Metagenome / Metatranscriptome Family F060262

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F060262
Family Type	Metagenome / Metatranscriptome
Number of Sequences	133
Average Sequence Length	80 residues
Representative Sequence	MTQTDPRALVNLAREAEQRGDPTRSLQLYDDALTLLGDEQDLPLLADALRWKGTLHREQGETEIAYRCYKQSLMHAETC
Number of Associated Samples	115
Number of Associated Scaffolds	133

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	61.65 %
% of genes near scaffold ends (potentially truncated)	98.50 %
% of genes from short scaffolds (< 2000 bps)	93.23 %
Associated GOLD sequencing projects	112
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.79

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (99.248 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (39.098 % of family members)
Environment Ontology (ENVO)	Unclassified (36.090 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (32.331 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 60.75% β-sheet: 0.00% Coil/Unstructured: 39.25%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.79
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.79
Powered by PDBe Molstar

SCOP family	SCOP domain	Representative PDB	TM-score
a.118.8.9: TPR-like repeats from PCI (proteasome / COP9 signalosome / eIF3) domains	d3txna1	3txn	0.88228
a.118.8.1: Tetratricopeptide repeat (TPR)	d1ihga1	1ihg	0.88053
a.118.8.2: Transcription factor MalT domain III	d1hz4a_	1hz4	0.87437
a.118.8.1: Tetratricopeptide repeat (TPR)	d1qqea_	1qqe	0.8699
a.118.8.1: Tetratricopeptide repeat (TPR)	d1wm5a2	1wm5	0.86894

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 133 Family Scaffolds
PF00791	ZU5	10.53
PF13487	HD_5	9.02
PF13424	TPR_12	5.26
PF01966	HD	3.76
PF13176	TPR_7	3.01
PF07719	TPR_2	1.50
PF00515	TPR_1	1.50
PF08241	Methyltransf_11	0.75
PF13414	TPR_11	0.75
PF13181	TPR_8	0.75

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	99.25 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.75 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	92.48 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.75 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	0.75 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	92.48 %
Choanoflagellata	class	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Choanoflagellata	0.75 %
Armatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes	0.75 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	90.98 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	1.50 %
Craspedida	order	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Choanoflagellata → Craspedida	0.75 %
Chthonomonadetes	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Chthonomonadetes	0.75 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	90.98 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	1.50 %
Chthonomonadales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Chthonomonadetes → Chthonomonadales	0.75 %
Salpingoecidae	family	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Choanoflagellata → Craspedida → Salpingoecidae	0.75 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	90.98 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	1.50 %
Salpingoeca	genus	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Choanoflagellata → Craspedida → Salpingoecidae → Salpingoeca	0.75 %
Chthonomonadaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Chthonomonadetes → Chthonomonadales → Chthonomonadaceae	0.75 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	90.98 %
Gemmatirosa	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa	1.50 %
Chthonomonas	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Chthonomonadetes → Chthonomonadales → Chthonomonadaceae → Chthonomonas	0.75 %
Salpingoeca rosetta	species	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Choanoflagellata → Craspedida → Salpingoecidae → Salpingoeca → Salpingoeca rosetta	0.75 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	90.98 %
Gemmatirosa kalamazoonesis	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	1.50 %
Chthonomonas calidirosea	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Chthonomonadetes → Chthonomonadales → Chthonomonadaceae → Chthonomonas → Chthonomonas calidirosea	0.75 %
Salpingoeca rosetta	species	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Choanoflagellata → Craspedida → Salpingoecidae → Salpingoeca → Salpingoeca rosetta	0.75 %
Unclassified	root	N/A	0.00 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908032\|Perma_A_C_ConsensusfromContig148574	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	972	Open in IMG/M
2124908044\|A5_c1_ConsensusfromContig80266	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1350	Open in IMG/M
3300000878\|AL9A1W_1074941	All Organisms → cellular organisms → Bacteria	2239	Open in IMG/M
3300001538\|A10PFW1_11743673	All Organisms → cellular organisms → Bacteria	789	Open in IMG/M
3300002568\|C688J35102_119158461	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Choanoflagellata → Craspedida → Salpingoecidae → Salpingoeca → Salpingoeca rosetta	647	Open in IMG/M
3300004156\|Ga0062589_100443170	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1072	Open in IMG/M
3300004799\|Ga0058863_11867907	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	505	Open in IMG/M
3300005178\|Ga0066688_10423227	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	863	Open in IMG/M
3300005184\|Ga0066671_10008111	All Organisms → cellular organisms → Bacteria	4050	Open in IMG/M
3300005329\|Ga0070683_100332035	All Organisms → cellular organisms → Bacteria	1447	Open in IMG/M
3300005334\|Ga0068869_101538096	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	591	Open in IMG/M
3300005446\|Ga0066686_10641378	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Chthonomonadetes → Chthonomonadales → Chthonomonadaceae → Chthonomonas → Chthonomonas calidirosea	722	Open in IMG/M
3300005467\|Ga0070706_100641983	All Organisms → cellular organisms → Bacteria	986	Open in IMG/M
3300005467\|Ga0070706_100950030	All Organisms → cellular organisms → Bacteria	793	Open in IMG/M
3300005518\|Ga0070699_100076549	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2912	Open in IMG/M
3300005561\|Ga0066699_10957305	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	595	Open in IMG/M
3300005563\|Ga0068855_100507159	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1310	Open in IMG/M
3300005564\|Ga0070664_101667952	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	604	Open in IMG/M
3300005578\|Ga0068854_101795348	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	562	Open in IMG/M
3300005614\|Ga0068856_101083848	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	819	Open in IMG/M
3300005615\|Ga0070702_101063352	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	644	Open in IMG/M
3300005616\|Ga0068852_101675665	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	658	Open in IMG/M
3300005886\|Ga0075286_1011908	All Organisms → cellular organisms → Bacteria	1034	Open in IMG/M
3300006034\|Ga0066656_11060042	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	521	Open in IMG/M
3300006173\|Ga0070716_101394518	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	569	Open in IMG/M
3300006794\|Ga0066658_10260327	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	928	Open in IMG/M
3300006806\|Ga0079220_11004738	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	662	Open in IMG/M
3300006864\|Ga0066797_1248261	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	621	Open in IMG/M
3300006894\|Ga0079215_10179335	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1048	Open in IMG/M
3300007258\|Ga0099793_10372043	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	700	Open in IMG/M
3300007821\|Ga0104323_122530	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1705	Open in IMG/M
3300009174\|Ga0105241_11895010	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	584	Open in IMG/M
3300010375\|Ga0105239_13182492	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	535	Open in IMG/M
3300010399\|Ga0134127_13553158	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	511	Open in IMG/M
3300010403\|Ga0134123_11266549	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	771	Open in IMG/M
3300011444\|Ga0137463_1139483	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	912	Open in IMG/M
3300011992\|Ga0120146_1080441	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	521	Open in IMG/M
3300012010\|Ga0120118_1059599	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	951	Open in IMG/M
3300012199\|Ga0137383_11075537	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	583	Open in IMG/M
3300012200\|Ga0137382_10618483	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	774	Open in IMG/M
3300012203\|Ga0137399_10531845	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	987	Open in IMG/M
3300012212\|Ga0150985_106159672	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	554	Open in IMG/M
3300012212\|Ga0150985_110564317	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	522	Open in IMG/M
3300012285\|Ga0137370_10575953	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	694	Open in IMG/M
3300012356\|Ga0137371_10642822	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	813	Open in IMG/M
3300012359\|Ga0137385_10275710	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1451	Open in IMG/M
3300012469\|Ga0150984_116509692	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	559	Open in IMG/M
3300012685\|Ga0137397_10622554	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	803	Open in IMG/M
3300012944\|Ga0137410_10690798	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	850	Open in IMG/M
3300012951\|Ga0164300_11099179	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	519	Open in IMG/M
3300012958\|Ga0164299_11113970	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	591	Open in IMG/M
3300012986\|Ga0164304_11461001	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	564	Open in IMG/M
3300013100\|Ga0157373_10427302	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	951	Open in IMG/M
3300013105\|Ga0157369_11159540	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	789	Open in IMG/M
3300013766\|Ga0120181_1127252	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	556	Open in IMG/M
3300014054\|Ga0120135_1001490	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1931	Open in IMG/M
3300014166\|Ga0134079_10043778	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1551	Open in IMG/M
3300017657\|Ga0134074_1261470	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	624	Open in IMG/M
3300018000\|Ga0184604_10090756	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	930	Open in IMG/M
3300018000\|Ga0184604_10322896	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	547	Open in IMG/M
3300018028\|Ga0184608_10438094	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	564	Open in IMG/M
3300018051\|Ga0184620_10018870	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1687	Open in IMG/M
3300018061\|Ga0184619_10084560	All Organisms → cellular organisms → Bacteria	1412	Open in IMG/M
3300018061\|Ga0184619_10173347	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	988	Open in IMG/M
3300018075\|Ga0184632_10427459	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	552	Open in IMG/M
3300019867\|Ga0193704_1085859	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	570	Open in IMG/M
3300019868\|Ga0193720_1026448	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	826	Open in IMG/M
3300019876\|Ga0193703_1069865	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	521	Open in IMG/M
3300019877\|Ga0193722_1046312	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1106	Open in IMG/M
3300019881\|Ga0193707_1202675	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	505	Open in IMG/M
3300019890\|Ga0193728_1254728	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	699	Open in IMG/M
3300020004\|Ga0193755_1015748	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2491	Open in IMG/M
3300020006\|Ga0193735_1005685	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	4000	Open in IMG/M
3300020022\|Ga0193733_1030316	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1527	Open in IMG/M
3300022756\|Ga0222622_10957719	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	628	Open in IMG/M
3300022756\|Ga0222622_11129043	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	577	Open in IMG/M
3300025918\|Ga0207662_10188936	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1328	Open in IMG/M
3300025919\|Ga0207657_11102230	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	607	Open in IMG/M
3300025926\|Ga0207659_10533892	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	996	Open in IMG/M
3300025927\|Ga0207687_10845099	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	782	Open in IMG/M
3300025932\|Ga0207690_10783290	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	787	Open in IMG/M
3300026142\|Ga0207698_11419303	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	709	Open in IMG/M
3300026285\|Ga0209438_1006102	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	4091	Open in IMG/M
3300026300\|Ga0209027_1216924	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	614	Open in IMG/M
3300026301\|Ga0209238_1213153	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	567	Open in IMG/M
3300026312\|Ga0209153_1054381	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1425	Open in IMG/M
3300027643\|Ga0209076_1164826	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	617	Open in IMG/M
3300027787\|Ga0209074_10387012	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	582	Open in IMG/M
3300027846\|Ga0209180_10357276	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	832	Open in IMG/M
3300028713\|Ga0307303_10122253	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	610	Open in IMG/M
3300028713\|Ga0307303_10173596	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	526	Open in IMG/M
3300028715\|Ga0307313_10199524	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	620	Open in IMG/M
3300028799\|Ga0307284_10039897	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	1612	Open in IMG/M
3300028811\|Ga0307292_10068736	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1353	Open in IMG/M
3300028824\|Ga0307310_10016168	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	2889	Open in IMG/M
3300028878\|Ga0307278_10122143	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1170	Open in IMG/M
3300028881\|Ga0307277_10009163	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	3807	Open in IMG/M
3300028884\|Ga0307308_10010387	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	4127	Open in IMG/M
3300028885\|Ga0307304_10444515	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	589	Open in IMG/M
3300028885\|Ga0307304_10599078	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	510	Open in IMG/M
3300030510\|Ga0268243_1067663	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	795	Open in IMG/M
3300030777\|Ga0075402_10833793	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	506	Open in IMG/M
3300030904\|Ga0308198_1071909	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	569	Open in IMG/M
3300030904\|Ga0308198_1101702	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	505	Open in IMG/M
3300030972\|Ga0075400_11011011	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1201	Open in IMG/M
3300030987\|Ga0308155_1025122	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	570	Open in IMG/M
3300030989\|Ga0308196_1053230	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	565	Open in IMG/M
3300030989\|Ga0308196_1055160	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	559	Open in IMG/M
3300030990\|Ga0308178_1015595	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1139	Open in IMG/M
3300030990\|Ga0308178_1092624	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	631	Open in IMG/M
3300030990\|Ga0308178_1127803	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	565	Open in IMG/M
3300030993\|Ga0308190_1060784	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	752	Open in IMG/M
3300030993\|Ga0308190_1151408	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	552	Open in IMG/M
3300030993\|Ga0308190_1155681	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	547	Open in IMG/M
3300031081\|Ga0308185_1043957	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	565	Open in IMG/M
3300031093\|Ga0308197_10051810	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1064	Open in IMG/M
3300031093\|Ga0308197_10281200	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	605	Open in IMG/M
3300031096\|Ga0308193_1055261	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	605	Open in IMG/M
3300031096\|Ga0308193_1079464	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	536	Open in IMG/M
3300031098\|Ga0308191_1042474	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	510	Open in IMG/M
3300031098\|Ga0308191_1043406	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	506	Open in IMG/M
3300031099\|Ga0308181_1061479	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	737	Open in IMG/M
3300031099\|Ga0308181_1124198	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	581	Open in IMG/M
3300031114\|Ga0308187_10071104	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1014	Open in IMG/M
3300031114\|Ga0308187_10305389	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	598	Open in IMG/M
3300031123\|Ga0308195_1069965	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	543	Open in IMG/M
3300031124\|Ga0308151_1026835	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	621	Open in IMG/M
3300031125\|Ga0308182_1023423	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	539	Open in IMG/M
3300031421\|Ga0308194_10327455	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	539	Open in IMG/M
3300031422\|Ga0308186_1038898	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	513	Open in IMG/M
3300031505\|Ga0308150_1038241	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	557	Open in IMG/M
3300034661\|Ga0314782_156321	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	563	Open in IMG/M
3300034817\|Ga0373948_0198403	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	522	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	84.96%
Host-Associated	Host-Associated	15.04%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	77.44%
Plants	Host-Associated → Plants	14.29%
Aquatic	Environmental → Aquatic	7.52%
Human	Host-Associated → Human	0.75%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	77.44%
Rhizosphere	Host-Associated → Plants → Rhizosphere	8.27%
Sediment	Environmental → Aquatic → Sediment	7.52%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.02%
Digestive System	Host-Associated → Human → Digestive System	0.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	69.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	7.52%
Loam	Environmental → Terrestrial → Soil → Loam	6.02%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.51%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.51%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.76%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.50%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	51.13%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	7.52%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.52%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	6.02%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.26%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.51%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.51%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.76%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.01%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.50%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.75%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.75%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.75%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.75%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.75%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	39.10%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.27%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	5.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.26%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	4.51%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.76%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.76%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.26%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.26%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.26%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.50%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.50%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	1.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.50%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.50%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.50%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.50%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.75%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.75%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.75%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.75%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.75%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.75%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.75%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.75%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.75%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908032	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Perma_all	Environmental	Open in IMG/M
2124908044	Soil microbial communities from permafrost in Bonanza Creek, Alaska, sample from Active Layer A5	Environmental	Open in IMG/M
3300000878	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A20-5 cm-9A)- 1 week illumina	Environmental	Open in IMG/M
3300001538	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A10-PF 4A)- 1 week illumina	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004799	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-3 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005886	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_205	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006864	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 3 DNA2013-193	Environmental	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007821	Permafrost core soil microbial communities from Svalbard, Norway - sample 2-10-2 Soapdenovo	Environmental	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011444	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT800_2	Environmental	Open in IMG/M
3300011992	Permafrost microbial communities from Nunavut, Canada - A23_65cm_12M	Environmental	Open in IMG/M
3300012010	Permafrost microbial communities from Nunavut, Canada - A7_35cm_12M	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013766	Permafrost microbial communities from Nunavut, Canada - A26_65cm_6M	Environmental	Open in IMG/M
3300014054	Permafrost microbial communities from Nunavut, Canada - A34_5cm_12M	Environmental	Open in IMG/M
3300014166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015	Environmental	Open in IMG/M
3300017657	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015	Environmental	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300019867	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m1	Environmental	Open in IMG/M
3300019868	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2s1	Environmental	Open in IMG/M
3300019876	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3a2	Environmental	Open in IMG/M
3300019877	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m1	Environmental	Open in IMG/M
3300019881	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c2	Environmental	Open in IMG/M
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300020006	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m2	Environmental	Open in IMG/M
3300020022	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s2	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental	Open in IMG/M
3300026300	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026312	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes)	Environmental	Open in IMG/M
3300027643	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028713	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_184	Environmental	Open in IMG/M
3300028715	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300030510	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG (v2)	Environmental	Open in IMG/M
3300030777	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FB5 SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030904	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_202 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030972	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FB4 SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030987	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_144 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030989	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_197 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030990	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_149 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030993	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_185 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031081	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_159 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031093	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031096	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_194 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031098	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_186 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031099	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_152 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031123	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_196 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031124	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_140 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031125	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_153 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031422	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_181 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031505	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_139 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034661	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R3 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034817	Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1	Host-Associated	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Perma_A_C_02327330	2124908032	Soil	MTQTDPEGARGLVDRARDAERRGDTARSLGLYDDAIEALDREQDMALLADTLRWKGTLHREQGETEAAYRCYTQSLIHAEKCGSISCKA
A5_c1_00353270	2124908044	Soil	MTQTDPRGARELVDRARDAERRGETARSLGLYDDAIEALDREQDMALLADTLRWKGTLHREQGETEAAYRCYTQSLIHAEKCGSISCKA
AL9A1W_10749411	3300000878	Permafrost	MTQTDPGRARSLVNLAREAEQRGDAVRSVRLYDDALALLAEETDLPLLADALRWKGTLHREQGETELAYRCYKQSLVHADTCGSLNAQAAGYNC
A10PFW1_117436731	3300001538	Permafrost	LVNLAREAELRGDAVRSLQLYDDALTVLEDETDLPLLADALRWKGTLHREQGETEVAYRCYKQSLVHAETCGSLNC
C688J35102_1191584611	3300002568	Soil	MTQTDPGKSRRLVEQAREAERRGDTARSLSLYDDAIEALEREQNLAVLADALRWKGTLHREQGDTEAAYLCYAQSLIQAEK
Ga0062589_1004431701	3300004156	Soil	MQAESGGVRKLVELAREAERRGDVPKALGLYDDAIEALERGQDLALLADALRWKGTVHREQG
Ga0058863_118679071	3300004799	Host-Associated	MQAESGGVRKLVELAREAERRGDVPKALGLYDDAIEALERGQDLALLADALRWKGTVHREQGDTE
Ga0066688_104232271	3300005178	Soil	MTQTDPGRSRRLVEQAREAERRGDTARSLSLYDDAIEALEREQNLAGLADALRWKGTLHR
Ga0066671_100081115	3300005184	Soil	MTQTDPGRSRRLVEQAREAERRGDTARSLSLYDDAIEALEREQNLAGLADALRWKGTLHREQGDTE
Ga0070683_1003320353	3300005329	Corn Rhizosphere	MSLTEPGRARGLVDKARAAEQRGECARSHGLYDDAIAILERDEDVSMLADTLRWKGTLHREQGETEAA
Ga0068869_1015380962	3300005334	Miscanthus Rhizosphere	MQTESGGARNLVERAREAERRGDVPKSLVFYDDAIEALEREQDLALLADALRWKGTVHREQGETEAAYRCYTQSLIHAEKCGSISSQAHGLNCLAIISQRRGKLLESEK
Ga0066686_106413781	3300005446	Soil	MTRPDSGDVRRLVDLAREAERRGDIAKSLGFYDDAIEMLEREQDLVLLADALRWKGTLHREQGDTESAYRCYTQSLIHAEKCGSI
Ga0070706_1006419831	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MTQTDPGGSRRLVEQAREAERRGDTARSLGLYDDAIEALEREQDLAVLADALRWKGTLHREQGETEAAYQCYHQSL
Ga0070706_1009500302	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MHAEPSGPRGLVNLAREAEQRGDALAALRLYDDALSLLGDEKDLPLLADALRWKGTVHREQGETEVAFRCYKQSLIHA
Ga0070699_1000765494	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MTQTDPGGSRRLVEQAREAERRGDTARSLGLYDDAIEALEREQDLAVLADALRWKGTLHREQGET
Ga0066699_109573051	3300005561	Soil	MTQTGPRGSRRLVEQAREAERHGDTARSLGLYDDAIEALEREQDLAALADALRWKGTLHREQGETEAAY
Ga0068855_1005071591	3300005563	Corn Rhizosphere	MKQTEAGETRSLVERARDAERRGDTATAFGLYDDAIEALGREENLSALADALRWKGTLHREQGETEAAFRLYTESLHQAEKC
Ga0070664_1016679521	3300005564	Corn Rhizosphere	MSLTDPGRARGLVDKARAAEQRGECARSHGLYNDAIALLERDADLAMLADTLRWKGTLHR
Ga0068854_1017953482	3300005578	Corn Rhizosphere	MQTESGGARNLVERAREAERRGDVPKSLVFYDDAIEALEREQDLALLADALRWKGTVHREQGETEAAYRCYTQSLIHAEKCGSISSQ
Ga0068856_1010838481	3300005614	Corn Rhizosphere	MKQTEAGETRSLVERARDAERRGDTATAFGLYDDAIEALGREENLSALADALRWKGTLHREQGETEAAFRLYTESLHQAEKCGSV
Ga0070702_1010633521	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MQTESGGARNLVERAREAERRGDVPKSLVFYDDAIEALEREQDLALLADSLLWKGTVHREQGETEAAYRCYTQSLIHAEKCGSISSQAHGLNCLAIISQR
Ga0068852_1016756651	3300005616	Corn Rhizosphere	VIGHEESQHERQSKFVMSKTDPGGARALVDRARDAERRGDTAKSLGLYDDAIEVLDREHDLALLADTLRWKGTLHREQGETEAAYRCYTQSLIHAEQSGSIACKAHGFNC
Ga0075286_10119081	3300005886	Rice Paddy Soil	MQTESGGARKLVDLAREAERRGDIAKSLGLYDDAIEALEREQDLALLAEALRWKGTVHREQGETEAAYRCYTQSLIHAERCGAIGGKAHGYN
Ga0066656_110600422	3300006034	Soil	MTRPDSGEVRRLVDLAREAERRGDIAKSLGFYDDAIEMLEREQDLVLLADALRWKGTLHREQGETEAAYRCYTQSLIHAEKCGSIRCKAHGFNC
Ga0070716_1013945183	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MDSRAGMTQTGKGGSRRLVEQARDADRRGETARSLSLYDDAIEVLEREKDLVVLADALRWKGTVHREQGETEA
Ga0066658_102603273	3300006794	Soil	MRTESGGTRRLVDLARDAERRGEVSKALGMYDDAIEALEREQDLALLSDTLRWKGTVHREQGETEVAYRCYTQSLIHAEKCGSVSCKAHGFNCLA
Ga0079220_110047381	3300006806	Agricultural Soil	MKQTEAGETRSLVERARDAERRGDTATAFGLYDDAIEALGREENLSALADALRWKGTLHREQGETEAAFRLYTESLHQAEKCGSVGCKAHV
Ga0066797_12482611	3300006864	Soil	MTQTDPGRARRLINLAREAEQRGDAVGSLRLYDDAVSLLEDETDLPLLADALRWKGTLHREQ
Ga0079215_101793351	3300006894	Agricultural Soil	MTQTDPGRARSLVDLAREAELRGDCTRSLQLYDDALTLLADETDLPLLADALRWKGTLHREQGETEIAYRCYKQSLAYA
Ga0099793_103720431	3300007258	Vadose Zone Soil	MTQTDPGGARGLINLAREAEQRGDAMRSLRLYDDALSLLADETDLPLLADALRWKGTVHREQGETEL
Ga0104323_1225301	3300007821	Soil	MTQTDPEGARGLVDRARDAERRGDTARSLGLYDDAIEALDREQDMALLADTLRWKGTLHREQGETEAAYRCYTQSLIHAEKCGSI
Ga0105241_118950101	3300009174	Corn Rhizosphere	MKQTEAGETRSLVERARDAERRGDTATAFGLYDDAIEALGREENLSALADALRWKGTLHREQGETKAAFRLYTES
Ga0105239_131824922	3300010375	Corn Rhizosphere	LETDHVIGHEESQHERQSKFVMSKTDPGGARALVDRARDAERRGDTAKSLGLYDDAIEVLDREHDLALLADTLRWKGTLHREQGETEAAYRCYTQSLIHAEQSGSIACKAH
Ga0134127_135531582	3300010399	Terrestrial Soil	MTGADSVDPRRLVRLAREAEERGETAESLRFYEQAIAALSDESDLELLADAWRWKGTLHREQGETETAHNCYKESLRYAVRCGSVICKAHCYNC
Ga0134123_112665491	3300010403	Terrestrial Soil	MKQTDAAGSRRLVEQARAAERRGETARALGLYDDAIEALEREQDLAVLADALRWKGTLHREQGETEAAYRCYTQSLIQAEK
Ga0137463_11394831	3300011444	Soil	MTQTDSGGARELVDRARDAERRGDTARSLGFYDDAIEALDRGQDISLLADTLRWKGTLHREQGETEAAYRCYTQSLIHAEKCGSMSCKAHGFN
Ga0120146_10804411	3300011992	Permafrost	MTQTDPGRARNLVNLAREAELRGDAVRSLQLYDDALTVLEDETDLPLLADALRWKGTLHREQGETEVAYRCYKQSLVHAETCGSLNCRAHAY
Ga0120118_10595992	3300012010	Permafrost	MTQTDSESWGPRQSSRKESARGLVHRARDAERRGDTARSLGLYDDAIEALEREQDAALLADALRWKGTLHREQGETEAAYRCYTQSLIHAEKCGSIACKAH
Ga0137383_110755372	3300012199	Vadose Zone Soil	MTQTDPGGSRRLVEQAREAERRGETARSLGLYDDAIEALEREQDLAVLADALRWKGTLHREHGDTEAAYQCYHQSLIEAEKCGSIGSKA
Ga0137382_106184831	3300012200	Vadose Zone Soil	MIQTDPGHARGLVELARETEQLGDATRALQLYDDALTLLEDEKDLPLLADALRWKGTVH
Ga0137399_105318451	3300012203	Vadose Zone Soil	MTQTDPGRARSLVNLAREAEQHGDATRSVRLYDDALALLAEETDLPLLADTLRWKGTLHREQGETELAYRC
Ga0150985_1061596721	3300012212	Avena Fatua Rhizosphere	MTQTDPGKSRRLVEQAREAERRGDTARSLSLYDDAIEALEREQNLAILADALRWKGTLHREQGDTEAAYLCYAQSLIQAEKCGSLGA
Ga0150985_1105643171	3300012212	Avena Fatua Rhizosphere	MQTESGGTRRLVDLAREAERRGDVPKALGLFDDAIEALEREQNLALLADALRWKGTVHRE
Ga0137370_105759531	3300012285	Vadose Zone Soil	MKQTGSGETRSLIERARDAERRGDTATAFGFYDDAIETLERDQDLSALADALRWKGTLHREQGETEAAFRLYTESLHQAEKCGSVNCKAHVYNCLAIVA
Ga0137371_106428221	3300012356	Vadose Zone Soil	MTRPDSGEVRRLVDLAREAERRGDIAKSLGFYDDAIEMLEREQDLVLLADALRWKGTLHREQGETEAAYRCYTQSLIHAEK
Ga0137385_102757102	3300012359	Vadose Zone Soil	MTRPDSGEVGRLVDLAREAERRGDIAKSLGFYDDAIEMLEREQDLVLLADALRWKGTL
Ga0150984_1165096921	3300012469	Avena Fatua Rhizosphere	MQTESGGTRRLVDLAREAERRGDVPKALGLFDDAIEALERGEDLALLADALRWKGTVHREQGETEVAYRCYTQSLIHAE
Ga0137397_106225542	3300012685	Vadose Zone Soil	MTQTDSGGPRRLVDLAREAERRGDAAKSLGLYDDAIEALERLQDLVLLADALRWKGTLHREQGETEAAYRCYTQSLIQAEK
Ga0137410_106907982	3300012944	Vadose Zone Soil	MTQTDSGGPRRLVDLAREAERRGDAAKSLGLYDDAIEALERLQDLVLLADALRWKGTLHREQGE
Ga0164300_110991791	3300012951	Soil	MKQAASEESRRLIELARDAERRGDTAKAFGYYDDAIETLEREQEASALAEALRWKGTLHREQGETEAAYRCYTESLH
Ga0164299_111139702	3300012958	Soil	MTTPNPADARGFINLAREAEQRGDTVRSLRLYDDALSLLADETDLPLLADALRWKGTVHREQGETEVAFRCYKQSLVH
Ga0164304_114610012	3300012986	Soil	MTESDGRSRALVNQAREAERRGETVRSFGLYDDAILLLEQEQDLPLLADALRWKGTLHREQGETEVAFRCYRESVANAEKCNAIGPRAH
Ga0157373_104273022	3300013100	Corn Rhizosphere	MKQTEAGETRSLVERARDAERRGDTATAFGLYDDAIEALGREENLSALADALRWKGTLHREQG
Ga0157369_111595401	3300013105	Corn Rhizosphere	MSLTEPGRARGLVDKARAAEQRGECARSHGLYDDAIAILERDEDVSMLADTLLWKGTLHREQGETEAAYRCYKQSIVHADRCGSLGAK
Ga0120181_11272522	3300013766	Permafrost	MTQTDPGRARNLVNLAREAELRGYAVRSLQLYDDALTVLEDETDLPLLADALRWKGTLHREQGETEVAYRCYKQSLVHAETCGSLNCRAHAYNCL
Ga0120135_10014901	3300014054	Permafrost	MSLTEPGRARGLVDKARAAEQRGECARSHGLYDDAIALLERDADIAMLADTLRWKGTLHREQGETEAAYRCYK
Ga0134079_100437782	3300014166	Grasslands Soil	MTQTDPGGSRLVERAREAERRGDTARSLGLYDDAIEALEREQDLVVLADALRWKGTLHREQGDTEAAYRC
Ga0134074_12614701	3300017657	Grasslands Soil	MTRPDSGDVGRLVDLAREAERRGDIAKSLGFYDDAIEMLEREQDLVLLADALRWKGTLHREQGETEAAYRCYTQSLIHAEKCGSIQCKAHGFNCLAIIAQR
Ga0184604_100907561	3300018000	Groundwater Sediment	MMQTQPIDPRSLVDRARESEQRGDTSTSLGLYEEAIEFLGDESDLALLADALRWKGTLHREQGETEAAYRCYKKSLSYAVRCGSVSCKAHCYNCLAIVAQR
Ga0184604_103228962	3300018000	Groundwater Sediment	MTQTDPRALVTLARAAEQRGDLTRSLQLYDDALTFLGDERDLPLLADALRWKGTLHREQGETE
Ga0184608_104380941	3300018028	Groundwater Sediment	VTELNEHSDSLVPRIKQADAGRARTLVDLARDAEQRGDVVRSLRFYDDALALLADETDLPLLADALRWKGTVHREQGETELAYQYYKQSLLHAETCGSIAGKAHAYNC
Ga0184620_100188701	3300018051	Groundwater Sediment	MTHPDRRTAHRLVALAREAEQRGDIAKSLGLYDDALALLEDESDLPLLANALRWKGTVHREQG
Ga0184619_100845601	3300018061	Groundwater Sediment	MTHADPGGARGLIGLAREAEQRGDAVRSLRLYDDALSLLADETDLPLLADALRWKGTVHREQGETEVAYRCYQQSLVHADACGSLNAR
Ga0184619_101733471	3300018061	Groundwater Sediment	MTQTDPRALVNLAREAEQRGDPTRSLQLYDDALTLLGDEQDLPLLADALRWKGTLHREQGETEIAYRCYKQSLMHAETC
Ga0184632_104274592	3300018075	Groundwater Sediment	MKQLDDDSMTHAEPMDPRGLVRLAREAEERGDTARSLRLYEEAIELLKDESDLELLADALRWKGTLHREQGETEVAYNCYKE
Ga0193704_10858591	3300019867	Soil	MTQTDPRAFVNLAREAELRGDVTRSLQLYDDALTLLADERDLQLLADALRWKGTLHREQGETE
Ga0193720_10264483	3300019868	Soil	MTQTDPRALVNLAREAEQRGDATRSLQLYDDALTLLGDERDLPLLADALRW
Ga0193703_10698651	3300019876	Soil	MMQSDPRALVNLAREAEQRGETTRSLQLYDDALTLLGDEKDLPLLADALRWKGTLHREQGETEVAYRCYK
Ga0193722_10463121	3300019877	Soil	MTQTDPGRARGLIEQARKTEQLGDATRALQLYDDALSLLEDETDLPLLADALRWKGTLHREQGETELAHHC
Ga0193707_12026752	3300019881	Soil	MHTDPRALVNLAREAEQRGDATRSLQLYDDVLALLGDERDLPLLADALRWKGTLHREQ
Ga0193728_12547281	3300019890	Soil	MTQIDSESWEPRQSSRKESARGLVNRARDAERRGDTARSLGLYDDAIEALEGEQDAALLADALRWKGTLHREQGETEAAYRCYTQSLIHAE
Ga0193755_10157482	3300020004	Soil	MTTPNPGDARGFINLAREAEQRGDTVRSLRLYDDALSLLADETDLPLLADALRWKGTVHREQGETEVAYRCYKQSLVHAEACGSLNARGAAYNCLAIVAQRRA
Ga0193735_10056851	3300020006	Soil	MTQTDPRALVNLAREAEQRGDATRSLQLYDDALTLLGDERDLPLLADALRWKGTLHREQGETEIA
Ga0193733_10303163	3300020022	Soil	MTQTDSGGARGLVDRARDAERRGDTARSLGLYDDAIEALDREQDMALLADTLRWKGTLHREQGETEA
Ga0222622_109577192	3300022756	Groundwater Sediment	MTQTDPRALVNLAREAEQRGDPTRSLQLYDDALTLLGDEQDLPLLADALRWKGTLHREQGETEIAYR
Ga0222622_111290432	3300022756	Groundwater Sediment	MTHPDRRSAHNLVALAREAEQRGDIAKSLGLYDDALALLEDESDLGLLADALRWKGTVHREQGETEAAYECYTLSLSYAE
Ga0207662_101889363	3300025918	Switchgrass Rhizosphere	MQTESGGARNLVERAREAERRGDVPKSLVFYDDAIEALEREQDLALLADALRWKGTVHREQGETEAAYRCYTQSLIHAE
Ga0207657_111022301	3300025919	Corn Rhizosphere	MQAESGGVRKLVELAREAERRGDVPKALGLYDDAIEALERGQDLALLADALRWKGTVHREQGDTEVAYRCYAQSLIHAEKCGSAGCKAHA
Ga0207659_105338922	3300025926	Miscanthus Rhizosphere	MQTESGGARNLVERAREAERRGDVPKSLVFYDDAIEALEREQDLALLADALRWKGTVHREQGETEAAYRCYTQSLIHAEKCGSISWLRLGKT
Ga0207687_108450991	3300025927	Miscanthus Rhizosphere	MQTESGGARNLVERAREAERRGDVPKSLVFYDDAIEALEREQDLALLADALRWKGTVHREQGETEAAYRCYTQSLIHAEKCGSISSQAHGLNCLAIISQRRGKLLESEKLYTQAAEYASRAGD
Ga0207690_107832902	3300025932	Corn Rhizosphere	MQAESGGVRKLVELAREAERRGDVPKALGLYDDAIEALERGQDLALLADALRWKGTVHRE
Ga0207698_114193032	3300026142	Corn Rhizosphere	VIGHEESQHERQSKFVMSKTDPGGARALVDRARDAERRGDTAKSLGLYDDAIEVLDREHDLALLADTLRWKGTLHREQGETEAAYRCYTQSLIHAEQSGSIACKAHGFNCLAIIAQ
Ga0209438_10061025	3300026285	Grasslands Soil	MTQTDPRALVNLAREAELRGDVARSLQLYDDALTLLGDERDLQLLADAL
Ga0209027_12169241	3300026300	Grasslands Soil	MTQTGPRGSRRLVEQAREAERRGDTARSLSFYDDAIEALEREQDLAALADALRWKGTLHREQGETE
Ga0209238_12131532	3300026301	Grasslands Soil	MTQTDPGRSRRLVEQAREAERRGDTARSLSLYDDAIEALEREQNLAGLADALRWKGTLHREQGDTEAAYLCYAQSLIQAEKCGSIGAKAHGYNCLAIIA
Ga0209153_10543813	3300026312	Soil	MTQTDPGRSRRLVEQAREAERRGDTARSLSLYDDAIEALEREQNLAGLADALRWKGTLHREQGDTEAAYLCYAQSLIQAE
Ga0209076_11648262	3300027643	Vadose Zone Soil	MTQTDPGRARSLVNLAREAEQHGDATRSVRLYDDALALLAEETDLPLLADTLRWKGTLHREQGETELAYRCYK
Ga0209074_103870121	3300027787	Agricultural Soil	MKQTESGGARSLIEQARDAERRGDTAKAFGYYDDAIEGLEREQDIAALSDALRWKGTLHREQGETEAAYRCYTESLHQAEQCGS
Ga0209180_103572763	3300027846	Vadose Zone Soil	MTQTDPGEGARRLGEGSRQPAEGARQLVDRARDAERRGETARSLGLYDHAIEALEREQDAALLADALRWKGTLHREQGETEA
Ga0307303_101222531	3300028713	Soil	MTQPEPGRARGLVNLAREAEQRGDAIRAFQLYDDALALLAEETDLPLLSDALRWKGSLYREQGETELAYRCYKQSLVHAGTCGSLNAQAAGY
Ga0307303_101735961	3300028713	Soil	MTQTDPRALVNLAREAEQRGDATRSLQLYDDALTLLGDERDLPLLADALRWKGTLHREQGETEIAYRCYKQSLMHAETCGSVSCRA
Ga0307313_101995242	3300028715	Soil	MTHADPGGARGLIGLAREAEQRGDAVRSLRLYDDALSLLADETDLPLLADALRWKGTVHREQGETEVAYRCYQQSLVHADACGS
Ga0307284_100398971	3300028799	Soil	MTQTDPDRARSLIEQARKTEQLGDAPRAFQLYDDALSLLEDETDLPLLADALRWKGTLHREQGETELAHHCYKQSLVHAEEC
Ga0307292_100687361	3300028811	Soil	MTHPDRRTAHRLVALAREAEQRGDIAKSLVLYDDALALLEDESDLALLANALRWKGTVHREQGETEAAYECYTLSL
Ga0307310_100161681	3300028824	Soil	MTTPNPGDARGFINLAREAEQRGDTVRSLRLYDDALSLLADETDLPLLADALRWKGTVHREQGETEVAFRCYKQSLVHAEACGSLNARAAAYNCLAIVAQRR
Ga0307278_101221431	3300028878	Soil	VTELNEHSDSLVPRIKQADAGRARTLVDLARDAEQRGDVVRSLRFYDDALALLADETDLPLLADALRWKGTVHREQGETELAYQYYRQSL
Ga0307277_100091635	3300028881	Soil	MTQTDPRALVNLAREAELRGDVTRSLQLYDDALTLLADEHDLQLLADALRWKGTLHREQGETEAAYRCYTQSLIHAET
Ga0307308_100103871	3300028884	Soil	MTQTDPRALVNLAREAEQRGDPTRSLQLYDDALTLLGDEQDLPLLADALRWKGTLHREQGETE
Ga0307304_104445151	3300028885	Soil	MHTDPRALVNLAREAEQRGDATRSLQLYDDALTLLGDERDLPLLADALRWKGTLHREQGETEIAYRCYKQSLVHAETCGSVSCRAHVHNCLAII
Ga0307304_105990782	3300028885	Soil	VSGHEVSQHERQWNFVMTQTDPGGGRALVDRARDAERRGDTARSLGLYDDAIEVLDREHDLALLADTLRWKGTLHREQGETEAAYRCYT
Ga0268243_10676632	3300030510	Soil	LHGQKYSFAVVKQAESGGSRSLIEQARDAERRGDTAKAFGLYDEAIEALEREEDLPALADALRWKGTLH
Ga0075402_108337931	3300030777	Soil	MSLTEPGRARGLVDKARAAEQRGECARSHGLYDDAIALLERDADIAMLADTLRWKGTLHREQGETEAAYRC
Ga0308198_10719091	3300030904	Soil	MTQTDPRALVNLAREAEQRGDATRSLQLYDDALTLLGDERDLPLLADALRWKGTLHREQGETEIAYRCYKQSLTHAETCGSVSCRAHVHNC
Ga0308198_11017021	3300030904	Soil	MTQTDPRAFVNLAREAELRGDVTRSLQLYDDALTLLADERDLQLLADALRWKG
Ga0075400_110110111	3300030972	Soil	MSLTEPGRARGLVDKARAAEQRGECARSHGLYDDAIALLERDADIAMLADTLRWKGTLHREQGETEAAYRCYKQSLAHADRCGSLAAKAHGYNCLAIVAQRRG
Ga0308155_10251221	3300030987	Soil	MTQTDPRALVNLAREAEQRGDATRSLQLYDDALTLLGDERDLPLLADALRWKGTLHREQGETEIAYRCYKQSLTHAETCGSVSCRAHVHNCL
Ga0308196_10532301	3300030989	Soil	MIHHDPRELVNLAREAEQRGDATRSLQLYDDALTMIGDEKDLPLLADALRWKGTLHREQGETEVAYRCYKQSLVHAETC
Ga0308196_10551602	3300030989	Soil	MHTDPRALVNLAREAEQRGDATRSLQLYDDALTLLGDERDLPLLADALRWKGTLHREQGETEIAYRCYKQSLMHAE
Ga0308178_10155952	3300030990	Soil	MMQTQPVDPRSLVDRARESEQRGDPSTSLGLYEEAIEFLGDESDLALLADALRWKGTLHREQGETEAAYRCYKKSLSYAVRCGSVSCKA
Ga0308178_10926242	3300030990	Soil	MTQTDPRALVNLAREAELRGDVIRSLQLYDDALTLLGDERDLQLLSDALRWKGTLHREQGETEAAYRCYRQSLIHAETCDSLNSRAHVHNCLAIIA
Ga0308178_11278031	3300030990	Soil	MMQSDPRALVILAREAEQRGDTTRSLQLYDDALTLLGDDKDVPLLADALRWKGTLHREQGETEVAYRCYKQSLVHAEICGSLGCRAHVYNCLA
Ga0308190_10607842	3300030993	Soil	MTQTDPDRARSLIEQARKTEQLGDAPRAFQLYDDALSLLEDETDLPLLADALRWKGTLHREQGETELA
Ga0308190_11514081	3300030993	Soil	MTQTDPRAFVNLAREAELRGDVTRSLQLYDDALTLLADERDLQLLADALRWKGTLHREQGETEAAYRCY
Ga0308190_11556811	3300030993	Soil	MHTDPRALVNLAREAEQRGDATRSLQLYDDALTLLGDERDLPLLADALRWKGTLHREQGETEIAYRCYKQSL
Ga0308185_10439571	3300031081	Soil	MTQTDPRAFVNLAREAELRGDVTRSLQLYDDALTLLADERDLQLLADALRWKGTLHREQGETEAAYRCYTQSLIH
Ga0308197_100518102	3300031093	Soil	MTTPNPGDARGFINLAREAEQRGDTVRSLRLYDDAPSLLADETDLPLLADALRWKGTVHREQGETEVAYRCYKQSLVHAEACGSLNATAAAYNCLAIVAQRRGNLSESE
Ga0308197_102812001	3300031093	Soil	MTQTDPRAFVNLAREAELRGDVTRSLQLYDDALTLLADERDLQLLADALRWKGTLHREQGETEAAYRCYRQSLIHAETCDSLNSRAH
Ga0308193_10552611	3300031096	Soil	MTQTDPRALVNLAREAEQRGDATRSLQLYDDALTLLGDERDLPLLADALRWKGTLHREQGETEIAYRCYKQSLTHAETCG
Ga0308193_10794642	3300031096	Soil	MIHHDPRELVNLAREAEQRGDATRSLQLYDDALTMLGDEKDLPLLADALRWKGTLHREQGETEVAYRCYKQ
Ga0308191_10424742	3300031098	Soil	MTQTDPRALVNLAREAEQRGDATRSLQLYDDALTMLGDERDLPLLADALRWKGTLHREQGET
Ga0308191_10434062	3300031098	Soil	MHTDPRALVNLAREAEQRGDATRSLQLYDDALTLLGDERDLPLLADALRWKGTLHREQGE
Ga0308181_10614791	3300031099	Soil	MMQTHPVDPRSLVDRARESEQRGDTSTSLGLYEEAIEFLGDESDLALLADALRWKGTLHREQGETEAAYRCYKKSLSYAVRCGSVSCK
Ga0308181_11241982	3300031099	Soil	MTQTDPRALVTLARAAEQRGDLTRSLQLYDDALTFLGDERDLPLLADALRWKGTLHREQGETEVAYRCYKQSLLHAETCGSVGCRAHVY
Ga0308187_100711041	3300031114	Soil	VIQNDPRALVDLARQAEQRGETIRSLQLYDDALTLLGDERDLRLLADALRWKGTLHREQGETEVAYQCYKQSLVHAET
Ga0308187_103053891	3300031114	Soil	MTQTDPRALVNLAREAELRGDVIRSLRLYDDALTLLGDERDLELLSDALRWKGTLHREQGETDAAYRCYRQSLIHAETCDSLNSR
Ga0308195_10699652	3300031123	Soil	MTQTDPRALVNLAREAEQRGDSTRSLQLYDDALTLLGDERDLPLLADALRWKGTLHREQGETEIAYRCYKQ
Ga0308151_10268351	3300031124	Soil	MTQTDPRAFVNLAREAELRGDVTRSLQLYDDALTLLADERDLQLLADALRWKGTLHREQGETEAAYRCYTQSLIHAETCGSLNCRAHVHNC
Ga0308182_10234232	3300031125	Soil	MMQTDPGGARELVDRARDAERRGETARSLGLYDDAIEALDREQDMALLADTLRWKGTLHREQGETEAAYRCYTQSLIQAEKSGS
Ga0308194_103274552	3300031421	Soil	MHTDPRALVNLAREAEQRGDATRSLQLYDDALTLLGDERDLPLLADALRWKGTLHREQGETEIAYRCYKQ
Ga0308186_10388981	3300031422	Soil	MHTDPRALVNLAREAEQRGDATRSLQLYDDALTLLGDERDLPLLADALRWKGTLHREQGETEIA
Ga0308150_10382411	3300031505	Soil	MMQSDPRALVNLAREAEQRGETTRSLQLYDDALTLLGDEKDLLLLADALRWKGTLHREQGETEVAYRCYKQSLVYAETCGSVSCRAHAYNCLAIV
Ga0314782_156321_289_561	3300034661	Soil	MKQTDAAGSRRLVEQARAAERRGETARALGLYDDAIEALEREQDLAVLADALRWKGTLHREQGETEAAYRCYIQSLIQAEKGGSVSCKAHG
Ga0373948_0198403_284_520	3300034817	Rhizosphere Soil	MKQTEAGETRSLVERARDAERRGDTATAFGLYDDAIEALGREENLSALADALRWKGTLHREQGETEAAFRLYTESLHQA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F060262

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences