Basic Information | |
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Family ID | F060179 |
Family Type | Metagenome |
Number of Sequences | 133 |
Average Sequence Length | 44 residues |
Representative Sequence | MSATPDSTLADCEQLVADLQRQLAECRAERDEALEYQTATS |
Number of Associated Samples | 91 |
Number of Associated Scaffolds | 133 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 100.00 % |
% of genes near scaffold ends (potentially truncated) | 98.50 % |
% of genes from short scaffolds (< 2000 bps) | 91.73 % |
Associated GOLD sequencing projects | 82 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.54 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (59.398 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (52.632 % of family members) |
Environment Ontology (ENVO) | Unclassified (81.203 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Unclassified (51.128 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 52.17% β-sheet: 0.00% Coil/Unstructured: 47.83% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.54 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Freshwater Sediment Tropical Forest Soil Soil Soil Hardwood Forest Soil Tropical Forest Soil Soil Corn, Switchgrass And Miscanthus Rhizosphere Agricultural Soil Plant Litter Biofilm |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
Ga0066395_102248481 | 3300004633 | Tropical Forest Soil | MSATPDSTLADSEQLIADLQRQLAECRAERDEALEYQTATSDVLNVISRSTAD |
Ga0070714_1024330401 | 3300005435 | Agricultural Soil | MSAIPDSTLRDSQQLIADLQRQLAECKAERDEALEYQTATSD |
Ga0070707_1010068912 | 3300005468 | Corn, Switchgrass And Miscanthus Rhizosphere | MSVTPDSTLADSEQLIANLHRQLAECRAERDEALQRETATTEV |
Ga0070697_1018213471 | 3300005536 | Corn, Switchgrass And Miscanthus Rhizosphere | MSATPDSTFTNSEHLIADLQRQLAECRAERDEAREYQTATSDVLNVISRSTADVQPVLD |
Ga0070765_1000362661 | 3300006176 | Soil | MSAIPDSTLADCEQLVADLQRQLAECRAERDEAREYQTATSDVLKVIS |
Ga0126374_114897812 | 3300009792 | Tropical Forest Soil | MSAIPDSTLADSQQLIADLQRQLAERTAERDEAPEYQTATALHTLPL |
Ga0126373_118572321 | 3300010048 | Tropical Forest Soil | MSAIPDSTLAGSEQLVADLQRQLAECRAERDEALEYQTAT |
Ga0126370_112581062 | 3300010358 | Tropical Forest Soil | MSVIADSTLADSEQLIADLQRQLAECRAERDEALEQQTATAF |
Ga0126372_124481061 | 3300010360 | Tropical Forest Soil | MSPTPDSTLVELVNLRRQLAERTAERDEALEYQSAISDVLKIIASSTSD |
Ga0126378_111862782 | 3300010361 | Tropical Forest Soil | MSATPDSTLADSDQFVADLQRQLAECRAERDEALQRETA |
Ga0126381_1020361031 | 3300010376 | Tropical Forest Soil | MSAIPDSTLAESQQLIADLQRQLAECRAERDKAIEYQTATSDVLN |
Ga0126369_111456521 | 3300012971 | Tropical Forest Soil | MSAIPDSTLAASEQLIADLQRQLIECRAERDEAREYQTATSDV |
Ga0182036_106802011 | 3300016270 | Soil | MSATRDSTLADSKQLIADLQRQLAECRVERDEALEYQTVTS |
Ga0182036_117936122 | 3300016270 | Soil | MSATPDSTLSDSGQLIADLQRQLAECRAERDEALQRETATAE |
Ga0182041_106869752 | 3300016294 | Soil | MNATPDSTLADCEQLIAVLQRQLAECRAERDEALEYQTATS |
Ga0182041_110804542 | 3300016294 | Soil | MSPIPDSTLADCEQLVADLQRQLAECRAERDEALEYQTA |
Ga0182033_105130114 | 3300016319 | Soil | MSAIPDSTLADCQQLVADLQRQLAECRAERDEALEYQT |
Ga0182033_121138801 | 3300016319 | Soil | MSAIPDSTLAASEQLIADLQRQLAECRAERDEALEYQTAT |
Ga0182035_106799682 | 3300016341 | Soil | MSAIPDSTLAASEQLIADLQRQLAECRAERDEALEYQTATSDVL |
Ga0182035_112715562 | 3300016341 | Soil | MSATRDSTLADSEQLIADPAQLITDLQRQLAERTAERDEALEYQTATADVLNV |
Ga0182035_119127521 | 3300016341 | Soil | MSAIPDSTLADSELLIADLQRQLAECRAERDEALQRETATAE |
Ga0182032_100846884 | 3300016357 | Soil | MSAIPDSTLADCKQLVADLQRQLAECRAERDEAIEYQ |
Ga0182034_103976571 | 3300016371 | Soil | MSATQGSTLADSEQLVAELQRQLAECKAERDEALEYQ |
Ga0182034_109586252 | 3300016371 | Soil | MNATHNSTLADCQQLVADLQRQLAECRAERDEALEYQTATSDVLNVIS |
Ga0182034_117075982 | 3300016371 | Soil | MSATPDSTLADCEQLVAHLRHQLAECRAGRDEALAREAALAEVL |
Ga0182037_100581204 | 3300016404 | Soil | MSAIPDSTFADSEQLIADLQRQLAEALAQQTATAEVLRVI |
Ga0182037_105256071 | 3300016404 | Soil | MSPIPDSTLADCEQLVADLQRQLAECRAERDEALEYQTATS |
Ga0182037_111101141 | 3300016404 | Soil | MSAIPDSTFAESEQLIAELQRQLAERTAERDEALEYQTATSE |
Ga0182037_120817122 | 3300016404 | Soil | MSTTPDSTLANPELLIADLQRQLAQCRAERDEALEQQ |
Ga0182037_121642171 | 3300016404 | Soil | MSAIPDSTLADSERLIADLQRQLAECRAERDEALQRETA |
Ga0182039_118814862 | 3300016422 | Soil | MNATPDSTLADSQQLIADLQRQLAERTAERDEAIEYQTATSDVLQVISRS |
Ga0182038_107055591 | 3300016445 | Soil | MSANPDSTLADCEQLVADLQRQLAECRAERDEALEYQ |
Ga0182038_109301851 | 3300016445 | Soil | MSAIPDSTLADCQQLLADLQRQLAECRAERDKALEYQGATSDVLNVISRSTADVQPVL |
Ga0187816_104841911 | 3300017995 | Freshwater Sediment | MSATPDSTLADCQQLVADLQRQLAECRAEQDEAIEYQTATSDV |
Ga0210401_106230743 | 3300020583 | Soil | MSAMPDSTLATSERLIADLQRQLAECRAERDEALQRETATAE |
Ga0210406_107653371 | 3300021168 | Soil | MRTTPTSTLADSEQLIADLQRQLAECRAERDEALEYQTATSDVL |
Ga0187846_101305581 | 3300021476 | Biofilm | MSATPDSTLADCQKLVADLQRQLAECRAERDEAREYQTA |
Ga0210402_110560052 | 3300021478 | Soil | MSATPDSTFADSEQLVADLHRQLAECRAERDEALEQQAATAEVLQV |
Ga0126371_101608482 | 3300021560 | Tropical Forest Soil | MSATPDSTLANPEQLVADLQRQLAERDAALAEALEQQT |
Ga0126371_104318911 | 3300021560 | Tropical Forest Soil | MSATRDSTLADSEQLVADLRRQLAERTGERDEARKYQTATSD |
Ga0126371_105438223 | 3300021560 | Tropical Forest Soil | MSATPDSTFADSEQLIADLQRQLAECRTERDEALQRETAT |
Ga0126371_113662191 | 3300021560 | Tropical Forest Soil | MPDSTLADCQQLVADLQRQLAECRAERDEALEYQTATSDVLDVIARSTGDV |
Ga0126371_116407542 | 3300021560 | Tropical Forest Soil | MSATPNSTLADCEQLVADLQRQLAECRAERDAGLA |
Ga0126371_133373441 | 3300021560 | Tropical Forest Soil | MSVRSESTLADCQQLVADLQRQLAECRAQRDECKAERDEALRQQTATAEVLQ |
Ga0318516_101456932 | 3300031543 | Soil | MSATPASSLTDSEQLIADLQRQLAKCRAERDEALEYQTATSDVLKV |
Ga0318534_104160632 | 3300031544 | Soil | MNPTPDSTLADSEQLIADLRRQLAERTTERDEALEYQTAISDVLNVIS |
Ga0318534_104841161 | 3300031544 | Soil | MNATPDSTLADSAQLVADLQRQLAECRAERDEAIEYQTATSD |
Ga0318541_101610001 | 3300031545 | Soil | MNATHNSTLADCQQLVADLQRQLAECRAERDEALEYQTATSDVLN |
Ga0318541_105500171 | 3300031545 | Soil | MSAIPDSTLADCQQLVADLQRQLAECRAERDEALEYQTATSD |
Ga0318541_108196771 | 3300031545 | Soil | MSATPDSTLADCEQLVADLQRQLAECRAERDEALEYQTATS |
Ga0318528_104530751 | 3300031561 | Soil | MSATRESTLADSEQLVADLQRQLAECKAERDEAIEYQTATSFSHPPPR |
Ga0318573_107512371 | 3300031564 | Soil | MNATHNSTLADCQQLVADLQRQLAECRAERDEALEYQTATSDVLRV |
Ga0318515_103813761 | 3300031572 | Soil | MSPIPDSTLADCEQLVADLQRQLAECRAERDEALEYQTATSDVLNVISRST |
Ga0310915_111110642 | 3300031573 | Soil | MNATHNSTLADCQQLVADLQRQLAECRAERDEALEYQTATSDVLNVI |
Ga0310915_112210821 | 3300031573 | Soil | MNATPDSTLADSQQLIADLQRQLAERTAERDEAIEYQTATSDVLQV |
Ga0310915_112874931 | 3300031573 | Soil | MSATRESTLADSEQLIADLQRQLAECRAERDEALEYQTATSFSHPP |
Ga0318542_100530451 | 3300031668 | Soil | MSATHNSTLADCQQLVADLQRQLAECRAERDEALEYQTATSDVLN |
Ga0318561_102036581 | 3300031679 | Soil | MSAMPDSMSTDPKDRLIADLQRQLAECRAERDEALEQQTATTEVLQVINS |
Ga0318561_108130151 | 3300031679 | Soil | MSANPDSTLADCEQLVADLQRQLAECRAERDEALEY |
Ga0318560_101985412 | 3300031682 | Soil | MSAIPDSTLAASEQLIADLQRQLAECRAERDEALEYQTATSDVLN |
Ga0307474_113143312 | 3300031718 | Hardwood Forest Soil | MSATPASTLTDSEQLIADLQRQLAECRAERDESREYQTATSEVLNVISRSTSDV |
Ga0306917_104067662 | 3300031719 | Soil | MSAMPEGTLAGSERLIADLQRQLDEALQRETANAEVLQVINSSPG |
Ga0306917_109852882 | 3300031719 | Soil | MSATPASTLTDSEQLIADLQRQLAECRAGRDEALEYQTATSDVLKVIS |
Ga0306917_110672792 | 3300031719 | Soil | MSATPDSTLADSEQLIADLQRQLAECRAQRDEALQRETAAAEILQ |
Ga0318493_104143741 | 3300031723 | Soil | MSANPDSTLADCEQLVADLQRQLAECRAERDEALEYQAATSDV |
Ga0318501_104161011 | 3300031736 | Soil | MNATPDSTLANSEQLVADLQRQLAECRAERDEALEYQ |
Ga0318501_104527791 | 3300031736 | Soil | MSAIPDSTLADSELLIADLQRQLAECRAERDAALQRETATAE |
Ga0306918_100407681 | 3300031744 | Soil | MNTTPDSTLADCEQLIADLQRQLAEYRAERDEAREYQTATS |
Ga0306918_111828053 | 3300031744 | Soil | MNATHNSTLADCQQLVADLQRQLAECAAERDEALEYQTATSDVLSVI |
Ga0318494_106429732 | 3300031751 | Soil | MNPTPDSTLADSEQLIADLRRQLAERTTERDEALEYQTAISDVLNVISRS |
Ga0318494_107347961 | 3300031751 | Soil | MNATPDSILSDSPQLIADLQRQLAQCRAERDEAREYQTATSDVLNVISRSTGDVQPVLD |
Ga0318509_108374752 | 3300031768 | Soil | MSANPDSTLADCEQLVADLQRQLAECRAERDEALEYQTA |
Ga0318546_104163911 | 3300031771 | Soil | MSPTPNSSLAYSEQFVADLQRQLAECRAERDEALQRETATTEV |
Ga0318498_104240051 | 3300031778 | Soil | MSATQGSTLADSEQLVADLQRQLAECKAERDEALEYQTATSDVLNVISRSTSDVQPV |
Ga0318566_105325942 | 3300031779 | Soil | MSAIPDSTLADSEQLIADLQRQLAECRAERDEALEYQT |
Ga0318547_110891552 | 3300031781 | Soil | MSAIPDSTLADCQQLVADLQRQLTECRAERDKALEYQTATSDVLNVISRSTF |
Ga0318552_103635472 | 3300031782 | Soil | MSAIPDSTLAASEQLIADLQRQLAECRAERDEALEYQTATSDVLNVISRSSSDAQPV |
Ga0318552_106818331 | 3300031782 | Soil | MSAMPEGTLAGSERLIADLQRQLDEALQRETANAE |
Ga0318529_106020831 | 3300031792 | Soil | MSAMPEGTLAGSERLIADLQRQLDEALQRETANAEVLQVIN |
Ga0318548_100114434 | 3300031793 | Soil | MSATRDSTLADSQQLIADLQRQLAECRAERDEALEYQTATSDV |
Ga0318576_101875153 | 3300031796 | Soil | MSAPPDSTLADSKQLVADLQRQLAECRAERDAGLARE |
Ga0318550_103042741 | 3300031797 | Soil | MSAIPDSTLADCKQLVADLQRQLAECRAERDEAIEYQSAT |
Ga0318550_106473951 | 3300031797 | Soil | MSATRDSTLADSEQLIADLQRQLAEYRAERDEAIEYQTATSDVLN |
Ga0318523_102206712 | 3300031798 | Soil | MNPTPDSTLADSEQLIADLRRQLAERTTERDEALEYQTAISDVLNVISR |
Ga0318568_107579911 | 3300031819 | Soil | MNATHNSTLADCQQLVADLQRQLAECRAERDEALEYQTATSDVLNVISRSTSDV |
Ga0318567_107584202 | 3300031821 | Soil | MSANPDSTLADCEQLVADLQRQLAECRAERDEAFEYQA |
Ga0310917_106075022 | 3300031833 | Soil | MSAPPDSTLADSKQLVADLQRQLAECRAERDEALQRETATAEVLRV |
Ga0318511_105983612 | 3300031845 | Soil | MSAIPDSTLADAEQIIADLRRQLAECRAERDEALQRETATAEI |
Ga0306919_100187811 | 3300031879 | Soil | MSANPDSTLADCEQLVADLQRQLAECRAERDEAFEYQAATSEVLNV |
Ga0306919_104636723 | 3300031879 | Soil | MSAIPDSTLADSERLIADLQRQLAECRAERDEALQRETATAEIL |
Ga0318536_105263361 | 3300031893 | Soil | MSATPASSLTDSEQLIADLQRQLAKCRAERDEALE |
Ga0318551_104471691 | 3300031896 | Soil | MSAIPDSTLADSEQLIADLQRQLAECRAERDEALEYQTATSDVLK |
Ga0318520_101866242 | 3300031897 | Soil | MSAIPDSTLADSEQLIADLQRQLAECRAERDEALEYQ |
Ga0306923_102631821 | 3300031910 | Soil | MSAIPSTLADSEQLIADLQRQLAERTAERDEAREYQTATSEVLNVISRSTA |
Ga0306923_104268191 | 3300031910 | Soil | MSATPDSTLAASEQLIADLQRQLAECRAERDEAIDYQTATSDVLNIISRSTADVQ |
Ga0306923_123233222 | 3300031910 | Soil | MSATPDSTLADCEQLVADLQRQLAECRAERDEALEYQTAT |
Ga0306921_109938911 | 3300031912 | Soil | MSATQGSTLADSEQLVADLQRQLAECKAERDEALEYQ |
Ga0306921_114286091 | 3300031912 | Soil | MSATPASTLADCEQLVADLQRQLAECRTERDEALEYQ |
Ga0310912_114555912 | 3300031941 | Soil | MSAIPDSKLADSEQLIADLQRQLAECRAERAEALEYQTATSDVLNVISRSTA |
Ga0310916_109218301 | 3300031942 | Soil | MSAIPDSTLADCEQRVADLQRQLAECRAERDESLEYQTATSDVLNVISRSTSDV |
Ga0310916_110524911 | 3300031942 | Soil | MSATPDSTLADSEQLIADLQRQLAECRAQRDEALQRETAA |
Ga0310913_102586064 | 3300031945 | Soil | MSAIPDSTLADCQQLVADLQRQLTECRAERDKALE |
Ga0310910_112372081 | 3300031946 | Soil | MNATPDSTLADSQQLIADLQRQLAERTAERDEAIEYQTATSD |
Ga0306926_124961731 | 3300031954 | Soil | MSAIPDSTLADCQQLTTDLQRQLAECRAERDAARTFPPP |
Ga0306926_127378151 | 3300031954 | Soil | MSPIPDSTLADCEQLVADLQRQLAECRAERDEALEYQTATSDVLQV |
Ga0318530_102798711 | 3300031959 | Soil | MSAIPDSTLADAEQIIADLRRQLAECRAERDEALQRETA |
Ga0318531_101974762 | 3300031981 | Soil | MSATPDSTLAYSEQFVADLQRQLAECRAECDEALQRETATA |
Ga0306922_116460162 | 3300032001 | Soil | MSAPPDSTLADSKQLVADLQRQLAECRAERDEARQHQ |
Ga0306922_123393861 | 3300032001 | Soil | MSANPDSTLADCEQLVADLQRQLAECRAERDEAFEYQ |
Ga0318507_102310272 | 3300032025 | Soil | MSATPDSTLSDSGQLIADLQRQLAECRAERDEALQRETATAEI |
Ga0318549_101091824 | 3300032041 | Soil | MSAIPDSTLADCQQLVADLQRQLAECRAERDEALEYQ |
Ga0318556_101361411 | 3300032043 | Soil | MSAIPDSTLADCQQLVADLQRQLTECRAERDKALEYQTATSDV |
Ga0318558_105219011 | 3300032044 | Soil | MSAIPDSTLADCQQLLADLQRQLAECRAERDEALEYQ |
Ga0318532_100101511 | 3300032051 | Soil | MSATRDSTLADSQQLIADLQRQLAECRAERDEALEYQTATSDVLNV |
Ga0318532_100996081 | 3300032051 | Soil | MSAIPDSTLADCQQVVADLQRQLTECRAERDEALEYQTATSDVLNVISRSTADVQP |
Ga0318506_101885951 | 3300032052 | Soil | MSANPDSTLADCEQLVADLQRQLAECRAERDEALQYQTAT |
Ga0318575_103876612 | 3300032055 | Soil | MSPIPDSTLADCEQLVADLQRQLAECRAERDEALEYQTATSDVL |
Ga0318575_107110851 | 3300032055 | Soil | MSAMPEGTLAGSERLIADLQRQLDEALQRETANAEV |
Ga0318533_100240389 | 3300032059 | Soil | MSATHNSTLADCQQLVADLQRQLAECRAERDEALEYQTATSDVLKV |
Ga0318504_104417862 | 3300032063 | Soil | MSATPDSTLADSTLADCQKLVADLQRQLAECRAER |
Ga0318514_106880382 | 3300032066 | Soil | MSAPPDSTLADSKQLVADLQRQLAECRAERDEALQRETATAEVLRVINS |
Ga0318553_105286982 | 3300032068 | Soil | MNPTPDSTLADSEQLIADLRRQLAERTTERDEALEYQTAISDV |
Ga0306924_101103521 | 3300032076 | Soil | MNTTPDSTLADCEQLIADLQRQLAEYRAERDEAREYQTATSDVLNVISRS |
Ga0306924_116357861 | 3300032076 | Soil | MNATPDSTLADPAQLVADLQRQLAECRAERDEALEYQTATSDVLNVISRSTADV |
Ga0306924_124714952 | 3300032076 | Soil | MSAIPDSTLADWQQLVADLQRQLAECRAERDEALEYQTATSDVLK |
Ga0318518_105948451 | 3300032090 | Soil | MSAIPDSTLADCQQLVADLQRQLAECRVERDESLEYQTATSEVLNVISRSTADV |
Ga0318577_103000911 | 3300032091 | Soil | MSAIPDSTLADSEQLIADLQRQLAECRAERDEALEY |
Ga0318540_100711211 | 3300032094 | Soil | MSATPDSALTNPEQLVADLQRQLGECKAERDEALEQQTATAEVLQVI |
Ga0306920_1013082503 | 3300032261 | Soil | MSAIPDSTLADCQQLVADLQRQLAECRAERDEALEYQTATSDVLN |
Ga0348332_117632831 | 3300032515 | Plant Litter | MSATPDSTLADCEQLVADLRHQLAGCRAERDEALEYQTATS |
Ga0310914_106540711 | 3300033289 | Soil | MSPIPNSTLADSQQLIADLQRQLAECRAERDEALQRETATAEVL |
Ga0310914_112462241 | 3300033289 | Soil | MSATRDSTLADSEQLIADLQCQLAECRAERDEALEYQTATSDVLNVISRSTADVQPV |
Ga0318519_109387811 | 3300033290 | Soil | MRTMPASTLADSEQFIADLQRQLAECRAERDEAREYQTAT |
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