Metagenome / Metatranscriptome Family F060264

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F060264
Family Type	Metagenome / Metatranscriptome
Number of Sequences	133
Average Sequence Length	65 residues
Representative Sequence	VMADIFNAFNSNAAVGATSNAGEPPAAINTTYGSAWLKPLNILQARYVKFGAQFTF
Number of Associated Samples	115
Number of Associated Scaffolds	133

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	3.05 %
% of genes near scaffold ends (potentially truncated)	93.98 %
% of genes from short scaffolds (< 2000 bps)	90.98 %
Associated GOLD sequencing projects	107
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.18

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (94.737 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (9.023 % of family members)
Environment Ontology (ENVO)	Unclassified (33.083 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (50.376 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 27.38% β-sheet: 0.00% Coil/Unstructured: 72.62%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.18
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.18
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 133 Family Scaffolds
PF00440	TetR_N	3.76
PF00144	Beta-lactamase	3.01
PF00069	Pkinase	3.01
PF00196	GerE	2.26
PF13432	TPR_16	1.50
PF14559	TPR_19	1.50
PF04264	YceI	1.50
PF00291	PALP	1.50
PF14759	Reductase_C	1.50
PF00561	Abhydrolase_1	0.75
PF07394	DUF1501	0.75
PF01464	SLT	0.75
PF00171	Aldedh	0.75
PF03422	CBM_6	0.75
PF00990	GGDEF	0.75
PF07676	PD40	0.75
PF08002	DUF1697	0.75
PF07995	GSDH	0.75
PF13414	TPR_11	0.75
PF14522	Cytochrome_C7	0.75
PF07969	Amidohydro_3	0.75
PF08308	PEGA	0.75
PF03886	ABC_trans_aux	0.75
PF00486	Trans_reg_C	0.75
PF04879	Molybdop_Fe4S4	0.75
PF01436	NHL	0.75
PF00188	CAP	0.75

COG ID	Name	Functional Category	% Frequency in 133 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	12.03
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	3.01
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	3.01
COG2367	Beta-lactamase class A	Defense mechanisms [V]	3.01
COG2353	Polyisoprenoid-binding periplasmic protein YceI	General function prediction only [R]	1.50
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	0.75
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	0.75
COG2133	Glucose/arabinose dehydrogenase, beta-propeller fold	Carbohydrate transport and metabolism [G]	0.75
COG2340	Spore germination protein YkwD and related proteins with CAP (CSP/antigen 5/PR1) domain	Cell cycle control, cell division, chromosome partitioning [D]	0.75
COG3797	Uncharacterized conserved protein, DUF1697 family	Function unknown [S]	0.75
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	0.75

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	94.74 %
Unclassified	root	N/A	5.26 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	94.74 %
Unclassified	root	N/A	5.26 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	94.74 %
Unclassified	root	N/A	5.26 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	73.68 %
Unclassified	root	N/A	5.26 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.01 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.75 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	26.32 %
Unclassified	root	N/A	5.26 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.50 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.50 %
Vicinamibacteria	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria	0.75 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.75 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.75 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	25.56 %
Unclassified	root	N/A	5.26 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	1.50 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	1.50 %
Vicinamibacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales	0.75 %
Acidobacteria bacterium 13_2_20CM_2_66_4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_2_66_4	0.75 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	0.75 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.75 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	25.56 %
Unclassified	root	N/A	5.26 %
unclassified Xanthomonadales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales	1.50 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.50 %
Vicinamibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae	0.75 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	0.75 %
Acidobacteria bacterium 13_2_20CM_2_66_4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_2_66_4	0.75 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.75 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	25.56 %
Unclassified	root	N/A	5.26 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1.50 %
Acidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	1.50 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	0.75 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	0.75 %
Acidobacteria bacterium 13_2_20CM_2_66_4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_2_66_4	0.75 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.75 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	25.56 %
Unclassified	root	N/A	5.26 %
unclassified Acidobacterium	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium	1.50 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1.50 %
Gemmatimonas	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas	0.75 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	0.75 %
Acidobacteria bacterium 13_2_20CM_2_66_4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_2_66_4	0.75 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.75 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	25.56 %
Unclassified	root	N/A	5.26 %
Acidobacterium sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	1.50 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1.50 %
unclassified Gemmatimonas	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → unclassified Gemmatimonas	0.75 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	0.75 %
Acidobacteria bacterium 13_2_20CM_2_66_4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_2_66_4	0.75 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.75 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	25.56 %
Unclassified	root	N/A	5.26 %
Acidobacterium sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	1.50 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1.50 %
Gemmatimonas sp.	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → unclassified Gemmatimonas → Gemmatimonas sp.	0.75 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	0.75 %
Acidobacteria bacterium 13_2_20CM_2_66_4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_2_66_4	0.75 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.75 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2067725004\|GPKC_F5V46DG04JGL6Z	All Organisms → cellular organisms → Bacteria → Acidobacteria	537	Open in IMG/M
2170459008\|GA8OVOZ02ITW2Z	All Organisms → cellular organisms → Bacteria → Acidobacteria	504	Open in IMG/M
3300002459\|JGI24751J29686_10018030	All Organisms → cellular organisms → Bacteria → Acidobacteria	1459	Open in IMG/M
3300002568\|C688J35102_120510172	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1130	Open in IMG/M
3300004779\|Ga0062380_10091440	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	1113	Open in IMG/M
3300004808\|Ga0062381_10128444	All Organisms → cellular organisms → Bacteria	822	Open in IMG/M
3300005093\|Ga0062594_102839648	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	539	Open in IMG/M
3300005173\|Ga0066822_1001663	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1014	Open in IMG/M
3300005176\|Ga0066679_10028527	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → unclassified Gemmatimonas → Gemmatimonas sp.	3050	Open in IMG/M
3300005178\|Ga0066688_10176239	All Organisms → cellular organisms → Bacteria → Acidobacteria	1349	Open in IMG/M
3300005179\|Ga0066684_10014026	All Organisms → cellular organisms → Bacteria	3991	Open in IMG/M
3300005179\|Ga0066684_10644264	All Organisms → cellular organisms → Bacteria → Acidobacteria	712	Open in IMG/M
3300005294\|Ga0065705_10746903	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	632	Open in IMG/M
3300005330\|Ga0070690_101574143	All Organisms → cellular organisms → Bacteria → Acidobacteria	532	Open in IMG/M
3300005332\|Ga0066388_105406921	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	647	Open in IMG/M
3300005332\|Ga0066388_105535479	All Organisms → cellular organisms → Bacteria → Acidobacteria	640	Open in IMG/M
3300005367\|Ga0070667_101661138	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	601	Open in IMG/M
3300005438\|Ga0070701_10235985	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1097	Open in IMG/M
3300005445\|Ga0070708_100019910	All Organisms → cellular organisms → Bacteria	5648	Open in IMG/M
3300005466\|Ga0070685_10350420	All Organisms → cellular organisms → Bacteria	1009	Open in IMG/M
3300005518\|Ga0070699_100852496	All Organisms → cellular organisms → Bacteria → Acidobacteria	834	Open in IMG/M
3300005536\|Ga0070697_100461909	All Organisms → cellular organisms → Bacteria → Acidobacteria	1107	Open in IMG/M
3300005544\|Ga0070686_101308158	All Organisms → cellular organisms → Bacteria → Acidobacteria	606	Open in IMG/M
3300005549\|Ga0070704_100047210	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3009	Open in IMG/M
3300005552\|Ga0066701_10208177	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1201	Open in IMG/M
3300005553\|Ga0066695_10875763	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	514	Open in IMG/M
3300005561\|Ga0066699_10077670	All Organisms → cellular organisms → Bacteria	2133	Open in IMG/M
3300005577\|Ga0068857_100178180	All Organisms → cellular organisms → Bacteria	1934	Open in IMG/M
3300005843\|Ga0068860_101417438	All Organisms → cellular organisms → Bacteria	716	Open in IMG/M
3300005844\|Ga0068862_100668022	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1004	Open in IMG/M
3300005844\|Ga0068862_101517818	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	676	Open in IMG/M
3300005844\|Ga0068862_101646159	All Organisms → cellular organisms → Bacteria → Acidobacteria	649	Open in IMG/M
3300006173\|Ga0070716_101224903	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	604	Open in IMG/M
3300006576\|Ga0074047_11811458	All Organisms → cellular organisms → Bacteria → Acidobacteria	538	Open in IMG/M
3300006845\|Ga0075421_101764380	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	667	Open in IMG/M
3300006852\|Ga0075433_10143705	All Organisms → cellular organisms → Bacteria	2121	Open in IMG/M
3300006854\|Ga0075425_103049739	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_2_66_4	511	Open in IMG/M
3300006871\|Ga0075434_100466039	All Organisms → cellular organisms → Bacteria → Acidobacteria	1285	Open in IMG/M
3300006881\|Ga0068865_100571089	All Organisms → cellular organisms → Bacteria	952	Open in IMG/M
3300006881\|Ga0068865_100600678	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	930	Open in IMG/M
3300006904\|Ga0075424_102219498	All Organisms → cellular organisms → Bacteria → Acidobacteria	578	Open in IMG/M
3300006969\|Ga0075419_11278576	All Organisms → cellular organisms → Bacteria → Acidobacteria	544	Open in IMG/M
3300009137\|Ga0066709_103011449	All Organisms → cellular organisms → Bacteria → Acidobacteria	618	Open in IMG/M
3300009143\|Ga0099792_10304476	All Organisms → cellular organisms → Bacteria → Acidobacteria	947	Open in IMG/M
3300009143\|Ga0099792_10975458	All Organisms → cellular organisms → Bacteria → Acidobacteria	565	Open in IMG/M
3300009147\|Ga0114129_10066635	All Organisms → cellular organisms → Bacteria	5022	Open in IMG/M
3300009148\|Ga0105243_13038440	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300009162\|Ga0075423_11183487	All Organisms → cellular organisms → Bacteria	815	Open in IMG/M
3300009162\|Ga0075423_11301858	All Organisms → cellular organisms → Bacteria → Acidobacteria	777	Open in IMG/M
3300009176\|Ga0105242_12747708	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	542	Open in IMG/M
3300009177\|Ga0105248_11513431	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	760	Open in IMG/M
3300009177\|Ga0105248_12339053	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	608	Open in IMG/M
3300009551\|Ga0105238_10581243	All Organisms → cellular organisms → Bacteria → Acidobacteria	1127	Open in IMG/M
3300009551\|Ga0105238_11845664	All Organisms → cellular organisms → Bacteria → Acidobacteria	637	Open in IMG/M
3300009553\|Ga0105249_11379262	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	777	Open in IMG/M
3300009553\|Ga0105249_12463146	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	593	Open in IMG/M
3300009609\|Ga0105347_1515531	All Organisms → cellular organisms → Bacteria → Acidobacteria	520	Open in IMG/M
3300010301\|Ga0134070_10230361	All Organisms → cellular organisms → Bacteria → Acidobacteria	688	Open in IMG/M
3300010329\|Ga0134111_10234631	All Organisms → cellular organisms → Bacteria → Acidobacteria	749	Open in IMG/M
3300010375\|Ga0105239_12356486	All Organisms → cellular organisms → Bacteria → Acidobacteria	620	Open in IMG/M
3300010398\|Ga0126383_13515753	All Organisms → cellular organisms → Bacteria → Acidobacteria	512	Open in IMG/M
3300010400\|Ga0134122_10456042	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	1145	Open in IMG/M
3300010400\|Ga0134122_11402179	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	713	Open in IMG/M
3300011119\|Ga0105246_11555345	All Organisms → cellular organisms → Bacteria → Acidobacteria	623	Open in IMG/M
3300011443\|Ga0137457_1319839	All Organisms → cellular organisms → Bacteria → Acidobacteria	529	Open in IMG/M
3300012212\|Ga0150985_105587022	All Organisms → cellular organisms → Bacteria → Acidobacteria	725	Open in IMG/M
3300012350\|Ga0137372_10675194	All Organisms → cellular organisms → Bacteria	750	Open in IMG/M
3300012356\|Ga0137371_10945076	Not Available	655	Open in IMG/M
3300012469\|Ga0150984_105165873	All Organisms → cellular organisms → Bacteria → Acidobacteria	734	Open in IMG/M
3300012469\|Ga0150984_111021114	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	551	Open in IMG/M
3300012944\|Ga0137410_11855652	All Organisms → cellular organisms → Bacteria → Acidobacteria	533	Open in IMG/M
3300012948\|Ga0126375_10591987	All Organisms → cellular organisms → Bacteria → Acidobacteria	845	Open in IMG/M
3300012955\|Ga0164298_10257434	All Organisms → cellular organisms → Bacteria → Acidobacteria	1056	Open in IMG/M
3300013308\|Ga0157375_12760617	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	587	Open in IMG/M
3300014166\|Ga0134079_10476944	All Organisms → cellular organisms → Bacteria → Acidobacteria	597	Open in IMG/M
3300014326\|Ga0157380_10480048	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1202	Open in IMG/M
3300014969\|Ga0157376_10890654	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	907	Open in IMG/M
3300015052\|Ga0137411_1093167	All Organisms → cellular organisms → Bacteria → Acidobacteria	1458	Open in IMG/M
3300015077\|Ga0173483_10277622	Not Available	810	Open in IMG/M
3300015200\|Ga0173480_10354901	All Organisms → cellular organisms → Bacteria → Acidobacteria	837	Open in IMG/M
3300015241\|Ga0137418_10563447	All Organisms → cellular organisms → Bacteria → Acidobacteria	900	Open in IMG/M
3300015372\|Ga0132256_100853156	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1027	Open in IMG/M
3300015372\|Ga0132256_102493503	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	619	Open in IMG/M
3300015374\|Ga0132255_100669978	All Organisms → cellular organisms → Bacteria	1538	Open in IMG/M
3300016387\|Ga0182040_10712402	All Organisms → cellular organisms → Bacteria	821	Open in IMG/M
3300017789\|Ga0136617_10035203	All Organisms → cellular organisms → Bacteria	4453	Open in IMG/M
3300018060\|Ga0187765_10210560	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1128	Open in IMG/M
3300018063\|Ga0184637_10693161	All Organisms → cellular organisms → Bacteria → Acidobacteria	558	Open in IMG/M
3300018072\|Ga0184635_10030772	All Organisms → cellular organisms → Bacteria	2014	Open in IMG/M
3300018433\|Ga0066667_10399633	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1110	Open in IMG/M
3300018433\|Ga0066667_11313876	All Organisms → cellular organisms → Bacteria → Acidobacteria	632	Open in IMG/M
3300018468\|Ga0066662_10940857	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	851	Open in IMG/M
3300018469\|Ga0190270_12967064	All Organisms → cellular organisms → Bacteria → Acidobacteria	536	Open in IMG/M
3300018476\|Ga0190274_10200920	All Organisms → cellular organisms → Bacteria → Acidobacteria	1752	Open in IMG/M
3300018482\|Ga0066669_10146821	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1729	Open in IMG/M
3300019356\|Ga0173481_10843974	All Organisms → cellular organisms → Bacteria → Acidobacteria	511	Open in IMG/M
3300020006\|Ga0193735_1160917	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	572	Open in IMG/M
3300020186\|Ga0163153_10110790	All Organisms → cellular organisms → Bacteria → Acidobacteria	1601	Open in IMG/M
3300021080\|Ga0210382_10334868	All Organisms → cellular organisms → Bacteria → Acidobacteria	667	Open in IMG/M
3300021080\|Ga0210382_10513954	All Organisms → cellular organisms → Bacteria → Acidobacteria	530	Open in IMG/M
3300021178\|Ga0210408_10361951	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1156	Open in IMG/M
3300022756\|Ga0222622_11253713	All Organisms → cellular organisms → Bacteria → Acidobacteria	546	Open in IMG/M
3300025937\|Ga0207669_11623220	All Organisms → cellular organisms → Bacteria → Acidobacteria	552	Open in IMG/M
3300025938\|Ga0207704_10469356	All Organisms → cellular organisms → Bacteria	1008	Open in IMG/M
3300025939\|Ga0207665_10524705	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	917	Open in IMG/M
3300026035\|Ga0207703_12087764	All Organisms → cellular organisms → Bacteria → Acidobacteria	543	Open in IMG/M
3300026088\|Ga0207641_10595780	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1081	Open in IMG/M
3300026089\|Ga0207648_12020318	All Organisms → cellular organisms → Bacteria → Acidobacteria	538	Open in IMG/M
3300026116\|Ga0207674_10192453	All Organisms → cellular organisms → Bacteria	1990	Open in IMG/M
3300026323\|Ga0209472_1155413	All Organisms → cellular organisms → Bacteria → Acidobacteria	849	Open in IMG/M
3300026529\|Ga0209806_1025075	Not Available	3019	Open in IMG/M
3300027778\|Ga0209464_10263104	All Organisms → cellular organisms → Bacteria → Acidobacteria	624	Open in IMG/M
3300027831\|Ga0209797_10123959	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	1120	Open in IMG/M
3300027873\|Ga0209814_10206835	All Organisms → cellular organisms → Bacteria	848	Open in IMG/M
3300027903\|Ga0209488_11153697	All Organisms → cellular organisms → Bacteria → Acidobacteria	525	Open in IMG/M
(restricted) 3300028043\|Ga0233417_10123242	All Organisms → cellular organisms → Bacteria → Acidobacteria	1105	Open in IMG/M
3300028381\|Ga0268264_10246198	All Organisms → cellular organisms → Bacteria → Acidobacteria	1658	Open in IMG/M
3300028715\|Ga0307313_10277529	All Organisms → cellular organisms → Bacteria → Acidobacteria	521	Open in IMG/M
3300028802\|Ga0307503_10887894	All Organisms → cellular organisms → Bacteria → Acidobacteria	515	Open in IMG/M
3300028824\|Ga0307310_10057711	All Organisms → cellular organisms → Bacteria → Acidobacteria	1637	Open in IMG/M
3300031716\|Ga0310813_10244262	All Organisms → cellular organisms → Bacteria → Proteobacteria	1492	Open in IMG/M
3300031723\|Ga0318493_10251052	All Organisms → cellular organisms → Bacteria	945	Open in IMG/M
3300031793\|Ga0318548_10598549	All Organisms → cellular organisms → Bacteria → Acidobacteria	536	Open in IMG/M
3300031793\|Ga0318548_10654313	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	510	Open in IMG/M
3300031858\|Ga0310892_10076048	All Organisms → cellular organisms → Bacteria → Acidobacteria	1761	Open in IMG/M
3300031896\|Ga0318551_10342953	All Organisms → cellular organisms → Bacteria	845	Open in IMG/M
3300032052\|Ga0318506_10190588	All Organisms → cellular organisms → Bacteria	904	Open in IMG/M
3300032163\|Ga0315281_11549562	Not Available	648	Open in IMG/M
3300032163\|Ga0315281_12157261	All Organisms → cellular organisms → Bacteria → Acidobacteria	528	Open in IMG/M
3300034115\|Ga0364945_0177300	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	645	Open in IMG/M
3300034354\|Ga0364943_0159519	Not Available	816	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	66.17%
Host-Associated	Host-Associated	33.83%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	54.14%
Plants	Host-Associated → Plants	33.83%
Aquatic	Environmental → Aquatic	12.03%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	52.63%
Rhizosphere	Host-Associated → Plants → Rhizosphere	21.80%
Rhizoplane	Host-Associated → Plants → Rhizoplane	12.03%
Freshwater	Environmental → Aquatic → Freshwater	8.27%
Sediment	Environmental → Aquatic → Sediment	3.76%
Floodplain	Environmental → Terrestrial → Floodplain	1.50%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	42.11%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	17.29%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	10.53%
Loam	Environmental → Terrestrial → Soil → Loam	9.77%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.51%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.76%
Lake	Environmental → Aquatic → Freshwater → Lake	3.01%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.01%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.50%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	1.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.50%
Ice	Environmental → Aquatic → Freshwater → Ice	0.75%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	17.29%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	12.03%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	10.53%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.52%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.26%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.51%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.76%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	3.01%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	2.26%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.50%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.50%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	1.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.50%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	0.75%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.75%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.75%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.75%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.75%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.75%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.02%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.52%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	7.52%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.02%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.26%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	5.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.51%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.76%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	3.01%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.01%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	3.01%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	2.26%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.26%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.26%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.26%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.26%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.26%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.50%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.50%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.50%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.50%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.50%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	1.50%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.50%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.50%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.50%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.50%
Freshwater Microbial Mat	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Microbial Mat	0.75%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	0.75%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.75%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.75%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.75%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.75%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.75%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.75%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.75%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.75%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.75%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.75%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2067725004	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
2170459008	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect DNA Tissue lysis 0-10cm	Environmental	Open in IMG/M
3300002459	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6	Host-Associated	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004779	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare3Fresh	Environmental	Open in IMG/M
3300004808	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare1Fresh	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005173	Soil and rhizosphere microbial communities from Laval, Canada - mgHMA	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006576	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009609	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890	Environmental	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300011443	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT630_2	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015052	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300017789	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ322 (21.06)	Environmental	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300020006	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m2	Environmental	Open in IMG/M
3300020186	Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.MP6.IB-1	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)	Environmental	Open in IMG/M
3300026529	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)	Environmental	Open in IMG/M
3300027778	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare1Fresh (SPAdes)	Environmental	Open in IMG/M
3300027831	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare3Fresh (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028043 (restricted)	Sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Sediment_Towuti_2014_0.5_MG	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028715	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032163	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_0	Environmental	Open in IMG/M
3300034115	Sediment microbial communities from East River floodplain, Colorado, United States - 29_s17	Environmental	Open in IMG/M
3300034354	Sediment microbial communities from East River floodplain, Colorado, United States - 23_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
GPKC_07754290	2067725004	Soil	LMADIFNALNSNAAVGATSNAGEPPAAINTTYGSAWLKPLNILQARYVKFGAQLAF
F48_00789170	2170459008	Grass Soil	MADIFNAFNSNAAVGATSNAGEPPAAINTTYGSAWLKPLNILQARYVKIGAQLTF
JGI24751J29686_100180302	3300002459	Corn, Switchgrass And Miscanthus Rhizosphere	LRVSKSFTLAGSRKLQVMADLFNALNSNAAVGATSNAGEPPAAINTTYSTNAATSAWLKPLNILQARYVKFGAQLTF*
C688J35102_1205101722	3300002568	Soil	LFNALNSNAAVGATSNAGEPPAAINTTYSTNAATSAWLKPLNILQARYVKFGAQLTF*
Ga0062380_100914402	3300004779	Wetland Sediment	RLKGDRKFQIMADVFNLTNSNASVGATSNAGEPPASLITTYGSAWLRPLNVLQARYIKFGAQLTF*
Ga0062381_101284442	3300004808	Wetland Sediment	MRVSKTFRLKGDRKFQIMADVFNLTNSNASVGATSNAGEPPASLITTYGSAWLRPLNVLQARYIKFGAQLTF*
Ga0062594_1028396482	3300005093	Soil	RLQVMADIFNLTNSNAAVGATSNAGEPPSALNTTYSPTTTAWLKPLNILQARYVKFGAQLQF*
Ga0066822_10016631	3300005173	Soil	VSKSFKLSSGSQRLQVMADIFNAFNSNAAVGATSNAGEPPAAINTTYSPTTTTWLRPLNILQARYVKFGAQFTF*
Ga0066679_100285273	3300005176	Soil	VDVRISKAIRLQGSRRLQAMVDIFNAFNSNAAVGATSQAGEPPPAINTTYSPTSAEWLKPFNILQGRYLKIGAQLTF*
Ga0066688_101762393	3300005178	Soil	QGSRRLQAMVDIFNAFNSNAAVGATSQAGEPPPAINTTYSPTSAEWLKPFNILQGRYLKIGAQLTF*
Ga0066684_100140261	3300005179	Soil	FNSNAAVGATSQAGEPPPAINTTYSPTSAEWLKPFNILQGRYVKIGAQLTF*
Ga0066684_106442642	3300005179	Soil	SRRLQVMADIFNALNSNAAVGATSNAGEPPAAINTTYGGAWLKPLNILQARYVKLGIQITF*
Ga0065705_107469032	3300005294	Switchgrass Rhizosphere	QVMVDLFNAFNSNAAVGATSNAGEPPAAINTTFSTAANSAWLKPLNILQARYFKVGAQLTF*
Ga0070690_1015741431	3300005330	Switchgrass Rhizosphere	FSKSFRLSGTQRLQVMADLFNAFNSNAAVGATSNAGEPPAAINTTYGSAWLKPLNILQARYVKFGAQFNF*
Ga0066388_1054069212	3300005332	Tropical Forest Soil	IFNAFNSNAAVGATSNAGEPPAAINTTFTTAANSAWLKPLNILQARYFKVGAQLTF*
Ga0066388_1055354792	3300005332	Tropical Forest Soil	LAKNFKLGGSRRLQAMADIFNALNSNAAVGATSNAGEPPPAINTTYSPPGTANASQWLKPLNILQARYIKFGVQFNF*
Ga0070667_1016611382	3300005367	Switchgrass Rhizosphere	LDLRVSKSFTLAGSRKLQVMADLFNALNSNAAVGATSNAGEPPAAINTTYSTNAATSAWLKPLNILQARYVKFGAQLTF*
Ga0070701_102359852	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	QVMADIFNAFNSNAAVGATSNAGEPPAAINTTYGSAWLRPLNILQARYVKFGAQILF*
Ga0070708_1000199101	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	LQAMVDIFNAFNSNAAVGATSQAGEPPPAINTTYSPTSAEWLKPFNILQGRYVKVGAQLTF*
Ga0070685_103504201	3300005466	Switchgrass Rhizosphere	DLRFSKSFRLSGTQRLQVMADLFNAFNSNAAVGATSNAGEPPAAINTTYGSAWLKPLNILQARYVKFGAQFNF*
Ga0070699_1008524962	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	FNSNAAVGATSQAGEPPPAINTTYSPTSTEWLKPFNILQGRYMKLGAQISF*
Ga0070697_1004619093	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	FNVLNSNAAVGATSNAGEPPAAINTTYGSAWLKPLNILQARYVKLGAQLTF*
Ga0070686_1013081582	3300005544	Switchgrass Rhizosphere	RTQLDVRVSKSFTMAGSRKVQVMMDLFNALNSNAAVGATSNAGEPPAAINTTYSPTTTTWLRPLNILQARYVKFGAQLTF*
Ga0070704_1000472107	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	QVMADIFNAFNSNAAVGATSNAGEPPAAINTTFGSAWLRPLNILQARYVKFGAQFQF*
Ga0066701_102081771	3300005552	Soil	KNFRLHGSQKLQVMADVFNAFNSNAAVGATSNAGEPPAAINTTYGSAWLKPLNILQARYVKFGAQITF*
Ga0066695_108757631	3300005553	Soil	NAFNSNAAVGATSNAGEPPAAINTTYSTAANSAWLKPLNILQARYFKVGAQLTF*
Ga0066699_100776701	3300005561	Soil	QVMADIFNALNSNAAVGATSNAGEPPAAINTTYGGAWLKPLNILQARYVKFGAQLTF*
Ga0068857_1001781801	3300005577	Corn Rhizosphere	VQAMADIFNALNSNAAVGATSNAGEPPPAIITTYSPPGTANASQWLKPLNILQARYIKFGVQFNF*
Ga0068860_1014174382	3300005843	Switchgrass Rhizosphere	MYTPRRTQLDLRVSKNINLRGAQRLQIMADIFNALNSNAAVGATSNAGEPPAAINTTFGSAWLRPLNILQARYVKFGAQLLF*
Ga0068862_1006680222	3300005844	Switchgrass Rhizosphere	GRRIQVMADIFNAFNSNAAVGATSNAGEPPAAINTTYGSAWLRPLNILQARYVKFGAQILF*
Ga0068862_1015178182	3300005844	Switchgrass Rhizosphere	LAGSRKLQVMADLFNALNSNAAVGATSNAGEPPAAINTTYSTNAATSAWLKPLNILQARYVKFGAQLTF*
Ga0068862_1016461592	3300005844	Switchgrass Rhizosphere	SKSWRIATTRKIQVMADIFNLTNSNASVGATSNAGEPPAALITTYGSAWLRPLNVLQARYMKFGAQLTF*
Ga0070716_1012249031	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	NSNAAVGATSNAGEPPAAINTTYSTNAATSAWLKPLNILQARYVKFGAQLTF*
Ga0074047_118114582	3300006576	Soil	MADIFNAFNSNAAVGATSNAGEPPAAINTTYSPTTTTWLRPLNILQARYVKFGAQFTF*
Ga0075421_1017643802	3300006845	Populus Rhizosphere	LQVMADIFNLTNSNAAVGATSNAGEPPAALITTYGAAWLRPLNVLQARYMKFGAQLVF*
Ga0075433_101437052	3300006852	Populus Rhizosphere	MFPIVVKLMADAFNAFNSTAAVGATSHTGEPPTAIDTTYGSAWLKPLKVLQARYVKIGTQLTF*
Ga0075425_1030497392	3300006854	Populus Rhizosphere	RLSKGIKMAGSKRLQVMADIFNLTNSNAAVGATSNAGEPPSALNTTYSPTTTAWLKPLNILQARYVKFGAQLLF*
Ga0075434_1004660393	3300006871	Populus Rhizosphere	YTPRRTQLDLRVGKNFTVAGSKKVQVMADIFNVTNSNAAVGATSNAGEPPAAINTTYGSAWLKPLNILQARYVKFGAQIQF*
Ga0068865_1005710891	3300006881	Miscanthus Rhizosphere	RLQVMADLFNAFNSNAAVGATSNAGEPPAAINTTYGSAWLKPLNILQARYVKFGAQFNF*
Ga0068865_1006006781	3300006881	Miscanthus Rhizosphere	DIFNAFNSNAAVGATSNAGEPPAAINTTFTTAANSAWLKPLNILQARYFKVGAQLTF*
Ga0075424_1022194982	3300006904	Populus Rhizosphere	VDLRLGKNFKLNNTQKIQVMVDLFNAFNSNAAVGATSNAGEPPAAINTTYSTAANSAWLKPLNILQARYFKVGAQITF*
Ga0075419_112785761	3300006969	Populus Rhizosphere	KSFRLSGNRRVQIMADIFNLTNSNAAVGATSNAGEPPAALITTFGSAWLRPLNVLQARYAKFGAQLNF*
Ga0066709_1030114492	3300009137	Grasslands Soil	QVDLRFGKNFRLSGSQKVQVMMDLFNAFNSNAAVGATSNAGEPPAAINTTYSAAAGSAWLKPLNILQARYVKFGAQFTF*
Ga0099792_103044762	3300009143	Vadose Zone Soil	AFNSNAAVGATSNAGEPPAAINTTFGNAWLKPLNVLQARYVKIGAQITF*
Ga0099792_109754582	3300009143	Vadose Zone Soil	KNFTVSGSRKLQVMADLFNAFNSNAAVGATSNAGEPPAAINTTYSTNAATSAWLKPLNILQARYVKFGAQLTF*
Ga0114129_100666354	3300009147	Populus Rhizosphere	MFPIVVKLMADAFNAFNSSAAVGATSHTGEPPTAIDTTYGSAWLKPLKVLQARYVKIGTQLTF*
Ga0105243_130384402	3300009148	Miscanthus Rhizosphere	FNSNAAVGATSNAGEPPAAINTTYGSAWLKPLNILQARYVKFGAQFNF*
Ga0075423_111834872	3300009162	Populus Rhizosphere	MFPIVVKLMADAFNAFNSTAAVGATSHTGEPPTTIDTTYGPAWLKPLKVLQARYVKIGTQLTF*
Ga0075423_113018582	3300009162	Populus Rhizosphere	AFRLRGSRRLQTMMDIFNAFNSNAAVGATSQAGEPPPAINTTYSPTSTEWLKPFNILQGRYLKLGAQLSF*
Ga0105242_127477081	3300009176	Miscanthus Rhizosphere	NAFNSNAAVGATSNAGEPPAAINTTFGSAWLRPLNILQARYVKFGAQLRF*
Ga0105248_115134311	3300009177	Switchgrass Rhizosphere	KSFTVAGSPKKQVMADLFNALNSNAAVGATSNAGEPPAAINTTYSTNAATSAWLKPLNILQARYIKFGAQLTF*
Ga0105248_123390532	3300009177	Switchgrass Rhizosphere	SKNFSLSGARRIQVMADIFNAFNSNAAVGATSNAGEPPAAINTTYGSAWLRPLNILQARYVKFGAQLMF*
Ga0105238_105812431	3300009551	Corn Rhizosphere	KNFSLSGARRIQVMADIFNAFNSNAAVGATSNAGEPPAAINTTYGSAWLKPLNILQARYVKIGAQLTF*
Ga0105238_118456642	3300009551	Corn Rhizosphere	DIFNALNSNAAVGATSNAGEPPPAIITTYSPPGTANASQWLKPLNILQARYIKFGVQFNF
Ga0105249_113792621	3300009553	Switchgrass Rhizosphere	LQVMADIFNLTNSNAAVGATSNAGEPPSALNTTYSPTTTAWLKPLNILQARYVKFGAQLQF*
Ga0105249_124631462	3300009553	Switchgrass Rhizosphere	LDLRVSKSFTMAGSRKLQVMMDLFNALNSNAAVGATSNAGEPPAAINTTYSPTTTTWLRPLNILQSRYVKFGAQLTF*
Ga0105347_15155311	3300009609	Soil	KRLQVMMDIYNTFNSNAPVGATSQAGEQPPALNTTYSAANPAKPGGAWLTPLNILQARYVKFGAQFNF*
Ga0134070_102303611	3300010301	Grasslands Soil	QKLQVMADVFNAFNSNAAVGATSNAGEPPAAINTTYGSAWLKPLNILQARYVKFGAQITF
Ga0134111_102346312	3300010329	Grasslands Soil	KNFRLRGSQKLQVMADVFNAFNSNAAVGATSNAGEPPAAINTTYGSAWLKPLNILQARYVKFGAQITF*
Ga0105239_123564862	3300010375	Corn Rhizosphere	FNVLNSNAAVGATSNAGEPPAAINTTYGSAWLKPLNILQARYVKFGAQLTF*
Ga0126383_124045722	3300010398	Tropical Forest Soil	FNSNASVGATSNAGEPPPAINVTYGPSWLKPLNILQARYVKFGAQLQF*
Ga0126383_135157531	3300010398	Tropical Forest Soil	RTQVDLRFAKNFKLGGNRRLQAMADIFNALNSNAAVGATSNAGEPPPAIITTYSPPGTANANQWLKPLNILQARYIKFGVQFNF*
Ga0134122_104560423	3300010400	Terrestrial Soil	GSRRVQVMADIFNAFNSNAAVGATSNAGEPPAAINTTYGPSWLKPLNILQARYVKFGAQLQF*
Ga0134122_114021791	3300010400	Terrestrial Soil	NFTLNGSRRIQVMADIFNAFNSNAAVGATSNAGEPPAAINTTFGSAWLKPLNILQARYVKFGAQLAF*
Ga0105246_115553451	3300011119	Miscanthus Rhizosphere	TMYTPRRSQIDLRVSKTVVLGGARKVQVMADIFNAFNSNAAVGATSNAGEPPAAINTTYSTNAATSAWLKPLNILQARYVKFGAQLTF*
Ga0137457_13198392	3300011443	Soil	ADIFNLTNSNASVGATSNAGEPPASLITTFGSAWLRPLNVLQARYMKLGVQVNF*
Ga0150985_1055870222	3300012212	Avena Fatua Rhizosphere	SKKVQVMADIFNVLNSNAAVGATSNAGEPPAAINTTYGSAWLKPLNILQARYVKLGAQLTF*
Ga0137372_106751942	3300012350	Vadose Zone Soil	NDARKVQVMLDIFNAFNSNAAVGATSNAGEPPAAINTTFSTAANSAWLKPLNILQARYVKLGAQFTF*
Ga0137371_109450762	3300012356	Vadose Zone Soil	FNAFNSNAAVGATSNAGEPPPAINATYGPSWLKPLNILQARYVKFGAQLQF*
Ga0150984_1051658731	3300012469	Avena Fatua Rhizosphere	KKVQVMADIFNVLNSNAAVGATSNAGEPPAAINTTYGSAWLKPLNILQARYVKLGAQLTF
Ga0150984_1110211141	3300012469	Avena Fatua Rhizosphere	KSFAMTPSRKLQVMADLFNALNSNAAVGATSNAGEPPAAINTTYSTNAATSAWLKPLNILQARYVKFGAQLTF*
Ga0137410_118556521	3300012944	Vadose Zone Soil	ITLAGSKKLQVMADIFNAFNSNAAVGATSNAGEPPAAINTTYGSAWLKPLNILQARYVKIGAQLTF*
Ga0126375_105919872	3300012948	Tropical Forest Soil	FSLARATKLQVMADIVNVLNSNAAVGATSNAGEPPAAINTTYGSAWLKPLNILQARYVKLGAQLTF*
Ga0164298_102574342	3300012955	Soil	DMFNALNSNAAVGATSNAGEPPPAIITTYSPPGTANASQWLKPLNILQARYIKFGVQFNF
Ga0157375_127606172	3300013308	Miscanthus Rhizosphere	QVMADIFNLTNSNAAVGATSNAGEPPSALITTYSPTTTAWLKPLNILQARYVKFGAQLQF
Ga0134079_104769441	3300014166	Grasslands Soil	MYTPRRTQLDLRVSKSFTLSGSSRLQVMADLFNAFNSNAAVGATSNAGEPPAAINTTYGTQWLKPLNILQA
Ga0157380_104800481	3300014326	Switchgrass Rhizosphere	RIQVMADIFNAFNSNAAVGATSNAGEPPAAINTTFGSAWLRPLNILQARYVKFGAQLAL*
Ga0157376_108906542	3300014969	Miscanthus Rhizosphere	MLDIFNAFNSNAAVGATSNAGEPPAAINTTFTTAANSAWLKPLNILQARYFKVGAQLTF*
Ga0137411_10931671	3300015052	Vadose Zone Soil	RAGRRSICESERTSSSADRRKKLQVMADIFNAFNSNAAVGATSNAGEPPAAINTTYGSAWLKPLNILQARYVKFGAQLTF*
Ga0173483_102776221	3300015077	Soil	DIFNAFNSNAAVGATSNAGEPPAALNTTYAPGSTAWLKPLNILQARYLKLGVQVTF*
Ga0173480_103549011	3300015200	Soil	LRASKTFAIGGSKRLQVMGDIFNAFNSNAAVGATSNAGEPPAALNTTYAPGSTAWLKPLNILQARYLKLGVQVTF*
Ga0137418_105634473	3300015241	Vadose Zone Soil	QVMLDIFNAFNSNAAVGATSNAGEPPAAINTTYGSAWLRPLNILQARYVKVGAQLTF*
Ga0132256_1008531561	3300015372	Arabidopsis Rhizosphere	PRRTQVDLRLGKNFKLNDTRKLQVMLDIFNAFNSNAAVGATSNAGEPPAAINTTFTTAANSAWLKPLNILQARYFKVGAQFTC*
Ga0132256_1024935031	3300015372	Arabidopsis Rhizosphere	FNAFNSNAAVGATSNAGEPPAAINTTFTTAANSAWLKPLNILQARYFKVGAQLTF*
Ga0132255_1006699781	3300015374	Arabidopsis Rhizosphere	LRVGKNFKLNETRKLQVMLDLFNAFNSNAAVGATSNAGEPPAAINTTFTTAANSAWLKPLNILQARYFKVGAQFTF*
Ga0182040_107124021	3300016387	Soil	VDFRFAKSVNLTGARRLQVMADLFNAFNSNAAVGATSNAGEPPAAINTTYGGAWLRPLNILQARYVKFGAQFQF
Ga0136617_100352031	3300017789	Polar Desert Sand	DVVNLTNSNASVGATSNAGEPPASLITTFGSAWLRPLNVLQARYVKFGAQLNF
Ga0190266_102841062	3300017965	Soil	VTNSNAAVGATSNAGEPPAALITTYGSAWLRPLNVLQARYMKFGAQFTF
Ga0187765_102105601	3300018060	Tropical Peatland	RRTQVDFRFAKNFQAGASRKLQVMADLFNAFNSNAAVGATSNAGEPPAAINVTYGPSWLKPLNILQARYVKFGAQLQF
Ga0184637_106931612	3300018063	Groundwater Sediment	IYNLTNSNASVGATSNAGEPPAAINTTYGPAWLNPRNILQARYVKFGAQFNF
Ga0184635_100307721	3300018072	Groundwater Sediment	VVAARRTQLDLRLSKSVKLAAAQKPQVMVDLFNAFNSNAAVGATSNAGEPPAAINTTFTTAANSAWLKPLNILQARYFKVGAQFTF
Ga0066667_103996331	3300018433	Grasslands Soil	QVDVRISKAIRLQGSRRLQAMVDIFNAFNSNAAVGATSQAGEPPPAINTTYSPTSAEWLKPFNILQGRYLKIGAQLTF
Ga0066667_113138762	3300018433	Grasslands Soil	LRGSQKLQVMADVFNAFNSNAAVGATSNAGEPPAAINTTYGSAWLKPLNILQARYVKFGAQITF
Ga0066662_109408571	3300018468	Grasslands Soil	KKVQVMADLFNAFNSNAAVGATSNAGEPPAAINTTYGTQWLKPLNILQARYVKIGAQLTF
Ga0190270_129670642	3300018469	Soil	KTFGIGDGKRMQLMADIFNLTNSNAAVGATSNAGEPPAALITTYGSAWLRPLNVLQARYMKFGVQLTF
Ga0190274_102009202	3300018476	Soil	NAFNSNAAVGATSNAGEPPAAINTTYGSAWLRPLNILQARYVKFGAQVLF
Ga0066669_101468211	3300018482	Grasslands Soil	DLFNAFNSNAAVGATSNAGEPPAAINTTYGTQWLKPLNILQARYVKIGAQLTF
Ga0173481_108439741	3300019356	Soil	MADIFNAFNSNAAVGATSNAGEPPAALNTTYAPGSTAWLKPLNILQARYLKLGVQVTF
Ga0193735_11609172	3300020006	Soil	IFNALNSNAAVGATSNAGEPPAAINTTYGSAWLKPLNILQARYVKFGAQLRF
Ga0163153_101107901	3300020186	Freshwater Microbial Mat	LQVMMDIYNTFNSNAPVGATSQAGEQPPALNTTYSTANPARLGGAWLTPLNILQARYVKFGAQFNF
Ga0210382_103348682	3300021080	Groundwater Sediment	LDLRVSKSLSLRGSRRLQLMADIFNALNSNAAVGATSNAGEPPAAINTTYGSAWLKPLNILQARYVKFGAQLAF
Ga0210382_105139541	3300021080	Groundwater Sediment	LDLRVSKSLSLRGSRRLQVMADIFNALNSNAAVGATSNAGEPPAAINTTYGGSAWLRPLNILQARYVKFGAQLAF
Ga0210408_103619511	3300021178	Soil	VMADIFNAFNSNAAVGATSNAGEPPAAINTTYGSAWLKPLNILQARYVKFGAQFTF
Ga0222622_112537131	3300022756	Groundwater Sediment	IKLSGTQKLQVMADIFNAFNSNAAVGATSNAGEPPAAINTTYGSAWLKPLNILQARYVKIGAQFMF
Ga0207669_116232202	3300025937	Miscanthus Rhizosphere	VSKTFRLSGAGSQRLQVMADIFNAFNSNAAVGATSNAGEPPAAINTTYSPTTTTWLRPLNILQARYVKFGAQLTF
Ga0207704_104693561	3300025938	Miscanthus Rhizosphere	LSGTKRLQVMADLFNAFNSNAAVGATSNAGEPPAAINTTYGSAWLKPLNILQARYVKFGAQFNF
Ga0207665_105247052	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	LDLRVSKSLVLAGSRKVQVMADLFNALNSNAAVGATSNAGEPPAAINTTYSTNAATSAWLKPLNILQARYVKFGAQLTF
Ga0207703_120877641	3300026035	Switchgrass Rhizosphere	LDLRLAKNFKLSGSQKLQVMADLFNVFNSNAAVGATSNAGEPPAAINTTFSSNPLTQQWLRPLNILQARYVKFGAQFTF
Ga0207641_105957802	3300026088	Switchgrass Rhizosphere	QVMADLFNALNSNAAVGATSNAGEPPAAINTTYSTNAATSAWLKPLNILQARYVKFGAQLTF
Ga0207648_120203181	3300026089	Miscanthus Rhizosphere	FSKSFRLSGTQRLQVMADLFNAFNSNAAVGATSNAGEPPAAINTTYGSAWLKPLNILQARYVKFGAQFNF
Ga0207674_101924531	3300026116	Corn Rhizosphere	TRRVQAMADIFNALNSNAAVGATSNAGEPPPAIITTYSPPGTANASQWLKPLNILQARYIKFGVQFNF
Ga0209472_11554131	3300026323	Soil	IASSRRLQVMADIFNALNSNAAVGATSNAGEPPAAINTTYGGAWLKPLNILQARYVKLGIQITF
Ga0209806_10250751	3300026529	Soil	QAMVDIFNAFNSNAAVGATSQAGEPPPAINTTYSPTSAEWLKPFNILQGRYVKIGAQLTF
Ga0209464_102631042	3300027778	Wetland Sediment	RRTQIDMRVSKTFRLKGDRKFQIMADVFNLTNSNASVGATSNAGEPPASLITTYGSAWLRPLNVLQARYIKFGAQLTF
Ga0209797_101239591	3300027831	Wetland Sediment	RLKGDRKFQIMADVFNLTNSNASVGATSNAGEPPASLITTYGSAWLRPLNVLQARYIKFGAQLTF
Ga0209814_102068354	3300027873	Populus Rhizosphere	FPIVVKLMADAFNAFNSTAAVGATSHTGEPPTAIDTTYGSAWLKPLKVLQARYVKIGTQLTF
Ga0209488_111536972	3300027903	Vadose Zone Soil	TVSGSRKLQVMADLFNAFNSNAAVGATSNAGEPPAAINTTYSTNAATSAWLKPLNILQARYVKFGAQLTF
(restricted) Ga0233417_101232423	3300028043	Sediment	LRLGGSKRLQLMADLFNAFNSNAAVGATSNAGEPPAAINTTYSPTTTTWLKPLNILQARYVKFGAQFNF
Ga0268264_102461982	3300028381	Switchgrass Rhizosphere	GTQRLQVMADLFNAFNSNAAVGATSNAGEPPAAINTTYGSAWLKPLNILQARYVKFGAQFNF
Ga0307313_102775292	3300028715	Soil	LDLRVSKSLNLRGSRRLQVMADIFNALNSNAAVGATSNAGEPPAAINTTYGSAWLKPLNILQARYVKFGAQLAF
Ga0307503_108878941	3300028802	Soil	GSKRLQVMGDIFNAFNSNAAVGATSNAGEPPAALNTTYAPGSTAWLKPLNILQARYLKLGVQVTF
Ga0307310_100577111	3300028824	Soil	QVMADIFNALNSNAAVGATSNAGEPPAAINTTYGSAWLKPLNILQARYVKFGAQLRF
Ga0310813_102442623	3300031716	Soil	LRFSKNFRLSGSQRFQVMADIFNLTNSNAAVGATSNAGEPPAAIITTYGSAWLKPLNILQARYVKFGAQIQF
Ga0318493_102510521	3300031723	Soil	FNAFNSNAAVGATSNAGEPPPAINVTYGPSWLKPLNILQARYVKFGAQLQF
Ga0318548_105985491	3300031793	Soil	EYTPRRTQVDFRFAKDITVRGARRLQVMADLFNAFNSNAAVGATSNAGEPPPAINVTYGPSWLKPLNILQARYVKFGAQLQF
Ga0318548_106543132	3300031793	Soil	LQVMADLFNAFNSNAAVGATSNAGEPPAAINTTYGGAWLRPLNILQARYVKFGAQFQF
Ga0310892_100760481	3300031858	Soil	MADVFNLTNSNAPVGATSNAGEPPAAIITTYGSAWLRPLNVLQARYVKFGAQLTF
Ga0318551_103429531	3300031896	Soil	VMADLFNAFNSNAAVGATSNAGEPPPAINVTYGPSWLKPLNILQARYVKFGAQLQF
Ga0318506_101905881	3300032052	Soil	VDFRFAKDITVRGARRLQVMADLFNAFNSNAAVGATSNAGEPPPAINVTYGPSWLKPLNILQARYVKFGAQLQF
Ga0315281_115495622	3300032163	Sediment	DLFNVFNSNASVGATSNAGEPPAAIITTYGSAWLKPLNILQARYVKFGMQLTF
Ga0315281_121572612	3300032163	Sediment	IKPGTMFTPRRTQLDLRASKSFAMAGARRVQVMVDIFNAFNSNAAVGATSNAGEPPAAINTTYSTNAATSAWLKPLNILQARYVKFGMQLTF
Ga0364945_0177300_19_276	3300034115	Sediment	MYTPRRTQLDLRLSKSFTMAGSRKVQVMMDLFNALNSNAAVGATSNAGEPPAAINTTYSPTTTTWLRPLNILQARYVKFGAQLTF
Ga0364943_0159519_645_812	3300034354	Sediment	MADIYNLFNSSATVGATSQSGEPPAALNQTYGNDWLRPFNILQARYVKFGASMQF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters