Metagenome Family F060762

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F060762
Family Type	Metagenome
Number of Sequences	132
Average Sequence Length	52 residues
Representative Sequence	MIGLVLALVVVAIVVSLFGGWIFGIAIGAVAIILFVLFLAGFGRRAASPRQP
Number of Associated Samples	107
Number of Associated Scaffolds	132

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	51.54 %
% of genes near scaffold ends (potentially truncated)	27.27 %
% of genes from short scaffolds (< 2000 bps)	79.55 %
Associated GOLD sequencing projects	101
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (80.303 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (19.697 % of family members)
Environment Ontology (ENVO)	Unclassified (36.364 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (56.818 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 57.50% β-sheet: 0.00% Coil/Unstructured: 42.50%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.45
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.45
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 132 Family Scaffolds
PF00171	Aldedh	56.06
PF12773	DZR	15.91
PF00108	Thiolase_N	3.79
PF02737	3HCDH_N	1.52
PF13649	Methyltransf_25	1.52
PF00535	Glycos_transf_2	0.76
PF13240	zinc_ribbon_2	0.76
PF13416	SBP_bac_8	0.76
PF01883	FeS_assembly_P	0.76

COG ID	Name	Functional Category	% Frequency in 132 Family Scaffolds
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	56.06
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	56.06
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	56.06
COG0183	Acetyl-CoA acetyltransferase	Lipid transport and metabolism [I]	3.79
COG0240	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	1.52
COG0287	Prephenate dehydrogenase	Amino acid transport and metabolism [E]	1.52
COG0677	UDP-N-acetyl-D-mannosaminuronate dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	1.52
COG1004	UDP-glucose 6-dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	1.52
COG1250	3-hydroxyacyl-CoA dehydrogenase	Lipid transport and metabolism [I]	1.52
COG1748	Saccharopine dehydrogenase, NADP-dependent	Amino acid transport and metabolism [E]	1.52
COG2084	3-hydroxyisobutyrate dehydrogenase or related beta-hydroxyacid dehydrogenase	Lipid transport and metabolism [I]	1.52

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	80.30 %
Unclassified	root	N/A	19.70 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	80.30 %
Unclassified	root	N/A	19.70 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	80.30 %
Unclassified	root	N/A	19.70 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	56.82 %
Unclassified	root	N/A	19.70 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.76 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	55.30 %
Unclassified	root	N/A	19.70 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1.52 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.70 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	12.88 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	0.76 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.70 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	7.58 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.03 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	0.76 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.70 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	7.58 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.03 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	0.76 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.76 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000880\|AL20A1W_1011538	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	841	Open in IMG/M
3300000956\|JGI10216J12902_101844957	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	932	Open in IMG/M
3300004479\|Ga0062595_100392098	All Organisms → cellular organisms → Bacteria	990	Open in IMG/M
3300004479\|Ga0062595_100563566	All Organisms → cellular organisms → Bacteria	876	Open in IMG/M
3300005093\|Ga0062594_100122822	All Organisms → cellular organisms → Bacteria	1622	Open in IMG/M
3300005093\|Ga0062594_100954510	Not Available	818	Open in IMG/M
3300005163\|Ga0066823_10145983	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300005171\|Ga0066677_10758829	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	539	Open in IMG/M
3300005172\|Ga0066683_10320745	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	963	Open in IMG/M
3300005174\|Ga0066680_10254189	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1117	Open in IMG/M
3300005178\|Ga0066688_10069516	All Organisms → cellular organisms → Bacteria	2087	Open in IMG/M
3300005179\|Ga0066684_10076514	All Organisms → cellular organisms → Bacteria	1995	Open in IMG/M
3300005179\|Ga0066684_10632522	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	719	Open in IMG/M
3300005180\|Ga0066685_10393930	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	962	Open in IMG/M
3300005180\|Ga0066685_10514305	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	828	Open in IMG/M
3300005186\|Ga0066676_11131279	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	515	Open in IMG/M
3300005330\|Ga0070690_100752701	All Organisms → cellular organisms → Bacteria	752	Open in IMG/M
3300005332\|Ga0066388_100754665	All Organisms → cellular organisms → Bacteria	1572	Open in IMG/M
3300005338\|Ga0068868_102037043	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	545	Open in IMG/M
3300005445\|Ga0070708_100070005	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3156	Open in IMG/M
3300005446\|Ga0066686_11056396	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	524	Open in IMG/M
3300005540\|Ga0066697_10098472	All Organisms → cellular organisms → Bacteria	1702	Open in IMG/M
3300005545\|Ga0070695_101499735	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	561	Open in IMG/M
3300005553\|Ga0066695_10284912	All Organisms → cellular organisms → Bacteria	1043	Open in IMG/M
3300005556\|Ga0066707_10420885	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	868	Open in IMG/M
3300005559\|Ga0066700_10378573	All Organisms → cellular organisms → Bacteria	999	Open in IMG/M
3300005561\|Ga0066699_10151243	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1584	Open in IMG/M
3300005568\|Ga0066703_10544953	All Organisms → cellular organisms → Bacteria	683	Open in IMG/M
3300005713\|Ga0066905_100135530	All Organisms → cellular organisms → Bacteria	1747	Open in IMG/M
3300005764\|Ga0066903_101262788	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	1377	Open in IMG/M
3300006046\|Ga0066652_100070451	All Organisms → cellular organisms → Bacteria	2721	Open in IMG/M
3300006794\|Ga0066658_10439895	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	710	Open in IMG/M
3300006796\|Ga0066665_10987889	All Organisms → cellular organisms → Bacteria	647	Open in IMG/M
3300006797\|Ga0066659_10212372	Not Available	1424	Open in IMG/M
3300006845\|Ga0075421_102276199	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	570	Open in IMG/M
3300006847\|Ga0075431_100096927	All Organisms → cellular organisms → Bacteria	3045	Open in IMG/M
3300006881\|Ga0068865_100369921	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1166	Open in IMG/M
3300007255\|Ga0099791_10306223	Not Available	758	Open in IMG/M
3300009012\|Ga0066710_100158293	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3162	Open in IMG/M
3300009012\|Ga0066710_100568939	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1716	Open in IMG/M
3300009012\|Ga0066710_101022007	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1276	Open in IMG/M
3300009012\|Ga0066710_101602553	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	997	Open in IMG/M
3300009012\|Ga0066710_101643035	Not Available	982	Open in IMG/M
3300009038\|Ga0099829_11602809	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	537	Open in IMG/M
3300009090\|Ga0099827_10000153	All Organisms → cellular organisms → Bacteria	25967	Open in IMG/M
3300009090\|Ga0099827_10434963	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1124	Open in IMG/M
3300009137\|Ga0066709_100601338	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1566	Open in IMG/M
3300009137\|Ga0066709_101548746	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	953	Open in IMG/M
3300009137\|Ga0066709_104475382	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	510	Open in IMG/M
3300009147\|Ga0114129_12993603	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	556	Open in IMG/M
3300009176\|Ga0105242_10868860	All Organisms → cellular organisms → Bacteria	899	Open in IMG/M
3300009177\|Ga0105248_10706377	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1138	Open in IMG/M
3300009789\|Ga0126307_11632756	Not Available	524	Open in IMG/M
3300009807\|Ga0105061_1047655	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	648	Open in IMG/M
3300009817\|Ga0105062_1049480	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	768	Open in IMG/M
3300010039\|Ga0126309_10379308	Not Available	840	Open in IMG/M
3300010326\|Ga0134065_10268371	Not Available	642	Open in IMG/M
3300010326\|Ga0134065_10416962	Not Available	542	Open in IMG/M
3300010326\|Ga0134065_10472000	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	517	Open in IMG/M
3300010333\|Ga0134080_10022426	All Organisms → cellular organisms → Bacteria	2352	Open in IMG/M
3300010333\|Ga0134080_10229581	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	813	Open in IMG/M
3300010333\|Ga0134080_10438946	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	610	Open in IMG/M
3300010396\|Ga0134126_10345635	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1736	Open in IMG/M
3300012198\|Ga0137364_10624389	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	812	Open in IMG/M
3300012198\|Ga0137364_11069098	Not Available	608	Open in IMG/M
3300012199\|Ga0137383_11134839	Not Available	564	Open in IMG/M
3300012199\|Ga0137383_11181928	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	551	Open in IMG/M
3300012200\|Ga0137382_10078184	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2138	Open in IMG/M
3300012204\|Ga0137374_10027577	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6285	Open in IMG/M
3300012204\|Ga0137374_10887583	Not Available	656	Open in IMG/M
3300012206\|Ga0137380_10024392	All Organisms → cellular organisms → Bacteria	5568	Open in IMG/M
3300012207\|Ga0137381_10067850	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2978	Open in IMG/M
3300012207\|Ga0137381_10323257	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1344	Open in IMG/M
3300012208\|Ga0137376_10487788	All Organisms → cellular organisms → Bacteria	1069	Open in IMG/M
3300012349\|Ga0137387_11095252	Not Available	568	Open in IMG/M
3300012351\|Ga0137386_10544057	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	836	Open in IMG/M
3300012355\|Ga0137369_10296567	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1201	Open in IMG/M
3300012359\|Ga0137385_10818583	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	773	Open in IMG/M
3300012918\|Ga0137396_11006672	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	603	Open in IMG/M
3300012922\|Ga0137394_10181372	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1796	Open in IMG/M
3300012929\|Ga0137404_12304577	Not Available	504	Open in IMG/M
3300012930\|Ga0137407_10309979	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1445	Open in IMG/M
3300012955\|Ga0164298_10836802	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	662	Open in IMG/M
3300012977\|Ga0134087_10188243	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	918	Open in IMG/M
3300012987\|Ga0164307_10338202	Not Available	1088	Open in IMG/M
3300014150\|Ga0134081_10300747	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	576	Open in IMG/M
3300014157\|Ga0134078_10462583	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	582	Open in IMG/M
3300015371\|Ga0132258_10001660	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	39698	Open in IMG/M
3300017997\|Ga0184610_1009959	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2367	Open in IMG/M
3300018052\|Ga0184638_1000949	All Organisms → cellular organisms → Bacteria	8544	Open in IMG/M
3300018054\|Ga0184621_10001285	All Organisms → cellular organisms → Bacteria	6183	Open in IMG/M
3300018066\|Ga0184617_1159188	Not Available	665	Open in IMG/M
3300018076\|Ga0184609_10022255	All Organisms → cellular organisms → Bacteria	2524	Open in IMG/M
3300018081\|Ga0184625_10248239	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	932	Open in IMG/M
3300018433\|Ga0066667_10008671	All Organisms → cellular organisms → Bacteria	4741	Open in IMG/M
3300018433\|Ga0066667_12245692	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	509	Open in IMG/M
3300018468\|Ga0066662_10198550	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1583	Open in IMG/M
3300018468\|Ga0066662_12373154	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	558	Open in IMG/M
3300018482\|Ga0066669_10257220	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1385	Open in IMG/M
3300020000\|Ga0193692_1024661	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1426	Open in IMG/M
3300020005\|Ga0193697_1005626	All Organisms → cellular organisms → Bacteria	3069	Open in IMG/M
3300020022\|Ga0193733_1013876	All Organisms → cellular organisms → Bacteria	2266	Open in IMG/M
3300022756\|Ga0222622_10050848	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2340	Open in IMG/M
3300025938\|Ga0207704_10538852	Not Available	947	Open in IMG/M
3300026023\|Ga0207677_11743462	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	578	Open in IMG/M
3300026326\|Ga0209801_1130669	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1072	Open in IMG/M
3300026532\|Ga0209160_1149697	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1073	Open in IMG/M
3300026542\|Ga0209805_1232101	Not Available	754	Open in IMG/M
3300027379\|Ga0209842_1032420	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	982	Open in IMG/M
3300027738\|Ga0208989_10288533	Not Available	527	Open in IMG/M
3300027765\|Ga0209073_10176538	Not Available	802	Open in IMG/M
3300027875\|Ga0209283_10238562	All Organisms → cellular organisms → Bacteria	1206	Open in IMG/M
3300027882\|Ga0209590_10023281	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3164	Open in IMG/M
3300027909\|Ga0209382_10931713	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	912	Open in IMG/M
3300028536\|Ga0137415_10122228	All Organisms → cellular organisms → Bacteria	2449	Open in IMG/M
3300028707\|Ga0307291_1180011	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	543	Open in IMG/M
3300028716\|Ga0307311_10144792	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	682	Open in IMG/M
3300028716\|Ga0307311_10190513	Not Available	599	Open in IMG/M
3300028720\|Ga0307317_10008565	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3038	Open in IMG/M
3300028720\|Ga0307317_10322197	Not Available	522	Open in IMG/M
3300028721\|Ga0307315_10217115	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	595	Open in IMG/M
3300028784\|Ga0307282_10154272	Not Available	1088	Open in IMG/M
3300028802\|Ga0307503_10017158	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2299	Open in IMG/M
3300028884\|Ga0307308_10236610	Not Available	875	Open in IMG/M
3300028884\|Ga0307308_10608406	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	524	Open in IMG/M
3300028885\|Ga0307304_10444320	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	590	Open in IMG/M
3300031184\|Ga0307499_10117428	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	747	Open in IMG/M
3300031226\|Ga0307497_10043177	All Organisms → cellular organisms → Bacteria	1544	Open in IMG/M
3300031720\|Ga0307469_10008025	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	4951	Open in IMG/M
3300031820\|Ga0307473_10602332	Not Available	759	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.67%
Host-Associated	Host-Associated	8.33%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	86.36%
Plants	Host-Associated → Plants	8.33%
Aquatic	Environmental → Aquatic	5.30%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	86.36%
Sediment	Environmental → Aquatic → Sediment	5.30%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.55%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	78.03%
Loam	Environmental → Terrestrial → Soil → Loam	6.06%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.30%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.55%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.03%
