NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F060693

Metagenome / Metatranscriptome Family F060693

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F060693
Family Type Metagenome / Metatranscriptome
Number of Sequences 132
Average Sequence Length 61 residues
Representative Sequence MPEFGWGLDEPGPQTESSIERGFRRHGPVDDEWGRSESLDPDNVGDIADEGPGHRG
Number of Associated Samples 101
Number of Associated Scaffolds 132

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 71.54 %
% of genes near scaffold ends (potentially truncated) 31.82 %
% of genes from short scaffolds (< 2000 bps) 81.82 %
Associated GOLD sequencing projects 91
AlphaFold2 3D model prediction Yes
3D model pTM-score0.15

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (84.091 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(19.697 % of family members)
Environment Ontology (ENVO) Unclassified
(32.576 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(53.030 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 8.33%    β-sheet: 0.00%    Coil/Unstructured: 91.67%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.15
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 132 Family Scaffolds
PF13714PEP_mutase 22.73
PF02954HTH_8 21.97
PF12697Abhydrolase_6 6.82
PF00561Abhydrolase_1 4.55
PF00196GerE 3.79
PF01370Epimerase 3.03
PF08281Sigma70_r4_2 2.27
PF04542Sigma70_r2 2.27
PF13460NAD_binding_10 1.52
PF07883Cupin_2 1.52
PF00158Sigma54_activat 1.52
PF03544TonB_C 1.52
PF13185GAF_2 0.76
PF09360zf-CDGSH 0.76
PF16694Cytochrome_P460 0.76
PF04095NAPRTase 0.76
PF02687FtsX 0.76
PF00797Acetyltransf_2 0.76
PF10137TIR-like 0.76
PF12464Mac 0.76
PF01595CNNM 0.76
PF01435Peptidase_M48 0.76
PF01966HD 0.76
PF00034Cytochrom_C 0.76
PF05368NmrA 0.76
PF00873ACR_tran 0.76

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 132 Family Scaffolds
COG0568DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)Transcription [K] 2.27
COG1191DNA-directed RNA polymerase specialized sigma subunitTranscription [K] 2.27
COG1595DNA-directed RNA polymerase specialized sigma subunit, sigma24 familyTranscription [K] 2.27
COG4941Predicted RNA polymerase sigma factor, contains C-terminal TPR domainTranscription [K] 2.27
COG0810Periplasmic protein TonB, links inner and outer membranesCell wall/membrane/envelope biogenesis [M] 1.52
COG1488Nicotinic acid phosphoribosyltransferaseCoenzyme transport and metabolism [H] 0.76
COG2162Arylamine N-acetyltransferaseSecondary metabolites biosynthesis, transport and catabolism [Q] 0.76

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms84.09 %
UnclassifiedrootN/A15.91 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2170459002|FZY7DQ102GQ6FEAll Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis508Open in IMG/M
3300000891|JGI10214J12806_12156839All Organisms → cellular organisms → Bacteria → Proteobacteria2056Open in IMG/M
3300000956|JGI10216J12902_101620392All Organisms → cellular organisms → Bacteria3000Open in IMG/M
3300000956|JGI10216J12902_102417878All Organisms → cellular organisms → Bacteria1369Open in IMG/M
3300000956|JGI10216J12902_103818789All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales756Open in IMG/M
3300000956|JGI10216J12902_104819526Not Available1278Open in IMG/M
3300000956|JGI10216J12902_108588887All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1585Open in IMG/M
3300000956|JGI10216J12902_114190326All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2030Open in IMG/M
3300000956|JGI10216J12902_116187966All Organisms → cellular organisms → Bacteria1515Open in IMG/M
3300004114|Ga0062593_100008380All Organisms → cellular organisms → Bacteria → Proteobacteria4620Open in IMG/M
3300004157|Ga0062590_100527938All Organisms → cellular organisms → Bacteria → Proteobacteria1015Open in IMG/M
3300004463|Ga0063356_100012154All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae7800Open in IMG/M
3300004463|Ga0063356_105975909Not Available522Open in IMG/M
3300005183|Ga0068993_10028766All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1484Open in IMG/M
3300005290|Ga0065712_10474212All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales668Open in IMG/M
3300005328|Ga0070676_10856327All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis674Open in IMG/M
3300005331|Ga0070670_101074974All Organisms → cellular organisms → Bacteria733Open in IMG/M
3300005332|Ga0066388_105175675All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis662Open in IMG/M
3300005332|Ga0066388_108561223All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis509Open in IMG/M
3300005333|Ga0070677_10166687Not Available1038Open in IMG/M
3300005334|Ga0068869_100300966All Organisms → cellular organisms → Bacteria1295Open in IMG/M
3300005338|Ga0068868_101610452Not Available610Open in IMG/M
3300005347|Ga0070668_101331283All Organisms → cellular organisms → Bacteria → Acidobacteria653Open in IMG/M
3300005353|Ga0070669_100106269All Organisms → cellular organisms → Bacteria → Proteobacteria2124Open in IMG/M
3300005365|Ga0070688_100515636All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales904Open in IMG/M
3300005366|Ga0070659_101110522All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis697Open in IMG/M
3300005440|Ga0070705_100372111All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1049Open in IMG/M
3300005441|Ga0070700_100546174All Organisms → cellular organisms → Bacteria → Proteobacteria899Open in IMG/M
3300005455|Ga0070663_100968612All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales738Open in IMG/M
3300005456|Ga0070678_101481571Not Available635Open in IMG/M
3300005615|Ga0070702_100823688Not Available720Open in IMG/M
3300005713|Ga0066905_100095539All Organisms → cellular organisms → Bacteria2002Open in IMG/M
3300005764|Ga0066903_106431250All Organisms → cellular organisms → Bacteria → Terrabacteria group613Open in IMG/M
3300005840|Ga0068870_10561451All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales770Open in IMG/M
3300005981|Ga0081538_10221452All Organisms → cellular organisms → Bacteria750Open in IMG/M
3300006042|Ga0075368_10558460All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium etli → Rhizobium etli 8C-3515Open in IMG/M
3300006844|Ga0075428_100011520All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae9836Open in IMG/M
3300006871|Ga0075434_100055396All Organisms → cellular organisms → Bacteria → Proteobacteria3940Open in IMG/M
3300006894|Ga0079215_10004947All Organisms → cellular organisms → Bacteria3722Open in IMG/M
3300006903|Ga0075426_10109118All Organisms → cellular organisms → Bacteria1985Open in IMG/M
3300007004|Ga0079218_13492560All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium533Open in IMG/M
3300007004|Ga0079218_13591128Not Available527Open in IMG/M
3300009053|Ga0105095_10095044All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium etli → Rhizobium etli 8C-31615Open in IMG/M
3300009100|Ga0075418_12025230Not Available627Open in IMG/M
3300009147|Ga0114129_10254428All Organisms → cellular organisms → Bacteria2356Open in IMG/M
3300009148|Ga0105243_11976711All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis617Open in IMG/M
3300009176|Ga0105242_12607779All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis554Open in IMG/M
3300009354|Ga0115925_10904307All Organisms → cellular organisms → Bacteria1343Open in IMG/M
3300010362|Ga0126377_10265403All Organisms → cellular organisms → Bacteria1678Open in IMG/M
3300010362|Ga0126377_11940806All Organisms → cellular organisms → Bacteria665Open in IMG/M
3300010376|Ga0126381_102625855Not Available721Open in IMG/M
3300010400|Ga0134122_10531844All Organisms → cellular organisms → Bacteria1071Open in IMG/M
3300010403|Ga0134123_10450532All Organisms → cellular organisms → Bacteria → Proteobacteria1196Open in IMG/M
3300011000|Ga0138513_100007377Not Available1297Open in IMG/M
3300011106|Ga0151489_1532107Not Available591Open in IMG/M
3300011429|Ga0137455_1017215All Organisms → cellular organisms → Bacteria1952Open in IMG/M
3300012022|Ga0120191_10022992All Organisms → cellular organisms → Bacteria907Open in IMG/M
3300012474|Ga0157356_1026297Not Available510Open in IMG/M
3300012517|Ga0157354_1039115All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium etli → Rhizobium etli 8C-3639Open in IMG/M
3300012944|Ga0137410_10313498All Organisms → cellular organisms → Bacteria1245Open in IMG/M
3300014326|Ga0157380_12078913All Organisms → cellular organisms → Bacteria631Open in IMG/M
3300014326|Ga0157380_12419417Not Available590Open in IMG/M
3300015245|Ga0137409_10164369All Organisms → cellular organisms → Bacteria2023Open in IMG/M
3300015371|Ga0132258_10196292All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales4892Open in IMG/M
3300015372|Ga0132256_100230099All Organisms → cellular organisms → Bacteria → Proteobacteria1914Open in IMG/M
3300015372|Ga0132256_101231944All Organisms → cellular organisms → Bacteria861Open in IMG/M
3300015374|Ga0132255_101502169All Organisms → cellular organisms → Bacteria → Proteobacteria1019Open in IMG/M
3300017792|Ga0163161_10125055All Organisms → cellular organisms → Bacteria → Proteobacteria1935Open in IMG/M
3300017965|Ga0190266_10085026All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1251Open in IMG/M
3300017965|Ga0190266_10775312All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis611Open in IMG/M
3300018073|Ga0184624_10101136All Organisms → cellular organisms → Bacteria → Proteobacteria1233Open in IMG/M
3300018422|Ga0190265_10445853All Organisms → cellular organisms → Bacteria1400Open in IMG/M
3300018432|Ga0190275_10548617All Organisms → cellular organisms → Bacteria1197Open in IMG/M
3300018432|Ga0190275_13625034All Organisms → cellular organisms → Bacteria → Proteobacteria500Open in IMG/M
3300018469|Ga0190270_10902734All Organisms → cellular organisms → Bacteria901Open in IMG/M
3300018469|Ga0190270_11364602All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Promicromonosporaceae → Promicromonospora754Open in IMG/M
3300018469|Ga0190270_12834769All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium547Open in IMG/M
3300018476|Ga0190274_10031161All Organisms → cellular organisms → Bacteria → Proteobacteria3643Open in IMG/M
3300018476|Ga0190274_10791615All Organisms → cellular organisms → Bacteria1004Open in IMG/M
3300018476|Ga0190274_11024515All Organisms → cellular organisms → Bacteria → Proteobacteria901Open in IMG/M
3300018476|Ga0190274_12605279All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → Micromonospora acroterricola603Open in IMG/M
3300018481|Ga0190271_10041411All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales3833Open in IMG/M
3300018481|Ga0190271_10964648All Organisms → cellular organisms → Bacteria → Proteobacteria977Open in IMG/M
3300018481|Ga0190271_11474630All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis798Open in IMG/M
3300018481|Ga0190271_12011972All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Promicromonosporaceae → Promicromonospora687Open in IMG/M
3300019356|Ga0173481_10408081All Organisms → cellular organisms → Bacteria → Acidobacteria667Open in IMG/M
3300022756|Ga0222622_10545198All Organisms → cellular organisms → Bacteria833Open in IMG/M
3300025893|Ga0207682_10530004All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales557Open in IMG/M
3300025908|Ga0207643_10029665All Organisms → cellular organisms → Bacteria3043Open in IMG/M
3300025908|Ga0207643_10265730All Organisms → cellular organisms → Bacteria1060Open in IMG/M
3300025923|Ga0207681_10230851Not Available1436Open in IMG/M
3300025925|Ga0207650_10440028All Organisms → cellular organisms → Bacteria → Proteobacteria1084Open in IMG/M
3300025925|Ga0207650_11092532All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis679Open in IMG/M
3300025926|Ga0207659_10863361All Organisms → cellular organisms → Bacteria778Open in IMG/M
3300025941|Ga0207711_11140595All Organisms → cellular organisms → Bacteria720Open in IMG/M
3300025960|Ga0207651_11030621Not Available736Open in IMG/M
3300025972|Ga0207668_11084728All Organisms → cellular organisms → Bacteria → Acidobacteria717Open in IMG/M
3300026075|Ga0207708_10554266All Organisms → cellular organisms → Bacteria → Proteobacteria970Open in IMG/M
3300026075|Ga0207708_10971155Not Available737Open in IMG/M
3300026121|Ga0207683_11341833Not Available662Open in IMG/M
3300027873|Ga0209814_10017598All Organisms → cellular organisms → Bacteria2875Open in IMG/M
3300027886|Ga0209486_11105235All Organisms → cellular organisms → Bacteria538Open in IMG/M
3300027909|Ga0209382_10014964All Organisms → cellular organisms → Bacteria9517Open in IMG/M
3300028597|Ga0247820_11281265All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium531Open in IMG/M
3300028784|Ga0307282_10625433All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium522Open in IMG/M
3300028802|Ga0307503_10127324All Organisms → cellular organisms → Bacteria → Proteobacteria1125Open in IMG/M
3300028809|Ga0247824_10068616All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium etli → Rhizobium etli 8C-31840Open in IMG/M
3300028812|Ga0247825_10113208All Organisms → cellular organisms → Bacteria1843Open in IMG/M
3300028812|Ga0247825_10567827All Organisms → cellular organisms → Bacteria811Open in IMG/M
3300028812|Ga0247825_10988270All Organisms → cellular organisms → Bacteria611Open in IMG/M
3300031114|Ga0308187_10133585All Organisms → cellular organisms → Bacteria810Open in IMG/M
3300031226|Ga0307497_10740098All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis511Open in IMG/M
3300031228|Ga0299914_10468467All Organisms → cellular organisms → Bacteria1091Open in IMG/M
3300031538|Ga0310888_11017977All Organisms → cellular organisms → Bacteria521Open in IMG/M
3300031547|Ga0310887_10045902All Organisms → cellular organisms → Bacteria1933Open in IMG/M
3300031858|Ga0310892_11406215Not Available501Open in IMG/M
3300031908|Ga0310900_10614028All Organisms → cellular organisms → Bacteria861Open in IMG/M
3300031908|Ga0310900_10783519All Organisms → cellular organisms → Bacteria770Open in IMG/M
3300031908|Ga0310900_11523810Not Available564Open in IMG/M
3300031943|Ga0310885_10026760All Organisms → cellular organisms → Bacteria2214Open in IMG/M
3300031944|Ga0310884_10214358All Organisms → cellular organisms → Bacteria → Acidobacteria1035Open in IMG/M
3300032013|Ga0310906_10613299All Organisms → cellular organisms → Bacteria751Open in IMG/M
3300032075|Ga0310890_11595406All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis539Open in IMG/M
3300032122|Ga0310895_10137914All Organisms → cellular organisms → Bacteria1040Open in IMG/M
3300032144|Ga0315910_10172447All Organisms → cellular organisms → Bacteria1616Open in IMG/M
3300032157|Ga0315912_10027007All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae4652Open in IMG/M
3300032157|Ga0315912_10039572All Organisms → cellular organisms → Bacteria3760Open in IMG/M
3300032180|Ga0307471_100470719All Organisms → cellular organisms → Bacteria1400Open in IMG/M
3300032211|Ga0310896_10471913All Organisms → cellular organisms → Bacteria683Open in IMG/M
3300034150|Ga0364933_009517All Organisms → cellular organisms → Bacteria2234Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil19.70%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil12.88%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil6.06%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere6.06%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere5.30%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere3.79%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere3.79%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil3.03%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil3.03%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere3.03%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil2.27%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil1.52%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.52%
Unplanted SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil1.52%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil1.52%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere1.52%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere1.52%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere1.52%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.52%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.52%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere1.52%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere1.52%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment0.76%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands0.76%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil0.76%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.76%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.76%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.76%
TerrestrialEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial0.76%
Grass SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil0.76%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.76%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil0.76%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere0.76%
SedimentEnvironmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment0.76%
SoilEnvironmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil0.76%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere0.76%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.76%
Populus EndosphereHost-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere0.76%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere0.76%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.76%
Swimming Pool Sandfilter BackwashEngineered → Built Environment → Unclassified → Unclassified → Unclassified → Swimming Pool Sandfilter Backwash0.76%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2170459002Grass soil microbial communities from Rothamsted Park, UK - March 2009 direct MP BIO 1O1 lysis 0-21 cmEnvironmentalOpen in IMG/M
3300000891Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soilEnvironmentalOpen in IMG/M
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300004114Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5EnvironmentalOpen in IMG/M
3300004157Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2EnvironmentalOpen in IMG/M
3300004463Combined assembly of Arabidopsis thaliana microbial communitiesHost-AssociatedOpen in IMG/M
3300005183Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D1EnvironmentalOpen in IMG/M
3300005290Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1Host-AssociatedOpen in IMG/M
3300005328Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaGHost-AssociatedOpen in IMG/M
3300005331Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaGHost-AssociatedOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005333Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaGHost-AssociatedOpen in IMG/M
3300005334Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2Host-AssociatedOpen in IMG/M
3300005338Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2Host-AssociatedOpen in IMG/M
3300005347Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaGHost-AssociatedOpen in IMG/M
3300005353Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaGHost-AssociatedOpen in IMG/M
3300005365Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaGEnvironmentalOpen in IMG/M
3300005366Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaGHost-AssociatedOpen in IMG/M
3300005440Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaGEnvironmentalOpen in IMG/M
3300005441Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaGEnvironmentalOpen in IMG/M
3300005455Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaGHost-AssociatedOpen in IMG/M
3300005456Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaGHost-AssociatedOpen in IMG/M
3300005615Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaGEnvironmentalOpen in IMG/M
3300005713Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005840Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2Host-AssociatedOpen in IMG/M
3300005981Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1Host-AssociatedOpen in IMG/M
3300006042Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3Host-AssociatedOpen in IMG/M
3300006844Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2Host-AssociatedOpen in IMG/M
3300006871Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3Host-AssociatedOpen in IMG/M
3300006894Agricultural soil microbial communities from Utah to study Nitrogen management - NC ControlEnvironmentalOpen in IMG/M
3300006903Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5Host-AssociatedOpen in IMG/M
3300007004Agricultural soil microbial communities from Utah to study Nitrogen management - NC CompostEnvironmentalOpen in IMG/M
3300009053Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 19-21cm March2015EnvironmentalOpen in IMG/M
3300009100Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2Host-AssociatedOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009148Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaGHost-AssociatedOpen in IMG/M
3300009176Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaGHost-AssociatedOpen in IMG/M
3300009354Microbial communities from sand-filter backwash in Singapore swimming pools - PR-2EngineeredOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300010400Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2EnvironmentalOpen in IMG/M
3300010403Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3EnvironmentalOpen in IMG/M
3300011000Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t6i015EnvironmentalOpen in IMG/M
3300011106Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMC (Metagenome Metatranscriptome) (version 2)EnvironmentalOpen in IMG/M
3300011429Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT600_2EnvironmentalOpen in IMG/M
3300012022Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - C6EnvironmentalOpen in IMG/M
3300012474Unplanted soil (control) microbial communities from North Carolina - M.Soil.3.yng.040610EnvironmentalOpen in IMG/M
3300012517Unplanted soil (control) microbial communities from North Carolina - M.Soil.6.yng.070610EnvironmentalOpen in IMG/M
3300012944Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012960Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MGEnvironmentalOpen in IMG/M
3300014326Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaGHost-AssociatedOpen in IMG/M
3300015245Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300017792Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaGHost-AssociatedOpen in IMG/M
3300017965Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 TEnvironmentalOpen in IMG/M
3300018073Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1EnvironmentalOpen in IMG/M
3300018422Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 TEnvironmentalOpen in IMG/M
3300018432Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 TEnvironmentalOpen in IMG/M
3300018469Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 TEnvironmentalOpen in IMG/M
3300018476Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 TEnvironmentalOpen in IMG/M
3300018481Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 TEnvironmentalOpen in IMG/M
3300019356Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)EnvironmentalOpen in IMG/M
3300022756Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1EnvironmentalOpen in IMG/M
3300025893Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025908Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025923Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025925Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025926Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025941Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025960Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025972Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026075Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026121Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300027873Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)Host-AssociatedOpen in IMG/M
3300027886Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)EnvironmentalOpen in IMG/M
3300027909Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)Host-AssociatedOpen in IMG/M
3300028597Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14EnvironmentalOpen in IMG/M
3300028784Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121EnvironmentalOpen in IMG/M
3300028802Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_SEnvironmentalOpen in IMG/M
3300028809Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48EnvironmentalOpen in IMG/M
3300028812Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48EnvironmentalOpen in IMG/M
3300031114Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031226Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_SEnvironmentalOpen in IMG/M
3300031228Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT153D57EnvironmentalOpen in IMG/M
3300031538Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1EnvironmentalOpen in IMG/M
3300031547Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4EnvironmentalOpen in IMG/M
3300031858Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2EnvironmentalOpen in IMG/M
3300031908Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1EnvironmentalOpen in IMG/M
3300031943Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2EnvironmentalOpen in IMG/M
3300031944Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1EnvironmentalOpen in IMG/M
3300032013Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3EnvironmentalOpen in IMG/M
3300032075Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3EnvironmentalOpen in IMG/M
3300032122Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4EnvironmentalOpen in IMG/M
3300032144Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soilEnvironmentalOpen in IMG/M
3300032157Garden soil microbial communities collected in Santa Monica, California, United States - V. faba soilEnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032211Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1EnvironmentalOpen in IMG/M
3300034150Sediment microbial communities from East River floodplain, Colorado, United States - 25_j17EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
E1_094804402170459002Grass SoilMRSDERGQTRWALDEPGPQTESSSERGFRTRGPVDDEWGRSESLDPDDVGDIADE
JGI10214J12806_1215683923300000891SoilMPEFGWGVDEPGPQTESSIERGFRLHGPVDDEWGRSESIDPDNVGDIADEGPGHRG*
JGI10216J12902_10162039233300000956SoilMSAVPWEDFGWGGLDDPGPQTESAIERGFRTAGPIDDQWGRSESLDPDNVGDIADEGPGHRG*
JGI10216J12902_10241787823300000956SoilMGSAAARGPGRGPWHFGWGGAGEPGPQTESAIERGFRARGPIDDQWGRSESFDPDNVGDIADEGTGHRG*
JGI10216J12902_10381878923300000956SoilMSTVEHRPGLGREPGWGGLDEPGPQTEGSIEPGYRLRGRVDDEWGLSESLDPDNVGDIADEGIGHRG*
JGI10216J12902_10481952613300000956SoilMTLFGWGIDEPGPQTESSVERGFRRAGPVDDQWGRSDSLDPDNVGDIADEGPGHRG*
JGI10216J12902_10858888713300000956SoilMSTVARRILGRGGLDDPGPQHRQWIERGFRLRGPAPQSGTAEWGRSESLDPDNVGDIADEGAGHRG*
JGI10216J12902_11419032623300000956SoilMPEFGWGLDEPGPQTESSIERGFRLHGPVDDEWGRSESIDPDNVGDIADEGTGHRG*
JGI10216J12902_11618796623300000956SoilMTLFGWSGQEGPGPQTESSIERGFRRAGPVDDEWGRSDSLDPDNVGDIADEGPGHRG*
Ga0062593_10000838033300004114SoilMPEFGWGLDEPGPQTESSIERGFRLHGPVDDEWGRSESIDPDNVGDIADEGPGHRG*
Ga0062590_10052793823300004157SoilMSTVAQGVSTGVVWQEFGWGLDEPGPQTESSIERGFRLHGPVDDEWGRSESLDPDNVGDIADEGTGHRG*
Ga0063356_10001215473300004463Arabidopsis Thaliana RhizosphereMITLWQEFGWGEPNEPGPQTESSIERGYRLREHVDDEWGRSESLDPDNVGDIADEGPGHRG*
Ga0063356_10597590913300004463Arabidopsis Thaliana RhizosphereEFGWGELDEPGPQTEDSIERGFRLRGPVDDEYRSESLDPDRVGDIADEGTGHRG*
Ga0068993_1002876633300005183Natural And Restored WetlandsMREEASNLMRRIGRAIGWGGLDESGPKTESSTERGFRIRGLDDNECGRSESLDPDNVGDIADEGMGHRG*
Ga0065712_1047421223300005290Miscanthus RhizosphereMWPDFGLGAPDDPGPQTESSIERGFRLPGPVDNEWGRSESLDPDNVGDIADEGAGHRG*
Ga0070676_1085632723300005328Miscanthus RhizosphereMPEFGWGLDEPGPQTESSIERGFRLHGPVDDEWGRSESIDPDNVGDIADEGP
Ga0070670_10107497423300005331Switchgrass RhizosphereMRVRAPRAARDFLQEFGWEDPDEPGSQTESSIERGFRLPGPVDDQWGQSDSIDPDRFGDIADEGTGHRG*
Ga0066388_10517567513300005332Tropical Forest SoilVRTPWQEFGWGDVDEPGPQTEDSIERGFRDPGVVDDLFGHSESFDPDNVGDIADEG
Ga0066388_10856122323300005332Tropical Forest SoilVRTPWQEFGWGDGDEPGPQTEDSIERGFREPGVVDDRYGRSDSFDPDNVGDIADEGPGHRG*
Ga0070677_1016668723300005333Miscanthus RhizosphereMPEFGWGLDEPGPQTESSIERGFRRHGPVDDEWGRSESLDPDNVGDIADEGPGHRG*
Ga0068869_10030096623300005334Miscanthus RhizosphereMTPTTFIGFWQTIGRSGFDEPGPQTESSIERGYRRRGPVDDEWGRSECLDPDNVGDIADEGRGHRG*
Ga0068868_10161045223300005338Miscanthus RhizosphereVWQEFGWGLDEPGPQTESSNERGFRRHGPVDDEWGRSESLDPDNVGDIADEGTGHRG*
Ga0070668_10133128323300005347Switchgrass RhizosphereMIWHGILELDESWPRTEEVIENDRRLHVSGAADDQWGRSESLDPDNVGDIADEGAGHRG*
Ga0070669_10010626923300005353Switchgrass RhizosphereMSTVAQGVSAGVVWQEFGWGLDEPGPQTESSNERGFRRHGPVDDEWGRSESLDPDNVGDIADEGTGHRG*
Ga0070688_10051563623300005365Switchgrass RhizosphereMSTVVQGVSTGVVWQEFGWGLDEPGPQTESSIERGFRLHGPVDDEWGRSESLDPDNVGDIADEGTGHRG*
Ga0070659_10111052213300005366Corn RhizosphereMPEFGWGLDEPGPQTESSIERGFRLHGPVDDEWGRSESIDPDNVGDIADEG
Ga0070705_10037211143300005440Corn, Switchgrass And Miscanthus RhizosphereVRSPWREFGWGGLDEPGPQTEDSIERGFRGPGAVDDEFGRSESIDPDNVGDIADEGAGHRG*
Ga0070700_10054617423300005441Corn, Switchgrass And Miscanthus RhizosphereMTMWPDFGLGARDDPGPQTESSIERGFRLPGPVDNEWGRSESLDPDNVGDIADEGAGHRG
Ga0070663_10096861223300005455Corn RhizosphereMWPDFGLGARDDPGPQTESSIERGFRLPGPVDNEWGRSESLDPDNVGDIADEGAGHRG*
Ga0070678_10148157123300005456Miscanthus RhizosphereDARQWRRHEHRRARVSAGVVWQEFGWGLDEPGPQTESSNERGFRRHGPVDDEWGRSESLDPDNVGDIADEGTGHRG*
Ga0070702_10082368823300005615Corn, Switchgrass And Miscanthus RhizosphereVSAGVVWQEFGWGLDEPGPQTESSNERGFRRHGPVDDEWGRSESLDPDNVGDIADEGTGHRG*
Ga0066905_10009553923300005713Tropical Forest SoilMAVQVRGMGQEFSREGLDEPRPLNESSIEREFRLRGPVDDEWGRSESLDPDNVGDIADEGVGHRG*
Ga0066903_10643125023300005764Tropical Forest SoilVRIGQEFSREGLDQPRPLNERSIEREFRLRGPVDDEWGRSESLDPDNVGDIADEG
Ga0068870_1056145123300005840Miscanthus RhizosphereMSTVVQGVSTGVVWQEFGWGLDEPGPQTESSNERGFRRHGPVDDEWGRSESLDPDNVGDIADEGTGHRG*
Ga0081538_1022145223300005981Tabebuia Heterophylla RhizosphereMRGLWQEFGWGGPEPGPQTESSIERGFRLRGPVDDQWGRSESLDPDKVGDIADEGAGHRG
Ga0075368_1055846013300006042Populus EndosphereMIAIPWQDFGLGQFDEPGPQTESSIERGFRLPGPVDNEWGRSESFDPDNVGDIADEGPGHRG*
Ga0075428_10001152013300006844Populus RhizosphereMNSNASWPEFGWGFDDAGPQTESSIERGFRLPGPVDDEWGRSESFDPDRVGDIADEGTGHRG*
Ga0075434_10005539633300006871Populus RhizosphereMSTVAQEVGGGGLDEPGPQTESSIERRFRPRGSVDDEWGRSESIDPDNVGDIADEGMGHRG*
Ga0079215_1000494753300006894Agricultural SoilMGDFRSPWQEFGWGEVDEPGPQTEDSIERGFRRSGAVDGEFGRSESLDPDNVGDIADEGPGHRG*
Ga0075426_1010911823300006903Populus RhizosphereMSTVAQEVGRGGLDEHGPQTESSIEPRFRICGSVDDEWGRSESLDPDNVGDIADEGMGHRG*
Ga0079218_1349256023300007004Agricultural SoilWHELNSARLDEPRPQTIERGFRVRGPVDDEWGRSESLDPDNVGDIADEGAGHRG*
Ga0079218_1359112813300007004Agricultural SoilVGDMWQEFGWGELDEPGPQTEDSIERGFRLRGPVDDEWGRSESLDPDRVGDIADEGTGHRG*
Ga0105095_1009504423300009053Freshwater SedimentMSTVLWREFGSRGFDEPGPQTESSIERGFRPPGPVDDEWGRSESLDPDNVGDIADEG
Ga0075418_1202523023300009100Populus RhizosphereMFGWGELDAPGPQTERLIERGFRLPGSVDDQWGRSESLDPDNVGDIADEGAGHRG*
Ga0114129_1025442813300009147Populus RhizosphereMNSNASWPEFGWGLNDPGPQTESSIERGFRLPGPVDDEWGRSESFDPDRVGDIADEGTGHRG*
Ga0105243_1197671113300009148Miscanthus RhizosphereMSAVQSRDSAWRGLDEPGPQAEDSIERGFRLRGPVDEEWGRSESLDPDNVGDIADEGAGHRG*
Ga0105242_1260777923300009176Miscanthus RhizosphereMSDWGSLAEPGPQTETSIERGFRLAEPVDEQWGRAESFDPDNVGDIADEGAG
Ga0115925_1090430713300009354Swimming Pool Sandfilter BackwashLDFAEFDEPGSQTESAVERGFRPRGPIDDEWGKSDSVDPENLGDIADEGAGHRG*
Ga0126377_1026540323300010362Tropical Forest SoilMTTRASDEARQPTDSSTERRGRFVGPVGDDWGRSESFDPDNVGDIADEGMGHRG*
Ga0126377_1194080623300010362Tropical Forest SoilMALAQVRGLWQEFGWGKLEEPRPQSEGSIERDFRLRGPVDEEWGRSESLDPDNVADIADEGAGHRG*
Ga0126381_10262585513300010376Tropical Forest SoilMEHGMSSVLDEPGPQTEPSIEHGVHLRRSVEDDWGRSESLDPDNVGDIADEGAGHRE*
Ga0134122_1053184423300010400Terrestrial SoilMSTVAQEVGRGGLDEPGPQTESSSERGFRIRGSVDDEWGRSESIDPDNVGDIADEGMGHRG*
Ga0134123_1045053213300010403Terrestrial SoilMSTVAQEVGRGGLDEPGLQTESSIEPRFRIRGSVDDEWGRSESIDPDNVGDI
Ga0138513_10000737713300011000SoilMSTVVWKKFGWRGLDEPGAQTESSIEREFGHPGPVPESINVEWGRSESLDPDNVGDVADEGAGHRG*
Ga0151489_153210723300011106SoilMFGWGGLDAPGSQTEGLIERGFRLPGPVDDQWGRSESLDPDNVGDIADEGAGHRG*
Ga0137455_101721523300011429SoilMGDRWQEFGWGEPDEPGPQTESSIERGFRPPGSVDDEWGRSESLDPDDVGDIADEGPGHRG*
Ga0120191_1002299233300012022TerrestrialEFGWGGPEPGPQTESSIERGFRLRGPVDGEWGRSESLDPDNVGDIADEGPGHRG*
Ga0157356_102629723300012474Unplanted SoilMSAVPWQDFGWGGLDDPGPQTESSIERGFRAAGPVDNEWGRSESLDPDNVGDIADEGPGHRG*
Ga0157354_103911523300012517Unplanted SoilMPEFGWGLDEPGPQTESSIERGFRRYGPVDLEWGRSESLDPDNVGDIADEGAGHRG*
Ga0137410_1031349813300012944Vadose Zone SoilVRRLLQKFESVLVDEPGPRAESSLVRKFRVRRPVDDEWGRSESIDPDNVGDIADEGLGHR
Ga0164301_1038251533300012960SoilGPEGDGSIEGASDFRGSVDDQWGRSESFDPDNVGDIADEGFGHRG*
Ga0157380_1207891323300014326Switchgrass RhizosphereVFDKRAMRVRAPRAARDFLQEFGWEDPDEPGSQTESSIERGFRLPGPVDDQWGQSDSIDPDRFGDIADEGTGHRG*
Ga0157380_1241941723300014326Switchgrass RhizosphereMSGLWQEFGWGGEPGPQTESSIERGFRRAGPVDDEWGRSESLDPDNVGDIADEGTGHRG*
Ga0137409_1016436913300015245Vadose Zone SoilMRQGSVRVRRLLQKFESVLVDEPGPRAESSLVRKFRVRRPVDDEWGRSESIDPDNVGDIADEGLGHR
Ga0132258_1019629223300015371Arabidopsis RhizosphereMPEFGWGLDEPGPQTESSIERGFRRYGPVDLEWGRSESLDPDNVGDIADEGPGHRG*
Ga0132256_10023009923300015372Arabidopsis RhizosphereMPEFGWGFDEPGPQTESSIERGFRRYGPVDLEWGRSESLDPDNVGDIADEGPGHRG*
Ga0132256_10123194413300015372Arabidopsis RhizosphereLDDPGPQTESSIERGFRAAGPVDNEWGRSESLDPDNVGDIADEGPGHRG*
Ga0132255_10150216923300015374Arabidopsis RhizosphereMSAVPWQDFGWGGLDDPGPQTESSIERGFRAAGPVDNEWGRSESLDPDNVGDIADEGAGHRG*
Ga0163161_1012505523300017792Switchgrass RhizosphereMSTVAQGVSAGVVWQEFGWGLDEPGPQTESSIERGFRRHGPVDDEWGRSESLDPDNVGDIADEGTGHRG
Ga0190266_1008502623300017965SoilMSEFGWGFNEAGPQTESSIERGFRRPGPVDDEWGRSDSLDPDNVGDIADEGTGHRG
Ga0190266_1077531223300017965SoilVRELWPEFGWGEADEPGPQTESAIERGFRVPGPVDDELGRSESLDPQNVGDIADEGPGHR
Ga0184624_1010113623300018073Groundwater SedimentMWPDFGLGAPDDPGPQTESSIERGFRLPGPVDNEWGRSESLDPDNVGDIADEGAGHRG
Ga0190265_1044585323300018422SoilMSTVAQRVDEPGPQTESTIQREFRVRGSVDDEWGRSESLDPDNVGDIADEGAGHRG
Ga0190275_1054861723300018432SoilMSTVAQHVSSGEIRGLWQEFGWGEFDEPGPQTESAVERGFRLSGPVDDEWGRSDSLDPDNVGDIADEGTGHRG
Ga0190275_1362503413300018432SoilSPVCSGDGGMTMWPDFGLGALDDPGPQTESAIERGFRLPGPVDNEWGRSESLDPDNVGDIADEGAGHRG
Ga0190270_1090273423300018469SoilMITLWQEFGWGEPNEPGPQTESSIERGYRLREHVDDEWGRSESLDPDNVGDIADEGPGHR
Ga0190270_1136460223300018469SoilMGGLWQEFGWGGEPGPQTESSIERGFRRAGPVDDEWGRSESLDPDNVGDIADEGTGHRG
Ga0190270_1283476913300018469SoilAIRQETAQASGLWQEFDWGPLAEPGPRTESSVERGFRVRGPVDDEWGRSESIDPDNVGDIADEGMGHRG
Ga0190274_1003116123300018476SoilMSVVAWPDSGWGGLDDPGPQTESSIERGFRLPGPVDNEWGRSESLDPDNVGDIADEGTGHRG
Ga0190274_1079161513300018476SoilMSTVLWKKFGRTGLDALGQQTESSIEREFRLRGPAPESINVEWGRSESLDPDNVG
Ga0190274_1102451523300018476SoilVSTFLWKGFGWGALDEPGPRTDSSMEREFRHRGPVADQWGRSESLDPDNVGDIADEGAGHRG
Ga0190274_1260527913300018476SoilMSGLWQEFGWGGEPGPQTESSIERGFRRAGPVDDEWGRSESLDPDNVGDIADEGTGHRG
Ga0190271_1004141123300018481SoilMPEFGWGLDEPGPQTESSIERGFRHPGPVDDEWGRSDSLDPDNVGDIADEGTGHRG
Ga0190271_1096464823300018481SoilMWPDFGLGAPDDPGPQTESSIERGFRLPGPVDNEWGRSESLDPDNVGDIADEGTGHRG
Ga0190271_1147463013300018481SoilMSAAAHRPGVWRELGLGGLDEPGPQTESSIERGFRLRGPVDDQWGHSESVDPDNVGDIADEGTGHRG
Ga0190271_1201197213300018481SoilGWGGEPGPQTESSVERGFRRAGPVDDEWGRSESLDPDNVGDIADEGTGHRG
Ga0190271_1341091313300018481SoilMSAVPWQDFGWGGLDDPGPQTESAIERGFRPAGPVDNEWGRSESLDP
Ga0173481_1040808123300019356SoilVRNPWQEFGWGEVDEPGPQTESSIERGFRLPGPIDDQWGRSDDLDPDNVGDIADEG
Ga0222622_1054519823300022756Groundwater SedimentLPRISSVLGVELVAQGNEVAWGRRDERTPQTGGSIERETRRAGPVEDEWGRSESLDPDNVGDIADEGAGHRG
Ga0207682_1053000423300025893Miscanthus RhizosphereMPEFGWGLDEPGPQTESSIERGFRRHGPVDDEWGRSESLDPDNVGDIADEGPGHRG
Ga0207643_1002966533300025908Miscanthus RhizosphereMPEFGWGLDEPGPQTESSIERGFRLHGPVDDEWGRSESIDPDNVGDIADEGPGHRG
Ga0207643_1026573023300025908Miscanthus RhizosphereMSTVVQGVSTGVVWQEFGWGLDEPGPQTESSNERGFRRHGPVDDEWGRSESLDPDNVGDIADEGTGHRG
Ga0207681_1023085123300025923Switchgrass RhizosphereRRARVSAGVVWQEFGWGLDEPGPQTESSNERGFRRHGPVDDEWGRSESLDPDNVGDIADEGTGHRG
Ga0207650_1044002813300025925Switchgrass RhizospherePGALDAERTLMPEFGWGLDEPGPQTESSIERGFRLHGPVDDEWGRSESIDPDNVGDIADEGPGHRG
Ga0207650_1109253223300025925Switchgrass RhizosphereMRVRAPRAARDFLQEFGWEDPDEPGSQTESSIERGFRLPGPVDDQWGQSDSIDPDRFGDIADEGTGHRG
Ga0207659_1086336123300025926Miscanthus RhizosphereMVGGFEPEFGWGEPDEPGPQTENSIERGFRLAGPVDDEWGRSESVDPDNVGDIADEGAGHRG
Ga0207711_1114059533300025941Switchgrass RhizosphereMTPTTFIGFWQTIGRSGFDEPGPQTESSIERGYRRRGPVDDEWGRSESLDPDNVGDIADEGTGHRG
Ga0207651_1103062113300025960Switchgrass RhizosphereRGTRRDVTAVHCHRRAASPVCSGDRSMTMWPDFGLGAPDDPGPQTESSIERGFRLPGPVDNEWGRSESLDPDNVGDIADEGAGHRG
Ga0207668_1108472823300025972Switchgrass RhizosphereMIWHGILELDESWPRTEEVIENDRRLHVSGAADDQWGRSESLDPDNVGDIADEGAGHRG
Ga0207708_1055426623300026075Corn, Switchgrass And Miscanthus RhizosphereMWPDFGLGARDDPGPQTESSIERGFRLPGPVDNEWGRSESLDPDNVGDIADEGAGHRG
Ga0207708_1097115513300026075Corn, Switchgrass And Miscanthus RhizosphereRRAERMPEFGWGLDEPGPQTESSIERGFRRHGPVDDEWGRSESLDPDNVGDIADEGPGHR
Ga0207683_1134183323300026121Miscanthus RhizosphereDARQWRRHEHRRARVSAGVVWQEFGWGLDEPGPQTESSNERGFRRHGPVDDEWGRSESLDPDNVGDIADEGTGHRG
Ga0209814_1001759843300027873Populus RhizosphereVRTPWQEFGWGDVDEPGPQTEDSIERGFRRRGLVDDQWGRSESVDPDNVGDIADEGTGHR
Ga0209486_1110523513300027886Agricultural SoilWGEPNEPGPQTESSIERGYRLREHVDDEWGRSESLDPDNVGDIADEGPGHRG
Ga0209382_1001496483300027909Populus RhizosphereMNSNASWPEFGWGFDDAGPQTESSIERGFRLPGPVDDEWGRSESFDPDRVGDIADEGTGHRG
Ga0247820_1128126513300028597SoilMSTVELGPGLWQELGWRGFDEPGPQTESSIERGFRLHGPVDDEWGRSDSLDPDNVGDIADEG
Ga0307282_1062543313300028784SoilIRQEAAQARPWQEFGWTGFDEPRPQSESSIERETRLRGLIDDEWGRSESLDPDNVGDIADEGAGHRG
Ga0307503_1012732423300028802SoilMWPEFGWGEIDEPGPQTENSIERGFRFREAVDDEWGRSESLDPDRVGDIADEGTGHRG
Ga0247824_1006861623300028809SoilMSTVELGPGLWQELGWRGFDEPGPQTESSIERGFRLHGPVDDEWGRSDSLDPDNVGDIADEGTGHRG
Ga0247825_1011320823300028812SoilVRVTSAGATLVTTAPLMSSVFTWQEFGWGERDAPGPQTESSIERGFRMAGPLDDDWGRSDGLDPDNVGDIADEGMGHRG
Ga0247825_1056782723300028812SoilVVTTAPMMSTAFAWQEFGWGERDAPGPQTESSIERGFRAAGPLDDEWGRSDGLDPDNVGDIADEGMGHRG
Ga0247825_1098827013300028812SoilMASVREETGQMSGLWQEFGWGGDPGPQTESSIERGFRRAGPVDDEWGRSESLDPDNVGDIADEGTGHRG
Ga0308187_1013358523300031114SoilRMHGIGQEVGLRRLDQRGRESESSIERDFRLRRPVDGEWGRSESLDPDNVGDIADEGAGHRG
Ga0307497_1074009823300031226SoilMPSDERGQTRWALDEPGPQTESSSERGFRTRGPVDDEWGRSESLDPDDVGDIADEGMGHR
Ga0299914_1046846723300031228SoilVRGLWQKFDWSELAEPGPQTESSIERGFRLRGPVDDEWGRSESLDPDNVGDIADEGPGHR
Ga0310888_1101797723300031538SoilMSTVAQGVSTGVVWQEFGWGLDEPGPQTESSIERGFRLHGPVDDEWGRSESLDPDNVGDIADEGTGHRG
Ga0310887_1004590233300031547SoilMWQEFGWGEIDEPGPQTENSIERGFRLRGPVDDEWGRSESLDPDRVGDIADEGTGHRG
Ga0310892_1140621513300031858SoilGEPDEPGPQTENSIERGFRLAGTVDHEWGRSDSVDPDNVGDIADEGTGHRG
Ga0310900_1061402823300031908SoilMIWQDGGWREFTDRGPQTERSIERGDRLRHADNHWGRSESLDPDNVGDIADEGAGHRG
Ga0310900_1078351923300031908SoilMGAVPWQDFGWGGLEDPGPQTESAIERGFRAAGPVDDQWGRSESLDPDNVGDIADEGPGHRG
Ga0310900_1152381023300031908SoilQEFGWGEPDEPGPQTENSIERGFRLAGTVDHEWGRSDSVDPDNVGDIADEGTGHRG
Ga0310885_1002676023300031943SoilMWQEFGWGELDEPGPQTEDSIERGFRLRGPVDDEWGRSESLDPDRVGDIADEGTGHRG
Ga0310884_1021435823300031944SoilVPMPWQEFGWGEVDEPGPQTESSIERGFRLPGPIDDQWGRSENLDPDDVGDIADEGAGHRGKAAGPMRR
Ga0310906_1061329923300032013SoilLCRGPGPGALDAERTLMPEFGWGLDEPGPQTESSIERGFRLHGPVDDEWGRSESIDPDNVGDIADEGPGHRG
Ga0310890_1159540613300032075SoilMSTVVQGVSTGVVWQEFGWGLDEPGPQTESSIERGFRLHGPVDDEWGRSESLDPDNVGDIADEGTGHRG
Ga0310895_1013791423300032122SoilMSTVAQGVSAGVVWQEFGWGLDEPGPQTESSIERGFRLHGPVDDEWGRSESLDPDNVGDIADEGTGHRG
Ga0315910_1017244733300032144SoilMPEFGWGLDEPGPQTESSIERGFRSHGPVDDEWGRSESLDPDNVGDIADEGPGHRG
Ga0315912_1002700723300032157SoilMISPWQEFGWGLDEPGPQTESSIERGFRLAGPVDDEWGRSDGLDPDSVGDIADEGAGHRG
Ga0315912_1003957243300032157SoilMEFGWAVDDAGPQTESSIERGFRARGPVDDEWGRSDSLDPDKVGDIADEGAGHRG
Ga0307471_10047071933300032180Hardwood Forest SoilEVGRGGLDESGPQTESSIEPRFRLRGSVDDEWGRSESIDPDNVGDIADEGMGHRG
Ga0310896_1047191323300032211SoilMSTVEHRPGLGREPGWGGLDEPGPLTEGSLEPGYRLRGRVDDEWGLSESLDPDNVGDIADEGIGHRG
Ga0364933_009517_1798_19833300034150SedimentMGDRWQEFGWGEPDEPGPQTESSIERGFRPPGSVDDEWGRSESLDPDDVGDIADEGPGHR

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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