Metagenome Family F060100

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F060100
Family Type	Metagenome
Number of Sequences	133
Average Sequence Length	87 residues
Representative Sequence	VQPEPARPASIGLFNGEALTLWRLRRGTTRISCFVAEWPGAFWLAVECAGGELLASETLPSVEAVLARADEARSAWLRQGWSEE
Number of Associated Samples	51
Number of Associated Scaffolds	133

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	12.78 %
% of genes near scaffold ends (potentially truncated)	36.09 %
% of genes from short scaffolds (< 2000 bps)	88.72 %
Associated GOLD sequencing projects	43
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.73

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (83.459 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil (40.602 % of family members)
Environment Ontology (ENVO)	Unclassified (40.602 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (45.113 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 15.18% β-sheet: 31.25% Coil/Unstructured: 53.57%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.73
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.73
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SCOP family	SCOP domain	Representative PDB	TM-score
d.297.1.1: WGR domain-like	d2cr9a1	2cr9	0.67
d.297.1.1: WGR domain-like	d2cr9a1	2cr9	0.67
b.68.1.1: Sialidases	d6pzda1	6pzd	0.62
b.68.1.1: Sialidases	d6pzda1	6pzd	0.62
b.29.1.18: Concanavalin A-like lectins/glucanases	d1vava_	1vav	0.61
c.119.1.0: DAK1/DegV-like	d6alwa_	6alw	0.61
c.119.1.0: DAK1/DegV-like	d6noka1	6nok	0.61
b.29.1.18: Concanavalin A-like lectins/glucanases	d1vava_	1vav	0.61
c.119.1.0: DAK1/DegV-like	d6alwa_	6alw	0.61
c.119.1.0: DAK1/DegV-like	d6noka1	6nok	0.61

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 133 Family Scaffolds
PF02417	Chromate_transp	19.55
PF00144	Beta-lactamase	16.54
PF14833	NAD_binding_11	3.01
PF12838	Fer4_7	1.50
PF13280	WYL	0.75
PF01855	POR_N	0.75
PF00593	TonB_dep_Rec	0.75
PF00070	Pyr_redox	0.75

COG ID	Name	Functional Category	% Frequency in 133 Family Scaffolds
COG2059	Chromate transport protein ChrA	Inorganic ion transport and metabolism [P]	19.55
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	16.54
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	16.54
COG2367	Beta-lactamase class A	Defense mechanisms [V]	16.54
COG0674	Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, alpha subunit	Energy production and conversion [C]	0.75
COG4231	TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit	Energy production and conversion [C]	0.75

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	83.46 %
Unclassified	root	N/A	16.54 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	83.46 %
Unclassified	root	N/A	16.54 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	83.46 %
Unclassified	root	N/A	16.54 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	24.06 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	17.29 %
Unclassified	root	N/A	16.54 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.75 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	24.06 %
Unclassified	root	N/A	16.54 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	10.53 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.75 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	24.06 %
Unclassified	root	N/A	16.54 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	10.53 %
Candidatus Eisenbacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria	0.75 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	24.06 %
Unclassified	root	N/A	16.54 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	1.50 %
Candidatus Eisenbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	0.75 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	24.06 %
Unclassified	root	N/A	16.54 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1.50 %
Candidatus Eisenbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	0.75 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001213\|JGIcombinedJ13530_101059696	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	626	Open in IMG/M
3300001213\|JGIcombinedJ13530_102411124	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	642	Open in IMG/M
3300001213\|JGIcombinedJ13530_106510202	Not Available	622	Open in IMG/M
3300003858\|Ga0031656_10012804	All Organisms → cellular organisms → Bacteria	3512	Open in IMG/M
3300003858\|Ga0031656_10067163	All Organisms → cellular organisms → Bacteria	1374	Open in IMG/M
3300003858\|Ga0031656_10258830	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	590	Open in IMG/M
3300004151\|Ga0066602_10144398	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1015	Open in IMG/M
3300004282\|Ga0066599_100372073	All Organisms → cellular organisms → Bacteria	877	Open in IMG/M
3300004282\|Ga0066599_101310934	Not Available	547	Open in IMG/M
3300004778\|Ga0062383_10466118	Not Available	629	Open in IMG/M
3300004779\|Ga0062380_10052102	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1387	Open in IMG/M
3300004808\|Ga0062381_10302983	Not Available	588	Open in IMG/M
3300005488\|Ga0074213_139450	All Organisms → cellular organisms → Bacteria	876	Open in IMG/M
3300005833\|Ga0074472_10334237	All Organisms → cellular organisms → Bacteria	555	Open in IMG/M
3300006224\|Ga0079037_100081270	All Organisms → cellular organisms → Bacteria	2658	Open in IMG/M
3300006224\|Ga0079037_100082238	All Organisms → cellular organisms → Bacteria	2644	Open in IMG/M
3300006224\|Ga0079037_100333579	All Organisms → cellular organisms → Bacteria	1417	Open in IMG/M
3300006224\|Ga0079037_100349548	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1386	Open in IMG/M
3300006224\|Ga0079037_100411259	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1283	Open in IMG/M
3300006224\|Ga0079037_100503805	All Organisms → cellular organisms → Bacteria	1163	Open in IMG/M
3300006224\|Ga0079037_101120970	All Organisms → cellular organisms → Bacteria	781	Open in IMG/M
3300006224\|Ga0079037_101249959	All Organisms → cellular organisms → Bacteria	739	Open in IMG/M
3300006930\|Ga0079303_10041860	All Organisms → cellular organisms → Bacteria	1588	Open in IMG/M
3300009081\|Ga0105098_10210166	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	902	Open in IMG/M
3300009091\|Ga0102851_10012854	All Organisms → cellular organisms → Bacteria → Proteobacteria	5860	Open in IMG/M
3300009091\|Ga0102851_10200989	All Organisms → cellular organisms → Bacteria → Proteobacteria	1869	Open in IMG/M
3300009091\|Ga0102851_10632866	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1122	Open in IMG/M
3300009091\|Ga0102851_12839030	Not Available	556	Open in IMG/M
3300009091\|Ga0102851_13272860	Not Available	520	Open in IMG/M
3300009111\|Ga0115026_10075887	All Organisms → cellular organisms → Bacteria → Proteobacteria	1965	Open in IMG/M
3300009111\|Ga0115026_10957400	All Organisms → cellular organisms → Bacteria	681	Open in IMG/M
3300009131\|Ga0115027_10122202	All Organisms → cellular organisms → Bacteria → Proteobacteria	1543	Open in IMG/M
3300009131\|Ga0115027_10713660	All Organisms → cellular organisms → Bacteria	754	Open in IMG/M
3300009131\|Ga0115027_10868748	Not Available	694	Open in IMG/M
3300009131\|Ga0115027_10962956	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	665	Open in IMG/M
3300009167\|Ga0113563_10120154	All Organisms → cellular organisms → Bacteria	2461	Open in IMG/M
3300009167\|Ga0113563_10304765	All Organisms → cellular organisms → Bacteria	1654	Open in IMG/M
3300009167\|Ga0113563_11610844	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	768	Open in IMG/M
3300009167\|Ga0113563_12298925	Not Available	648	Open in IMG/M
3300009167\|Ga0113563_12398401	All Organisms → cellular organisms → Bacteria	635	Open in IMG/M
3300009167\|Ga0113563_13537073	Not Available	529	Open in IMG/M
3300009167\|Ga0113563_13593047	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300009179\|Ga0115028_10777939	All Organisms → cellular organisms → Bacteria	742	Open in IMG/M
3300009179\|Ga0115028_10955519	All Organisms → cellular organisms → Bacteria	683	Open in IMG/M
3300009179\|Ga0115028_10997387	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	672	Open in IMG/M
3300009179\|Ga0115028_11151514	Not Available	635	Open in IMG/M
3300009455\|Ga0114939_10215815	Not Available	813	Open in IMG/M
3300027715\|Ga0208665_10143024	All Organisms → cellular organisms → Bacteria → Proteobacteria	747	Open in IMG/M
3300027721\|Ga0209492_1319685	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300027796\|Ga0209373_10055042	All Organisms → cellular organisms → Bacteria	1968	Open in IMG/M
3300027841\|Ga0209262_10136869	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1169	Open in IMG/M
3300027841\|Ga0209262_10152006	All Organisms → cellular organisms → Bacteria	1109	Open in IMG/M
3300027843\|Ga0209798_10181208	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	1045	Open in IMG/M
3300027871\|Ga0209397_10004162	All Organisms → cellular organisms → Bacteria → Proteobacteria	3214	Open in IMG/M
3300027871\|Ga0209397_10046053	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1596	Open in IMG/M
3300027871\|Ga0209397_10059166	All Organisms → cellular organisms → Bacteria	1465	Open in IMG/M
3300027871\|Ga0209397_10321578	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	744	Open in IMG/M
3300027871\|Ga0209397_10374697	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	693	Open in IMG/M
3300027877\|Ga0209293_10069858	All Organisms → cellular organisms → Bacteria	1509	Open in IMG/M
3300027877\|Ga0209293_10227608	All Organisms → cellular organisms → Bacteria	925	Open in IMG/M
3300027877\|Ga0209293_10544248	Not Available	611	Open in IMG/M
3300027885\|Ga0209450_10040474	All Organisms → cellular organisms → Bacteria	2815	Open in IMG/M