Sand	Environmental → Terrestrial → Soil → Sand	2.27%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.76%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	43.18%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	28.79%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.30%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.55%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.79%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.03%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.03%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.27%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	2.27%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.52%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.76%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.76%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.76%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	19.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	17.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	13.64%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	11.36%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	6.82%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.03%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.03%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.03%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.27%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	2.27%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.52%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.52%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.52%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.76%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.76%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.76%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.76%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.76%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.76%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.76%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.76%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.76%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.76%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000880	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A35-65cm-20A)- 1 week illumina	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005163	Soil and rhizosphere microbial communities from Laval, Canada - mgHMB	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009807	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_0_10	Environmental	Open in IMG/M
3300009817	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300014150	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020000	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3a1	Environmental	Open in IMG/M
3300020005	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m2	Environmental	Open in IMG/M
3300020022	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s2	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)	Environmental	Open in IMG/M
3300026532	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)	Environmental	Open in IMG/M
3300026542	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes)	Environmental	Open in IMG/M
3300027379	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20 (SPAdes)	Environmental	Open in IMG/M
3300027738	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028707	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_148	Environmental	Open in IMG/M
3300028716	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198	Environmental	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028721	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_355	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AL20A1W_10115382	3300000880	Permafrost	VIGLVLALAVVAIIVSLVGHWIVGIAIGALGLILFVLFLRGFGRRATSPRRP*
JGI10216J12902_1018449572	3300000956	Soil	VLGLVLALAVVAIIVSLVGQWIAGVAIGAVALILFVLFLTGFGRRVASARRP*
Ga0062595_1003920982	3300004479	Soil	MIGLVLALAVIAIVVTLFGGWIFGIALGAVALILFVLFLAGFGRRAVSPRQP*
Ga0062595_1005635662	3300004479	Soil	MIGLVLALAVIAIVISLFGGWIFGIALGAVAVILFVLFLAGFGRRAASPRQP
Ga0062594_1001228223	3300005093	Soil	MLGLVLALAVVAIVVSLFGGWPFGIAIGAVAIILFVLFLTGFGRRAASPRRP*
Ga0062594_1009545102	3300005093	Soil	MIGLLLALVVVAIVVSLFGGWIFGIAIAAVALILFVLFLAGFGRRAAAPRQP*
Ga0066823_101459831	3300005163	Soil	MVGLLLALVVVAIVVSLFGGWMFGIAIGAVAVILFIVFVAGFGRRA
Ga0066677_107588292	3300005171	Soil	GLMIGLVLALAVVAIVVSLFGGWVFGIPIAAVAIILFVLFVAGFGRRAASPRQP*
Ga0066683_103207452	3300005172	Soil	MIGLVLALAVVAIVVALFGGWIFGIAIGAVAIVLLVLFLAGFGRRAASPRQP*
Ga0066680_102541892	3300005174	Soil	MIGLVLALAIIAIVVSLFGGWIFGIALGAVAVVLFVLFLMGFGRRAASPRQR*
Ga0066688_100695163	3300005178	Soil	MIGLVLALAVVAIVVSLFGGWIFGIPIAAVAIILFVLFVAGFGRRAASPRQP*
Ga0066684_100765142	3300005179	Soil	MIGLVLAFAVAAIVVALLGGWIFSIVIGIAAIVLFVLFIAGWGRRAATRGPDAPA*
Ga0066684_106325222	3300005179	Soil	MIGLILALVVAAIVLSLFGGWIFGIPIAAVAVILFVLFLMGFGRRAAEGKP*
Ga0066685_103939302	3300005180	Soil	MIGLVLALAIVAIVVALFGGWIFGIALGAVAIILLVLFLAGFGRRAASPRQP*
Ga0066685_105143052	3300005180	Soil	MIGLALALAFIAIVVTLFGGWIFGIALGAVGLILFVLFLALFGRRAASPRQP*
Ga0066676_111312792	3300005186	Soil	VVGLALALAVVAIIVSLVGQWIGGIAVGAVAIILLVLHLAGFGRRAASHRRP*
Ga0070690_1007527012	3300005330	Switchgrass Rhizosphere	DRRAPRRRRPALMLGLVLALAVVAIVVSLFGGWPFGIAIGAVAIILFVLFLTGFGRRAASPRRP*
Ga0066388_1007546653	3300005332	Tropical Forest Soil	MIGLVLALVVVALVVTLLGGWIFAIPIAIVALSLFALFVAGWGRRTVRTPDAQA*
Ga0068868_1020370432	3300005338	Miscanthus Rhizosphere	LMLGLVLALAVVAIVVSLFGGWPFGIAIGAVAIILFVLFLTGFGRRAASPRRP*
Ga0070708_1000700053	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VIGLVLALAVVAIVVSLLGGWIFGIGIGVAAIVLFVLFVAGWGRRAATRTPDTPG*
Ga0066686_110563961	3300005446	Soil	MIGLVLALAVVAIVITLFGGWIFGIALGAVAIILFVLFLAGFGRRAASPRQP*
Ga0066697_100984724	3300005540	Soil	HGNPCLMIGLVLALAVVAIVVALFGGWIFGIAIGAVAIVLLVLFLAGFGRRAASPRQP*
Ga0070695_1014997352	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MIGLVLALAVIAIVISLFGGWIFGIALGAVAIILFVLFLAGFGRRAAAPRRP*
Ga0066695_102849122	3300005553	Soil	MIGLVLALAVIAIVVTLFGGWIFGIALGAVALILLVLFLAGFGRRAASPRQP*
Ga0066707_104208852	3300005556	Soil	MIGLLLALVVVGIVVALLGGWIFGMVIGVAAVVLFVLFLAGWGRRAATRPPDAPE*
Ga0066700_103785732	3300005559	Soil	MIGIVLALAVAAIVVSLVGGWIFGIAIGCVSLILLVCFLAGFPRRGAANEARKP*
Ga0066699_101512432	3300005561	Soil	MIGLVLALVVVALVVTLLGLPWVGIPVGAVGIILFVLFLAGWGRRAATRQP*
Ga0066703_105449531	3300005568	Soil	MIGLVLALAVVAIVVSLFGGWIFGIPIAAVAIILFVLFLAGFGRRAASPRQ
Ga0066905_1001355302	3300005713	Tropical Forest Soil	MIGLVLALMVVAIVVALLGGWIFAIPIGIVALILFVHFVAGWTRRAAARTPDAPV*
Ga0066903_1012627882	3300005764	Tropical Forest Soil	MIGLILALLVAAIVLVLFGGWIFGVPIAIVGIILFGLFMVGFGRRAVEGKP*
Ga0066652_1000704513	3300006046	Soil	MIGAILALIVAAIVLTLFGGWIFGIPIAVVAIVLFVLFLLGFGRRAATGKP*
Ga0066658_104398952	3300006794	Soil	MIGLVLAFAVAAIVAALLGGCIFSIVIGIAAIVLFVLFIAGWGRRAATRGPDAPA*
Ga0066665_109878892	3300006796	Soil	MIGLALALVVVAIVVSLLGGWIFGIAIGAVALILFVVFMLGFG
Ga0066659_102123722	3300006797	Soil	MIGLVLALAVVAIVVSLFGGWIFGIPIAAVAIILFVLFVAGFGRRAVSPRQP*
Ga0075421_1022761992	3300006845	Populus Rhizosphere	GLALALLVVAVVISLFGGWIFGLALGAVAVILFVLFLVGFGRRTATREP*
Ga0075431_1000969272	3300006847	Populus Rhizosphere	MIGLALALLVVAVVISLFGGWIFGLALGAVAVILFVLFLVGFGRRTATREP*
Ga0068865_1003699212	3300006881	Miscanthus Rhizosphere	MLGLVLALAVVAIVVSLFGGWPFGIAIGAVAIILFVLFLTGFGRRA
Ga0099791_103062231	3300007255	Vadose Zone Soil	MIGLVLALAVVAIVVSLFGGWIFGIPIAALAIILFVLFVAGFGRRAASPGRP*
Ga0066710_1001582932	3300009012	Grasslands Soil	MIGILLALVVVAIVVSLLGGWIFGIGIGGAALVLLVLFLAGFGRRAATREARGP
Ga0066710_1005689392	3300009012	Grasslands Soil	MIGLVLALTVVAIVVSLFGGWIFGIAIGTVAIILFVLFVAGFGRRAASSRRP
Ga0066710_1010220072	3300009012	Grasslands Soil	MIGLALALAFIAIVVTLFGGWIFGIALGAVGLILFVLFLALFGRRAASPRQP
Ga0066710_1016025533	3300009012	Grasslands Soil	VLGLVLALAVVAIIVSLVGQWIAGIALGAVAIILFVLHLAGFGRRAASPRRP
Ga0066710_1016430352	3300009012	Grasslands Soil	MIGLLLALVLAAIVVALLGGWIFGIVIGVAAIVLFVLFLAGWGRRAATRPPDAPG
Ga0099829_116028092	3300009038	Vadose Zone Soil	VIGLVLALAVIATAVSLVGHWVVGIAIGAVALILFVLFLAGVGRRAASPRRR*
Ga0099827_1000015321	3300009090	Vadose Zone Soil	VVGLVLALIVGAIVVSLFGHWIFGIAIAAVAIILFVLFVAGLGRRLLTRRP*
Ga0099827_104349632	3300009090	Vadose Zone Soil	MIGLVLALAVVAIVVSLFGGWIFGIPIAAVAIILFVLFLAGFGRRAASPRQP*
Ga0066709_1006013382	3300009137	Grasslands Soil	MIGLLLALVVAAIVVALLGGWIFGIVIGVAAIVLFVLFLAGWGRRAATRPPDAPE*
Ga0066709_1015487461	3300009137	Grasslands Soil	MIGLLLALVVAAIAVALLGGWIFGIVIGVAAIVLFVLFLAGWGRRAATRPPDAPG*
Ga0066709_1044753822	3300009137	Grasslands Soil	ADGNGWRMIGLVLALTVVAIVVSLFGGWIFGIAIGTVAIILFVLFVAGFGRRAASSRRP*
Ga0114129_129936031	3300009147	Populus Rhizosphere	SRVIGVLLALVVIAIVVSLFGGWIFGIAIGAVAVILFAFFLAGFGRRSGSPRQP*
Ga0105242_108688601	3300009176	Miscanthus Rhizosphere	MLGLVLALAVVAIVVSLFGGWPFGIAIGAVAIILFVLFLTGFGRRAA
Ga0105248_107063773	3300009177	Switchgrass Rhizosphere	VLALAVVAIVVSLFGGWPFGIAIGAVAIILFVLFLTGFGRRAASPRRP*
Ga0126307_116327562	3300009789	Serpentine Soil	MIGLVLALIVVGVVVSLFGGWIFGIAIGAVAAILLVLFLLGFGRRAAAREP*
Ga0105061_10476551	3300009807	Groundwater Sand	VSWTSRRPSLVVVALVVSLLGGWIFGAAIAVAAIILCVVFITGFGRRAAAREP*
Ga0105062_10494802	3300009817	Groundwater Sand	VIGLVLGLIVAAIVVSLLGGWIFGIAIGAVAIILFVYFVVGFGRRPAARRP*
Ga0126309_103793082	3300010039	Serpentine Soil	MIGLVLAIVVAAIVVSLLGGWIFGVALGAVAIILFILFLVGFGRRAATREP*
Ga0134065_102683711	3300010326	Grasslands Soil	MIGLVLALAVIAIVVTLFGGWIFGIALGAVGLILFVLFLALFGRRAASPRQP*
Ga0134065_104169621	3300010326	Grasslands Soil	MIGLILAIVVAAIVLTLFGGWIFGIPLAVVAIILFVLFLFGFGRRAAEGKP*
Ga0134065_104720002	3300010326	Grasslands Soil	FRSAVHGNLCLMIGLVLALTVVAIVVARLGGWIFGIAIGAVAIVLLVLFLAGFGRRAASPRQP*
Ga0134080_100224261	3300010333	Grasslands Soil	PCLMIGLVLALAIVAIVVALFGGWIFGIALGAVAIILLVLFLAGFGRRAASPRQP*
Ga0134080_102295812	3300010333	Grasslands Soil	LAFIAIVVTLFGGWIFGIALGAVGLILFVLFLAGFGRRAASPRQP*
Ga0134080_104389462	3300010333	Grasslands Soil	MIGLVLALAVVSIVVALFGGWIFGIAIGAVAIVLLVLFLAGFGRRAASPRQP*
Ga0134126_103456352	3300010396	Terrestrial Soil	MVGLLLALVVIAIVVSLFGGWIFGIAIGAVAVLLFIVFVAGFGRRAASP*
Ga0137364_106243892	3300012198	Vadose Zone Soil	CDRNRGFMIGLVLALAVVAIVVSLFGGWIFGIPIAAVAIILFVLFVAGFGRRAASPRQP*
Ga0137364_110690981	3300012198	Vadose Zone Soil	MIGLVLALAVVAIVVSLFGGWVFGIPIAAVAIILFVLFVAGFGRRAASPRQP*
Ga0137383_111348392	3300012199	Vadose Zone Soil	VVGLVLALAVAAIIVSLVGHWIAGIAIGAVAIILFVLYLAGFGRRAASPRRP*
Ga0137383_111819281	3300012199	Vadose Zone Soil	MIGLVLALAVVAIVVSLFGGWIFGIAIGAVAIILFVLFLTGFGRRAASPRQP*
Ga0137382_100781843	3300012200	Vadose Zone Soil	VVGLVLALAVAAIIVSLVGHWIAGIAIGAVAIILFILHLAGFGRRAASPRRP*
Ga0137374_100275774	3300012204	Vadose Zone Soil	MIGLVLALAVVAIVISLVGGWIFGLAIGVAAVILFVVFGRRTAAREP*
Ga0137374_108875831	3300012204	Vadose Zone Soil	MIGLVLALAVAAIVVALLGGWIFGLALGAAAIVLFALFLVGFGRRTATRGP*
Ga0137380_100243925	3300012206	Vadose Zone Soil	VIGLGLALAVVAIVVSLVGRWIVGIAIGAAALILFALFLTGFGRRAASRRP*
Ga0137381_100678502	3300012207	Vadose Zone Soil	VIGLGLALAVVAIVVSLVGRWIVGIAIGAAALILFALFRTGFGRRAASRQP*
Ga0137381_103232571	3300012207	Vadose Zone Soil	MIGLVLALTVVAIVVSLFGGWIFGIAIGTVAIILFVLFVAGFGRRAASSRRP*
Ga0137376_104877882	3300012208	Vadose Zone Soil	MIGLVLALAIVATVVALFGGWIFGIALGAVAIILLVLFLAGFGRRAASPRQP*
Ga0137387_110952521	3300012349	Vadose Zone Soil	MIELVLALAVLAIVVSLFGGWVFGIAIGAVAMILFVLFLAGFGRRAASPRPP*
Ga0137386_105440572	3300012351	Vadose Zone Soil	VIGLVLALAVVAIVVSLVGRWIVGIAIGAAALILFALFLTGFGRRAASRRP*
Ga0137369_102965672	3300012355	Vadose Zone Soil	MIGLVLALAVAAIVVALLGGWIFGLALGAVAIVLFALFLVGFGRRTATRGP*
Ga0137385_108185832	3300012359	Vadose Zone Soil	IVAIVVALFGGWIFGIALGAVAIILLVLFLAGFGRRAASPRQP*
Ga0137396_110066722	3300012918	Vadose Zone Soil	MIGVVLALAVVAIVVSLFGGWIFGIAIATVAIILFVLFLAGFGRRAVSPRQP*
Ga0137394_101813723	3300012922	Vadose Zone Soil	MIGLVLALAVVAIVVSLFGGWIFGIPIAALAIILFVLFVAGFGRRAASPRQP*
Ga0137404_123045772	3300012929	Vadose Zone Soil	VLGLVLALAVVAIIVSLVGQWIPGIAIGVIALILFVLFLTGFGRRAASSRRP*
Ga0137407_103099793	3300012930	Vadose Zone Soil	LGLAVVAIIVSLVGHWIAGIAIGAVAIILFVLHLAGFGRRATSPRRP*
Ga0164298_108368022	3300012955	Soil	VIGVVLALAVLAIVVSLVGHWLAGIAIGAVALILFVLFLTGVGRRADVPRRP*
Ga0134087_101882432	3300012977	Grasslands Soil	MIGLLLALVLAAIVVALLGGWIFGIVIGVAAIVLFVLFLAGWGRRATTRPPDAPA*
Ga0164307_103382021	3300012987	Soil	MLGLVLALAVVAIVVSLFGGWPFGIAIGVVAIILFVLFLTGFGKRATWPRRP*
Ga0134081_103007472	3300014150	Grasslands Soil	AVVAIVVALLGGWIFGIAIGAVAIVLLVLFLAGFGRRAASPRQP*
Ga0134078_104625831	3300014157	Grasslands Soil	NLQRMIGLVLALAVIAIVVTLLGGWIFGIALGAVALILFLLFLAGFGRRAASPRQP*
Ga0132258_1000166030	3300015371	Arabidopsis Rhizosphere	MIGLVLALIVVAIVVALLGGWIFAIPIGIVALILFGLFLAGWGRRATSRTPNTPA*
Ga0184610_10099593	3300017997	Groundwater Sediment	VIGLMLGLVVVAIVVSLVGQWIAGIAIGTVAIILLALFLAGFGRRAASPRQP
Ga0184638_100094910	3300018052	Groundwater Sediment	VIGLVLGLIVAAIVVSLLGGWIFGIPIGAVAIILFVYFVVGFGRRPAARRP
Ga0184621_100012852	3300018054	Groundwater Sediment	VIGLMLGLVVVAIVVSLVGQWIAGIAIGAVAIILLALFLAGFGRRAASPRQP
Ga0184617_11591882	3300018066	Groundwater Sediment	MIGLVLALVVVAIVVSLFGGWIFGIAIGAVAIILFVFFLAGFGRRATSQRQ
Ga0184609_100222552	3300018076	Groundwater Sediment	MVGLLLALVVIAIVVSLFGGWIFGIAIGAVAIILFILFVAGFGRRAASP
Ga0184625_102482392	3300018081	Groundwater Sediment	MVGLLLALVVVAIVVSLFGGWIFGIAIGAVAIILFILFVAGFGRRAASP
Ga0066655_104243341	3300018431	Grasslands Soil	MIGLILAIVVAAIVLTLFGGWIFGIPLALVGIALFVLFLFGFGRRAAEGKP
Ga0066667_100086712	3300018433	Grasslands Soil	MIGLVLALAIVAIVVALFGGWIFGIALGAVAIILLVLFLAGFGRRAASPRQP
Ga0066667_122456922	3300018433	Grasslands Soil	MIGLVLALAVVAIVVSLFGGWIFGIPIAAVAIILFVLFVAGFGRRAASPRQP
Ga0066662_101985502	3300018468	Grasslands Soil	MIGLVLAFAVAAIVVALLGGWIFSIVIGIAAIVLFVLFIAGWGRRAATRGPDAPA
Ga0066662_123731541	3300018468	Grasslands Soil	SFAAASTGPFCLMIGLVLALAIIAIVVSLFGGWIFGIALGAVAVVLFVLFLMGFGRRAASPRQR
Ga0066669_102572202	3300018482	Grasslands Soil	MIGAILALIVAAIVLTLFGGWIFGIPIAVVAIVLFVLFLLGFGRRAATGKP
Ga0066669_117345441	3300018482	Grasslands Soil	ILAIVVAAIVLTLFGGWIFGIPLALVGIALFVLFLFGFGRRAAEGKP
Ga0193692_10246611	3300020000	Soil	MVGLLLALVVIAIVVSLFGGWIFGIAIGAVAIILFIVFVAGFGRRAASP
Ga0193697_10056266	3300020005	Soil	AMVGLLLALVVIAIVVSLFGGWIFGIAIGAVAAILFIVFVAGFGRRAASP
Ga0193733_10138763	3300020022	Soil	VVGLALALAVVAIIVSLVGHWIAGIAIGAVAIILFVLHLAGFGRRTASARRP
Ga0222622_100508484	3300022756	Groundwater Sediment	MVGLLLALVVIAIVVSLFGGWIFGIAIGAVAVILFLVFVAGFGRRAASP
Ga0207704_105388521	3300025938	Miscanthus Rhizosphere	MLGLVLALAVVAIVVSLFGGWPFGIAIGAVAIILFVLFLTGFGRRAASP
Ga0207677_117434621	3300026023	Miscanthus Rhizosphere	ARRRRPALMLGLVLALAVVAIVVSLFGGWPFGIAIGAVAIILFVLFLTGFGRRAASPRRP
Ga0209801_11306692	3300026326	Soil	MIGLVLALAIIAIVVSLFGGWIFGIALGAVAVVLFVLFLMGFGRRAASPRQR
Ga0209160_11496971	3300026532	Soil	LAIIAIVVSLFGGWIFGIALGAVAVVLFVLFLMGFGRRAASPRQR
Ga0209805_12321012	3300026542	Soil	MIGLVLALVVVALVVTLLGLPWVGIPVGAVGIILFVLFLAGWGRRAATRQP
Ga0209842_10324202	3300027379	Groundwater Sand	VIGLVLGLIVAAIVVSLLGGWIFGIAIGAVAIILFVYFVVGFGRRPAARRP
Ga0208989_102885332	3300027738	Forest Soil	MIGLLLALAVVAIVVSLFGGWIFGIVIGAVAIVLFVLFLAGFGRRAASTRQP
Ga0209073_101765382	3300027765	Agricultural Soil	MIGLVLALIVVAIVISLFGGWIFAIPIGLAALVLFVLFLAGWGR
Ga0209283_102385622	3300027875	Vadose Zone Soil	VIGLVLALAVIATAVSLVGHWVVGIAIGAVALILFVLFLAGVGRRAASPRRR
Ga0209590_100232812	3300027882	Vadose Zone Soil	VVGLVLALIVGAIVVSLFGHWIFGIAIAAVAIILFVLFVAGLGRRLLTRRP
Ga0209382_109317131	3300027909	Populus Rhizosphere	GLALALLVVAVVISLFGGWIFGLALGAVAVILFVLFLVGFGRRTATREP
Ga0137415_101222282	3300028536	Vadose Zone Soil	MIGLVLALAVVAIVVSLFGGWVFGIPIAAVAIILFVLFVAGFGRRAASPRQP
Ga0307291_11800111	3300028707	Soil	VVGLILALAVVAIVVSLFGGWIFGIAIGAVAIILFVLFLAGFGRRAASPRRP
Ga0307311_101447922	3300028716	Soil	VVAIIVSLVGQWIAGIAIGAVAIILFFLQLAGFGRRAASPRRP
Ga0307311_101905131	3300028716	Soil	VVGLVLALAVVAIVVSLFGGWIFGIAIGAVAIILFVLFLAGFGRRAASPRRP
Ga0307317_100085653	3300028720	Soil	VTGLVLALAVFAIIVSLVGHWIVGIAIGLVALILFVLALAGFGRRSTSPRRP
Ga0307317_103221972	3300028720	Soil	VVGLVLALAVVAILVSLFGGWIFGIAIGAVAIILFVLFLAGFGRRAASPRQP
Ga0307315_102171151	3300028721	Soil	LVLALAVVAIIVSLVGQWIAGIAIGAVAIILFFLQLAGFGRRAASPRRP
Ga0307282_101542722	3300028784	Soil	MVGLLLALVVVAIVVSLFGGWIFGIVISAVAIILFVGFLAGFGRRAATPRRP
Ga0307503_100171582	3300028802	Soil	MLGLVLALAVVAIVVSLLGGWLFGIAIGAVAIILFVLFLTGFGRRAASPRRP
Ga0307308_102366101	3300028884	Soil	MVGLLLALVVIAIVVSLFGGWIFGIAIGAVAVILFLVFVAGFGRRAAS
Ga0307308_106084062	3300028884	Soil	MIGLVLALVVVAIVVSLFGGWIFGIAIGAVAIILFVLFLAGFGRRAASPRQP
Ga0307304_104443202	3300028885	Soil	ALAVVAIVVSLFGGWIFGIAIGAVAIILFVLFLAGYGRRAASPRQP
Ga0307499_101174282	3300031184	Soil	MVGLLLALVVIAIVVSLFGGWIFGLAIGAVAVILFIVFVAGFGRRAASS
Ga0307497_100431772	3300031226	Soil	MLGVVLALAVVAIVVSLLGGWLFGIAIGAVAIILFVLFLTGFGRRAASPRRP
Ga0307469_100080253	3300031720	Hardwood Forest Soil	MVGLLLALVVIAIVVSLFGGWIFGIAIGAVAVLLFIVFVAGFGRRAASP
Ga0307473_106023322	3300031820	Hardwood Forest Soil	MVGLFLALVVVAIVVSLFGGWIFGIAIGAVAVILFIVFVAGFGRRAASP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F060762

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences