1193	Open in IMG/M
3300002557\|JGI25381J37097_1012057	All Organisms → cellular organisms → Bacteria	1523	Open in IMG/M
3300002557\|JGI25381J37097_1068842	All Organisms → cellular organisms → Bacteria	571	Open in IMG/M
3300002911\|JGI25390J43892_10007878	All Organisms → cellular organisms → Bacteria	2439	Open in IMG/M
3300002911\|JGI25390J43892_10057191	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	913	Open in IMG/M
3300005166\|Ga0066674_10536296	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300005167\|Ga0066672_10863778	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300005172\|Ga0066683_10885572	All Organisms → cellular organisms → Bacteria	512	Open in IMG/M
3300005174\|Ga0066680_10010950	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	4657	Open in IMG/M
3300005175\|Ga0066673_10603746	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	638	Open in IMG/M
3300005445\|Ga0070708_100491150	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1158	Open in IMG/M
3300005447\|Ga0066689_10643149	Not Available	667	Open in IMG/M
3300005450\|Ga0066682_10513971	All Organisms → cellular organisms → Bacteria	759	Open in IMG/M
3300005451\|Ga0066681_10459215	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	782	Open in IMG/M
3300005467\|Ga0070706_100950337	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	793	Open in IMG/M
3300005536\|Ga0070697_100755717	Not Available	859	Open in IMG/M
3300005540\|Ga0066697_10402935	Not Available	794	Open in IMG/M
3300005556\|Ga0066707_10260702	Not Available	1132	Open in IMG/M
3300005558\|Ga0066698_10038845	All Organisms → cellular organisms → Bacteria	2945	Open in IMG/M
3300005558\|Ga0066698_10618296	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	727	Open in IMG/M
3300005560\|Ga0066670_10037147	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → unclassified Gemmatimonas → Gemmatimonas sp.	2431	Open in IMG/M
3300005560\|Ga0066670_10262114	Not Available	1048	Open in IMG/M
3300005568\|Ga0066703_10482663	Not Available	738	Open in IMG/M
3300005569\|Ga0066705_10054390	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2259	Open in IMG/M
3300005576\|Ga0066708_10261481	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1102	Open in IMG/M
3300005586\|Ga0066691_10050274	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2231	Open in IMG/M
3300005586\|Ga0066691_10320542	Not Available	916	Open in IMG/M
3300006031\|Ga0066651_10387557	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	746	Open in IMG/M
3300006794\|Ga0066658_10354828	Not Available	786	Open in IMG/M
3300006806\|Ga0079220_10013447	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	3260	Open in IMG/M
3300006806\|Ga0079220_10668991	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	755	Open in IMG/M
3300006903\|Ga0075426_10403818	Not Available	1008	Open in IMG/M
3300007004\|Ga0079218_12056503	Not Available	655	Open in IMG/M
3300007255\|Ga0099791_10584567	Not Available	545	Open in IMG/M
3300009012\|Ga0066710_100206153	All Organisms → cellular organisms → Bacteria	2804	Open in IMG/M
3300009012\|Ga0066710_103180871	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	632	Open in IMG/M
3300009012\|Ga0066710_103599400	All Organisms → cellular organisms → Bacteria	584	Open in IMG/M
3300009012\|Ga0066710_104364488	All Organisms → cellular organisms → Bacteria	528	Open in IMG/M
3300009012\|Ga0066710_104380660	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300009090\|Ga0099827_10280465	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium GWC2_71_9	1406	Open in IMG/M
3300010304\|Ga0134088_10248365	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	856	Open in IMG/M
3300010320\|Ga0134109_10007307	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	3049	Open in IMG/M
3300010321\|Ga0134067_10074379	Not Available	1129	Open in IMG/M
3300010322\|Ga0134084_10012238	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2190	Open in IMG/M
3300010333\|Ga0134080_10159494	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	960	Open in IMG/M
3300010335\|Ga0134063_10463939	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	629	Open in IMG/M
3300010337\|Ga0134062_10754890	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300010364\|Ga0134066_10332476	Not Available	557	Open in IMG/M
3300012096\|Ga0137389_10377018	All Organisms → cellular organisms → Bacteria	1209	Open in IMG/M
3300012168\|Ga0137357_1097160	Not Available	606	Open in IMG/M
3300012189\|Ga0137388_11463403	All Organisms → cellular organisms → Bacteria	621	Open in IMG/M
3300012198\|Ga0137364_10289623	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium GWC2_71_9	1214	Open in IMG/M
3300012198\|Ga0137364_10972450	Not Available	642	Open in IMG/M
3300012198\|Ga0137364_11455476	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300012204\|Ga0137374_10143997	All Organisms → cellular organisms → Bacteria	2142	Open in IMG/M
3300012206\|Ga0137380_11662677	Not Available	523	Open in IMG/M
3300012208\|Ga0137376_10088344	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas	2610	Open in IMG/M
3300012208\|Ga0137376_11517986	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300012208\|Ga0137376_11761070	All Organisms → cellular organisms → Bacteria	510	Open in IMG/M
3300012210\|Ga0137378_11209104	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	672	Open in IMG/M
3300012211\|Ga0137377_11368768	Not Available	637	Open in IMG/M
3300012231\|Ga0137465_1017312	All Organisms → cellular organisms → Bacteria	2092	Open in IMG/M
3300012349\|Ga0137387_10514326	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	869	Open in IMG/M
3300012358\|Ga0137368_10189299	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1475	Open in IMG/M
3300012362\|Ga0137361_11205475	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	680	Open in IMG/M
3300012582\|Ga0137358_10348050	Not Available	1004	Open in IMG/M
3300012917\|Ga0137395_10997729	Not Available	600	Open in IMG/M
3300012918\|Ga0137396_10388780	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1034	Open in IMG/M
3300012972\|Ga0134077_10026047	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2047	Open in IMG/M
3300012972\|Ga0134077_10126944	Not Available	1005	Open in IMG/M
3300012972\|Ga0134077_10264240	Not Available	715	Open in IMG/M
3300012975\|Ga0134110_10594883	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300012976\|Ga0134076_10206662	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	825	Open in IMG/M
3300012976\|Ga0134076_10366373	All Organisms → cellular organisms → Bacteria	636	Open in IMG/M
3300014150\|Ga0134081_10221822	Not Available	650	Open in IMG/M
3300014154\|Ga0134075_10207691	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	843	Open in IMG/M
3300014865\|Ga0180078_1090408	Not Available	534	Open in IMG/M
3300015054\|Ga0137420_1259367	All Organisms → cellular organisms → Bacteria	1272	Open in IMG/M
3300015357\|Ga0134072_10166420	Not Available	738	Open in IMG/M
3300015358\|Ga0134089_10071665	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium GWC2_71_9	1294	Open in IMG/M
3300017654\|Ga0134069_1216350	All Organisms → cellular organisms → Bacteria	658	Open in IMG/M
3300017656\|Ga0134112_10317506	All Organisms → cellular organisms → Bacteria	629	Open in IMG/M
3300017966\|Ga0187776_10371602	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	949	Open in IMG/M
3300018089\|Ga0187774_10093852	Not Available	1461	Open in IMG/M
3300018431\|Ga0066655_10568308	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	760	Open in IMG/M
3300018431\|Ga0066655_11075836	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300018466\|Ga0190268_10579780	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	788	Open in IMG/M
3300018468\|Ga0066662_10758669	All Organisms → cellular organisms → Bacteria	935	Open in IMG/M
3300018468\|Ga0066662_12637772	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300018468\|Ga0066662_12803999	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300019866\|Ga0193756_1000859	All Organisms → cellular organisms → Bacteria	2742	Open in IMG/M
3300019883\|Ga0193725_1043735	Not Available	1162	Open in IMG/M
3300024179\|Ga0247695_1049137	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	614	Open in IMG/M
3300024246\|Ga0247680_1004731	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → Gemmatimonas aurantiaca	2144	Open in IMG/M
3300024330\|Ga0137417_1484531	All Organisms → cellular organisms → Bacteria	2326	Open in IMG/M
3300025326\|Ga0209342_10779836	Not Available	755	Open in IMG/M
3300025885\|Ga0207653_10002695	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	5643	Open in IMG/M
3300025905\|Ga0207685_10272158	Not Available	828	Open in IMG/M
3300025939\|Ga0207665_10092593	All Organisms → cellular organisms → Bacteria	2097	Open in IMG/M
3300026295\|Ga0209234_1048276	All Organisms → cellular organisms → Bacteria	1618	Open in IMG/M
3300026297\|Ga0209237_1016675	All Organisms → cellular organisms → Bacteria	4274	Open in IMG/M
3300026297\|Ga0209237_1268290	Not Available	523	Open in IMG/M
3300026301\|Ga0209238_1007822	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	4238	Open in IMG/M
3300026301\|Ga0209238_1227744	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300026306\|Ga0209468_1171874	All Organisms → cellular organisms → Bacteria	549	Open in IMG/M
3300026308\|Ga0209265_1187224	Not Available	550	Open in IMG/M
3300026310\|Ga0209239_1030905	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2548	Open in IMG/M
3300026314\|Ga0209268_1126181	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	638	Open in IMG/M
3300026316\|Ga0209155_1274761	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300026320\|Ga0209131_1069385	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1930	Open in IMG/M
3300026324\|Ga0209470_1080665	All Organisms → cellular organisms → Bacteria	1490	Open in IMG/M
3300026324\|Ga0209470_1313267	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300026326\|Ga0209801_1316291	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	552	Open in IMG/M
3300026327\|Ga0209266_1009866	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	5557	Open in IMG/M
3300026327\|Ga0209266_1291960	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300026335\|Ga0209804_1027840	All Organisms → cellular organisms → Bacteria	2887	Open in IMG/M
3300026523\|Ga0209808_1118436	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1090	Open in IMG/M
3300026524\|Ga0209690_1070955	All Organisms → cellular organisms → Bacteria	1489	Open in IMG/M
3300026532\|Ga0209160_1001168	All Organisms → cellular organisms → Bacteria	21965	Open in IMG/M
3300026532\|Ga0209160_1014249	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → Gemmatimonas aurantiaca	5613	Open in IMG/M
3300026538\|Ga0209056_10198793	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	1470	Open in IMG/M
3300026540\|Ga0209376_1387218	Not Available	523	Open in IMG/M
3300027671\|Ga0209588_1138447	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	774	Open in IMG/M
3300027765\|Ga0209073_10046318	All Organisms → cellular organisms → Bacteria	1412	Open in IMG/M
3300027787\|Ga0209074_10453228	Not Available	548	Open in IMG/M
3300027882\|Ga0209590_10164992	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium GWC2_71_9	1382	Open in IMG/M
3300028381\|Ga0268264_10374643	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium GWC2_71_9	1362	Open in IMG/M
3300031708\|Ga0310686_114367437	Not Available	636	Open in IMG/M
3300031820\|Ga0307473_10468759	Not Available	843	Open in IMG/M
3300031962\|Ga0307479_10858566	Not Available	881	Open in IMG/M
3300032180\|Ga0307471_103894645	All Organisms → cellular organisms → Bacteria	528	Open in IMG/M
3300032783\|Ga0335079_11930732	Not Available	571	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.48%
Host-Associated	Host-Associated	1.52%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	96.21%
Aquatic	Environmental → Aquatic	2.27%
Plants	Host-Associated → Plants	1.52%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	96.21%
Sediment	Environmental → Aquatic → Sediment	2.27%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.76%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.76%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	86.36%
Loam	Environmental → Terrestrial → Soil → Loam	7.58%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.27%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.27%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.76%

Habitat	Taxonomy	Distribution
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	42.42%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	36.36%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.55%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.79%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.79%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.27%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.27%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.52%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.76%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.76%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.76%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	26.52%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	18.18%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	15.91%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	15.15%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.55%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.03%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	2.27%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.27%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.52%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.52%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.52%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.76%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.76%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.76%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.76%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.76%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm	Environmental	Open in IMG/M
3300002911	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010364	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09212015	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012168	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT860_2	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012231	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT828_2	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300014150	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300014865	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT499_16_10D	Environmental	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300017654	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300018089	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MG	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019866	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1m1	Environmental	Open in IMG/M
3300019883	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a2	Environmental	Open in IMG/M
3300024179	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK36	Environmental	Open in IMG/M
3300024246	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK21	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025326	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_2 (SPAdes)	Environmental	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026295	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026297	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026306	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102 (SPAdes)	Environmental	Open in IMG/M
3300026308	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103 (SPAdes)	Environmental	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026314	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143 (SPAdes)	Environmental	Open in IMG/M
3300026316	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122 (SPAdes)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300026326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)	Environmental	Open in IMG/M
3300026327	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)	Environmental	Open in IMG/M
3300026335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)	Environmental	Open in IMG/M
3300026523	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157 (SPAdes)	Environmental	Open in IMG/M
3300026524	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)	Environmental	Open in IMG/M
3300026532	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)	Environmental	Open in IMG/M
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12053J15887_101563381	3300001661	Forest Soil	MSLLDRVRALLGDDAVDVAATPDGVPRVAPGSPDAVALLLGTAREEGWRV
JGI25381J37097_10120571	3300002557	Grasslands Soil	MSLLDRVRALLGDDAVEIAGGADAVPRVAPASPDAVALLLGTAREEGW
JGI25381J37097_10688421	3300002557	Grasslands Soil	MSLLDRVRALLGDDAVDVAATPDGVPRVAPGSPDAVALLLGTAREERWRVRVEGAGTWLPVDAPADL
JGI25390J43892_100078781	3300002911	Grasslands Soil	MSLLDRVRALLGDDAVEIAGGADAVPRVAPASPDAVALLLGTAREEGWRVRLEGAGTWL
JGI25390J43892_100571912	3300002911	Grasslands Soil	MSLLERVRALLGDDAVEIAGGPDAVPRVAPASPDAVALLLGT
Ga0066674_105362962	3300005166	Soil	MSLVDRVRALLGDDAVDVAATPDGVPRVAPGSPDAVGLLLGTAREEGWRVRV
Ga0066672_108637781	3300005167	Soil	MSLVDRVRALLGDDAVDVAATPDGVPRVAPGSPDAVGLLLGTAREEGWRV
Ga0066683_108855722	3300005172	Soil	MSLVDRVRALLGDDAVDVAATPDGVPRVAPGSPDAVGLLLGTAREEGW
Ga0066680_100109505	3300005174	Soil	MSLLDKVRALLGRDAVLEGPASGEIPRVAPPTPDAVALLLGT
Ga0066673_106037462	3300005175	Soil	MSLLDKVRALLGRDAVLEGPASGEIPRVAPPTPDAVALLLGTAHEEGWRVRV
Ga0070708_1004911502	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MSLLDRVRALLGSDALLESAGPDGVPRVAPDSPDAVALLLGTAREEGW
Ga0066689_106431491	3300005447	Soil	MSLLDRVRALLGDDAVEIASGPDAVPRVAPASPDAVALLLGT
Ga0066682_105139712	3300005450	Soil	MSLLDRVRALLGDDAVDVAATPDGVPRVAPGSPDAVALLLGTAREERWRVRVEGAGTWLP
Ga0066681_104592151	3300005451	Soil	MSLVDRVRALLGDDAVDVAATPDGVPRVAPGSPDAVALLLGTAREEGWRVRVE
Ga0070706_1009503372	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MSLLDRVRALLGDDAVDVAATRDGVPRVAPASPDAVALLLGTARAEGWRVRI
Ga0070697_1007557172	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MERVGGVSILERVRALLGTEAVDLTAERDGVPRVAPPTIDAVALLL
Ga0066697_104029351	3300005540	Soil	MSLVDRVRALLGEDAVDVAATRDGVPRVAPGSPDAVALLLGTARE
Ga0066707_102607021	3300005556	Soil	VSLLDRVRALLGDDAVDVPATHDGVPRVAPGSPDAVALLLGTARSEGWR
Ga0066698_100388454	3300005558	Soil	MGGRRVSLLDKVRALLGGDAVLEGPASGEVPRVAPPTPDAVALLLGTAHEEGWRVRVEGTGSW
Ga0066698_106182961	3300005558	Soil	MSLVDRVRALLGDDAVDVATTPDGVPRVAPGSPDAVALLLGTAREEGWRVRVEGAGTW
Ga0066670_100371471	3300005560	Soil	MSLLDRVRALLGDDAVEVAATPDGVPRVAPASPDAVA
Ga0066670_102621142	3300005560	Soil	MSLVDRVRALLGEDAVDVAATRDGVPRVAPGSPDAVAL
Ga0066703_104826632	3300005568	Soil	MSLLDRVRALLGSDALLESAGPDGVPRVAPDSPDAVALLLGTAREEGWRVR
Ga0066705_100543903	3300005569	Soil	MSLVDRVRALLGEDAVDVAATRDGVPRVAPGSPDAVALLLGTA
Ga0066708_102614811	3300005576	Soil	MSVLDRVRALLGSDAVEASSGPDAVPRVAPPSPDAVA
Ga0066691_100502743	3300005586	Soil	MSLLDRVRALLGSDALLESAGPDGVPRVAPDSPDAVALLLGTAREE
Ga0066691_103205421	3300005586	Soil	MSLLDRVRALLGEEAVEVAATPDGVPRVAPASPDAVALLL
Ga0066651_103875572	3300006031	Soil	MSLVDRVRALLGDDAVDVAATPDGVPRVAPGSPDAVALLLG
Ga0066658_103548282	3300006794	Soil	MSLVDRVRALLGDDAVDVAATPDGVPRVAPGSPDAVALLFGTA
Ga0079220_100134474	3300006806	Agricultural Soil	MSLVDRVRALLGDDAVDVAAAHDGVPRVAPGSPDAVALLLGTARSEGWRVRIEGA
Ga0079220_106689911	3300006806	Agricultural Soil	MSLLDRVRALLGDDAVDVAATRNGVPRVAPASPDAVALLLGTARAD
Ga0075426_104038181	3300006903	Populus Rhizosphere	MSLVDRVRALLGDDAVDVAPTPDGVPRVAPASPDA
Ga0079218_120565031	3300007004	Agricultural Soil	MSLLDRVRALLGSDAVEVAAGPDAVPRVAPASPDAVAL
Ga0099791_105845671	3300007255	Vadose Zone Soil	MSLVDRVRALLGDDAVDVAATPDGVPRVAPGSPDAVALL
Ga0066710_1002061531	3300009012	Grasslands Soil	MTLVERVRALLGADAVELAGGPDAVPRVAPASPDAVALLLGTARQEGWRVRLEGAG
Ga0066710_1031808712	3300009012	Grasslands Soil	MGTPGGRMSLLDRVRALLGDDAVEIAGGADAVPRVAPASPDAVALLLGTAREEGWRVRLE
Ga0066710_1035994001	3300009012	Grasslands Soil	MSLVDRVRALLGEDAVDVAATRDGVPRVAPGSPDAVALLLGTAREEGWR
Ga0066710_1043644882	3300009012	Grasslands Soil	MSLVDRVRALLGEDAVDVAATRDGVPRVAPGSPDAVALLLGTAR
Ga0066710_1043806602	3300009012	Grasslands Soil	MSLLDRVRALLGDDAVEIAGGADAVPRVAPASPDAVALLLGTAREEGWRVRLEGAGTWLP
Ga0099827_102804651	3300009090	Vadose Zone Soil	MSILERVRALLGRDAVLESTAGPDQVPRVAPASPDAVVLLLGTAHEEGW
Ga0134088_102483652	3300010304	Grasslands Soil	MSLVDRVRALLGSDAVDLAATPDGVPRVAPASPDAVALLLGTARE
Ga0134109_100073071	3300010320	Grasslands Soil	MSLVDRVRALLGDDAVDVAATHDGVPRVAPASPDAVALLLGTAREEGWHVRIEG
Ga0134067_100743791	3300010321	Grasslands Soil	MSLLDRVRALLGDDAVEIAGGAGAVPRVAPASPDAVALLLGTA
Ga0134084_100122381	3300010322	Grasslands Soil	MSLLDRVRALLGDDAVEIAGGAGAVPRVAPASPDAVALLL
Ga0134080_101594942	3300010333	Grasslands Soil	MSLVDRVRALLGDDAVDVAATPDGVPRVAPGSPDAVGLLLGTARE
Ga0134063_104639392	3300010335	Grasslands Soil	MSLVDRVRALLGDDAVDVAATPDGVPRVAPGSPDAV
Ga0134062_107548902	3300010337	Grasslands Soil	MSLVDRVRALLGDDAVDVAATPDGVPRVAPGSPDAVGLLLGTAREEGWRVRVEGA
Ga0134066_103324761	3300010364	Grasslands Soil	MSLLDRVRALLGDDAVEVAATPDGVPRVAPASPDAV
Ga0137389_103770181	3300012096	Vadose Zone Soil	MSLVDRVRALLGDDAVDVAATPDGVPRVAPSSPDAVALLLGTAREEGWRV
Ga0137357_10971601	3300012168	Soil	MRIAERVRALLGGDAVLEDTGSPDGVPRIAPASPDAVALLLGTARAEGWRVRVEGA
Ga0137388_114634031	3300012189	Vadose Zone Soil	MSLLDRVRALLGSDALLESAGPDGVPRVAPDSPDAVALLLGTARE
Ga0137364_102896231	3300012198	Vadose Zone Soil	MSLVDRVRALLGDDAVDVAATPDGVPRVAPGSPDA
Ga0137364_109724501	3300012198	Vadose Zone Soil	MSLLDRVRALLGEEAVEVAATPDGVPRVAPASPDAVALLLGTARE
Ga0137364_114554761	3300012198	Vadose Zone Soil	MSLLDRVRALLGDDAVEIAGGAGAVPRVAPASPDAVALLLGTAREEGWRVRLE
Ga0137374_101439971	3300012204	Vadose Zone Soil	MSLVERVRALLGSDAVEVTGGPDAIPRVAPASPDAVALLLGTVR
Ga0137380_116626772	3300012206	Vadose Zone Soil	MSLVDRVRALLGDDAVDVAATPDGVPRVAPGSPDAVGLLLGTAREEGWRVRVEGAGTW
Ga0137376_100883441	3300012208	Vadose Zone Soil	MSLLDRVRALLGHDAVLEGPVAGEVPRVAPPTPDAVA
Ga0137376_115179861	3300012208	Vadose Zone Soil	MSLVDRVRALLGDDAVDVAATPDGVPRVAPGSPDAVGLLLGTAREEGWRVRVE
Ga0137376_117610701	3300012208	Vadose Zone Soil	MSLVDRVRALLGDDAVDVAATPDGVPRVAPGSPDAVGLLLGTAREEG
Ga0137378_112091041	3300012210	Vadose Zone Soil	MSLVDRVRALLGDDAVDVAATRDGVPRVAPGSPDA
Ga0137377_113687681	3300012211	Vadose Zone Soil	MKIVERVKALLGRDSVLEDMGPPDGLPRVAPASPDAVALLLGTARE
Ga0137465_10173123	3300012231	Soil	MRIAERVRALLGGDAVLEDTGSPDGVPRIAPASPDAVALLLGTARAEGWRVRVEGAG
Ga0137387_105143261	3300012349	Vadose Zone Soil	MSLVDRVRALLGGDAVDVAATRDGVPRVAPGSPDAVALLLGT
Ga0137368_101892992	3300012358	Vadose Zone Soil	MSLLDKVRALLGGDAVLEGPASGEVPRVAPPTPDAVALLLGTAHEEGWRVRVEG
Ga0137361_112054751	3300012362	Vadose Zone Soil	MSLLDRVRALLGDDAVEIAGGADAVPRVAPASPDAVALLLGTAREEGWR
Ga0137358_103480502	3300012582	Vadose Zone Soil	MSLVDRVRALLGDDAVDVAATPDGVPRVAPSSPDAVALLLGTAREEGWRVRVEGAGTWLP
Ga0137395_109977292	3300012917	Vadose Zone Soil	MKIVERVKALLGRESVLEDMGPPDGLPRVAPASPDAVALLLGTAREEGWRV
Ga0137396_103887801	3300012918	Vadose Zone Soil	MSLVDRVRALLGDDAVDVAATPDGVPRIAPGSPDAVAL
Ga0134077_100260471	3300012972	Grasslands Soil	VSLVDRVRALLGDDAVDVAATPDGVPRVAPGSPDAVAL
Ga0134077_101269442	3300012972	Grasslands Soil	MSLVDRVRALLGDDAVDVAATPDGVPRVAPGSPDAVGLLLG
Ga0134077_102642401	3300012972	Grasslands Soil	VSLLDRVRALLGDDAVDVPATHDGVPRVAPGSPDAVAL
Ga0134110_105948831	3300012975	Grasslands Soil	VSLVDRVRALLGDDAVDVAATHDGVPRVAPASPDAVALLLGTAREEGWHVRIEG
Ga0134076_102066621	3300012976	Grasslands Soil	VSLVDRVRALLGDDAVDVAATPDGVPRVAPGSPDAVALLLGTAREEG
Ga0134076_103663731	3300012976	Grasslands Soil	MSLLDRVRALLGDDAVDVATTPDGVPRVAPGSPDAVALLLGTAREEG
Ga0134081_102218221	3300014150	Grasslands Soil	MSLLDRVRALLGDDAVEIAGGPDAVPRVAPASPDAVALLLGTA
Ga0134075_102076912	3300014154	Grasslands Soil	MSVVDRVRALLGSDAVEVSSGPDAVPRVAPASPDAVALLLGTAREEGWR
Ga0180078_10904082	3300014865	Soil	MRIAERVRALLGGDAVLEDTGSPDGVPRIAPASPDAVALLLGTARAEGWRVRVE
Ga0137420_12593672	3300015054	Vadose Zone Soil	MSLVDRVRALLGDDAVDVAATPDGVPRVAPSSPDAVALLLGTAREEGWRVRVEGAGT
Ga0134072_101664201	3300015357	Grasslands Soil	MSLLDRVRALLGDDAVEIAGGADAVPRVAPASPDAVALL
Ga0134089_100716651	3300015358	Grasslands Soil	MSLLDRVRALLGDDAVEIAGGPDAVPRVAPPSPDAVALLLGTARQ
Ga0134069_12163501	3300017654	Grasslands Soil	MSLVDRVRALLGEDAVDVAATRDGVPRVAPGSPDAVALLLGTAREEGWRVRVEGAGTW
Ga0134112_103175061	3300017656	Grasslands Soil	MSLLDRVRALLGSDAVDLAATADGVPRVAPASPDAVALLLGTAREE
Ga0187776_103716021	3300017966	Tropical Peatland	MSLVERVRALLGNDAVLEDSGAPDGVPRVAPDSPDA
Ga0187774_100938521	3300018089	Tropical Peatland	MSLLERVRALLGEEAVLEASGAPDGVPRVAPDSPDAVALL
Ga0066655_105683082	3300018431	Grasslands Soil	MSLVDRVRALLGDDAVDVAATPDGVPRVAPGSPDAVALLLGTAREEGWRV
Ga0066655_110758361	3300018431	Grasslands Soil	VSLVDRVRALLGDDAVDVAATPDGVPRVAPGSPDAVALLLGTAREEGWRV
Ga0190268_105797801	3300018466	Soil	MAGRVSLLERVRSLLGAEAVDLSAERDGVPRVAPPTADAVALLMGTAHAEGWRVRVEGAGTW
Ga0066662_107586691	3300018468	Grasslands Soil	MSLVDRVRALLGDDAVDVATTPDGVPRVAPGSPDAVALLLGTAREEGWRVRVEGA
Ga0066662_126377721	3300018468	Grasslands Soil	MSLVDRVRALLGSDAVDLAATPDGVPRVAPASPDAVALLLGTAREAGWRLRVAGAGTWVPADAPAGRRRCSSRPRRRSRA
Ga0066662_128039992	3300018468	Grasslands Soil	MSLVDRVRALLGDDAVDVAATPDGVPRVAPGSPDAVGLLLGTA
Ga0193756_10008591	3300019866	Soil	MSLVDRVRALLGDDAVDVAATPDGVPRVAPGSPDAVALLLGTAR
Ga0193725_10437351	3300019883	Soil	MKITERVRALLGHDAVLEDTGAPDGVPRIAPASPDAVALLLGTARAEGWRVR
Ga0247695_10491371	3300024179	Soil	MSLLDRVRALLGDDAVDVAATRDGVPRVAPASPDAVALLLGTARAEGW
Ga0247680_10047311	3300024246	Soil	MSILARVRALLGADAVLPGPEGPPRIAPASPDGVALLLATAHEEGWHVRVEG
Ga0137417_14845313	3300024330	Vadose Zone Soil	MSLVDRVRALLGDDAVDVAATPDGVPRVAPSSPDAV
Ga0209342_107798361	3300025326	Soil	VSILERVRALLGSEAVVEGRVAPPTADAVALLLGTAHEEGWHVRVEGAGSWMPG
Ga0207653_100026951	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	MSLVDRVRALLGDDAVDVAATPDGVPRVAPGSPDAVALLLGTAREEG
Ga0207685_102721582	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MSLVDRVRALLGDDAVDVAATPDGVPRVAPGSPDAVALLLGTA
Ga0207665_100925931	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MSLLDRVRALLGDDAVDVAATRDGVPRVAPASPDAVALLLGTARAEGWRV
Ga0209234_10482762	3300026295	Grasslands Soil	MSLLDRVRALLGDEAVEVAATPDGVPRVAPASPDAVALLLGTAR
Ga0209237_10166751	3300026297	Grasslands Soil	MSLVDRVRALLGDDAVDVAATPDGVPRVAPSSPDAVALLLGTAREEGWRVR
Ga0209237_12682901	3300026297	Grasslands Soil	MSLLDRVRALLGDDAVEIAGGADAVPRVAPASPDAVALLLGT
Ga0209238_10078226	3300026301	Grasslands Soil	MSLVDRVRALLGDDAVDVAATPDGVPRVAPGAPDAVALLL
Ga0209238_12277441	3300026301	Grasslands Soil	MSLLDRVRALLGSDALLESAGPDGVPRVAPDSPDAVA
Ga0209468_11718741	3300026306	Soil	MSLVDRVRALLGDDAVDVAATPDGVPRVAPGSPDAVGLLLGT
Ga0209265_11872242	3300026308	Soil	MSLLDRVRALLGDDAVEVAATPDGVPRVAPASPDAVALLLGTAREEGWHVRIEGAGTWLP
Ga0209239_10309051	3300026310	Grasslands Soil	MSLLDRVRALLGDDAVEIAGGAGAVPRVAPASPDAVALLLGTAREEGWRVR
Ga0209268_11261811	3300026314	Soil	MSVVDRVRALLGSDAVEVSSGPDAVPRVAPASPDAVALLLGTARE
Ga0209155_12747612	3300026316	Soil	MSLVDRVRALLGDDAVDVAATPDGVPRVAPGSPDAVGLLLGTAREEGWRVRVEGAGTWL
Ga0209131_10693851	3300026320	Grasslands Soil	MSLVDRVRALLGDDAVDVAATPDGVPRVAPSSPDAVALL
Ga0209470_10806652	3300026324	Soil	MSLVDRVRALLGDDAVDVAATPDGVPRVAPGSPDAVALLLGTAREEGWRVR
Ga0209470_13132671	3300026324	Soil	MSLVDRVRALLGDDAVDVAATRDGVPRVAPGSPDAVALLLGTAREEGWR
Ga0209801_13162912	3300026326	Soil	MSLVDRVRALLGSDAVDLAATPDGVPRVAPASPDAVALLLG
Ga0209266_10098661	3300026327	Soil	MSLLDKVRALLGGDAVLEGPASGESPRVAPPTPDAVALLLGTAHEEGWRVRVEGT
Ga0209266_12919601	3300026327	Soil	MSVLDRVRALLGSDAVLEASSGPDAVPRVAPPSPDAV
Ga0209804_10278404	3300026335	Soil	MSLLDRVRALLGDDAVEIGGGADAVPRVAPASPDAVALLLGT
Ga0209808_11184361	3300026523	Soil	MSVLDRVRALLGSDAVEASSGPDAVPRVAPPSPDAVALL
Ga0209690_10709551	3300026524	Soil	MSLVDRVRALLGSDAVDLAATPDGVPRVAPASPDAVALLLGTAREEGWRLR
Ga0209160_10011681	3300026532	Soil	VSLLDRVRALLGSDALLESAGPDGVPRVAPDSPDAV
Ga0209160_10142491	3300026532	Soil	MSLLDRVRALLGDEAVEVAATPDGVPRVAPASPDA
Ga0209056_101987931	3300026538	Soil	MSVVDRVRALLGSDAVEVSSGPDAVPRVAPASPDAVALLLGTAREEGWRIRIEG
Ga0209376_13872182	3300026540	Soil	MSLVDRVRALLGDDAVDVATTPDGVPRVAPGSPDAVALLLG
Ga0209588_11384472	3300027671	Vadose Zone Soil	MSLLDKVRALLGRDAVLEGPASGEIPRVAPPTPDAVALLLGTAHEEGWRVRVEGT
Ga0209073_100463182	3300027765	Agricultural Soil	MSLVDRVRALLGDDAVDVAAAHDGVPRVAPGSPDAVALLL
Ga0209074_104532281	3300027787	Agricultural Soil	MSLVDRVRALLGDDAVDVAAAHDGVPRVAPGSPDAVAL
Ga0209590_101649922	3300027882	Vadose Zone Soil	MSILERVRALLGRDAVLESTAGPDQVPRVAPASPDAVVLLL
Ga0268264_103746431	3300028381	Switchgrass Rhizosphere	MKIAERVRALLGGDAVLEDTGAPDGVPRIAPASPDAVALLLGT
Ga0310686_1143674372	3300031708	Soil	MNVLERVRALLGPDAVLEDAGGADGVPRIAPASPDAVALLLRTAREESWRVRVEG
Ga0307473_104687592	3300031820	Hardwood Forest Soil	MSLVDRVRALLGDDAVDVAATPDGVPRVAPGSPDAVALLLGTAREE
Ga0307479_108585661	3300031962	Hardwood Forest Soil	MSLLDRVRALLGEEAVEVAATPDGVPRVAPASPDAVALLLGTAREEGWR
Ga0307471_1038946452	3300032180	Hardwood Forest Soil	MKIAERVRALLGRDAVLEDTGAPDGVPRVAPASPDAVALLLGTARAEGWRVRVEGA
Ga0335079_119307321	3300032783	Soil	VKISERVRALLGREAVLEDTGGPDGVPRVAPASPDAVAVLL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F060764

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences