Metagenome / Metatranscriptome Family F060186

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F060186
Family Type	Metagenome / Metatranscriptome
Number of Sequences	133
Average Sequence Length	51 residues
Representative Sequence	MKLLLAVLALISAGPVAADCPKAADWARAFYSEHYSFYADPSDRVLQFTTPEF
Number of Associated Samples	104
Number of Associated Scaffolds	133

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	70.68 %
% of genes near scaffold ends (potentially truncated)	99.25 %
% of genes from short scaffolds (< 2000 bps)	93.98 %
Associated GOLD sequencing projects	98
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.30

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (98.496 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (31.579 % of family members)
Environment Ontology (ENVO)	Unclassified (42.857 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (43.609 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 49.38% β-sheet: 0.00% Coil/Unstructured: 50.62%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.30
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.30
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 133 Family Scaffolds
PF02518	HATPase_c	6.77
PF13924	Lipocalin_5	6.02
PF13673	Acetyltransf_10	5.26
PF07007	LprI	3.01
PF12680	SnoaL_2	2.26
PF13414	TPR_11	2.26
PF06739	SBBP	1.50
PF12710	HAD	1.50
PF01872	RibD_C	1.50
PF00211	Guanylate_cyc	1.50
PF13396	PLDc_N	1.50
PF13302	Acetyltransf_3	1.50
PF00583	Acetyltransf_1	1.50
PF16798	DUF5069	0.75
PF01513	NAD_kinase	0.75
PF01663	Phosphodiest	0.75
PF14200	RicinB_lectin_2	0.75
PF12697	Abhydrolase_6	0.75
PF13676	TIR_2	0.75
PF01548	DEDD_Tnp_IS110	0.75
PF07883	Cupin_2	0.75
PF13242	Hydrolase_like	0.75
PF12681	Glyoxalase_2	0.75
PF00498	FHA	0.75
PF03596	Cad	0.75
PF09413	DUF2007	0.75
PF00144	Beta-lactamase	0.75
PF02371	Transposase_20	0.75
PF03544	TonB_C	0.75
PF13602	ADH_zinc_N_2	0.75
PF13418	Kelch_4	0.75

COG ID	Name	Functional Category	% Frequency in 133 Family Scaffolds
COG3755	Uncharacterized conserved protein YecT, DUF1311 family	Function unknown [S]	3.01
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	1.50
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	1.50
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	1.50
COG3547	Transposase	Mobilome: prophages, transposons [X]	1.50
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	0.75
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.75
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.75
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.75
COG4300	Cadmium resistance protein CadD, predicted permease	Inorganic ion transport and metabolism [P]	0.75

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.50 %
Unclassified	root	N/A	1.50 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.50 %
Unclassified	root	N/A	1.50 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.50 %
Unclassified	root	N/A	1.50 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	35.34 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.51 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	2.26 %
Unclassified	root	N/A	1.50 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	35.34 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.50 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.50 %
Unclassified	root	N/A	1.50 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	0.75 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.75 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	21.05 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.50 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.50 %
Unclassified	root	N/A	1.50 %
unclassified Blastocatellia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia	0.75 %
Aeromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Aeromonadales	0.75 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	0.75 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	19.55 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.50 %
Unclassified	root	N/A	1.50 %
Verrucomicrobia bacterium SCGC AG-212-E04	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCGC AG-212-E04	0.75 %
Verrucomicrobia bacterium 13_2_20CM_2_54_15_9cls	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 13_2_20CM_2_54_15_9cls	0.75 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	0.75 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.75 %
Burkholderiales genera incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis	0.75 %
Aeromonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Aeromonadales → Aeromonadaceae	0.75 %
Alcaligenaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae	0.75 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	19.55 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.50 %
Unclassified	root	N/A	1.50 %
unclassified Chthoniobacterales	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales	0.75 %
Rhizobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rhizobacter	0.75 %
Aeromonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Aeromonadales → Aeromonadaceae → Aeromonas	0.75 %
Verrucomicrobia bacterium SCGC AG-212-E04	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCGC AG-212-E04	0.75 %
Verrucomicrobia bacterium 13_2_20CM_2_54_15_9cls	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 13_2_20CM_2_54_15_9cls	0.75 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.75 %
Alcaligenaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae	0.75 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	19.55 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.50 %
Unclassified	root	N/A	1.50 %
unclassified Rhizobacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rhizobacter → unclassified Rhizobacter	0.75 %
Chthoniobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	0.75 %
Aeromonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Aeromonadales → Aeromonadaceae → Aeromonas	0.75 %
Verrucomicrobia bacterium SCGC AG-212-E04	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCGC AG-212-E04	0.75 %
Verrucomicrobia bacterium 13_2_20CM_2_54_15_9cls	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 13_2_20CM_2_54_15_9cls	0.75 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.75 %
Alcaligenaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae	0.75 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	19.55 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.50 %
Unclassified	root	N/A	1.50 %
Rhizobacter sp. OV335	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rhizobacter → unclassified Rhizobacter → Rhizobacter sp. OV335	0.75 %
Chthoniobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	0.75 %
Aeromonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Aeromonadales → Aeromonadaceae → Aeromonas	0.75 %
Verrucomicrobia bacterium SCGC AG-212-E04	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCGC AG-212-E04	0.75 %
Verrucomicrobia bacterium 13_2_20CM_2_54_15_9cls	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 13_2_20CM_2_54_15_9cls	0.75 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.75 %
Alcaligenaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae	0.75 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2228664021\|ICCgaii200_c0843123	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1197	Open in IMG/M
3300000891\|JGI10214J12806_10851838	All Organisms → cellular organisms → Bacteria	628	Open in IMG/M
3300000955\|JGI1027J12803_104638720	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300000955\|JGI1027J12803_105053439	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	591	Open in IMG/M
3300002896\|JGI24802J43972_1023882	All Organisms → cellular organisms → Bacteria → Proteobacteria	507	Open in IMG/M
3300003203\|JGI25406J46586_10217227	All Organisms → cellular organisms → Bacteria	559	Open in IMG/M
3300004479\|Ga0062595_100343947	All Organisms → cellular organisms → Bacteria	1034	Open in IMG/M
3300004643\|Ga0062591_101159676	All Organisms → cellular organisms → Bacteria	749	Open in IMG/M
3300005093\|Ga0062594_102008814	All Organisms → cellular organisms → Bacteria	618	Open in IMG/M
3300005181\|Ga0066678_10711571	All Organisms → cellular organisms → Bacteria	669	Open in IMG/M
3300005181\|Ga0066678_10903581	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	578	Open in IMG/M
3300005184\|Ga0066671_10071928	All Organisms → cellular organisms → Bacteria	1831	Open in IMG/M
3300005293\|Ga0065715_11149003	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300005332\|Ga0066388_103145149	All Organisms → cellular organisms → Bacteria	843	Open in IMG/M
3300005332\|Ga0066388_106018759	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M
3300005447\|Ga0066689_10417009	All Organisms → cellular organisms → Bacteria	840	Open in IMG/M
3300005451\|Ga0066681_10560404	All Organisms → cellular organisms → Bacteria	706	Open in IMG/M
3300005553\|Ga0066695_10150106	All Organisms → cellular organisms → Bacteria	1451	Open in IMG/M
3300005557\|Ga0066704_11037887	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	506	Open in IMG/M
3300005568\|Ga0066703_10815906	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCGC AG-212-E04	533	Open in IMG/M
3300005764\|Ga0066903_101490623	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Aeromonadales → Aeromonadaceae → Aeromonas	1276	Open in IMG/M
3300005764\|Ga0066903_102567015	All Organisms → cellular organisms → Bacteria	987	Open in IMG/M
3300005764\|Ga0066903_102748443	All Organisms → cellular organisms → Bacteria → Proteobacteria	955	Open in IMG/M
3300005764\|Ga0066903_107072555	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	581	Open in IMG/M
3300006034\|Ga0066656_10673826	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	666	Open in IMG/M
3300006175\|Ga0070712_101863756	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	527	Open in IMG/M
3300006797\|Ga0066659_10313211	All Organisms → cellular organisms → Bacteria	1202	Open in IMG/M
3300006797\|Ga0066659_10932639	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	725	Open in IMG/M
3300006800\|Ga0066660_10482659	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1040	Open in IMG/M
3300006800\|Ga0066660_10700888	All Organisms → cellular organisms → Bacteria	832	Open in IMG/M
3300009012\|Ga0066710_100525214	All Organisms → cellular organisms → Bacteria	1788	Open in IMG/M
3300009012\|Ga0066710_102704184	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	707	Open in IMG/M
3300010048\|Ga0126373_12065253	All Organisms → cellular organisms → Bacteria	632	Open in IMG/M
3300010159\|Ga0099796_10211194	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	791	Open in IMG/M
3300010159\|Ga0099796_10278418	All Organisms → cellular organisms → Bacteria	703	Open in IMG/M
3300010303\|Ga0134082_10111640	All Organisms → cellular organisms → Bacteria	1087	Open in IMG/M
3300010325\|Ga0134064_10404036	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	546	Open in IMG/M
3300010335\|Ga0134063_10098920	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1322	Open in IMG/M
3300010364\|Ga0134066_10061219	All Organisms → cellular organisms → Bacteria	997	Open in IMG/M
3300010373\|Ga0134128_12247354	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300010401\|Ga0134121_12717336	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	540	Open in IMG/M
3300012198\|Ga0137364_11183443	All Organisms → cellular organisms → Bacteria	573	Open in IMG/M
3300012199\|Ga0137383_10289514	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1199	Open in IMG/M
3300012201\|Ga0137365_10436564	All Organisms → cellular organisms → Bacteria	964	Open in IMG/M
3300012202\|Ga0137363_10042546	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3208	Open in IMG/M
3300012202\|Ga0137363_11435290	All Organisms → cellular organisms → Bacteria	580	Open in IMG/M
3300012205\|Ga0137362_10080024	All Organisms → cellular organisms → Bacteria	2723	Open in IMG/M
3300012207\|Ga0137381_10401636	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1196	Open in IMG/M
3300012208\|Ga0137376_11306990	All Organisms → cellular organisms → Bacteria	615	Open in IMG/M
3300012209\|Ga0137379_10173382	Not Available	2069	Open in IMG/M
3300012211\|Ga0137377_10386983	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1336	Open in IMG/M
3300012211\|Ga0137377_10688590	All Organisms → cellular organisms → Bacteria	957	Open in IMG/M
3300012285\|Ga0137370_10664519	All Organisms → cellular organisms → Bacteria → Proteobacteria	647	Open in IMG/M
3300012350\|Ga0137372_10283219	All Organisms → cellular organisms → Bacteria	1291	Open in IMG/M
3300012350\|Ga0137372_10299125	All Organisms → cellular organisms → Bacteria	1248	Open in IMG/M
3300012350\|Ga0137372_10368614	All Organisms → cellular organisms → Bacteria	1095	Open in IMG/M
3300012350\|Ga0137372_10526577	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	876	Open in IMG/M
3300012351\|Ga0137386_10731368	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 13_2_20CM_2_54_15_9cls	711	Open in IMG/M
3300012351\|Ga0137386_11035823	All Organisms → cellular organisms → Bacteria	582	Open in IMG/M
3300012354\|Ga0137366_10122420	All Organisms → cellular organisms → Bacteria	1964	Open in IMG/M
3300012354\|Ga0137366_10329945	All Organisms → cellular organisms → Bacteria	1119	Open in IMG/M
3300012356\|Ga0137371_10569636	All Organisms → cellular organisms → Bacteria	871	Open in IMG/M
3300012357\|Ga0137384_10599067	All Organisms → cellular organisms → Bacteria	900	Open in IMG/M
3300012357\|Ga0137384_11238056	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	592	Open in IMG/M
3300012361\|Ga0137360_10267677	All Organisms → cellular organisms → Bacteria	1409	Open in IMG/M
3300012362\|Ga0137361_10134681	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2191	Open in IMG/M
3300012896\|Ga0157303_10278919	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300012925\|Ga0137419_11488600	All Organisms → cellular organisms → Bacteria	573	Open in IMG/M
3300012927\|Ga0137416_10529160	All Organisms → cellular organisms → Bacteria	1019	Open in IMG/M
3300012927\|Ga0137416_11908991	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300012929\|Ga0137404_10046953	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3290	Open in IMG/M
3300012929\|Ga0137404_10356228	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	1282	Open in IMG/M
3300012930\|Ga0137407_10705363	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	950	Open in IMG/M
3300012944\|Ga0137410_11095863	All Organisms → cellular organisms → Bacteria	682	Open in IMG/M
3300012944\|Ga0137410_11692367	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300012986\|Ga0164304_11786879	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	514	Open in IMG/M
3300013096\|Ga0157307_1029697	Not Available	944	Open in IMG/M
3300013296\|Ga0157374_10721050	All Organisms → cellular organisms → Bacteria	1011	Open in IMG/M
3300014157\|Ga0134078_10409072	All Organisms → cellular organisms → Bacteria	611	Open in IMG/M
3300014166\|Ga0134079_10696074	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300015053\|Ga0137405_1201456	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	526	Open in IMG/M
3300015242\|Ga0137412_10182301	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1683	Open in IMG/M
3300015359\|Ga0134085_10410664	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rhizobacter → unclassified Rhizobacter → Rhizobacter sp. OV335	609	Open in IMG/M
3300015371\|Ga0132258_13537084	All Organisms → cellular organisms → Bacteria	1069	Open in IMG/M
3300015372\|Ga0132256_103679399	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	516	Open in IMG/M
3300015374\|Ga0132255_101258962	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1115	Open in IMG/M
3300016341\|Ga0182035_12158663	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300016357\|Ga0182032_11478180	All Organisms → cellular organisms → Bacteria	589	Open in IMG/M
3300016387\|Ga0182040_10467529	All Organisms → cellular organisms → Bacteria	1002	Open in IMG/M
3300017659\|Ga0134083_10103141	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1126	Open in IMG/M
3300018000\|Ga0184604_10211771	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	668	Open in IMG/M
3300018000\|Ga0184604_10257256	All Organisms → cellular organisms → Bacteria	611	Open in IMG/M
3300018000\|Ga0184604_10358810	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	519	Open in IMG/M
3300018071\|Ga0184618_10290455	All Organisms → cellular organisms → Bacteria	695	Open in IMG/M
3300019866\|Ga0193756_1048612	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	581	Open in IMG/M
3300019886\|Ga0193727_1006069	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	4872	Open in IMG/M
3300019886\|Ga0193727_1050945	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1336	Open in IMG/M
3300019887\|Ga0193729_1001438	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	12174	Open in IMG/M
3300020000\|Ga0193692_1126195	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	513	Open in IMG/M
3300020005\|Ga0193697_1129128	All Organisms → cellular organisms → Bacteria	581	Open in IMG/M
3300020006\|Ga0193735_1057021	All Organisms → cellular organisms → Bacteria	1151	Open in IMG/M
3300020006\|Ga0193735_1155322	All Organisms → cellular organisms → Bacteria	589	Open in IMG/M
3300020006\|Ga0193735_1164257	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	562	Open in IMG/M
3300020008\|Ga0193757_1025845	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	585	Open in IMG/M
3300021080\|Ga0210382_10094383	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1240	Open in IMG/M
3300021086\|Ga0179596_10541453	All Organisms → cellular organisms → Bacteria	591	Open in IMG/M
3300021413\|Ga0193750_1078154	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	623	Open in IMG/M
3300021560\|Ga0126371_12446940	All Organisms → cellular organisms → Bacteria	632	Open in IMG/M
3300022534\|Ga0224452_1196610	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	620	Open in IMG/M
3300022694\|Ga0222623_10174607	All Organisms → cellular organisms → Bacteria	835	Open in IMG/M
3300022756\|Ga0222622_10088361	All Organisms → cellular organisms → Bacteria	1873	Open in IMG/M
3300022756\|Ga0222622_11133474	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300024347\|Ga0179591_1085040	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2935	Open in IMG/M
3300026330\|Ga0209473_1079705	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1383	Open in IMG/M
3300026523\|Ga0209808_1114242	All Organisms → cellular organisms → Bacteria	1119	Open in IMG/M
3300026547\|Ga0209156_10345074	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300026548\|Ga0209161_10140023	All Organisms → cellular organisms → Bacteria	1409	Open in IMG/M
3300026552\|Ga0209577_10281997	All Organisms → cellular organisms → Bacteria	1244	Open in IMG/M
3300026557\|Ga0179587_10235012	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1170	Open in IMG/M
3300026557\|Ga0179587_10777858	All Organisms → cellular organisms → Bacteria	631	Open in IMG/M
3300027876\|Ga0209974_10302297	All Organisms → cellular organisms → Bacteria	612	Open in IMG/M
3300028536\|Ga0137415_10499768	All Organisms → cellular organisms → Bacteria	1024	Open in IMG/M
3300028814\|Ga0307302_10226143	All Organisms → cellular organisms → Bacteria	915	Open in IMG/M
3300028878\|Ga0307278_10047374	All Organisms → cellular organisms → Bacteria	1948	Open in IMG/M
3300028884\|Ga0307308_10546770	All Organisms → cellular organisms → Bacteria	555	Open in IMG/M
3300030841\|Ga0075384_11184243	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	554	Open in IMG/M
3300030967\|Ga0075399_11156458	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae	588	Open in IMG/M
3300031231\|Ga0170824_112767651	All Organisms → cellular organisms → Bacteria	785	Open in IMG/M
3300031231\|Ga0170824_126821304	All Organisms → cellular organisms → Bacteria	832	Open in IMG/M
3300031890\|Ga0306925_10532065	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1248	Open in IMG/M
3300031954\|Ga0306926_11825102	All Organisms → cellular organisms → Bacteria	689	Open in IMG/M
3300032035\|Ga0310911_10365715	All Organisms → cellular organisms → Bacteria	833	Open in IMG/M
3300032261\|Ga0306920_100621783	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1597	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.74%
Host-Associated	Host-Associated	5.26%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	87.97%
Aquatic	Environmental → Aquatic	6.77%
Plants	Host-Associated → Plants	5.26%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	87.97%
Sediment	Environmental → Aquatic → Sediment	6.02%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.76%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.50%
Freshwater	Environmental → Aquatic → Freshwater	0.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	82.71%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.02%
Loam	Environmental → Terrestrial → Soil → Loam	5.26%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.26%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.50%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.75%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	54.14%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	18.05%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	8.27%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.02%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.51%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.26%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.26%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.50%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.75%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.75%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	31.58%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	16.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	12.78%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	6.02%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.51%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.51%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.01%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.01%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.26%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.50%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.50%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.50%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.50%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.50%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.75%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.75%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.75%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.75%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.75%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002896	Soil microbial communities from Manhattan, Kansas, USA - Sample 300um Nextera	Environmental	Open in IMG/M
3300003203	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010364	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09212015	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012896	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S118-311C-2	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300013096	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300014166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015	Environmental	Open in IMG/M
3300015053	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015359	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300019866	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1m1	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300020000	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3a1	Environmental	Open in IMG/M
3300020005	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m2	Environmental	Open in IMG/M
3300020006	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m2	Environmental	Open in IMG/M
3300020008	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1m2	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021413	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c1	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300024347	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300026330	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)	Environmental	Open in IMG/M
3300026523	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157 (SPAdes)	Environmental	Open in IMG/M
3300026547	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)	Environmental	Open in IMG/M
3300026548	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027876	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes)	Host-Associated	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300030841	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA9 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030967	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA11 Emin (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICCgaii200_08431233	2228664021	Soil	MKLILAVLALITAGSAXADXPKAADWARXXYSKHYSF
JGI10214J12806_108518381	3300000891	Soil	MKLILAVLALITAGSAAADCPKAADWARKFYSEHYSFYAEQSDSVL
JGI1027J12803_1046387201	3300000955	Soil	MKVLLAALALISAGSVAADCPKAADWARAFYAEHYSFYSDPSDRVLQFTTPEFGAL
JGI1027J12803_1050534391	3300000955	Soil	MKILLAGLTLISAASVAAECPKAADWARAFYSEHY
JGI24802J43972_10238822	3300002896	Soil	MKLLLTVLALISAGVAAADCPKAADWARAFYSEHYSFYADP
JGI25406J46586_102172272	3300003203	Tabebuia Heterophylla Rhizosphere	MKILWVALALISVGLAAADCPKPADWARSFYSEHYSFYADAPDPILQFTTPEFGALLKKEWAY
Ga0062595_1003439473	3300004479	Soil	MKVILAVLALISMDLAAADCPKAADWARAFYSEHYSFYANQSDDVL
Ga0062591_1011596763	3300004643	Soil	MKLILAVLALITAGSAAADCPKAADWARKFYSEHYSFYAEQSDSVLQLTTSEFGALLKRE
Ga0062594_1020088142	3300005093	Soil	MKPLLALLALISASPAAADCQKAADWARAFYSEHYSFYADAPDPILQLTTPEFGALLK
Ga0066678_107115711	3300005181	Soil	MKLLLTVLVLISAGPVAADCPKAADWARAFYSEHYSFYADPSDRVLQFTTPEFGA
Ga0066678_109035811	3300005181	Soil	MKLLLAVSALLSAGSAAADCPKAADWARAFYSEHYFFYAG
Ga0066671_100719281	3300005184	Soil	MKLLLAVLALVSAGAAAAADCPKAADCARTFYSEHYSFYADASDR
Ga0065715_111490032	3300005293	Miscanthus Rhizosphere	MKVILAVLALISMDLAAADCPKAADWARAFYSEHYSFYANQSDDVLQFATPEFGAL
Ga0066388_1031451491	3300005332	Tropical Forest Soil	MKLILAVLALISVGLAAADCPKAADWARAFYSDHYSFYAEPSDIILQFTTPEFGALLKREWAYSNG
Ga0066388_1060187592	3300005332	Tropical Forest Soil	MKLLLAVLALINAGPVAADCPKAADWARAFYSEHYSFYADPSDRVLQFTTPEF
Ga0066689_104170091	3300005447	Soil	MKLLLAVLALVSAGAAAAADCPKAADCARTFYSEHYSFYADASDRVLQ
Ga0066681_105604041	3300005451	Soil	MKLLLAVLALISLGSAAADCPKAADWARAFYSEHYSFYADPSDRVLQFTTPEFGALL
Ga0066695_101501061	3300005553	Soil	MKLLLAVLALVSAGAAAAADCPKAADCARTFYSEHYSFYADASDRVLQFTTPEFGA
Ga0066704_110378871	3300005557	Soil	MKLLLAVLALISAGPVAADCPKAADWARAFYSEHYSFYTDPSDRVLQFTTPEFGALLKRE
Ga0066703_108159062	3300005568	Soil	MKLFLAVLALISAGPVAADCRKAADWARAFYSEHY
Ga0066903_1014906232	3300005764	Tropical Forest Soil	MRLLLALLALISAGPAAADCPKAADWARAFYSEHYSFYAGAPDPILQFTTPEF*
Ga0066903_1025670153	3300005764	Tropical Forest Soil	MRLLLALLALISAGPVAADCPKAADWARAFYSEHYLFYGGAPDPILQFTTP
Ga0066903_1027484433	3300005764	Tropical Forest Soil	VIFPKQRMKLILAVLTLISVDLAAADCPKAADWAR
Ga0066903_1070725551	3300005764	Tropical Forest Soil	MKILLTVLALISVARVFADCPKAADWARAFYSDHYSFYADPSDGALQFATQEFGALLKREWAYS
Ga0066656_106738262	3300006034	Soil	MKLILAVLTLISAGLAAADCPKAADWARAFYSEHYSFY
Ga0070712_1018637561	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MKLLLAVLALISAGPVAADCPKAAAWARAFYSEHYSFYADPSDRVLQFTT
Ga0066659_103132111	3300006797	Soil	MKLLLAVLALVSAGAAAAADCPKAADCARTFYSEHYSFYADASD
Ga0066659_109326392	3300006797	Soil	MKILLAVLALISAGSVAADCPKAADWARAFYSEHY
Ga0066660_104826591	3300006800	Soil	MKLLVTLLALISSGVAAADCPKAADWARAFYSEHYSFYADPSDRVLQFAK
Ga0066660_107008882	3300006800	Soil	MKLLLAVLALVSAGAAAAADCPKAADCARTFYSEHYSFYADASDRVLQFTTP
Ga0066710_1005252141	3300009012	Grasslands Soil	MKLLLAVLALVSAGAAAAADCPKAADCARTFYSEHYS
Ga0066710_1027041841	3300009012	Grasslands Soil	MKLLLAVLALISAGPVAADCPKAADWARAFYSEHYSF
Ga0126373_120652533	3300010048	Tropical Forest Soil	VIFPKQRMKLILAVLTLISVDLAAADCPKAADWARTFYS
Ga0099796_102111941	3300010159	Vadose Zone Soil	MKLFLAVLALISAGLAAADCPKAADWARSFYSEHYFFYAGAPDPI
Ga0099796_102784181	3300010159	Vadose Zone Soil	MKLLLAVLALISAGPVAADCPKAADWARAFYSEHYSFYAEPSDRVLQLSTPEFGALLKREWEYSNGEIGHLDY
Ga0134082_101116401	3300010303	Grasslands Soil	MKLLLAVLALISAGPAAADCPKAADWARAFYSEHYFFYAGAPDP
Ga0134064_104040362	3300010325	Grasslands Soil	MKLLLAVLALISAGPVGADCPRAADWARAFYSEHYSFYADPSDRVL
Ga0134063_100989203	3300010335	Grasslands Soil	MKLLLAVLALISAGPAAADCPKAADWARAFYSEHYSFYA
Ga0134066_100612191	3300010364	Grasslands Soil	MKLLLAVLALISAGPAAADCPKAADWARAFYSEHYS
Ga0134128_122473541	3300010373	Terrestrial Soil	MKVILAVLALISMDLAAADCPKAADWARAFYSEHYSFYANQSDDVLQFATPEF
Ga0134121_127173362	3300010401	Terrestrial Soil	MKLLFAVLALVSAGSVAADCPKAADWARAFYSEHYSFYADQSDSLLELTTSEFRALLKREWE
Ga0137364_111834431	3300012198	Vadose Zone Soil	MKLLLAVLALVSAGAAAAADCPKAADCARTFYSEHYSFYADASDRVLQFTTPEFGAL
Ga0137383_102895142	3300012199	Vadose Zone Soil	MKLLFAVLALVSAGSAAADCPKAADWARAFYSEHYSFYAD
Ga0137365_104365641	3300012201	Vadose Zone Soil	MKLLLAVLALIIAGPVAADCPKAADWARAFYSEHYSFYAGPSDRVLQLTTPEFGALLKREWEYSKGEIGH
Ga0137363_100425465	3300012202	Vadose Zone Soil	MKLLLAVLALISAGPAAADCPKAADWARAFYSEHYSFYAGAPDPIL
Ga0137363_114352902	3300012202	Vadose Zone Soil	MKLLLAVLALVSADAAAAADCPKAADCARTFYSEHHSFYADASDRVLQFTTPEFGALLKREWAYSQGEI
Ga0137362_100800241	3300012205	Vadose Zone Soil	MKLLLAVLALISAGPVAADCPKAADWARAFYSEHYSFYADPSDCVLQFTSPEFGALLKREWKY
Ga0137381_104016363	3300012207	Vadose Zone Soil	MKLLLAVLALISAGPAVADCPKAADWARAFYSEHYFFYAGAPDPILQFTTPEFGALL
Ga0137376_113069901	3300012208	Vadose Zone Soil	MMRMKLLLAVLALISAGSAAADCPKPADWARAFYSEHYFFYAGAPDPILQFTTPEFGALLKK
Ga0137379_101733825	3300012209	Vadose Zone Soil	MKLLLAVLALINASPAAADCPKAADWARAFYSEHYFFYAGAPDP
Ga0137377_103869832	3300012211	Vadose Zone Soil	MKLFLAVLALISAGPAAADCPSAADWARAFYSEHYFFYAGAPDPILQFTTPQFGALLKKE
Ga0137377_106885903	3300012211	Vadose Zone Soil	MKLLLAVLALVSAEAAAAADCPKAADWARTFYSQHYSFYADASDRVLQF
Ga0137370_106645192	3300012285	Vadose Zone Soil	MKLLLAVLALIIAGPVAADCPKAADWARAFYSEHYTFY
Ga0137372_102832191	3300012350	Vadose Zone Soil	MKLLLAVLALISAGPVAADCPKAADWARAFYSEHYSFYADPSDRV
Ga0137372_102991253	3300012350	Vadose Zone Soil	MKLLLSVLALISAGSAAADCPKAADWARAFYSEHYFFYAGAPDPILQFTTP
Ga0137372_103686141	3300012350	Vadose Zone Soil	MKLFLAVLALISAGPAVADCPKAADWARAFYSEHYFFYAGAPDPILQFTTPQFGALLKKEWAY
Ga0137372_105265771	3300012350	Vadose Zone Soil	MKLFLAVLALISAGPAAADCPNAADWARAFYSEHYFFYAGAPDPILQFTTPQFGALLKKEWAY
Ga0137386_107313681	3300012351	Vadose Zone Soil	MKLLLAVLALISAGPAAADCPKAADWARAFYSEHYSF
Ga0137386_110358232	3300012351	Vadose Zone Soil	MKLLLAVLALISAGPAAADCPKAADWARAFYSQHYFFYAGAPDPIFQF
Ga0137366_101224204	3300012354	Vadose Zone Soil	MKLLLAVLALISAGPVAADCPKAADWARAFYSEHYSFYAGPSDRVLQLTTP
Ga0137366_103299451	3300012354	Vadose Zone Soil	MKLFLAVLALISAGPAVADCPKAADWARAFYSEHYFFYAGAPDPILQFTTPQFGALLKKEWAYS
Ga0137371_105696362	3300012356	Vadose Zone Soil	MKLLLAVLALISAGRAAADCPKAADWARAFYSEHYSFYVGAPDPILQFTTPEFGALLKKEWAY
Ga0137384_105990671	3300012357	Vadose Zone Soil	MKLFLAVLALISAGPAVADCPKAADWARAFYSEHYFFYAGAPDPILQFTTPQFGAL
Ga0137384_112380561	3300012357	Vadose Zone Soil	MKLFLAVLALISAGPAAADCPNAADWARAFYSEHYFFYAGAPDPILQFTTPQFGALLKKE
Ga0137360_102676771	3300012361	Vadose Zone Soil	MKLLLAVLALISAGPVAADCPKPADWARAFYSEHYSFYADPSDRVLQFT
Ga0137361_101346811	3300012362	Vadose Zone Soil	MKLLLAVLALISAGPAAADCPKAADWTRAFYSEHYSFYAGAPDPILQFTTPEFGALLKKE
Ga0157303_102789192	3300012896	Soil	MKLLLAVLALISVGPVAADCPKAADWARAFYAEHYSFYADPSDRVLQLTTPEFGALLKREWEYSKGEIG
Ga0137419_114886001	3300012925	Vadose Zone Soil	MKLLLSVLALISAGSAAADCPKAADWARAFYSGHYSFYADPSDRVLQFTTSEFGA
Ga0137416_105291601	3300012927	Vadose Zone Soil	MKLHLAVLALISPGSVAADCPKAADWARAFYSEHYSF
Ga0137416_119089911	3300012927	Vadose Zone Soil	MKLLLVVVTVISAEVAAAADCPKAADWARAFYTEHYSFYADSSDRVLQLATPEFGAL
Ga0137404_100469531	3300012929	Vadose Zone Soil	MKLLLAVLALISAGPAAADCPKAADWARAFYSEHYSFYAGAPD
Ga0137404_103562281	3300012929	Vadose Zone Soil	MKLLLAVLALISAGPVAADCPKAADWARAFYSEHYSFYTDPSDRVLQFTTPEFGALLKREWQ
Ga0137407_107053631	3300012930	Vadose Zone Soil	MKLLLAVLALISAGPVAADCPKAADWARAFYSEHYSFYTDPSDRVLQFTTPEFGALLKREWQYSNGE
Ga0137410_110958631	3300012944	Vadose Zone Soil	MKLLLSVLALISAGSAAADCPKAADWARAFYSEHYSFY
Ga0137410_116923671	3300012944	Vadose Zone Soil	MKLLLAVLALLSAGSVAADCPKAADWARAFYSEHYSFYVGAPDPILQL
Ga0164304_117868791	3300012986	Soil	MKLLMAVLALISAGPVAADCPKAADWARTFYSEHYSFYADPSDRALQFTTPEFGAL
Ga0157307_10296971	3300013096	Soil	MKLLLAVLALISVGPVAADCPKAADWARAFYAEHYSFYADPSDRVLQ
Ga0157374_107210501	3300013296	Miscanthus Rhizosphere	MKVILAVLALISMDLAAADCPKAADWARAFYSEHYSFYANQSDDVLQFATPEFGTLLKRE
Ga0134078_104090721	3300014157	Grasslands Soil	LLLAVLALVSAEAAAAADCPKAADWARTFYSQHYSFYADASDRVLQFTTPEFGALLKR*
Ga0134079_106960742	3300014166	Grasslands Soil	MKLLLAILALVSAEAAAAADCPKAADWARTFYSQHYSFYADAS
Ga0137405_12014562	3300015053	Vadose Zone Soil	MKLLLAVLALISAGPVAADCPKAADWARAFYSQHYSFYTDPSDRVLQ
Ga0137412_101823012	3300015242	Vadose Zone Soil	MKLLLAVLALISAGPVAADCPKAADWARAFYSERYSFYAEPSDRVLQFTTPEF
Ga0134085_104106641	3300015359	Grasslands Soil	MKLLLAVLALISEGPTAADCPKAADWARAFYSEHYSFYAGAPDPILEFT
Ga0132258_135370843	3300015371	Arabidopsis Rhizosphere	MKVILAVLALISMDLAAADCPKAADWARAFYSEHYSFYANQSDDVLQFATP
Ga0132256_1036793992	3300015372	Arabidopsis Rhizosphere	MKLLFAVLALVSAGAVAANCPKAPDWARAFYSEHYSFYAHPSDLVLKLTT
Ga0132255_1012589622	3300015374	Arabidopsis Rhizosphere	MKVLLAVLALISGSLVAADCPKAADWARAFYSEHYSFYADQSDRVLELTTPEFGALLKREWEYSNGEIG
Ga0182035_121586631	3300016341	Soil	MKRLLAVLALISAGSVAADCPKPADWARAFYSEHYSFYAERSDPVLQLTTPEFGALLKRGMGIF
Ga0182032_114781801	3300016357	Soil	MKLLLAVLALLGAGPAAADCPKAADWARAFYSEHYFFYADAPDPILQFTTPEFGALLK
Ga0182040_104675291	3300016387	Soil	MKLILALLALISVGLAAADCPKAADWARAFYSEHYSFYAEPSDIILQF
Ga0134083_101031413	3300017659	Grasslands Soil	MKLLLAVLALISAGPVAADCPKAADWARAFYSEHY
Ga0184604_102117712	3300018000	Groundwater Sediment	MKLLLAVLALISADSVAADCPKAADWARTFYSEHYSFYADA
Ga0184604_102572562	3300018000	Groundwater Sediment	MKLFLAVLALISAGPAAADCPKAADWARAFYSEHYSFYADSSDRVLQFTTPEFGALLKREWKYS
Ga0184604_103588101	3300018000	Groundwater Sediment	MKLLLAVLALSSAGPVAADCPKAADWARAFYSEHYSFYADP
Ga0184618_102904552	3300018071	Groundwater Sediment	MKLLLAVLALISAGPVAADCPKAADWARAFYSEHYSFYADPSDRVSQFTTPEFGALLKREWEYSN
Ga0193756_10486122	3300019866	Soil	MKLLLAVLALISASPVAADCPKAADWARAFYSEHYSFYVDPSDRVLQFTTPEFGA
Ga0193727_10060691	3300019886	Soil	MKLLLAVLALISAGPVAADCPKAADWARAFYSEHYSFYADPSDRVLQFTTPEFGAL
Ga0193727_10509451	3300019886	Soil	MKLLLAVLALISAGPVAADCPKAADWARAFYSEHYSFYADPS
Ga0193729_10014381	3300019887	Soil	MKLLLAVLALISAGPAAADFPKAADWARAFYSEHYFFYAGAPDP
Ga0193692_11261952	3300020000	Soil	MRTKLLFAVLALVSAGSVAADCPKAADWARAFYSEHYSFYADPSDRVLQFTTPEFGAL
Ga0193697_11291281	3300020005	Soil	MKLLLAVLALISAGPVAADCPKAADWARAFYSEHYSFYVDPSDRVLQFTTPEFG
Ga0193735_10570212	3300020006	Soil	MKLLLAVLALISAGLAAADCPKAADWDRAFYSEHYSFYAGEADPIL
Ga0193735_11553221	3300020006	Soil	MKLLLAVLALISAGPVAADCPKAADWARAFYSEHYSFYADRSDRVLQYTTPEFGALLKREWAYS
Ga0193735_11642572	3300020006	Soil	MKLLLAVLALISAGPAAADCPKPADWARAFYSEHYFFYAGAPDPI
Ga0193757_10258452	3300020008	Soil	MKLLLAVLALISAGPVAADCPKAADWARAFYSEHYSFYADQSDRVLKLTTSEFGAL
Ga0210382_100943832	3300021080	Groundwater Sediment	MKLLLAVLALISAGPAAADCPKAADWARAFYSEHYFFYAGAP
Ga0179596_105414532	3300021086	Vadose Zone Soil	MKLLLAVLALVSAEAAAAADCPKAADWARTFYSQHYSFYADASDRVLQFTTPEFGTV
Ga0193750_10781542	3300021413	Soil	MKLLLAVLALISAGPVAADCPKAADWARAFYSEHYSFYA
Ga0126371_124469401	3300021560	Tropical Forest Soil	VIFPKQRMKLILAVLTLISVDLAAADCPKAADWARTFYSEHYSFYAEPSDTILKFTTAE
Ga0224452_11966101	3300022534	Groundwater Sediment	MKLLLAVLALISAGPVAADCPKAADWVRAFYSEHYS
Ga0222623_101746071	3300022694	Groundwater Sediment	MKLLLAVLALISAGPVAADCPKAADWARAFYSEHYSFYADPSDRVLQFTTPEFGALLKREWKYSNGE
Ga0222622_100883611	3300022756	Groundwater Sediment	MKLLLAVLALISAGPVAADCPKAADWARAFYSEHYSFYADSSDR
Ga0222622_111334741	3300022756	Groundwater Sediment	MKLLLAVLALISAGPVAADCPKAADWARAFYSEHYSFYADPSDRVLQFTTPEF
Ga0179591_10850406	3300024347	Vadose Zone Soil	MKLFLAVLALINASLAAADCPKAADWARSFYNLSL
Ga0209473_10797053	3300026330	Soil	MKLLLAVLALISAGPAAADCPKAADWARAFYSEHYFFYAGAPDPILQFTTPEFGALL
Ga0209808_11142423	3300026523	Soil	MKLLLAVLALISAGPAAADCPKAADWARAFYSEHYFF
Ga0209156_103450742	3300026547	Soil	MKLLLAVLALISAGPVAADCPKAADWARAFYSEHYSFY
Ga0209161_101400231	3300026548	Soil	MKLLVTLLALISSGVAAADCPKAADWARAFYSEHYSFYADPSDRVLQFAT
Ga0209577_102819971	3300026552	Soil	MKILLAVLALISAGSVAADCPKAADWARAFYSEHYSFYADPSDRVLQFTTPEFGALLKREWAYSNGEIGHLD
Ga0179587_102350121	3300026557	Vadose Zone Soil	MKLFLAVLALINASLAAADCPKAADWARSFYTEHYFFYAGAPDPIL
Ga0179587_107778582	3300026557	Vadose Zone Soil	MKLLLAVLALVSAEAAAAADCPKAADWARTFYSQHYSFYADASDRVLQFTTPEF
Ga0209974_103022972	3300027876	Arabidopsis Thaliana Rhizosphere	MKLLLTVLALISAGPVAADCPKAADWARAFYSEHYSFYADPSDRVLQFTTPEFGALLKSEWAYSKGEIGHL
Ga0137415_104997681	3300028536	Vadose Zone Soil	MKLLLAVLALISPGSVAADCPKAADWARAFYSEHYSF
Ga0307302_102261431	3300028814	Soil	MKLLLAVLALISAGPVAADCPKAADWARAFYSEHYSFYADSSDRVLQFTTPEFGALLKREWEYSNGEIGH
Ga0307278_100473741	3300028878	Soil	MKLLLAVLALISAGPVAADCPKAADWARAFYSEHYSFYADPSDRVLQFTTPEFGALLKR
Ga0307308_105467702	3300028884	Soil	MKLLLAVLALISAGPAAADCPKAADWARAFYSEHYSFYAGAPDPILQFTTPEFGA
Ga0075384_111842432	3300030841	Soil	MKPLLAVLALISAGPAAADCPKAADWARAFYSEHYSFYVGAPDPILQ
Ga0075399_111564582	3300030967	Soil	MKLLLAVLALISAGPVAADCPKAADWARAFYSEHYSFYADPSDRVLKFTTSEFGALLKREWEYSNGEIGHLTQRRRLESL
Ga0170824_1127676512	3300031231	Forest Soil	MKLFLAVFALISAGPVAADCPKVADWARAFYSEHYSFYAEPSDHVLQF
Ga0170824_1268213041	3300031231	Forest Soil	MKLLFEVLALINAGLVAADCPKAADWARSFYTEHYFFYAGAPDPILQFTTPQFGALLKKEWAYSKG
Ga0306925_105320651	3300031890	Soil	MKLILALLALISVGLAAADCPKAADWARAFYSEHYFFY
Ga0306926_118251022	3300031954	Soil	MKRLLAVLALISAGSVAADCPKPADWARAFYSEHYSFYAERSDPVLQL
Ga0310911_103657152	3300032035	Soil	MKLILALLALISVGLAAADCPKAADWARAFYSEHYFFYAKAPDSILEFTTPEFGA
Ga0306920_1006217831	3300032261	Soil	MKLLLAVLALLGAGPAAADCPKAADWARAFYSEHYFFYADAPDPI

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F060186

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences