Metagenome / Metatranscriptome Family F060130

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F060130
Family Type	Metagenome / Metatranscriptome
Number of Sequences	133
Average Sequence Length	93 residues
Representative Sequence	MKALMIGVGLAAIVTPALADFYIIQEPTTKRCRIVEERPAPNAGIIIGGAGFGVRLEAENRMRTIEVCKETTGSGGPAVIEERRERVIRER
Number of Associated Samples	87
Number of Associated Scaffolds	133

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	66.17 %
% of genes near scaffold ends (potentially truncated)	35.34 %
% of genes from short scaffolds (< 2000 bps)	83.46 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.24

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (97.744 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (20.301 % of family members)
Environment Ontology (ENVO)	Unclassified (36.842 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (45.865 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 16.81% β-sheet: 26.05% Coil/Unstructured: 57.14%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.24
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.24
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 133 Family Scaffolds
PF02775	TPP_enzyme_C	41.35
PF16326	ABC_tran_CTD	6.77
PF01209	Ubie_methyltran	3.01
PF02776	TPP_enzyme_N	2.26
PF00128	Alpha-amylase	2.26
PF08241	Methyltransf_11	1.50
PF07883	Cupin_2	1.50
PF06296	RelE	1.50
PF01381	HTH_3	1.50
PF00589	Phage_integrase	0.75
PF03466	LysR_substrate	0.75
PF04280	Tim44	0.75
PF00111	Fer2	0.75
PF04338	DUF481	0.75
PF02913	FAD-oxidase_C	0.75
PF05239	PRC	0.75
PF07690	MFS_1	0.75
PF00958	GMP_synt_C	0.75

COG ID	Name	Functional Category	% Frequency in 133 Family Scaffolds
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	3.01
COG2227	2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase	Coenzyme transport and metabolism [H]	3.01
COG0296	1,4-alpha-glucan branching enzyme	Carbohydrate transport and metabolism [G]	2.26
COG0366	Glycosidase/amylase (phosphorylase)	Carbohydrate transport and metabolism [G]	2.26
COG1523	Pullulanase/glycogen debranching enzyme	Carbohydrate transport and metabolism [G]	2.26
COG3280	Maltooligosyltrehalose synthase	Carbohydrate transport and metabolism [G]	2.26
COG4737	Uncharacterized conserved protein	Function unknown [S]	1.50
COG0277	FAD/FMN-containing lactate dehydrogenase/glycolate oxidase	Energy production and conversion [C]	0.75
COG0519	GMP synthase, PP-ATPase domain/subunit	Nucleotide transport and metabolism [F]	0.75
COG3137	Putative salt-induced outer membrane protein YdiY	Cell wall/membrane/envelope biogenesis [M]	0.75
COG4395	Predicted lipid-binding transport protein, Tim44 family	Lipid transport and metabolism [I]	0.75

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	97.74 %
Unclassified	root	N/A	2.26 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	97.74 %
Unclassified	root	N/A	2.26 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	97.74 %
Unclassified	root	N/A	2.26 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	96.24 %
Unclassified	root	N/A	2.26 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	89.47 %
Unclassified	root	N/A	2.26 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.75 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.75 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	59.40 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	18.05 %
Unclassified	root	N/A	2.26 %
Moraxellales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales	0.75 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.75 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	18.05 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	16.54 %
Unclassified	root	N/A	2.26 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.75 %
Moraxellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae	0.75 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	18.05 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.76 %
Unclassified	root	N/A	2.26 %
Afipia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	1.50 %
Burkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	0.75 %
Nitrobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter	0.75 %
Acinetobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter	0.75 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	18.05 %
Unclassified	root	N/A	2.26 %
unclassified Afipia	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → unclassified Afipia	1.50 %
unclassified Nitrobacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → unclassified Nitrobacter	0.75 %
Bradyrhizobium diazoefficiens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	0.75 %
Acinetobacter calcoaceticus/baumannii complex	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex	0.75 %
Burkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	0.75 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	18.05 %
Unclassified	root	N/A	2.26 %
Afipia sp. OHSU_II-uncloned	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → unclassified Afipia → Afipia sp. OHSU_II-uncloned	1.50 %
Nitrobacter sp. Nb-311A	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → unclassified Nitrobacter → Nitrobacter sp. Nb-311A	0.75 %
Acinetobacter baumannii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii	0.75 %
Bradyrhizobium diazoefficiens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	0.75 %
Burkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	0.75 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002568\|C688J35102_119446401	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	696	Open in IMG/M
3300002568\|C688J35102_120951133	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2904	Open in IMG/M
3300004633\|Ga0066395_10586357	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	652	Open in IMG/M
3300005180\|Ga0066685_10758245	All Organisms → cellular organisms → Bacteria → Proteobacteria	661	Open in IMG/M
3300005184\|Ga0066671_10427061	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	850	Open in IMG/M
3300005332\|Ga0066388_100034489	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4850	Open in IMG/M
3300005332\|Ga0066388_100100846	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3350	Open in IMG/M
3300005332\|Ga0066388_100179491	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2724	Open in IMG/M
3300005332\|Ga0066388_100305848	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2235	Open in IMG/M
3300005332\|Ga0066388_101145616	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1322	Open in IMG/M
3300005332\|Ga0066388_101257243	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1272	Open in IMG/M
3300005332\|Ga0066388_101517109	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1173	Open in IMG/M
3300005332\|Ga0066388_103533881	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	798	Open in IMG/M
3300005544\|Ga0070686_101735843	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	530	Open in IMG/M
3300005598\|Ga0066706_11029091	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	633	Open in IMG/M
3300005615\|Ga0070702_100557036	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	852	Open in IMG/M
3300005713\|Ga0066905_100013975	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3988	Open in IMG/M
3300005713\|Ga0066905_100031433	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3017	Open in IMG/M
3300005713\|Ga0066905_100929746	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	763	Open in IMG/M
3300005764\|Ga0066903_100769622	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1714	Open in IMG/M
3300005764\|Ga0066903_109134389	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	501	Open in IMG/M
3300005937\|Ga0081455_10089601	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2496	Open in IMG/M
3300005983\|Ga0081540_1037087	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2589	Open in IMG/M
3300006032\|Ga0066696_10456956	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	837	Open in IMG/M
3300006038\|Ga0075365_10153029	All Organisms → cellular organisms → Bacteria → Proteobacteria	1605	Open in IMG/M
3300006038\|Ga0075365_10389026	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	984	Open in IMG/M
3300006178\|Ga0075367_10113198	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1667	Open in IMG/M
3300006845\|Ga0075421_100993377	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	951	Open in IMG/M
3300006847\|Ga0075431_102164513	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	511	Open in IMG/M
3300006853\|Ga0075420_100820711	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	801	Open in IMG/M
3300006854\|Ga0075425_102111555	All Organisms → cellular organisms → Bacteria → Proteobacteria	629	Open in IMG/M
3300006953\|Ga0074063_12087309	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	628	Open in IMG/M
3300006954\|Ga0079219_11088225	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	676	Open in IMG/M
3300007076\|Ga0075435_100439817	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1124	Open in IMG/M
3300007788\|Ga0099795_10022222	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2091	Open in IMG/M
3300009012\|Ga0066710_101931139	All Organisms → cellular organisms → Bacteria → Proteobacteria	881	Open in IMG/M
3300009137\|Ga0066709_102524203	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	692	Open in IMG/M
3300009792\|Ga0126374_10254780	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1148	Open in IMG/M
3300010043\|Ga0126380_10521678	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	917	Open in IMG/M
3300010043\|Ga0126380_10824713	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	762	Open in IMG/M
3300010046\|Ga0126384_10588214	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	972	Open in IMG/M
3300010046\|Ga0126384_11977202	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	557	Open in IMG/M
3300010047\|Ga0126382_10042397	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2600	Open in IMG/M
3300010047\|Ga0126382_10134043	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1668	Open in IMG/M
3300010047\|Ga0126382_10534403	All Organisms → cellular organisms → Bacteria → Proteobacteria	950	Open in IMG/M
3300010147\|Ga0126319_1529021	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	519	Open in IMG/M
3300010358\|Ga0126370_10005982	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6168	Open in IMG/M
3300010359\|Ga0126376_11936001	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	630	Open in IMG/M
3300010360\|Ga0126372_10492784	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1148	Open in IMG/M
3300010360\|Ga0126372_10500683	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1141	Open in IMG/M
3300010360\|Ga0126372_11732674	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	667	Open in IMG/M
3300010362\|Ga0126377_10021833	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5284	Open in IMG/M
3300010362\|Ga0126377_10098937	Not Available	2656	Open in IMG/M
3300010362\|Ga0126377_10837069	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	980	Open in IMG/M
3300010362\|Ga0126377_11085878	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	869	Open in IMG/M
3300010362\|Ga0126377_11625108	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	721	Open in IMG/M
3300010362\|Ga0126377_11853612	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	679	Open in IMG/M
3300010362\|Ga0126377_12707301	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	571	Open in IMG/M
3300010366\|Ga0126379_12383084	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	629	Open in IMG/M
3300010398\|Ga0126383_10768180	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1045	Open in IMG/M
3300010400\|Ga0134122_11839216	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	639	Open in IMG/M
3300010403\|Ga0134123_10299084	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1426	Open in IMG/M
3300012199\|Ga0137383_10284028	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1212	Open in IMG/M
3300012200\|Ga0137382_10402950	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	964	Open in IMG/M
3300012200\|Ga0137382_10438243	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	924	Open in IMG/M
3300012200\|Ga0137382_10922057	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	629	Open in IMG/M
3300012206\|Ga0137380_11762436	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → unclassified Afipia → Afipia sp. OHSU_II-uncloned	503	Open in IMG/M
3300012207\|Ga0137381_11510485	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	563	Open in IMG/M
3300012208\|Ga0137376_10753897	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	839	Open in IMG/M
3300012211\|Ga0137377_10410641	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1292	Open in IMG/M
3300012212\|Ga0150985_103212689	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	794	Open in IMG/M
3300012212\|Ga0150985_104505213	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	557	Open in IMG/M
3300012212\|Ga0150985_108255547	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	503	Open in IMG/M
3300012212\|Ga0150985_111898922	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1850	Open in IMG/M
3300012212\|Ga0150985_112493250	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	767	Open in IMG/M
3300012212\|Ga0150985_120136824	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	958	Open in IMG/M
3300012212\|Ga0150985_121814335	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	513	Open in IMG/M
3300012349\|Ga0137387_10281082	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1202	Open in IMG/M
3300012349\|Ga0137387_10706097	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	730	Open in IMG/M
3300012357\|Ga0137384_10058251	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3201	Open in IMG/M
3300012360\|Ga0137375_10121349	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2611	Open in IMG/M
3300012469\|Ga0150984_104339444	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	511	Open in IMG/M
3300012469\|Ga0150984_104659282	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	597	Open in IMG/M
3300012469\|Ga0150984_107863551	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1236	Open in IMG/M
3300012469\|Ga0150984_112692274	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1500	Open in IMG/M
3300012469\|Ga0150984_118563984	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1295	Open in IMG/M
3300012922\|Ga0137394_10107548	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2353	Open in IMG/M
3300012925\|Ga0137419_10278412	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1271	Open in IMG/M
3300012930\|Ga0137407_11024798	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	782	Open in IMG/M
3300012948\|Ga0126375_10096533	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1738	Open in IMG/M
3300012948\|Ga0126375_10374207	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	1020	Open in IMG/M
3300012948\|Ga0126375_10611588	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	834	Open in IMG/M
3300012971\|Ga0126369_11051262	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	903	Open in IMG/M
3300012971\|Ga0126369_13345854	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	525	Open in IMG/M
3300012986\|Ga0164304_11890760	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	500	Open in IMG/M
3300013297\|Ga0157378_10377658	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1391	Open in IMG/M
3300015242\|Ga0137412_10260505	All Organisms → cellular organisms → Bacteria	1370	Open in IMG/M
3300015264\|Ga0137403_10853945	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	762	Open in IMG/M
3300017944\|Ga0187786_10413066	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii	589	Open in IMG/M
3300018028\|Ga0184608_10130374	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1072	Open in IMG/M
3300018032\|Ga0187788_10306366	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	645	Open in IMG/M
3300018066\|Ga0184617_1189841	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	611	Open in IMG/M
3300018468\|Ga0066662_10666458	Not Available	986	Open in IMG/M
3300018468\|Ga0066662_11933939	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	617	Open in IMG/M
3300019254\|Ga0184641_1147173	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	565	Open in IMG/M
3300019789\|Ga0137408_1328904	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1253	Open in IMG/M
3300020170\|Ga0179594_10153761	Not Available	851	Open in IMG/M
3300021078\|Ga0210381_10009560	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2311	Open in IMG/M
3300025900\|Ga0207710_10040402	All Organisms → cellular organisms → Bacteria → Proteobacteria	2067	Open in IMG/M
3300027903\|Ga0209488_11227347	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → unclassified Nitrobacter → Nitrobacter sp. Nb-311A	503	Open in IMG/M
3300027907\|Ga0207428_10111111	All Organisms → cellular organisms → Bacteria	2109	Open in IMG/M
3300027909\|Ga0209382_11098293	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	821	Open in IMG/M
3300028536\|Ga0137415_10138857	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2270	Open in IMG/M
3300028719\|Ga0307301_10074702	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1060	Open in IMG/M
3300028802\|Ga0307503_10396553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	720	Open in IMG/M
3300030830\|Ga0308205_1007357	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1050	Open in IMG/M
3300030902\|Ga0308202_1087991	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	626	Open in IMG/M
3300030903\|Ga0308206_1037880	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	909	Open in IMG/M
3300030903\|Ga0308206_1041438	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	881	Open in IMG/M
3300030905\|Ga0308200_1168631	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	517	Open in IMG/M
3300031091\|Ga0308201_10401612	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	515	Open in IMG/M
3300031094\|Ga0308199_1155742	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → unclassified Afipia → Afipia sp. OHSU_II-uncloned	547	Open in IMG/M
3300031198\|Ga0307500_10027777	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1262	Open in IMG/M
3300031198\|Ga0307500_10044034	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1057	Open in IMG/M
3300031716\|Ga0310813_10852604	All Organisms → cellular organisms → Bacteria → Proteobacteria	823	Open in IMG/M
3300031740\|Ga0307468_100141589	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1525	Open in IMG/M
3300031740\|Ga0307468_100679956	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	856	Open in IMG/M
3300032174\|Ga0307470_10450068	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	926	Open in IMG/M
3300032174\|Ga0307470_10890924	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	698	Open in IMG/M
3300032180\|Ga0307471_100194909	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2019	Open in IMG/M
3300032180\|Ga0307471_101595658	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	809	Open in IMG/M
3300032205\|Ga0307472_100809252	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	857	Open in IMG/M
3300033551\|Ga0247830_11594957	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	522	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	80.45%
Host-Associated	Host-Associated	19.55%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	76.69%
Plants	Host-Associated → Plants	19.55%
Aquatic	Environmental → Aquatic	3.76%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	76.69%
Rhizosphere	Host-Associated → Plants → Rhizosphere	10.53%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.77%
Freshwater	Environmental → Aquatic → Freshwater	2.26%
Roots	Host-Associated → Plants → Roots	2.26%
Sediment	Environmental → Aquatic → Sediment	1.50%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	61.65%
Loam	Environmental → Terrestrial → Soil → Loam	13.53%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.77%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	5.26%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.76%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	2.26%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.50%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.50%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.50%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	48.87%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.53%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.77%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.02%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.26%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	5.26%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.76%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	2.26%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.50%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.50%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.50%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.50%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.75%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.75%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.75%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	20.30%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	16.54%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	10.53%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.77%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.26%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	5.26%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.26%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	3.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.01%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.01%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	2.26%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.50%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.50%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.50%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.50%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.50%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	1.50%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.75%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.75%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.75%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.75%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.75%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300005983	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006178	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010147	Soil microbial communities from California, USA to study soil gas exchange rates - BB-CA-RED metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017944	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_10_20_MG	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018032	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP10_20_MG	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019254	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028719	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300030830	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_368 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030902	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_356 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030903	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_369 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030905	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_204 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031094	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_203 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031198	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 14_S	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
C688J35102_1194464011	3300002568	Soil	MKALMIGVGLAAIATPALADFYIIQEPTTKRCRIVEERPAPNSGVIIGGGGFGVRVEAENRMRTIEVCREGTTGRRDRDEVIEERRERVIVPER*
C688J35102_1209511333	3300002568	Soil	MKALMIGVGLAAIVTPALADFYIIQEPTTKRCRIVEERPAPNAGIIVGGSGFGVRVEAENRMRTVEVCKETTGRGGPAVIEERRERVIPEERRERVIVPER*
Ga0066395_105863571	3300004633	Tropical Forest Soil	MKALMIGVGLAAIATPALADFYIIQEPTTKRCRIVEERPAPSAGVIIGGNGFGVRVEAENRMRTIEVFKETTGSGGPAVIEERRERVIRER*
Ga0066685_107582451	3300005180	Soil	MKALMIGVGLAAIATPALADFYIIQEPTTRRCRIVEERPAPNAGIIIGGGGFGVRVEAENRMRTIEVCREGTTGRGDPDEVIIERRERTIRER*
Ga0066671_104270612	3300005184	Soil	MKKLLAIAALVTAATPALADFWIVQEPTTKHCRIVEERPAPGAGVVIGDRFGVRVEAETHMKTVEVCREGTVGGPARPDVRIEERERIPPR*
Ga0066388_1000344892	3300005332	Tropical Forest Soil	MKALMIGVGLAAIATPALADFYIIQEPTTRRCRIVEERPAPNAGIIIGGNGFGVRVEAENRMRTIEVCKETTGRRDRDEVIEERRERVIIPQR*
Ga0066388_1001008464	3300005332	Tropical Forest Soil	MKALMIGVGLAAIATPALADFYIIQEPTTKRCRIVEQRPAPNVGVVIGGNGFPVRVEAENRMRTIEVCKETSGSGGPAVIEERRERVIVPER*
Ga0066388_1001794913	3300005332	Tropical Forest Soil	MKALMIGVGLAAIATPALADFYIIQEPTTKRCRIVEERPAPNVGIVIGGGGFPVRVEAENRMRTVEVCKETSGRGGPAVIEERRERVIVPER*
Ga0066388_1003058485	3300005332	Tropical Forest Soil	MKAILAGTVLATLLVAPAFADFYIIQEPSTKRCRIVEERPAPGVGVVIGAPFGVRVEAENRMRTVEVCREGTTGRGDVIIEENRRLKER*
Ga0066388_1011456162	3300005332	Tropical Forest Soil	MKALMIGVGLAAIATPALADFYIIQEPTTKRCRIVEERPAPSAGVIIGGNGFGVRVEAENRMRTIEVCKETTGSGGPAVIEERRERVIRER*
Ga0066388_1012572431	3300005332	Tropical Forest Soil	MKALMIGVGLAAIATPALADFYIIQEPTTKRCRIVEERPAPNVGVIIGGGGFPVRIEAENRMRTVEVCKETTGRGGP
Ga0066388_1015171091	3300005332	Tropical Forest Soil	MKALMIGVGLAAIATPALADFYIIQEPTTKRCRIVEERPAPNAGLIIGGAGFGVRVEAENRMRTIEVCREGTTGRRDGDVIIEERRERTIRER*
Ga0066388_1035338811	3300005332	Tropical Forest Soil	MKALMIGVGLAAIVTPALADYYIIQEPTTKRCRIIEERPAPSAGIIIGGSGFGVRVEAENRMRTIEVCREGTTGRRDRDVIEERREERIIRER*
Ga0070686_1017358431	3300005544	Switchgrass Rhizosphere	ADYYIIQEPTTKRCRIVEERPAPNAGIIIGGAGFGVRLEAENRMRTIEVCKETTGSGGPVIIEERRDRVIRER*
Ga0066706_110290911	3300005598	Soil	DMKALMIGVGLVAIATPALADFYIIQEPTTKRCRIVEERPAPNAGVIIGGGGFGVRVEAENRMRTIEVCREGTTGRRDRDDVIEERRERVIIPER*
Ga0070702_1005570362	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MKALMIGVGLAAIVTPALADYYIIQEPTTKRCRIVEERPAPNAGIIIGGAGFGVRLEAENRMRTIEVCKETTGSGGPVIIEERRDRVIRER*
Ga0066905_1000139755	3300005713	Tropical Forest Soil	MKALMIGVGLAAIATPALADFYIIQEPTTKRCRIVEERPTPSIGIIIGGGGFPVRVEAENRMRTIEVCRETSGRGGPAVIEERRERVIVPER*
Ga0066905_1000314332	3300005713	Tropical Forest Soil	MKALMIGVGLAAIATPALADFYIIQEPTTKRCRIVEQRPAPNVGVVIGGGGFPVRIEAENRMRTIEVCKETSGSGGPAVIEERRERVIVPER*
Ga0066905_1009297462	3300005713	Tropical Forest Soil	MKALMIGVGLAAIAKRCRIVEERPAPNAGIIIGGAGFGVRVEAENRMRTIEVCREGTTGRRDGDVIIEERRERTIRER*
Ga0066903_1007696222	3300005764	Tropical Forest Soil	MMKALMIGVGLAAIATPALADFYIIQEPTTKRCRIVEERPAPSAGVIIGGNGFGVRVEAENRMRTIEVCKETTGSGGPAVIEERRERVIRER*
Ga0066903_1091343891	3300005764	Tropical Forest Soil	MIGVGLAAIATPALADYYIIQEPTTRRCRIVEERPAPNLGVIIGGGGFGVRVEAENRMRTIEVCREGTTGRRDGDVIIEERRERTIRER*
Ga0081455_100896014	3300005937	Tabebuia Heterophylla Rhizosphere	MKALLIGVGLAAIATPALADFYIIQEPTTKRCRIVEQRPAPNVGIVIGGGGFPVRIEAENRMRTIEVCRETSGSGGPAVIEERRERVIIPER*
Ga0081540_10370872	3300005983	Tabebuia Heterophylla Rhizosphere	MKALMIGVGLAAIATPALADFYIIQEPTTKRCRIVEERPAPTVGIIIGGGGFPVRVEAENRMRTIEVCRETSGRGGPAVIEERRERVIVPER*
Ga0066696_104569561	3300006032	Soil	MKAFVVAAAMAAWVTPALADYYIIQEPTTKRCLIVEERPAPGVGIVIGERGFGVRTEAESRMRTVEVCREGTSGGPVIREERQERVIPERR*
Ga0075365_101530292	3300006038	Populus Endosphere	MKALLAAAALTTFVTPALADYYIIQEPTTKRCRIVEERPAPGVGVVIGAPFGVLVEAESRMRTVEVCREGTTGGPAVIEERRERVIRER*
Ga0075365_103890261	3300006038	Populus Endosphere	MERDMKVFIVAATLAACITPALADYYIIQESTTKRCRIVEERPAPGIGIVIGEGGFGVRAEAESRMRTVEVCREGTSGGPVIREERRERIVPER*
Ga0075367_101131981	3300006178	Populus Endosphere	MKALMIGVGLAAIVTPALADFYIIQEPTTKRCRIVEERPAPNVGIVIGGSGFPVRVEAENRMRTVEVCKETTGRGGPAVIEER
Ga0075421_1009933772	3300006845	Populus Rhizosphere	MKSLLIGAAVATMFATNAVADFYIVQEPTTKRCRIVEERPAPNIGIIIGDRGFGVRADAETHLRTVEVCRETTTGGGVTIEERGRVRER*
Ga0075431_1021645132	3300006847	Populus Rhizosphere	MKSLLIGAAVATMFATNAVADFYIVQEPTTKRCRIVEERPASNIGIIIGDRGFGVRTDAETHMRTVEVCRETTTGGGVTIEERGRVKER*
Ga0075420_1008207112	3300006853	Populus Rhizosphere	MKSLLIGAAAATMFATNAVADFYIVQEPTTKRCRIVEERPAPNIGIIIGDRGFGVRTDAETHMRTVEVCRETTTGGGVTIEERGRVRER*
Ga0075425_1021115552	3300006854	Populus Rhizosphere	MKALMIGVGLAAIVTPALADFYIIQEPTTKRCRIVEERPAPNVGIVIGGSGFPVRVEAENRMRTVEVCKETTGRGGPAVIEERRGPAVIEERRERVIVPER*
Ga0074063_120873092	3300006953	Soil	MKALMIGVGLAAIVTPALADYYIIQEPTTKRCRIVEERPAPNAGIIIGGAGFGVRLEAENRMRTVEVCKETTGSGGPVIIEERRERVIRER*
Ga0079219_110882252	3300006954	Agricultural Soil	MKALMIGVGLAAIVTPALADFYIIQEPTTKRCRIVEQRPAPNAGVIIGGSGFGVRVEAENRMRTIEVCKETTGSGGPAVIEERRERVIRER*
Ga0075435_1004398172	3300007076	Populus Rhizosphere	MKALMIGVGLAAIVTPALADFYIIQEPTTKRCRIVEERPAPSVGVVIGGSGFPVRVEAENRMRTVEVCKETTGRGGPAVIEERRGPA
Ga0099795_100222222	3300007788	Vadose Zone Soil	MKALMIGVGLAAIVTPALADFYIIQEPTTKRCRIVEERPAPNAGIIIGGAGFGVRVEAENRMRTVEVCREGTTGRRDRDEVIEERRERVIIPER*
Ga0066710_1019311391	3300009012	Grasslands Soil	MKALMIGVGLAAIATPALADFYIIQEPTTKRCRIVEERPAPSAGIILGGAGFGVRVEAENRMHTIEVCRETTGRRDRDEVIEERRE
Ga0066709_1025242032	3300009137	Grasslands Soil	MLGPSNEERNMKALMIGVGLAAIATPALADFYIIQEPTTKRCRIVEERPAPNVGVIIGGAGFGVRVEAENRMRTIEVCREGTTGRRDRDDVIEERRERVIIPER*
Ga0126374_102547802	3300009792	Tropical Forest Soil	MKALMIGVGLAAIATPALADYYIIQEPTTRRCRIIEERPAPSAGVIIGGGGFGVRVEAENRMRTIEVCREGTTGRRDRDVIEERREERIIRER*
Ga0126380_105216781	3300010043	Tropical Forest Soil	MKALMIGVGLAAIATPALADFYIIQEPTTKSCRIVEQRPAPNVGVVIGGGGFPVRIEAENRMRTIEVCKETSGSGGPAVIEERRERVIVPER*
Ga0126380_108247132	3300010043	Tropical Forest Soil	MKALLIGVGLAAIATPALADFYIIQEPTTKRCRIVEERPTPNVGIVIGGSGFPVRVEAENRMRTIEVCKETSGSGGPAVIEERRERVIRER*
Ga0126384_105882142	3300010046	Tropical Forest Soil	MERTMKALMIGVGLAAIATPALADFYIIQEPTTKRCRIVEERPAPNLGIIIGGGGFPVRIEAENRMRTIEVCRETSGRGGPAVIEERRERVIVPER*
Ga0126384_119772021	3300010046	Tropical Forest Soil	MKAMLAGAALAAVFVTPSFADFYIIQEPTTKRCRIVEQRPAPSVGVVIGDGFPVRVEAENRLRTVEVCREGTTGRAPEGGVIIEKRERIQER*
Ga0126382_100423972	3300010047	Tropical Forest Soil	MKALMIGVGLAAIATPALADFYIIQESTTKRCRIVEERPAPNAGIIIGGAGFGVRVEAENRMRTIEVCREGTTGRRDGDVIIEERRERTIRER*
Ga0126382_101340432	3300010047	Tropical Forest Soil	MELVSTLGPSNEERNMKALMIGVGLAAIATPALADFYIIQEPTTKRCRIVEQRPAPNVGVVIGGGGFPVRIEAENRMRTIEVCKETSGSGGPAVIEERRERVIVPER*
Ga0126382_105344032	3300010047	Tropical Forest Soil	LGPSNEERNMKALMIGVGLAAIATPALADFYIIQEPTTKRCRIVEERPAPNVGIVIGGGGFPVRVEAENRMRTVEVCKETSGRGGPAVIEERRERVIVPER*
Ga0126319_15290212	3300010147	Soil	ECHLMKSILAGIALAAAAVTPALADFYIIQDPGTKRCRIVEERPAPGIGIVIGDRFGVRLEAENRMRTVEVCREGTTGRGGDVIIEERDGRGRER*
Ga0126370_100059823	3300010358	Tropical Forest Soil	MKALMIGVGLAAIATPALADYYIIQEPTTRRCRIVEERPAPNLGVIIGGGGFGVRVEAENRMRTIEVCREGTTGRRDGDVIIEERRERTIRER*
Ga0126376_119360012	3300010359	Tropical Forest Soil	MKALMIGVGLAAIVTPALADFYIIQEPTTKRCRIVEERPAPNAGVIIGGSGFGVRVEAENRMRTIEVCKETTGRGGPAVIEERRERVIPEERRERVIVPER*
Ga0126372_104927841	3300010360	Tropical Forest Soil	ALADYYIIQEPTTKRCRIIEERPAPSAGIIIGGSGFGVRVEAENRMRTIEVCREGTTGRRDRDVIEERREERIIRER*
Ga0126372_105006832	3300010360	Tropical Forest Soil	METDMKALMIGVGLAAIATPALADFYIIQEPTTRRCRIVEQRPAPNVGVIIGGGGFGVRVEAENRMRTIEVCREGTTGRRDGDVIIEERRERTIRER*
Ga0126372_117326742	3300010360	Tropical Forest Soil	MKALMIGVGLAAIVTPALADFYIIQEPTTRRCRIVEERPAPSAGVIIGGNGFGVRVEAENRMRTIEVCRETTGRRDRDEVIEERRERVIIPGR*
Ga0126377_100218336	3300010362	Tropical Forest Soil	MMKALMIGVGLAAIATPALADFYIIQEPTTKRCRIVEERPAPNVGVIIGGGGFPVRIEAENRMRTVEVCKETTGRGGPAVIEERRERVIPEERRERVIVPER*
Ga0126377_100989372	3300010362	Tropical Forest Soil	MKALLIGVGLAAIATPALADFYIIQEPTTKRCRIVEQRPAPSVGIVIGGGGFPVRIEAENRMRTIEVCRETSGSGGPAVIEERRERVIIPER*
Ga0126377_108370691	3300010362	Tropical Forest Soil	MKAMLAGAALAAVFVTPSFADFYIIQEPSTKRCRIVEQRPAPSVGVVIGDGFPVRVEAENRMRTVEVCHEGTSGRAPSGDVIIEKRERV
Ga0126377_110858782	3300010362	Tropical Forest Soil	EERNMKALMIGVGLAAIATPALADFYIIQEPTTKRCRIVEERPAPTVGIIIGGSGFPVRVEAENRMRTIEVCRETSGRGGPAVIEERRERVIVPER*
Ga0126377_116251081	3300010362	Tropical Forest Soil	IATPALADFYIIQEPTTKRCRIVEERPAPNAGIIIGGAGFGVRVEAENRMRTIEVCREGTTGRRDGDVIIEERRERTIRER*
Ga0126377_118536121	3300010362	Tropical Forest Soil	MKALMIGVGLAAIATPALADFYIIQEPTTKRCRIVEERPAPSAGIIIGGNGFGVRVEAENRMRTIEVCKETTGRRDRDEVIEERRERVIIPER*
Ga0126377_127073012	3300010362	Tropical Forest Soil	MKALLIGVGLAAIATPALADFYIIQEPTTKRCRIVEERPAPTVGIIIGGGGFPVRVEAENRMRTIEVCRETSGRGGPAVIEERRERVIVPER*
Ga0126379_123830841	3300010366	Tropical Forest Soil	TPALADYYIIQEPTTKRCRIVEERPRPNAGIIIGGGGFGVRVEAENRMRTVEVCREGTTGRRDRGVIEERREERIIRER*
Ga0126383_107681802	3300010398	Tropical Forest Soil	MKALMIGVGLAAIATPALADFYIIQEPTTRRCRIVEERPTPSVGVIIGGGGFPVRVEAENRMRTIEVCREGTTGRRDPDDVIIERRERIIRER*
Ga0134122_118392161	3300010400	Terrestrial Soil	NMKALMIGVGLAAIVTPALADYYIIQEPTTKRCRIVEERPAPNAGIIIGGAGFGVRLEAENRMRTIEVCKETTGSGGPVIIEERRDRVIRER*
Ga0134123_102990842	3300010403	Terrestrial Soil	MKALMIGVGLAAIVTPALADYYIIQEPTTKRCRIVEERPAPNAGIIIGGAGFGVRLEAENRMRTIEVCKETTGSDGPVIIEERRDRVIRER*
Ga0137383_102840281	3300012199	Vadose Zone Soil	IRCGTFLDDPTTSRCRFLADFYIIQEPTTRRCRIVEERPAPNAGIIIGGGGFGVRVEAENRMRTIEVCREGTSGRRDRDDVIEERRERVIIPER*
Ga0137382_104029502	3300012200	Vadose Zone Soil	VGNLTDLELVGRLGPSNEETDMKALMIGVGLVVIATPALADFYIIQEPTTRRCRIVEERPAPNMGVIIGGAGFGVRVEAENRMRTSEVCREGTSGTRDRDDVIEERRERVIIPER*
Ga0137382_104382431	3300012200	Vadose Zone Soil	VSIAPRKVGNLTDLELVGRLGPSNEEIDMKALMIGVGLVAIATPALADFYIIQEPTTKRCRIVEERPAPNVGVIIGGAGFGVRVEAENRMRTIEVCREGTTGRRDRDDVIEERRERVIIPER*
Ga0137382_109220572	3300012200	Vadose Zone Soil	MKALMIGVGLAAIVTPALADFYIIQEPTTKRCRIVEERPAPNVGVIIGGAGFGVRVEAENRMRTVEVCREGTTGRRDRDEVIEERRERVIIPER*
Ga0137380_117624361	3300012206	Vadose Zone Soil	VGNLTDLELVGRLGPSNEEIDMKALMIGVGLVAIATPALADFYIIQEPTTKRCRIVEERPAPNVGVIIGGAGFGVRVEAENRMRTIEVCREGTTGRRDRDDVIEERRERVIIPER*
Ga0137381_115104851	3300012207	Vadose Zone Soil	TAMKALMIGVGLVAIATPALADFYIIHEPTTKRCRFVEEQPAPSVGVIIGGAGFGVRVEAENRMRTIEVCREGTTGRRDRDDVIEERRERVIIPER*
Ga0137376_107538972	3300012208	Vadose Zone Soil	MKALMIGVGLVAIATPALADFYIIQEPTTRRCRIVEERPAPNMGVIIGGAGFGVRVEAENRMRTIEVCREGTSGTRDRDDVIEERRERVIIPER*
Ga0137377_104106412	3300012211	Vadose Zone Soil	MKALMIGVGLVAIATPALADFYIIQEPTTKRCRIVEERPAPSVGVIIGGAGFGVRVEAENRMRTIEVCREGTSGRRDRDDVIEERRERVIIPER*
Ga0150985_1032126891	3300012212	Avena Fatua Rhizosphere	PALADYYIVQEPSTKRCRIVEERPAPNIGVVIGAPFGARVEAESRMRTVEVCREGTTGGPAVIEERRERVVPER*
Ga0150985_1045052132	3300012212	Avena Fatua Rhizosphere	RNMKALMIGVGLAAIATPALADFYIIQEPTTKRCRIVEERPAPNSGVIIGGGGFGVRVEAENRMRTIEVCREGTTGRRDRDEVIEERRERVIVPER*
Ga0150985_1082555471	3300012212	Avena Fatua Rhizosphere	IQEPTTKRCRIVEERPAPNAGVIIGGAGFGVRVEAENRMRTVEVCKETTGRGGPAVIEERRERVVPEERRERVIVPER*
Ga0150985_1118989221	3300012212	Avena Fatua Rhizosphere	MKALLAVAALATFVTPAFADYYIVQEPSTKRCRIVEERPAPNIGVVIGAPFGARVEAENRMRTVEVCREGTTGGPAVIEERRERVVPER*
Ga0150985_1124932502	3300012212	Avena Fatua Rhizosphere	MPLSAITMMIGVGLAAIVTPALADFYIIQEPTTKRCRIVEERPAPNAGIIVGGSGFGVRVEAENRMRTVEVCKETTGRGGPAVIEERRERVIPEERRERVIVPER*
Ga0150985_1201368241	3300012212	Avena Fatua Rhizosphere	KESEMKTLIVAAALAAWITPALADYYIIQEPTTKRCRIVEERPASGAGIVIGESGFGVRAEAETRMRTVEVCREGTTGGPAIREERRERVVPER*
Ga0150985_1218143351	3300012212	Avena Fatua Rhizosphere	RRENMKALMIGVGLAAIVTPALADFYIVQEPTTKRCRIVEQRPAPNAGIIVGGAGFGVRVEAENRMRTIEVCKETTGRGGPEVIEERRGPAVIEERRERVVPER*
Ga0137387_102810822	3300012349	Vadose Zone Soil	MKALMIGVGLVAIATPALADFYIIQEPTTKRCRIVEERPAPNVGVIIGGAGFGVRVEAENRMRTIEVCREGTTGRRDRDDVIEERRERVIIPER*
Ga0137387_107060972	3300012349	Vadose Zone Soil	MKALMIGVGLAAIVTPALADFYIIQEPTTKRCRIVEERPAPSAGIIIGGAGFGVRVEAENRMRTVEVCREGTTGRRDRDEVIEERRERVIIPER*
Ga0137384_100582512	3300012357	Vadose Zone Soil	MKALMIGVGLVAIATPALADFYIIQEPTTKRCRIVEERPAPSVGVIIGGAGFGVRVEAENRMRTIEVCREGTTGRRDRDDVIEERRERVIIPER*
Ga0137375_101213491	3300012360	Vadose Zone Soil	MKALMIGVGLAAIVTPALADFYIIQEPTTKRCRIVEERPAPSAGIIIGGAGFGVRVEAENRMRTVEVCREGTTGRRDRDEVIEERRERVI
Ga0150984_1043394442	3300012469	Avena Fatua Rhizosphere	ALADYYIIQEPTTKRCRIVEERPAPSAGIIIGGNGFGVRVEAENRMRTIEVCREGTTGRRDRDEVIEERRERVIIPER*
Ga0150984_1046592822	3300012469	Avena Fatua Rhizosphere	RRENMKALMIGVGLAAIVTPALADFYIVQEPTTKRCRIVEQRPAPNAGIIVGGAVFGVRVEAENRMRTIEVCKETTGRGGPEVIEERRGPAVIEERRERVVPER*
Ga0150984_1078635511	3300012469	Avena Fatua Rhizosphere	MKTLIVAAALAAWITPALADYYIIQEPTTKRCRIVEERPASGAGIVIGESGFGVRAEAETRMRTVEVCREGTTGGPAIREERRERVVPER*
Ga0150984_1126922741	3300012469	Avena Fatua Rhizosphere	TRREEMKALMIGVGLAAIVTPALADFYIIQEPTTKRCRIVEERPAPNAGIIVGGSGFGVRVEAENRMRTVEVCKETTGRGGPAVIEERRERVIPEERRERVIVPER*
Ga0150984_1185639842	3300012469	Avena Fatua Rhizosphere	VEELNMKALLAVAALATFVTPAFADYYIVQEPSTKRCRIVEERPAPNIGVVIGAPFGARVEAENRMRTVEVCREGTTGGPAVIEERRERVVPER*
Ga0137394_101075484	3300012922	Vadose Zone Soil	MKALMIGVGLAAIVTPALADFYIIQEPTTKRCRIVEERPAPSVGVIIGGAGFGVRVEAENRMRTIEVCKETTGRGGPAVIEERGGPAVIEERRERVIVPER*
Ga0137419_102784122	3300012925	Vadose Zone Soil	MKALMIGVGLAAIVTPALADFYIIQEPTTKRCRIVEERPAPSAGVIIGGNGFGVRVEAENRMRTVEVCREGTTGRRDRDEVIEERRERVIIPER*
Ga0137407_110247982	3300012930	Vadose Zone Soil	MKALMIGVGLAAIATPALADFYIIQEPTTKRCRIVEERPAPTVGIIIGGSGFPVRVEAENRMRTIEVCKETTGRGPAVIEERRERVIVPER*
Ga0126375_100965332	3300012948	Tropical Forest Soil	MKALMIGVGLAAIATPALADFYIIQEPTTKRCRIVEERPAPNAGIIIGGAGFGVRVEAENRMRTIEVCREGTTGRRDGDVIIEERRERTIRER*
Ga0126375_103742073	3300012948	Tropical Forest Soil	MKALMIGVGLAAIATPALADFYIIQEPTTRRCRIVEQRPAPSAGIIIGGGGFGVRIEAENRMRTIEVCREGTTGRGDPDEVIIERRERIIRER*
Ga0126375_106115881	3300012948	Tropical Forest Soil	TSGPSNEERNMKALMIGVGLAAIATPALADFYIIQEPTTKRCRIVEERPAPSAGVIIGGNGFGVRVEAENRMRTIEVCKETTGRRDRDDVIEERRERVIRER*
Ga0126369_110512621	3300012971	Tropical Forest Soil	MIGVGLAAIATPALADFYIIQEPTTKRCRIVEERPAPSAGVIIGGNGFGVRVEAENRMRTIEVCKETTGSGGPAVIEERRERVIRER*
Ga0126369_133458542	3300012971	Tropical Forest Soil	MIGVGLAAIATPALADFYIIQEPTTKRCRIVEERPAPNAGLIIGGAGFGVRVEAENRMRTIEVCREGTTGRRDGDVIIEERRERTIRER*
Ga0164304_118907602	3300012986	Soil	AAIVTPALADYYIIQEPTTKRCRIVEERPAPNAGIIIGGAGFGVRLEAENRMRTIEVCKETTGSGGPVIIEERRDRVIRER*
Ga0157378_103776581	3300013297	Miscanthus Rhizosphere	MKALMIGVGLAAIVTPALADYYIIQEPTTKRCRIVEERTAPNAGIIIGGAGFGVRLEAENRMRTIEVCKETTGSGGPVIIEERRDRVIRER*
Ga0137412_102605052	3300015242	Vadose Zone Soil	SAALLALISPALADYYIIQEPTTKRCRIVEERPAPGVGVVIGDVFGVRVEAENRMRTVEVCREGTTGSRPPAVIEERERIRER*
Ga0137403_108539451	3300015264	Vadose Zone Soil	MKALMIGVGLAAIVTPALADFYIIQEPTTKRCRIVEERPAPNVGVIIGGAGFGVRVEAENRMRTIEVCKETTGRGGPAVIEERGGPAVIEERRERVIVPER*
Ga0187786_104130661	3300017944	Tropical Peatland	MKALMIGVGLAAIVTPALADYYIIQEPTTKRCRIVEERPAPNAGIIIGGAGFGVRLEAENRMRTIEVCKETTGSG
Ga0184608_101303741	3300018028	Groundwater Sediment	MKALMIGVGLAAIVTPALADFYIIQEPTTKRCRIVEERPAPSVGVIIGGAGFGVRVEAENRMRTIEVCKETTGRGGPAVIEERGGPAVIEERRERVIVPER
Ga0187788_103063662	3300018032	Tropical Peatland	MKALMIGVGLAAIVTPALADYYIIQEPTTKRCRIVEERPAPNAGIIIGGAGFGVRLEAENRMRTIEVCKETTGSGGPVVIEERRERVIRER
Ga0184617_11898411	3300018066	Groundwater Sediment	MKALMIGVGLAAIVTPALADFYIIQEPTTKRCRIVEERPAPSAGIIIGGAGFGVRVEAENRMRTIEVCKETTGRGGPAVIEERGGPAVIEERRERVIVPER
Ga0066662_106664582	3300018468	Grasslands Soil	MKALMIGVGLVAIATPALADFYIIQEPTTKRCRIVEERPAPNAGVIVGGAGFGVRVEAENRMRTIEVCREGTAGRRDRDDVIEERRERVIVPER
Ga0066662_119339392	3300018468	Grasslands Soil	MKKLLAIAALVTAATPALADFWIVQEPTTKHCRIVEERPAPGAGVVIGDRFGVRVEAESHMKTVEVCREGTVGGPARPDVRIEERERIPPR
Ga0184641_11471732	3300019254	Groundwater Sediment	GLAAIVTPALADFYIIQEPTTKRCRIVEERPAPSAGIIIGGAGFGVRVEAENRMRTIEVCKETTGRGGPAVIEERRERVIVPER
Ga0137408_13289042	3300019789	Vadose Zone Soil	MKALMIGVGLAAIVTPALADFYIIQEPTTKRCRIVEERPAPNVGVIIGGAGFGVRVEAENRMRTIEVCKETTGRGGPAVIEERGGPAVIEERRERVIVPER
Ga0179594_101537612	3300020170	Vadose Zone Soil	MKALMIGVGLAAIVTPALADFYIIQEPTTKRCRIVEERPAPNAGIIIGGAGFGVRVEAENRMRTVEVCREGTTGRRDRDEVIEERRERVIIPER
Ga0210381_100095601	3300021078	Groundwater Sediment	GVGLAAIVTPALADFYIIQEPTTKRCRIVEERPVPSVGVIIGGAGFGVRVEAENRMRTIEVCKETTGRGGPAVIEERGGPAVIEERRERVIVPER
Ga0207710_100404023	3300025900	Switchgrass Rhizosphere	MKALMIGVGLAAIVTPALADYYIIQEPTTKRCRIVEERPAPNAGIIIGGAGFGVRLEAENRMRTIEVCKETTGSGGPVIIEERRDRVIRER
Ga0209488_112273471	3300027903	Vadose Zone Soil	MKTLLASAALLALLSPALADFYIIQEPTTKRCRIVEERPAPGVGIVIGDVFGARVEAESRMRTVEVCREGTTGSGPPAVIEERERIRER
Ga0207428_101111112	3300027907	Populus Rhizosphere	MKALMIGVGLAAIVTPALADFYIIQEPTTKRCRIVEERPAPNAGIIIGGAGFGVRLEAENRMRTIEVCKETTGSGGPAVIEERRERVIRER
Ga0209382_110982932	3300027909	Populus Rhizosphere	LLMGAAAATMFATNAVADFYIVQEPTTKRCRIVEERPAPNIGIIIGDRGFGVRADAETHLRTVEVCRETTTGGGVTIEERGRVRER
Ga0137415_101388572	3300028536	Vadose Zone Soil	MKALMIGVGLVAIATPALADFYIIQEPTTKRCRIVEERPAPSVGVIIGGAGFGVRVEAENRMRTIEVCREGTTGRRDRDDVIEERRERVIIPER
Ga0307301_100747022	3300028719	Soil	MKALMIGVGLAAIVTPALADFYIIQEPTTKRCRIVEERPAPSAGIIIGGAGFGVRVEAENRMRTIEVCKETTGRGGPDVIEERRERVIVPER
Ga0307503_103965533	3300028802	Soil	MKALMIGVGLAAIVTPALADYYIIQEPTTKRCRIVEERPAPNAGIIIGGAGFGVRLEAENRMRTVEVCKETTGSGGPVI
Ga0308205_10073572	3300030830	Soil	NMKALMIGVGLAAIVTPALADFYIIQEPTTKRCRIVEERPAPSAGIIIGGAGFGVRVEAENRMRTIEVCKETTGRGGPDVIEERRERVIVPER
Ga0308202_10879912	3300030902	Soil	KALMIGVGLAAIVTPALADYYIIQEPTTKRCRIVEERPAPNAGIIIGGAGFGVRLEAENRMRTVEVCKETTGSGGPVIIEERRERVIRER
Ga0308206_10378802	3300030903	Soil	LMIGVGLAAIVTPALADFYIIQEPTTKRCRIVEERPAPNAGIIIGGAGFGVRVEAENRMRTIEVCKETTGRGGPAVIEERGGPAVIEERRERVIVPER
Ga0308206_10414382	3300030903	Soil	ENMKALMIGVGLAAIVTPALADFYIIQEPTTKRCRIVEERPAPSAGIIIGGAGFGVRVEAENRMRTIEVCKETTGRGGPDVIEERRERVIVPER
Ga0308200_11686311	3300030905	Soil	MKALMIGVGLAAIVTPALADFYIIQEPTTKRCRIVEERPAPNVGVVIGGSGFPVRIEAENRMRTVEVCKETTGRGGPAVIEERRGPAVIEERRERVIVPER
Ga0308201_104016122	3300031091	Soil	MKALMIGVGLAAIVTPALADFYIIQEPTTKRCRIVEERPAPSVGVVIGGSGFPVRIEAENRMRTVEVCKETTGRGGPAVIEERRGPAVIEERRERVIVPER
Ga0308199_11557421	3300031094	Soil	MKALMIGVGLVAIATPALADFYIIQEPTTKRCRIVEERPAPSAGVIIGGNGFGVRVEAESRMRTIEVCKETTGSGGPVIIEEQRERVIRER
Ga0307500_100277773	3300031198	Soil	MKALMIGVGLAAIVTPALADYYIIQEPTTKRCRIVEERPAPNAGIIIGGAGFGVRLEAENRMRTVEVCKETTGSGGPVIIEERRERVIRER
Ga0307500_100440341	3300031198	Soil	ALMIGVGLAAIVTPALADFYIIQEPTTKRCRIVEERPAPNAGIIIGGAGFGVRLEAENRMRTVEVCKETTGRGGPAVIEERRGPAVIEERRERVIVPER
Ga0310813_108526041	3300031716	Soil	MKALMIGVGLAAIVTTALADYYIIQEPTTKRCRIVEERPAPNAGIIIGGAGFGVRLEAENRMRTIEVCKETTGSGGPVIIEERRDRVIRER
Ga0307468_1001415892	3300031740	Hardwood Forest Soil	MKALMIGVGLVAIATPALADFYIIQEPTTKRCRIVEQRPAPSVGIIIGGGGFPVRIEAENRMRTIEVCRETSGSGGPAVIEERRERIIVPER
Ga0307468_1006799562	3300031740	Hardwood Forest Soil	MKALIIGVGLAAIVTPALADFYIIQEPTTKRCRIVEERPAPNAGIIIGGAGFGVRLEAENRMRTIEVCKETTGSGGPVIIEERRERVIRER
Ga0307470_104500682	3300032174	Hardwood Forest Soil	GVGLAAIVTPALADFYIIQEPTTKRCRIVEERPAPNAGIIIGGAGFGVRLEAENRMRTIEVCKETTGSGGPVIIEERRERVIRER
Ga0307470_108909241	3300032174	Hardwood Forest Soil	MKALMIGVGLAAIVTPALADFYIIQEPTTKRCRIVEERPAPSVGVVIGGSGFPVRIEAENRMRTVEVCRETTGSGGPAVIEERRGPAVIEERRERVIVPER
Ga0307471_1001949092	3300032180	Hardwood Forest Soil	MKALMIGVGLAAIVTPALADFYIIQEPTTKRCRIVEERPAPNAGIIIGGAGFGVRLEAENRMRTIEVCKETTGSGGPVIIEERRERVIRER
Ga0307471_1015956581	3300032180	Hardwood Forest Soil	IGVGLAAIATPALADFYIIQEPTTKRCRIVEQRPAPSVGIVIGGSGFPVRVEAENRMRTIEVCRETSGSGGPAVIEERRERIIVPER
Ga0307472_1008092522	3300032205	Hardwood Forest Soil	ADFYIIQEPTTKRCRIVEERPAPNAGIIIGGAGFGVQLEAENRMRTIEVCKETTGSGGPVIIEERRERVIRER
Ga0247830_115949571	3300033551	Soil	MKSLLMGAAVATMFATNAVADFYIVQEPTTKRCRIVEERPAPNIGIIIGDRGFGVRADAETHLRTVEVCRETTTGGGVTIEERGRVRER

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F060130

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences