Metagenome / Metatranscriptome Family F060650

Overview

Basic Information

• Family ID: F060650
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 132
• Average Sequence Length: 49 residues
• Representative Sequence: MPGSVTSVFSEAEDFEAALREEGCLSLLVTGRGAFRARLTQIALHRLRL
• Number of Associated Samples: 108
• Number of Associated Scaffolds: 132

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 76.23 %
• % of genes near scaffold ends (potentially truncated): 87.12 %
• % of genes from short scaffolds (< 2000 bps): 86.36 %
• Associated GOLD sequencing projects: 100
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.62

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (56.818 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (47.727 % of family members)
• Environment Ontology (ENVO): Unclassified (52.273 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (49.242 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 12.99%
  β-sheet: 15.58%
  Coil/Unstructured: 71.43%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 132 Family Scaffolds
PF13416	SBP_bac_8	6.82
PF01914	MarC	6.06
PF04403	PqiA	3.03
PF14559	TPR_19	3.03
PF00211	Guanylate_cyc	2.27
PF11994	DUF3489	2.27
PF00924	MS_channel	2.27
PF01522	Polysacc_deac_1	1.52
PF03886	ABC_trans_aux	1.52
PF05977	MFS_3	1.52

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 132 Family Scaffolds
COG2095	Small neutral amino acid transporter SnatA, MarC family	Amino acid transport and metabolism [E]	6.06
COG2995	Intermembrane transporter PqiABC subunit PqiA	Cell wall/membrane/envelope biogenesis [M]	3.03
COG0668	Small-conductance mechanosensitive channel	Cell wall/membrane/envelope biogenesis [M]	2.27
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	2.27
COG3264	Small-conductance mechanosensitive channel MscK	Cell wall/membrane/envelope biogenesis [M]	2.27
COG0726	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	Cell wall/membrane/envelope biogenesis [M]	1.52
COG2814	Predicted arabinose efflux permease AraJ, MFS family	Carbohydrate transport and metabolism [G]	1.52
COG0523	Zinc metallochaperone YeiR/ZagA and related GTPases, G3E family	General function prediction only [R]	0.76
COG3791	Uncharacterized conserved protein	Function unknown [S]	0.76

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	56.82 %
Unclassified	root	N/A	43.18 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	56.82 %
Unclassified	root	N/A	43.18 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	56.82 %
Unclassified	root	N/A	43.18 %

Level 4

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.76 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	34.85 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.52 %
Unclassified	root	N/A	43.18 %

Level 5

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	31.82 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.52 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.76 %
Unclassified	root	N/A	43.18 %

Level 6

Name	Rank	Taxonomy	Distribution
Chloroflexia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia	0.76 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	0.76 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	12.12 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.76 %
Unclassified	root	N/A	43.18 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	9.09 %

Level 7

Name	Rank	Taxonomy	Distribution
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.76 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	9.09 %
Amorphaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Amorphaceae	0.76 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	0.76 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.27 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	0.76 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	2.27 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.76 %
Unclassified	root	N/A	43.18 %
unclassified Chloroflexia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia	0.76 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.76 %

Level 8

Name	Rank	Taxonomy	Distribution
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.76 %
Acuticoccus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Amorphaceae → Acuticoccus	0.76 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	9.09 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.27 %
Chloroflexia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	0.76 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	0.76 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.76 %
Methylovirgula	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylovirgula	0.76 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	1.52 %
Rhizobiales bacterium GAS113	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS113	0.76 %
Sinorhizobium/Ensifer group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group	0.76 %
Unclassified	root	N/A	43.18 %

Level 9

Name	Rank	Taxonomy	Distribution
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.76 %
Acuticoccus sediminis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Amorphaceae → Acuticoccus → Acuticoccus sediminis	0.76 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	9.09 %
Chloroflexia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	0.76 %
Gemmatimonas	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas	0.76 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.76 %
Methylovirgula ligni	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylovirgula → Methylovirgula ligni	0.76 %
Microvirga lotononidis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga lotononidis	1.52 %
Rhizobiales bacterium GAS113	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS113	0.76 %
Sinorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Sinorhizobium	0.76 %
Unclassified	root	N/A	43.18 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	2.27 %

Level 10

Name	Rank	Taxonomy	Distribution
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.76 %
Acuticoccus sediminis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Amorphaceae → Acuticoccus → Acuticoccus sediminis	0.76 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	9.09 %
Bradyrhizobium sp. Ec3.3	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3	2.27 %
Chloroflexia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	0.76 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.76 %
Methylovirgula ligni	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylovirgula → Methylovirgula ligni	0.76 %
Microvirga lotononidis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga lotononidis	1.52 %
Rhizobiales bacterium GAS113	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS113	0.76 %
Sinorhizobium fredii group	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Sinorhizobium → Sinorhizobium fredii group	0.76 %
Unclassified	root	N/A	43.18 %
unclassified Gemmatimonas	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → unclassified Gemmatimonas	0.76 %

Level 11

Name	Rank	Taxonomy	Distribution
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.76 %
Acuticoccus sediminis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Amorphaceae → Acuticoccus → Acuticoccus sediminis	0.76 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	9.09 %
Bradyrhizobium sp. Ec3.3	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3	2.27 %
Chloroflexia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	0.76 %
Gemmatimonas sp.	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → unclassified Gemmatimonas → Gemmatimonas sp.	0.76 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.76 %
Methylovirgula ligni	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylovirgula → Methylovirgula ligni	0.76 %
Microvirga lotononidis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga lotononidis	1.52 %
Rhizobiales bacterium GAS113	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS113	0.76 %
Sinorhizobium fredii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Sinorhizobium → Sinorhizobium fredii group → Sinorhizobium fredii	0.76 %
Unclassified	root	N/A	43.18 %

Associated Scaffolds

Scaffold	Taxonomy	Length
2166559005|cont_contig114655	Not Available	519
2199352024|deeps__Contig_71764	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → unclassified Gemmatimonas → Gemmatimonas sp.	1759
3300001545|JGI12630J15595_10118688	Not Available	522
3300002245|JGIcombinedJ26739_101819822	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3	510
3300003368|JGI26340J50214_10170340	Not Available	542
3300004082|Ga0062384_100727946	Not Available	686
3300004092|Ga0062389_101729666	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS113	806
3300004152|Ga0062386_101435060	Not Available	575
3300004635|Ga0062388_101166192	Not Available	760
3300005355|Ga0070671_100442523	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	1114

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Engineered	Engineered	0.76%
Environmental	Environmental	95.45%
Host-Associated	Host-Associated	3.79%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	8.33%
Modeled	Engineered → Modeled	0.76%
Plants	Host-Associated → Plants	3.79%
Terrestrial	Environmental → Terrestrial	87.12%

Category

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	8.33%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.79%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	0.76%
Simulated Communities (Sequence Read Mixture)	Engineered → Modeled → Simulated Communities (Sequence Read Mixture)	0.76%
Soil	Environmental → Terrestrial → Soil	86.36%

Type

Habitat	Taxonomy	Distribution
Loam	Environmental → Terrestrial → Soil → Loam	5.30%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.52%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	78.03%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.27%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	0.76%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified	0.76%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	8.33%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.03%

Subtype

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	8.33%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	65.91%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.30%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.52%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	10.61%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.03%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.27%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.52%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	0.76%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified	0.76%

Habitat

Habitat	Taxonomy	Distribution
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	8.33%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.76%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	0.76%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.79%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.03%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.76%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.76%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.76%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.52%
Simulated	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified → Simulated	0.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	47.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	14.39%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.76%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.52%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.58%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.52%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.76%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.52%

Associated Samples

Taxon OID	Sample Name	Habitat Type
2166559005	Simulated microbial communities from Lyon, France	Engineered
2199352024	Bare-fallow DEEP SOIL	Environmental
3300001545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1	Environmental
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental
3300003368	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2	Environmental
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
cont_0621.00006940	2166559005	Simulated	MPSSVTSVFSEAKDFAVAMREEGCLALLVTGSGQFRARLTQVALLGLRLSR
deeps_01149850	2199352024	Soil	MPSSVTSVFSEAKDFAVAMREEGCLALLVTGSGQFRARLTQVALLA
JGI12630J15595_101186882	3300001545	Forest Soil	MPGSVTSVFSEPDDFEAALREDGVLGMLITGRGRFRARLTQITLHR
JGIcombinedJ26739_1018198221	3300002245	Forest Soil	VPGSVTSVFSEANDFAAALRAEGCFGLLVTGPGAFRARLTQVVLHQLRLSAGEEHPPRI
JGI26340J50214_101703402	3300003368	Bog Forest Soil	MPGSVTSVFSEPGDFEAALREEGGLGLLITGRGRFRARLTQIALD
Ga0062384_1007279462	3300004082	Bog Forest Soil	MPGSVTSVFSEAEDFEAALREEGCLSLLVTGRGAFRARLTQIALHRLRL
Ga0062389_1017296661	3300004092	Bog Forest Soil	MPGSVTSVFSEAEDFEAALHKEGCLGLLVTGPGAFRARLTQIALHRLRLS
Ga0062386_1014350602	3300004152	Bog Forest Soil	MPGSVTSVFSEAEDFEAALREEGYLGLLVTGQGAFRARLTQI
Ga0062388_1011661921	3300004635	Bog Forest Soil	MPGSVASVFSEAEDFETALCREGCLGLLVTGRGAFRARLTQLALHRLNLAAGEE
Ga0070671_1004425233	3300005355	Switchgrass Rhizosphere	MPGCVTSTFSEPDDFAAALRQEGYLKLLITGRGQFQAQLMQIVLHRQRLSTAEEQLPRELPPEEWTPG*
Ga0066701_109542871	3300005552	Soil	VPRTFTSVFSEPDDFQAAVNEEGVVRFLVTGRGQFRARLTQIVLHRLRLSAG
Ga0066903_1024815081	3300005764	Tropical Forest Soil	MPGSSTSVFCEAEDFEAALREEGRLHLLVTGQGAFRARLTQI
Ga0066903_1089622182	3300005764	Tropical Forest Soil	MPGSIISAFSEAADFEAALREGGGIGLLVTGPGAFRARLTRITLLRLRLAAAEEHLPRILLV
Ga0075424_1016851652	3300006904	Populus Rhizosphere	MPGSVTSVFSEADEFEAALLGEGGLGLLVTGSGAFRARLTQ
Ga0066709_1031542851	3300009137	Grasslands Soil	VPRTFTSVFSEPDDFQAAVSEEGVVRFLVTGRGQFRARLTQIVLHRLRLSAGEE
Ga0126384_120739641	3300010046	Tropical Forest Soil	MPGSVTSVFSEAEDYEVALREEGCCGLLVTGSGEFSARLTQVALHRLRLSAAEEIWPG*
Ga0126373_113818501	3300010048	Tropical Forest Soil	LPGSVTSVFGGPDDFYAALPEDGVLSLLVTGNGPYRAR
Ga0126373_121012423	3300010048	Tropical Forest Soil	MPVSITSMFSDAEDFEAALGEEGCLNLLVTGVGLFQAQLTEIALH
Ga0074044_100457347	3300010343	Bog Forest Soil	MPGSVTSVFSEPEDFQNALREDGMLGTLITGRGRFQARLTQIMLHGLRLSAAEEHLSRIAFVTV
Ga0126376_124863711	3300010359	Tropical Forest Soil	MPGSATSVFSEAEDFEAALRGGGCLGLLITGLGKFRAR
Ga0126372_111464601	3300010360	Tropical Forest Soil	MPGSVTSVFGEAENFEAALREEGFTSLLVTEAGVFRSRLTQITLDRLRL
Ga0126379_134338851	3300010366	Tropical Forest Soil	MPGSVTSVFSEAQDFEAALRAEGGAGPLVTGRGAFRARLTQITLDRLRL
Ga0126381_1016793063	3300010376	Tropical Forest Soil	MPGNVISAFSEAADFEAAFRERGGVGLLVTGPGAFRARLTRIALLQL*
Ga0137363_101399451	3300012202	Vadose Zone Soil	MPSSVTSVFSEAEDFAAALRAEGCLSLLVTGAGQFRARLTQVALLGLRLSATDEH
Ga0182036_103138193	3300016270	Soil	MPGSVTSVFSELEDFAAALHEEGCLDLLVTGRGEFRARLTQV
Ga0182041_121698001	3300016294	Soil	LPGSVTSVFGEPDDFHAALRAAGVLNLLVTGNGPFRARLTQVALNHMRL
Ga0182034_102954413	3300016371	Soil	MPGSVTSVFSEPDDFQATLHEDGVFGMLVTGGSPFRARLTQIT
Ga0182034_108339111	3300016371	Soil	MPGSVTSVFSEAEDFAAALREEGFLSLLVTGNGEFRARLTRVSLHSLRLSAAEEHLSRT
Ga0182034_113241942	3300016371	Soil	MPGSVTSVFSELEDFAAALHEEGCLDLLVTGRGEFRARLTQVALHRLRLGAAEERLP
Ga0182039_113797461	3300016422	Soil	MPGSVTSAFSEAADFEAALREGGCLGLLLTGPGAFRARLTRIALLQLQLSAAEEHLPR
Ga0182038_102793894	3300016445	Soil	MPGSATSVYSEAEDFEAAIRAEGCLGLLVTGPGQFRARLTQVGLHRL
Ga0187766_108982722	3300018058	Tropical Peatland	MPGSATSVFSEAEDFEAALRAEGCLGLLVTGRGQFRARLTQVSLHRLRLSATDEQL
Ga0210403_101491864	3300020580	Soil	MPSSVTWVFSEAEDFAAALRAEGCLGLLVTGAGQFRARLTQVALHRLRLSAADENLPRIARVA
Ga0210399_112110101	3300020581	Soil	MPGSVTSVFGEPGDFEAALREEGCLGLLITGRGQFRARLTQVKLHRLRLSAAEEQLSR
Ga0210401_103049632	3300020583	Soil	MPGSVTSVFGEPEDFQAALREEGVLGMLITGRGRFRARLTQITLHRLRLSAAEEHLPWIVFVAV
Ga0210388_113934012	3300021181	Soil	MPGSVTSVFSEPGDFEAALREEGGLGLLITGRGQFRARLT
Ga0213872_101923252	3300021361	Rhizosphere	MPGSATSVFSDAEEFEAALRTEGCLGLLITGRGQFRARLTQVSLH
Ga0213881_104014801	3300021374	Exposed Rock	MPGSVTSAFSEAADFEAALREGGCLGLLVTGPGSFRARLTRIALLQLRLSAAEEHLPRI
Ga0210385_105163301	3300021402	Soil	MSGSVTSVFSEPDEFEGALRRDGYLRLLITGRGQFRARLTQIALHRLRLSGGDEQLSRIAVVT
Ga0210385_113008521	3300021402	Soil	MPGSVTSVFSEPGDFEAALRDEGGLGLLITGRGQFLARLTQVKLHRMRLSAAEEQLSRI
Ga0210389_102726002	3300021404	Soil	MRSSTTGVFREQDDFEAALREEGCVSLLVTDPGSFRARFTRIALHQLRL
Ga0210383_117471892	3300021407	Soil	MPDSVTSAFSDPEDFAAAFRTEGCVGLLITGRGQFQA
Ga0210391_103819521	3300021433	Soil	MPSSMTGAFDERADFETALRAGCRGLVVTGRGQFRAQLTVVTLHRLRLSAVEEQLSRIAF
Ga0213871_102363411	3300021441	Rhizosphere	MPGSVTSVFSEPDELQAALRAEGVINLLVPSPGEFRARLTQARLHRLRLSCGDEFRSRVA
Ga0210410_111282061	3300021479	Soil	MPGSVTSVFSEPGDFEAALREEGGLGLLITGRGQFRA
Ga0126371_102806671	3300021560	Tropical Forest Soil	MPGSVTSAFSEAEDFQAALRAEGCLCLLVTGAGPFKAQLTQIVLHHLRLLAGDEYLPRFALVA
Ga0126371_105913622	3300021560	Tropical Forest Soil	MPGSATSVYSEAEDFEAALRAQGCLGLLVTGPGQFRPRLTELGLHRLRLSARANVMAA
Ga0126371_119254551	3300021560	Tropical Forest Soil	MPGTATSVFSEAEGFEAALRAEGCLGLLVTGRGRFRARLTQVSLHRLRLSATDETLARIA
Ga0207644_113402222	3300025931	Switchgrass Rhizosphere	MPGCVTSTFSEPDDFAAALRQEGYLKLLITGRGQFQAQLMQIVLHRQRLSTAEEQLPRELPPEEWTPG
Ga0257160_10332771	3300026489	Soil	MPGSVTSVFSEPGDFEAALREEGGLGLLITGRGQF
Ga0208489_10073631	3300027065	Forest Soil	MPGSVTSVFSEPGDFEAALREEGGLGLLVTGRGQFRARLTQVKLHRMRLSAAEEQLSRIAFV
Ga0208859_10417742	3300027069	Forest Soil	MPGSVTSVFSEPSDFEAALREEGGLGLLITGRGQFLA
Ga0209626_11867151	3300027684	Forest Soil	MPGSVTSVFSEPGDFEAALREEGGLGLLITGRGQFLARLTQVKLHRMRLSAAEEQLSRIA
Ga0209139_100465593	3300027795	Bog Forest Soil	MPGSVASMFSEAEDFETALRQEGCLGLLVTGRGAFRARLTQVALHRLNLAAGEEQLARV
Ga0209139_102355311	3300027795	Bog Forest Soil	MPGSVTSVFSEAEDFEAALREEGCLSLLVTGRGAFRARLTQIA
Ga0209040_101721832	3300027824	Bog Forest Soil	MPGSVTSVFSEPGDFEAALREEGGLGLLITGRGRFRARLTQIALDHLRLSA
Ga0209040_102407861	3300027824	Bog Forest Soil	MPGSVTSVFSEPCDFEAALREEGGLGLLITGRGRFRARLTQIALDHLRLSA
Ga0209040_102857671	3300027824	Bog Forest Soil	MPGSVTSVFSEADEFEAALRKEGCLGLLIIGRGQFR
Ga0209773_101933821	3300027829	Bog Forest Soil	MPGSVTSMFSEPADFEAALRAEGGLGLLVTGRGEFRARLTQVALHRLRLSAAEEQL
Ga0209488_107762551	3300027903	Vadose Zone Soil	MPSSVTSVFSEAEDFAAAVRKEGCLALLVTGAGQFRARL
Ga0222749_106414051	3300029636	Soil	MPGSVTSVFSEADEFGAALLEEGYLGLLVTGPGAFRARLTQVAL
Ga0075394_119720711	3300030969	Soil	MPSSVTSVFSEAEDFAVAMREEGCLALLVTGAGQFRARLTQVALLGLRLSATDEQLPRIA
Ga0170834_1120793572	3300031057	Forest Soil	MPGSVTAMFSEPADFEAALREGGCLSLLILGRGQFWAQVTRVTLH
Ga0170824_1109562832	3300031231	Forest Soil	MPSSVTSVFSEAKDFAVAMREEGCLALLVTGSGRF
Ga0170824_1258155131	3300031231	Forest Soil	MPGSVTSVFSEAEDFAAALREEGGLGVLVTGAGEFRARLTRVALHNLRLSAGDEQ
Ga0170820_127479282	3300031446	Forest Soil	MPGSVTSVFSEPGDFEAALRQDGVLSMLITGRGQFRARL
Ga0318516_100472201	3300031543	Soil	MPGSVTAVFGEAEDFAAALRAEGVLSLLVTGAGEFRAR
Ga0318516_103052571	3300031543	Soil	MPVSITSMFSDAEDFEAALCEEGCLSLLVTGVGSFQAQLTEIALHRLWLSATDEHL
Ga0318516_103738182	3300031543	Soil	MPASITSMFSDAEDFEAALGEEGCLSLLVTGVGPFQAQLTEIALHRLRLSAMD
Ga0318534_102284182	3300031544	Soil	MPGSVTAVFGEAEDFAAALRAEGVLSLLVTGAGEFRAQLTQIALNQLRL
Ga0318538_101894891	3300031546	Soil	MPGSVTSVSSEAKDFAAALRGEGWLGLLVTGAGEFRARLTQVTLHHLRLT
Ga0318528_100357171	3300031561	Soil	MPGSVTSVFSEAQDFEAALRAEGGAGLLVTGRAASR
Ga0310915_103355871	3300031573	Soil	MPRSITSVFSEAEDFAVAMREEGCLSLLVTGADQFRARLTQIALHSLRLSATDERMPRIA
Ga0318542_107501872	3300031668	Soil	MPESVTSVFSEVENFEIALREEGFVGLLVTGTGEFRARLT
Ga0318561_100375954	3300031679	Soil	MPRSITSVFSEAEDFAVAIREEGCLSLLVTGADQFRARLTQIALHSL
Ga0318574_101364582	3300031680	Soil	MPGSVTSVFSEPEDFEAALREDGVVSMLITGPGRFRARLTRVTLHRL
Ga0318574_105932332	3300031680	Soil	MPASITSMFSDAEDFEAALGEEGCLSLLVTGVGPFQAQLTEIALHRLR
Ga0318560_100680314	3300031682	Soil	MPGSTTSVFSEAGDFGAALRDEGCLGLLVTGAGEFRA
Ga0310686_1194521002	3300031708	Soil	MSVFSEPDDFEAALGEEGCLGLLITGRGLFQARLTQIALHRL
Ga0318496_101164191	3300031713	Soil	MPGSVTSVFSQAEDFAAALSEEGVLGLLVTGTGEFRARLT
Ga0306917_110158131	3300031719	Soil	MPGSVTSVFSDAEDFAAALREEGFLSLLVTGNGEFRARLTRVSLHSL
Ga0306917_115892462	3300031719	Soil	MPGSVTSAFNEAKDFQAVLRAGGCLCLLVTGAGQFKARLTQIVLHRLR
Ga0318493_104514181	3300031723	Soil	MPRSITSVFSEAEDFAVAMREEGCLALLVTGAGQFRARLTQIGLHSLR
Ga0318502_106614582	3300031747	Soil	MPGSVVSVFSEAEDFEVALRAEGALRLLVTGPGRFKARLTQVALH
Ga0318494_101856491	3300031751	Soil	MPGSVTSVFSEAKDFAAALRGEGWLGLLVTGAGEFRARLTQVTLHHL
Ga0318535_102956601	3300031764	Soil	MPGSVTSVFSEAKDFAAALRGEGWLGLLVTGAGEFRARLTQVTLH
Ga0318509_108489292	3300031768	Soil	MPVSITSMFSDAEDFEAALCEEGCLSLLVTGVGSFQAQLTEIALHRLWLSATD
Ga0318521_100258994	3300031770	Soil	MPRSITSVFSEAEDFAVAMREEGCLSLLVTGADQFRARLTQI
Ga0318546_110127152	3300031771	Soil	MPRSITSVFSEAEDFAVAMREEGCLSLLVTGAGQFRARLTQVALQ
Ga0318546_111821482	3300031771	Soil	MPGSVTSVFSEAEDFAAALRPEGFLSLAVIGGGEFRARLTRVTLHSLRLSTKRKQHC
Ga0318547_104587341	3300031781	Soil	MPGSVTSVFSEAEDFAAALREEGFLSLLVTGNGEFRARLTRVSLHSLR
Ga0318547_105130792	3300031781	Soil	MPVSITSMFSDAEDFEAALGEEGCVSLLVTGVGLFQAQLTE
Ga0318548_101946501	3300031793	Soil	MPGSVISVFSEAESFEAALREEGYTRLFVTESGEFRAC
Ga0318548_103446502	3300031793	Soil	MPESVTSVFSEVENFEIALREEGFVGLLVTGTGEFRARLTRVALH
Ga0318548_105255422	3300031793	Soil	MPGSVTSVFSEAEDFAAALREEGFLSLLVTGNGEFRARLT
Ga0318557_103137871	3300031795	Soil	MPGSATSVYSEAEDFEAAIRAEGCLGLLVTGPGQFRARLTQVGLHRLRLSAPD
Ga0318497_106110462	3300031805	Soil	MPASVTSVFSEPDDFQAALRADGVLSLLVTGPGRFRARLTQVTLQDLYL
Ga0318567_107227521	3300031821	Soil	MPGSVISVFSEAESFEAALREEGYTRLFVTESGEFRACLT
Ga0306919_106436851	3300031879	Soil	MPGSVTSVFGEPEEFEAALRADGVLSLLVTGHGRFRARLTQITLHRLRLS
Ga0306925_101484321	3300031890	Soil	MPVSITSMFSDAEDFEAALGEEGCVSLLVTGVGLFQAQLTEIALHRLWLSA
Ga0318536_100447434	3300031893	Soil	MPRSITSVFSEAEDFAVAMREEGCLSLLVTGAGQFRARLTQVAL
Ga0318520_109692511	3300031897	Soil	MPGSVTSVFSDAEDFAAALREEGFLSLLVTGNGEFRARLTRVSLHSLRLSAAE
Ga0306921_103554683	3300031912	Soil	VTMPRSITSVFSEAEDFAVAMREEGCLALLVTGAGQFRARLTQI
Ga0306921_105166151	3300031912	Soil	MPGSVTAVFGEAEDFAAALRAEGVLSLLVTGAGEFRAQLTQIALNQ
Ga0310912_111282111	3300031941	Soil	MPGSVTSVFSEAEDFAAALRPEGFLSLAVIGGGEFRARLTRVTLHSLRLSAAE
Ga0310916_102464833	3300031942	Soil	MPASITSMFSDAEDFEAALGEEGCLSLLVTGVGPFQAQLTEIALHRLRLSATDEHLPRIT
Ga0310913_110594812	3300031945	Soil	MPGSATSVYSEAEDFEAAIRAEGCLGLLVTGPGQFRARLTQVGLHRLRLSATDEPL
Ga0310909_107991302	3300031947	Soil	MPGSVTSVFSDAEDFAAALREEGFLSLLVTGNGEFRARLTRVSLHSLW
Ga0306926_114094431	3300031954	Soil	MPGSVTSGFSEAANFAAALRAEGVLSLLVTGSGEFRARLTQIDLHNLRLSTADEQLPRV
Ga0318531_104938542	3300031981	Soil	MPGSVTSVFSELEDFAAALHEEGCLDLLVTGRGEFRARLTQVALH
Ga0306922_101978021	3300032001	Soil	MPGSATSVYSEAEDFEAAIRAEGCLGLLVTGPGQFRARLTQVGLHRLRLSA
Ga0306922_108844382	3300032001	Soil	MPGSVTSVFGEPGDFEAALRGDGVLSLLVTAQGQFRARLTQ
Ga0318507_100446363	3300032025	Soil	MPVSITSMFSDAEDFEAALDEEGCLSLLVTGVGPFQA
Ga0310911_103457331	3300032035	Soil	MPRSITSVFSEAEDFAVAMREEGCLSLLVTGADQFRARLTQIALHSLRLSATDERMPRIAFV
Ga0318549_105339011	3300032041	Soil	MPGSVTSVFSEPEDFEAAPREDGVVSMLITGPGRFRARLT
Ga0318506_104555911	3300032052	Soil	MPGSVISVFSEAESFEAALREEGYTRLFVTESGEFRACLTQITLDRL
Ga0318575_100854632	3300032055	Soil	MPGSVTSVFSQAEDFAAALSEEGVLGLLVTGTGEFRARLTLVALHSLRLLAAEEHLS
Ga0318533_112920271	3300032059	Soil	MPGSIISAFSEAADFEAALREGGGIGLLVTGPGAFRARLTRITLLRLRLAAAEEH
Ga0318505_103452582	3300032060	Soil	MPGSVVSVFSEAEDFEVALRAEGALRLLVTGPGRFKARLTQVA
Ga0318510_100077121	3300032064	Soil	MPGSVTAVFGEAEDFAAALRAEGVLSLLVTGAGEFRAQLTQIALNQL
Ga0318514_100926982	3300032066	Soil	MPGSVTAVFGEAEDFAAALRAEGVLSLLVTGAGEFRAQLTQIALNQLRLSAAEERLPRIALV
Ga0318524_106494752	3300032067	Soil	MPGSVTSVFSDAEDFAAALREEGFLSLLVTGNGEFRA
Ga0318553_101046162	3300032068	Soil	MPGSVTSVFSQAEDFAAALSEEGVLGLLVTGTGEF
Ga0306924_105653923	3300032076	Soil	MPGSVTSVFSEAEDFAAALREEGFLSLLVTGNGEFRARLTRVS
Ga0306924_111334563	3300032076	Soil	MPRSITSVFSEAEDFAVAIREEGCLSLLVTGADQFRARLTQIALHSLRLSATDERMPRIA
Ga0306924_112016401	3300032076	Soil	MPESVTSVFSEVENFEIALREEGFVGLLGTGTGEFR
Ga0318540_101918202	3300032094	Soil	MPGTITSGFSEAEKFAAALRAEGVLSVLVTGTGEFRARLTQVALHQLRLSAAEEHLSR
Ga0318540_104002491	3300032094	Soil	MPASVASVFSNPEDLQAALNKDGVLSLLVTGSGRFRARLT
Ga0307471_1039441901	3300032180	Hardwood Forest Soil	MPGSVTSVFSEPGDFEAALREEGGLGLLITGRGQFRARLTQVKLHRLRLSAAEEQLSRI
Ga0335081_113541841	3300032892	Soil	MPGSVTSVFTEPEDFEAALRVQGCRVLVITEGGPFRARVTQIALRSLRVMAV
Ga0335077_114514682	3300033158	Soil	MPGSVTSTFSEPEDFEDALRKEGCRGLVITGRGRFRARLTQITLHRLRLSAAEEQLP
Ga0318519_103282102	3300033290	Soil	MPGSVSSVFGEPEDFAAALRADGVLSVLVTGHGPFRSRLTQVTLHGLC