3300027885\|Ga0209450_11264679	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300027890\|Ga0209496_10112628	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1186	Open in IMG/M
3300027890\|Ga0209496_10364829	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	741	Open in IMG/M
3300027890\|Ga0209496_10410042	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	704	Open in IMG/M
3300027897\|Ga0209254_10000563	All Organisms → cellular organisms → Bacteria	30677	Open in IMG/M
3300027897\|Ga0209254_10232599	All Organisms → cellular organisms → Bacteria	1451	Open in IMG/M
3300027897\|Ga0209254_10232600	All Organisms → cellular organisms → Bacteria	1451	Open in IMG/M
3300027897\|Ga0209254_10544887	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	829	Open in IMG/M
3300027899\|Ga0209668_10043971	All Organisms → cellular organisms → Bacteria	2370	Open in IMG/M
3300027899\|Ga0209668_10891833	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	599	Open in IMG/M
3300027900\|Ga0209253_10020091	All Organisms → cellular organisms → Bacteria	5641	Open in IMG/M
3300031834\|Ga0315290_10020219	All Organisms → cellular organisms → Bacteria → Proteobacteria	5154	Open in IMG/M
3300032164\|Ga0315283_10526700	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1283	Open in IMG/M
3300032177\|Ga0315276_10403492	All Organisms → cellular organisms → Bacteria	1464	Open in IMG/M
3300032397\|Ga0315287_10455964	All Organisms → cellular organisms → Bacteria	1517	Open in IMG/M
3300033408\|Ga0316605_10017893	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	4430	Open in IMG/M
3300033408\|Ga0316605_10073487	All Organisms → cellular organisms → Bacteria → Proteobacteria	2532	Open in IMG/M
3300033408\|Ga0316605_10228173	All Organisms → cellular organisms → Bacteria	1587	Open in IMG/M
3300033408\|Ga0316605_10572443	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1051	Open in IMG/M
3300033408\|Ga0316605_11073812	All Organisms → cellular organisms → Bacteria	775	Open in IMG/M
3300033408\|Ga0316605_11109432	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	762	Open in IMG/M
3300033408\|Ga0316605_11274010	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	711	Open in IMG/M
3300033408\|Ga0316605_11434654	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	669	Open in IMG/M
3300033408\|Ga0316605_11462389	All Organisms → cellular organisms → Bacteria	663	Open in IMG/M
3300033408\|Ga0316605_11861315	Not Available	585	Open in IMG/M
3300033413\|Ga0316603_10194462	All Organisms → cellular organisms → Bacteria	1721	Open in IMG/M
3300033413\|Ga0316603_10351057	All Organisms → cellular organisms → Bacteria	1319	Open in IMG/M
3300033413\|Ga0316603_10791422	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	890	Open in IMG/M
3300033413\|Ga0316603_11156406	All Organisms → cellular organisms → Bacteria	732	Open in IMG/M
3300033413\|Ga0316603_11178704	All Organisms → cellular organisms → Bacteria	725	Open in IMG/M
3300033413\|Ga0316603_11365774	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	672	Open in IMG/M
3300033413\|Ga0316603_11517410	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	635	Open in IMG/M
3300033413\|Ga0316603_11557967	Not Available	626	Open in IMG/M
3300033414\|Ga0316619_10234368	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1351	Open in IMG/M
3300033414\|Ga0316619_11578537	Not Available	590	Open in IMG/M
3300033416\|Ga0316622_100074342	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3307	Open in IMG/M
3300033416\|Ga0316622_100075413	All Organisms → cellular organisms → Bacteria → Proteobacteria	3287	Open in IMG/M
3300033416\|Ga0316622_101049042	All Organisms → cellular organisms → Bacteria	952	Open in IMG/M
3300033416\|Ga0316622_102986336	Not Available	539	Open in IMG/M
3300033418\|Ga0316625_101365645	Not Available	661	Open in IMG/M
3300033418\|Ga0316625_101552263	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	629	Open in IMG/M
3300033419\|Ga0316601_100311663	All Organisms → cellular organisms → Bacteria	1445	Open in IMG/M
3300033419\|Ga0316601_100739106	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	968	Open in IMG/M
3300033434\|Ga0316613_10762388	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
3300033481\|Ga0316600_10945966	Not Available	610	Open in IMG/M
3300033482\|Ga0316627_100419342	All Organisms → cellular organisms → Bacteria	1157	Open in IMG/M
3300033482\|Ga0316627_101070879	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	788	Open in IMG/M
3300033482\|Ga0316627_101267749	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	733	Open in IMG/M
3300033482\|Ga0316627_102044278	All Organisms → cellular organisms → Bacteria	595	Open in IMG/M
3300033482\|Ga0316627_102264888	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300033482\|Ga0316627_102645264	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300033482\|Ga0316627_102724524	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300033483\|Ga0316629_10116339	All Organisms → cellular organisms → Bacteria	1549	Open in IMG/M
3300033483\|Ga0316629_10196737	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1275	Open in IMG/M
3300033485\|Ga0316626_11391281	Not Available	630	Open in IMG/M
3300033485\|Ga0316626_11760940	All Organisms → cellular organisms → Bacteria	560	Open in IMG/M
3300033485\|Ga0316626_12011145	Not Available	523	Open in IMG/M
3300033487\|Ga0316630_10333004	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1184	Open in IMG/M
3300033488\|Ga0316621_10606364	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	780	Open in IMG/M
3300033521\|Ga0316616_100525841	All Organisms → cellular organisms → Bacteria	1364	Open in IMG/M
3300033521\|Ga0316616_100933172	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1074	Open in IMG/M
3300033521\|Ga0316616_101195457	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	966	Open in IMG/M
3300033521\|Ga0316616_102232057	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	729	Open in IMG/M
3300033521\|Ga0316616_103124016	All Organisms → cellular organisms → Bacteria	624	Open in IMG/M
3300033521\|Ga0316616_103814433	Not Available	567	Open in IMG/M
3300033521\|Ga0316616_103816480	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	567	Open in IMG/M
3300033557\|Ga0316617_100441860	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1162	Open in IMG/M
3300033557\|Ga0316617_101352129	Not Available	713	Open in IMG/M
3300033557\|Ga0316617_101822703	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	621	Open in IMG/M
3300034053\|Ga0373890_036127	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	743	Open in IMG/M
3300034075\|Ga0373895_052079	All Organisms → cellular organisms → Bacteria	614	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.50%
Engineered	Engineered	1.50%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	56.39%
Terrestrial	Environmental → Terrestrial	42.11%
Bioremediation	Engineered → Bioremediation	1.50%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	53.38%
Soil	Environmental → Terrestrial → Soil	40.60%
Marine	Environmental → Aquatic → Marine	2.26%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	1.50%
Metal	Engineered → Bioremediation → Metal	1.50%
Sediment	Environmental → Aquatic → Sediment	0.75%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Terrestrial → Soil → Wetlands	40.60%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	18.05%
Sediment	Environmental → Aquatic → Freshwater → Sediment	17.29%
Lentic	Environmental → Aquatic → Freshwater → Lentic	9.77%
Pond	Environmental → Aquatic → Freshwater → Pond	4.51%
Lake	Environmental → Aquatic → Freshwater → Lake	3.01%
Wetlands	Environmental → Aquatic → Marine → Wetlands	2.26%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	1.50%
Unclassified	Engineered → Bioremediation → Metal → Unclassified	1.50%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.75%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	40.60%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	18.05%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	17.29%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	9.77%
Sediment	Environmental → Aquatic → Freshwater → Pond → Sediment	4.51%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	3.01%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	2.26%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	1.50%
Unclassified	Engineered → Bioremediation → Metal → Unclassified → Unclassified	1.50%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.75%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.75%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	40.60%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	15.79%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	15.04%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	9.02%
Freshwater	Environmental → Aquatic → Freshwater → Pond → Sediment → Freshwater	4.51%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	3.01%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	3.01%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	2.26%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	1.50%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	1.50%
Sediment Slurry	Engineered → Bioremediation → Metal → Unclassified → Unclassified → Sediment Slurry	1.50%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Sediment	0.75%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater	0.75%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.75%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300003858	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - DIP11 DI	Environmental	Open in IMG/M
3300004151	Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - High cellulose week 5	Environmental	Open in IMG/M
3300004282	Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Initial sediment	Environmental	Open in IMG/M
3300004778	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare3Fresh	Environmental	Open in IMG/M
3300004779	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare3Fresh	Environmental	Open in IMG/M
3300004808	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare1Fresh	Environmental	Open in IMG/M
3300005488	Sediment ecosystem from Lake Washington, Seattle, Washington, USA - Methane enrichment	Environmental	Open in IMG/M
3300005833	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.174_CBK	Environmental	Open in IMG/M
3300006224	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 4 metaG	Environmental	Open in IMG/M
3300006930	Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Methanogen_OWC	Environmental	Open in IMG/M
3300009081	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015	Environmental	Open in IMG/M
3300009091	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300009111	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1	Environmental	Open in IMG/M
3300009131	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Open_0915_D1	Environmental	Open in IMG/M
3300009167	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)	Environmental	Open in IMG/M
3300009179	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_0915_D1	Environmental	Open in IMG/M
3300009455	Groundwater microbial communities from Big Spring, Nevada to study Microbial Dark Matter (Phase II) - Ash Meadows Crystal Spring	Environmental	Open in IMG/M
3300027715	Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Methanogen_OWC (SPAdes)	Environmental	Open in IMG/M
3300027721	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015 (SPAdes)	Environmental	Open in IMG/M
3300027796	Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - High cellulose week 5 (SPAdes)	Environmental	Open in IMG/M
3300027841	Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Low cellulose week 11 (SPAdes)	Environmental	Open in IMG/M
3300027843	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare3Fresh (SPAdes)	Environmental	Open in IMG/M
3300027871	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Open_0915_D1 (SPAdes)	Environmental	Open in IMG/M
3300027877	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1 (SPAdes)	Environmental	Open in IMG/M
3300027885	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - LWP11 LW (SPAdes)	Environmental	Open in IMG/M
3300027890	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_0915_D1 (SPAdes)	Environmental	Open in IMG/M
3300027897	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - DIP11 DI (SPAdes)	Environmental	Open in IMG/M
3300027899	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL (SPAdes)	Environmental	Open in IMG/M
3300027900	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - BRP12 BR (SPAdes)	Environmental	Open in IMG/M
3300031834	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_0	Environmental	Open in IMG/M
3300032164	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_0	Environmental	Open in IMG/M
3300032177	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_0	Environmental	Open in IMG/M
3300032397	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_0	Environmental	Open in IMG/M
3300033408	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day20_noCT	Environmental	Open in IMG/M
3300033413	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_noCT	Environmental	Open in IMG/M
3300033414	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D4_B	Environmental	Open in IMG/M
3300033416	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D5_C	Environmental	Open in IMG/M
3300033418	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D1_A	Environmental	Open in IMG/M
3300033419	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day5_noCT	Environmental	Open in IMG/M
3300033434	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_CT_b	Environmental	Open in IMG/M
3300033481	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day5_CT	Environmental	Open in IMG/M
3300033482	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D1_C	Environmental	Open in IMG/M
3300033483	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D1_A	Environmental	Open in IMG/M
3300033485	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D5_A	Environmental	Open in IMG/M
3300033487	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D6_A	Environmental	Open in IMG/M
3300033488	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D1_C	Environmental	Open in IMG/M
3300033521	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D1_B	Environmental	Open in IMG/M
3300033557	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D2_B	Environmental	Open in IMG/M
3300034053	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A1A4.3	Engineered	Open in IMG/M
3300034075	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A4A4.2	Engineered	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ13530_1010596963	3300001213	Wetland	VHLEPTRPAPVGLFNGEAVTLWRLRRAAARMTCFVAEWPGAYWLAVECAGGELLASETLPSLEAVMT
JGIcombinedJ13530_1024111241	3300001213	Wetland	VQPEPVRPDAAGLFNGEALTLWRLRRETTRISCFVAEWPGAFWFAVECAGGELLSSDTLPTIEAVLARSDEHQ
JGIcombinedJ13530_1065102021	3300001213	Wetland	APGFEQAGSSKNAGFPELTPSYNSRVLPEPTRPVPAGLFNGEALTLWRLRRDTVRICCFVAEWPGAYWFAVESDGGELLSSETLPSVEAVLARSDETRSTWIHDGWTED*
Ga0031656_100128045	3300003858	Freshwater Lake Sediment	VQPEPTRPAAVSLFKGEALTLWRLRRDTTRVSCFVAEWPGAFWLAVECAGGELLSSETLPSLEAVLARSDQARSAWVRQGWSEE*
Ga0031656_100671633	3300003858	Freshwater Lake Sediment	VQPEPTRPVAVGLFKGEALTLWRLRRDTTRVSCFVAEWPGAFWLAVECAGGELLSSETLPSLEAVLARSDEARSAWVRQGWVEE*
Ga0031656_102588302	3300003858	Freshwater Lake Sediment	EALTLWRLRRGTARISCFVAEWPGAFWIAVECAGGALLSSETLPSVEAVLAAADQARSTWNRQGWIEE*
Ga0066602_101443982	3300004151	Freshwater	VQPESTRPAAVGLFKGEALTLWRLRRDTTRIACFVAEWPGAFWLAVECAGGELLSSETLPSLDAVLARSDEARSAWVRQGWIEE*
Ga0066599_1003720733	3300004282	Freshwater	MSYNGRVQPQPPRPVPAGLFGGEALTLWRLRRGPARISCFVAEWPGAFWIAVECAGGALLSSETLPSV
Ga0066599_1013109342	3300004282	Freshwater	RAGSRTTDQDRSCTSYNSRVQPEPPRQVPSGLFGGEALTLWRLRRGTATISCFVAEWPGAFWIAVECAGGALLSSETLPSVEAVLAAADQARSTWNRQGWIEE*
Ga0062383_104661181	3300004778	Wetland Sediment	VQPEPLRPAPAGLFNGEAVTLWRLRRDTTRISCFVAEWPGAYWLAVECAGGELLSSETLPSLEAVMTRSDETRSAWLRQGWTEE*
Ga0062380_100521021	3300004779	Wetland Sediment	MAVQPDPTRPTVITGLFNGEALTLWRLRLGTGRIHCFVAEWPGAFWLAVECPGGALLWSETLPTVEAVLARSDDARSAWARQGWTEV*
Ga0062381_103029832	3300004808	Wetland Sediment	EVVGHRRIVSRYAKAVQPEPTRPAAVGLFKGEALTLWRLRRDTTRVSCFVAEWPGAFWLAVECAGGELLSSETLSSLEEVMTRSNQTRSAWILEGWTEE*
Ga0074213_1394502	3300005488	Sediment	VQPEPTRPAAVGLFKGEALTLWRLRRDTTRIACFVAEWPGAFWLAVECAGGELLSSETLPSLDAVLARSDEARSAWIRQGWNEE*
Ga0074472_103342373	3300005833	Sediment (Intertidal)	VQPEQVRPAPVGLFNGEALTLWRLRRGTGRIHCFVAEWPGAFWIAVECPGGALLWSESLPTVEAVLARADEARSAWLRRGWSEE*
Ga0079037_1000812704	3300006224	Freshwater Wetlands	VQREPPLPAPVGLFDGEALTLWRLRRDRTRIACFVAEWPGSYWLAVECAGGELLSSETLPSIEAAMNRSAEARSAWLRQGWSEE*
Ga0079037_1000822384	3300006224	Freshwater Wetlands	VQPEPTRPAQAGLFNGEALTLWRLRRGPTRIVCFVVEWPGDYWLAVECAGGELLSSETLPSVEAVLAGSDEARAAWLRQGWTEE*
Ga0079037_1003335793	3300006224	Freshwater Wetlands	MLRSRPDPILQYNSHVQPEHARPAPIGLFNGEALTLWRLRRGTARISCFVAEWPGAFWLAVECAGGELLSSETLPSVEAVLARADEARSAWLRQGWSEE*
Ga0079037_1003495483	3300006224	Freshwater Wetlands	MLCSRPDPILQYNSDVQPEHARPAPTGLFNGEALTLWRLRRDNTRITCFVAEWPGAYWLAVECAGGELLASETLPSVEAVLARADEARSAWLRQGWSEE*
Ga0079037_1004112593	3300006224	Freshwater Wetlands	MLCSEPDPILQYNSGVQPERTHPASVGLFNGEALTLWRLRRDTTRISCFVAEWPGAFWLAVECAGGELLSSETLPSADAALARSEEARSAWLRQGWVEE*
Ga0079037_1005038053	3300006224	Freshwater Wetlands	VESEPIRQASVGLFNGEALTLWRLRRDTARVDCFVAEWPGAYWLAVECAGGELLSSETLPSLEAVMARSDEARSEWVRQGWTEE*
Ga0079037_1011209702	3300006224	Freshwater Wetlands	VKPEPSHPVAVGLFNGEALALWRLRRGATRISCFVAEWPGAFWLAVECAGGELLSSDTLATIDDVLARSDEDRLARLRDGWRED*
Ga0079037_1012499592	3300006224	Freshwater Wetlands	VQPEPVRPASAGLFNGEALTLWRLKHDTTRIACFVAEWPGAYWLAVECAGGELLLSETLSSLDAVLARSDEARSGWVRQGWTEE*
Ga0079303_100418603	3300006930	Deep Subsurface	VQPEPTRPFSAGPFKGEALTLWRLRRDTTRISCFVAEWPHAFWLAVECAGGELLSSETLSSVDAVLVRSEEARSAWLRQGWAEE*
Ga0105098_102101661	3300009081	Freshwater Sediment	EPHRPVPAGLFAGEALTLRRLRRGTARISCFVSEWPGAFWLAVECAGGALLSSETLPSVEAVLVAAEQARSTWNRQGWIEE*
Ga0102851_100128547	3300009091	Freshwater Wetlands	VQPEPIRPAPADLFNGEAVTLWRLRRGRTRVACFVAEWPGAFWLAVECAGGELLSSETLPSIEVVMARSDETRSAWLRQGWTEE*
Ga0102851_102009893	3300009091	Freshwater Wetlands	VQPEHARPAPTGLFNGEALTLWRLRRDNTRITCFVAEWPGAYWLAVECAGGELLASETLPSVEAVLARADEARSAWLRQGWSEE*
Ga0102851_106328663	3300009091	Freshwater Wetlands	LDLTPSYNSGVQPEPTRPAPVGLFNGEAVTLWRLRRATARISCFVAEWPGAYWLAVECAGGELLASETLPSVEAVMTRSDETRSAWLRQGWTEE*
Ga0102851_128390302	3300009091	Freshwater Wetlands	YASAVQPEPARPSSIGLFNGEALTLWRRRRGTTRISCFVAEWPGAFWLAVECAGGELLSSETLPSVEAVLARADEARSACLRQGWSEE*
Ga0102851_132728601	3300009091	Freshwater Wetlands	DSGSSERLPNAGLPGLTPVYNSPVQPEPIRPATVGLFNGEALTLWRLRRGPTRISCFVAEWPGAYWLAVECAGGELISSDTLATIDDVLVRSDQDRSARLRDGWTEE*
Ga0115026_100758872	3300009111	Wetland	VQPEHARPAPTGLFNGEALTLWRLSRDNTRITCFVAEWPGAYWLAVECAGGELLASETLPSVEAVLARADEARSAWLRQGWSEE*
Ga0115026_109574002	3300009111	Wetland	VGLFNGEALTLWRLRHAAARITCFVAEWPGAYWLAVECAGGELLSSETLPSLEAVMTRSDETRSAWLREGWIEE*
Ga0115027_101222023	3300009131	Wetland	LPGLRGQVRDTTLAFPDLSPYNTPVQPEPIRPAPADLFNGEAVTLWRLRRGRTRVACFVAEWPGAFWLAVECAGGELLSSETLPSIEVVMARSDETRSAWLRQGWTEE*
Ga0115027_107136601	3300009131	Wetland	VGLFNGEAVTLWRLRRATARISCFVAEWPGAYWLAVECAGGELLASETLPSLEAVMARSDEARSE
Ga0115027_108687482	3300009131	Wetland	VQPEPTHPVPLGLFNGEALTLWRLRRGATRISCFVAEWPGAYWLAVECAGGELLASETVPSLEAVLAGSEAARATWLRQGWTEE*
Ga0115027_109629561	3300009131	Wetland	PVYNSPVQPEPIRPPTIGLFNGEALTLWRLRRGPTRISCFVAEWPGAYWLAVECAGGELISSDTLATIDDVLVRSDQDRSARLRDGWTEE*
Ga0113563_101201541	3300009167	Freshwater Wetlands	VQPEPIRPATVGLFNGEALTLWRLRRGATRISCFVAEWPGAYWLAVECAGGELLSSDTLATIDDVLVRSDEDRSARLRDGWTEE*
Ga0113563_103047652	3300009167	Freshwater Wetlands	VKPEPSHPVAVGLFNGEALALWRLRRGATRISCFVAEWPGAFWLAVECAGGELLSSDTLATIDDVLARSDEDRSGRLRDGWTED*
Ga0113563_116108441	3300009167	Freshwater Wetlands	VGLFNGEALTLWRLRRGATRISCFVAEWPGAYWLAVECAGGELISSDTLATIDDVLVRSDQDRSARLRDGWTEE*
Ga0113563_122989252	3300009167	Freshwater Wetlands	VQPEPTRPFSAGLFNGEALTLWRLRRDTTRISCFVAEWPHAFWLAVECAGGELLSSETLSSVDAVLVRSEEARSAWLRQGWAEE*
Ga0113563_123984012	3300009167	Freshwater Wetlands	VQPEQSRPASAFLFNGEALTLWRLRRGTTRISCFVAEWPGAFWLAMECAGGELLSSETLPNVEAVLARSDEARSACLRQGWIEE*
Ga0113563_135370731	3300009167	Freshwater Wetlands	KNGGLLDLTASYNSRVQPEPTRPAPVGLFNGEALTLWRLRRATARVSCFVAEWPGAYWLAVECAGGELLASETLPSVEAVMTRSDETRSAWLRQGWTEE*
Ga0113563_135930471	3300009167	Freshwater Wetlands	LDLTPSYNSGVQPEPTRPASVGLFNGEALTLWRLRRGATRVSCFVAEWPGAFWIAVECVGGELLSSETLPSIEAVLARSDQNRSALVREGWIE
Ga0115028_107779392	3300009179	Wetland	MLCSEPDPILQYNSGVQPERTHPASVGLFNGEALTLWRLRRDTTRISCFVAEWPHAFWLAVECAGGELLSSETLSSVDAVLVRSEEARSAWLRQGWVEE*
Ga0115028_109555192	3300009179	Wetland	VQPEPIRPATVGLFNGEALTLWRLRRGATRISCFVAEWPGAYWLAVECAGGELISSDTLATIDDVLVRSDQDRSARLRDGWTEE*
Ga0115028_109973872	3300009179	Wetland	VQPQPPRPAPAGLFGGEALTLWRLRRGTARISCFVAEWPGAFWLAVECGGGALLFSETLPTLEAVLARSEENRSAWVREGWSEE*
Ga0115028_111515142	3300009179	Wetland	LDLTASYNSRVQPEPTRPAPVGLFNGEALTLWRLRRATARMTCFVAEWPGAYWLAVECAGGELLASETLPSLEAVMTRSDETRSAWLREGWIEE*
Ga0114939_102158151	3300009455	Groundwater	VKKAGLLDLTPSYNSPVHPEPAFPAPVGLFNGEALTLWRLRRDRTRISCFVAEWPGSYWLAVECAGGELLSSETLPSIEAVMNRSAEARSAWLRQGWSEE*
Ga0208665_101430241	3300027715	Deep Subsurface	VQPEPTRPFSAGPFKGEALTLWRLRRDTTRISCFVAEWPHAFWLAVECAGGELLSSETLSSVDAVLVRSEEARSAWLRQGWAEE
Ga0209492_13196851	3300027721	Freshwater Sediment	VQPEPPRPVPAGLFGGEALTLWRLRRGTARISCFVAEWPGAFWIAVECAGGALLSSETLPSVEAVLAAADRARSAWAGQGWIEE
Ga0209373_100550423	3300027796	Freshwater	VQPESTRPAAVGLFKGEALTLWRLRRDTTRIACFVAEWPGAFWLAVECAGGELLSSETLPSLDAVLARSDEARSAWVRQGWIEE
Ga0209262_101368693	3300027841	Freshwater	PPVRVEVVGHRRIVSRYAKRVQPESTRPAAVGLFKGEALTLWRLRRDTTRIACFVAEWPGAFWLAVECAGGELLSSETLPSLDAVLARSDEARSAWVRQGWIEE
Ga0209262_101520061	3300027841	Freshwater	VQPEPTRPAAVGLFKGEALTLWRLRHDTTRISCFVAEWPGAFWLAVECAGGELLSSETLPSLEAVLARSDEARSAWVRQGWNEE
Ga0209798_101812083	3300027843	Wetland Sediment	VQPEPLRPAPAGLFNGEAVTLWRLRRDTTRISCFVAEWPGAYWLAVECAGGELLSSETLPSLEAVMTRSDETRSAWLRQGWTEE
Ga0209397_100041623	3300027871	Wetland	VQPEPTRPFSAGLFNGEALTLWRLRRDTTRISCFVAEWPHAFWLAVECAGGELLSSETLSSVDAVLVRSEEARSAWLRQGWVEE
Ga0209397_100460531	3300027871	Wetland	SAVQHEPIRPAAVGLFNGEALTLWRLRRGATRISCFVAEWPGAYWLAVECAGGELISSDTLATIDDVLVRSDQDRSARLRDGWTEE
Ga0209397_100591662	3300027871	Wetland	VQPEHARPAPTGLFNGEALTLWRLRRDNTRITCFVAEWPGAYWLAVECAGGELLASETLPSVEAVLARAKVL
Ga0209397_103215781	3300027871	Wetland	LDLAPSYNSRVHLEPTRPAPVGLFNGEAVTLWRLRRATARISCFVAEWPGAYWLAVECAGGELLASETLPSLEAVMTRSDET
Ga0209397_103746973	3300027871	Wetland	VQPEPTHPVPLGLFNGEALTLWRLRRGATRISCFVAEWPGAYWLAVECAGGELLASETVPSLEAVLAGSEAARATWLRQGWTEE
Ga0209293_100698581	3300027877	Wetland	VQPEPTRPFSAGLFNGEALTLWRLRRDTTRISCFVAEWPHAFWLAVECAGGELLSSETLSSVDAVLVRSEEARSAWLRQGWAEE
Ga0209293_102276083	3300027877	Wetland	MLCSRPDPILQYNSVVQPEHARPAPTGLFNGEALTLWRLRRDNTRITCFVAEWPGAYWLAVECAGGELLASETLPSVEAVLARADEARSAWLRQGWSEE
Ga0209293_105442481	3300027877	Wetland	VQPEPTRPAQAGLFNGEALTLWRLRRGPTRIVCFVVEWPGDYWLAVECAGGELLSSETLPSVEAVLAGSDEARAAWLRQGWTEE
Ga0209450_100404744	3300027885	Freshwater Lake Sediment	VSPSYNSPVKPEPSRPVAVGLFNGEALTLWRLRRGATRISCFVAEWPGAYWLAVECAGGELISSDTLATIDDVLVRSDQDRSARLRDGWTED
Ga0209450_112646792	3300027885	Freshwater Lake Sediment	VQPEPPRPVPAGLFAGEALTLWRLRRGTARISCFVAEWPGAFWIAVECAGGALLSSETLPSVEAALAAADQARSAWAGQGWIEE
Ga0209496_101126283	3300027890	Wetland	DPDRSCTSSSRLSKNGGLLDLTASYNSRVQPEPTRPAPVGLFNGEALTLWRLRRATARMTCFVAEWPGAYWLAVECAGGELLASETLPSLEAVMTRSDETRSAWLREGWIEE
Ga0209496_103648291	3300027890	Wetland	VQPEPTRPFSAGPFKGEALTLWRLRRDTTRISCFVAEWPHAFWLAVECAGGELLSSETLSSVDAVLVRSEEARSAWLRQGWVEE
Ga0209496_104100422	3300027890	Wetland	VQPQPPRPAPAGLFGGEALTLWRLRRGTARISCFVAEWPGAFWLAVECGGGALLFSETLPTLEAVLARSEENRSAWVREGWSEE
Ga0209254_1000056327	3300027897	Freshwater Lake Sediment	VQLEPPRPVPVGLFGGEALTLWRLRRGTARISCFVAEWPGAFWIAVECAGGALLSSETLPSVEAVLAAADQARSTWNRQGWIEE
Ga0209254_102325993	3300027897	Freshwater Lake Sediment	VQPEPTRPAAVSLFKGEALTLWRLRRDTTRVSCFVAEWPGAFWLAVECAGGELLSSETLPSLEAVLARSDQARSAWVRQGWSEE
Ga0209254_102326003	3300027897	Freshwater Lake Sediment	VQPEPTRPVAVGLFKGEALTLWRLRRDTTRVSCFVAEWPGAFWLAVECAGGELLSSETLPSLEAVLARSDEARSAWVRQGWVEE
Ga0209254_105448872	3300027897	Freshwater Lake Sediment	GLFKGEALTLWRLRRDTTRIACFVAEWPGAFWLAVECAGGELLSSETLPSLDAVLARSDEARSAWVRQGWIEE
Ga0209668_100439714	3300027899	Freshwater Lake Sediment	VQPEPTRPAAVGLFKGEALTLWRLRRDTTRIACFVAEWPGAFWLAVECAGGELLSSETLPSLDAVLARSDQARSAWIRQGWNEE
Ga0209668_108918332	3300027899	Freshwater Lake Sediment	PAPIRPLTVGLFNGEAVTLWRLCHGTGRVSCFVAEWPGAFWLAVECAGGELVSSETLPTIEAVLARSDEARSAWIRKGWIEE
Ga0209253_100200917	3300027900	Freshwater Lake Sediment	VGHRRIVSRYAIAVQPETARPAPVGLFNGEALTLWRLRRGTTRITCFVAEWPGAFWLAVECAGGELLASETLPSVEAVLARADEARSAWIRQGWSEE
Ga0315290_100202195	3300031834	Sediment	VQPEPTHPAAVGLFKGEALTLWRLRRDTTRIACFVAEWPGAFWLAVECAGGELLSSETLPSLDAVLARSDEARSAWVRQGWNEE
Ga0315283_105267001	3300032164	Sediment	RPASVGLFKGEALTLWRLRHDTTRISCFVAEWPGAFWLAVECAGGELLSSETLPSLEAVLAKSDEARSAWVRQGWIEE
Ga0315276_104034923	3300032177	Sediment	VQPEPTRPASVGLFKGEALTLWRLRHDTTRISCFVAEWPGAFWLAVECAGGELLSSETLPSLDAVLARSDEARSAWVRQGWNEE
Ga0315287_104559643	3300032397	Sediment	VQPERTRAASVGLFNGEALTLWHLRRDTTRIACFVAEWPGAFWLAVECAGGELLSSETLPSLEAVLAKSDEARSAWVRQGWIEE
Ga0316605_100178932	3300033408	Soil	VHLEPTRPAPVGLFNGEALTLWRLRHAAARITCFVAEWPGAYWLAVECAGGELLSSETLPSLEAVMTRSDETRSAWLREGWIEE
Ga0316605_100734873	3300033408	Soil	VQPEPIRPAPVGLFNGEALTLWRLRRGATRISCFVAEWPGAYWLAVECAGGELLSSETLATIDDVLARSDEDRSGRLRDGWTED
Ga0316605_102281733	3300033408	Soil	MLCSEPDPILQYNSGVQPERTHPASVGLFNGEALTLWRLRRDTTRISCFVAEWPGAFWLAVECAGGELLSSETLPSADAALARSEEARSAWLRQGWVEE
Ga0316605_105724431	3300033408	Soil	GRSCRSYRVRSENPASIASSKNAGLLDVTPSYNSRVQPEPARPAPVDLFNGEALTLWRLRRGTARVSCFVAAWPGAYWFAVECAGGELVSSETLPSVEAVLARSDEARSALVRQGWIEE
Ga0316605_110738121	3300033408	Soil	VQPDPAHPVQAGLFNGEALVLWRLCRSTRRIHCFVAEWPGAYWLAVECAGGALLASDTLATIDAVLARSEAAR
Ga0316605_111094321	3300033408	Soil	VRVEVVGHGFAHCLRGQAPDTTPALPGLRGQVRDTTLAFPDLSPYNTPVQPEPIRPAPADLFNGEAVTLWRLRRGRTRVACFVAEWPGAFWLAVECAGGELLSSETLPSIEVVMARSDETRSAWLRQGWTEE
Ga0316605_112740101	3300033408	Soil	VLDLTPSYNSRVQPEPTRPAPVGLFNGEALTLWRLRRATARMTCFVAEWPGAYWLAVECAGGELLSSETLPSVEAVMTRSDETRSAWLRQGWTEE
Ga0316605_114346541	3300033408	Soil	VQPEPTRPSQAGLFNGEALTLWRLQRGPARIACFVVEWPGAYWLAVECAGGELLSSDTLPSVEAVLAGSDEARAAWLRQGWTEE
Ga0316605_114623892	3300033408	Soil	VSPSYNSPVKPEPSRPVAVGLFNGEALTLWRLRRGATRISCFVAEWPGAFWFAVECAGGELLSSDTLATIEDVLARSDEDRSARLRDGWTED
Ga0316605_118613152	3300033408	Soil	KNGGLSDLTASYNSRVQPEPTRPAPVGLFNGEALTLWRLRRATARVSCFVAEWPGAYWLAVECAGGELLASETLPSVEAVMTRSDETRSAWLRQGWTEE
Ga0316603_101944623	3300033413	Soil	VESEPIRQASVGLFNGEALTLWRLRRDTARVDCFVAEWPGSYWLAVECAGGELLSSETLPSLEAVMARSDEARSEWVRQGWTEE
Ga0316603_103510572	3300033413	Soil	VQPEPIRPATVGLFNGEALTLWRLRRGATRISCFVAEWPGAYWLAVECAGGELISSDTLATIDDVLVRSDQDRSARLRDGWTEE
Ga0316603_107914223	3300033413	Soil	VQPEPIRPPTIGLFNGEALTLWRLRRGPTRISCFVAEWPGAYWLAVECAGGELISSDTLATIDDVLVRSDQDRSARLRDG
Ga0316603_111564062	3300033413	Soil	VQPQPPRPAQASLFGGEALTLWRLRRDTARISCFVAEWPGAFWLAVECGGGALLFSETLPTLEAVLARSEENRSAWVREGWSEE
Ga0316603_111787042	3300033413	Soil	MLCSRPDPILQYNSDVQPEHARPAPTGLFNGEALTLWRLRRDNTRITCFVAEWPGAYWLAVECAGGELLASETLPSVEAVLARADEARSAWLRQGWSEE
Ga0316603_113657743	3300033413	Soil	VHLEPTRPAPVGLFNGEALTLWRLRRATARITCFVAEWPGAYWLAVECAGGELLSSETLPSLEAVMTRSDETRSAWLRQGWTEE
Ga0316603_115174103	3300033413	Soil	LDLTASYNSRVQPEPTRPAPVGLFNGEALTLWRLRRTTARISCFVAEWPGAYWLAVECAGGELLASETLPS
Ga0316603_115579672	3300033413	Soil	VQPEPIRPAPADLFNGEAVTLWRLRRGRTRVACFVAEWPGAFWLAVECAGGELLSSETLPSIEVVMARSDETRSAWLRQGWTEE
Ga0316619_102343683	3300033414	Soil	TGLFNGEALTLWRLRRDNTRITCFVAEWPGAYWLAVECAGGELLASETLPSVEAVLARADEARSAWLRQGWSEE
Ga0316619_115785371	3300033414	Soil	PSYNSRVHLEPTRPAPVGLFNGEALTLWRLRHAAARITCFVAEWPGAYWLAVECAGGELLSSETLPSLEAVMTRSDETRSAWLRQGWTEE
Ga0316622_1000743426	3300033416	Soil	LSSLTPSYNSPVQPEPIRPVPAGLFSGEALTLWRLRRGRTRIACFVAEWPGAFWLAVECAGGELLSSETLPSIEAVMARSDENRSAWLRQGWTEE
Ga0316622_1000754133	3300033416	Soil	VQPEPARPASIGLFNGEALTLWRLRRGTTRISCFVAEWPGAFWLAVECAGGELLASETLPSVEAVLARADESRSAWLRQGWSEE
Ga0316622_1010490423	3300033416	Soil	VESEPIRQASVGLFNGEALTLWRLRRDTARVDCFVAEWPGAYWLAVECAGGELLSSETLPSLEAVMARSDEARSEWVRQGWTEE
Ga0316622_1029863362	3300033416	Soil	VQREPPLPAPVGLFDGEALTLWRLRRDRTRIACFVAEWPGSYWLAVECAGGELLSSETLPSIEAAMNRSAEARSAWLRQGWSEE
Ga0316625_1013656452	3300033418	Soil	LDLTPSYNSRVQPEPTRLAPVGLFNGEALTLWRLRRATARIFCFVAEWPGAYWLAVECAGGELLASETLPSLEAVMTRSDETRSAWLRQGWTEE
Ga0316625_1015522631	3300033418	Soil	EALTLWRLRRDTARVDCFVAEWPGAYWLAVECAGGELLSSETLPSLEAVMARSDEARSEWVRQGWTEE
Ga0316601_1003116633	3300033419	Soil	VQPEPTRPSQAGLFNGEALTLWRLQRGPARIACFVVEWPGAYWLAVECAGGELLSSDTLYSVEAVLAGSDEARAAWLRQGWTEE
Ga0316601_1007391063	3300033419	Soil	LVPAIRVEVVCHPTPSYNSRVQPEPTRPFSAGPFKGEALTLWRLRRDTTRISCFVAEWPHAFWLAVECAGGELLSSETLSSVDAVLVRSEEARSAWLRQGWVEE
Ga0316613_107623882	3300033434	Soil	VQPEPTRPSQAGLFNGEALTLWRLQRGPARIACFVVEWPGAYWLAVECAGGELLSSETLSSVEAVLARSEEVRSGWLRQGWAEE
Ga0316600_109459661	3300033481	Soil	CTSSSRLSKNGGVSDLTASYNSRVQPEPTRPAPAGLFNGEALTLWRLRRATARVSCFVAEWPGAYWLAVECAGGELLASETLPSVEAVITRSDETRSAWLRQGWIEE
Ga0316627_1004193421	3300033482	Soil	VQPEPARPASIGLFNGEALTLWRLRRGTTRISCFVAEWPGAFWLAVECAGGELLASETLPSVEAVLARADEARSAWLRQGWSEE
Ga0316627_1010708791	3300033482	Soil	PDPAHPVQAGLFNGEALVLWRLCLSTRRIHCFVAEWPGAYWLAVECAGGALLASDTLATIDAVLARSEAARLEWIGKGWTEE
Ga0316627_1012677492	3300033482	Soil	MQPDLSRPGTAGVFNGEALTLWRLRRETGGIHCFVAEWPGAFWFAVACDGGELLASETLSTAEEVLARSAGVRATLLSEGWREE
Ga0316627_1020442782	3300033482	Soil	VESEPIRQASVGLFNGEALTLWRLRRDTARVDCFVAEWPGAYWLAVECAGGELLSSETLPSLEAVMARSDEARSEWIRQGWTEE
Ga0316627_1022648881	3300033482	Soil	VHLEPTRPAPVGLFNGEALTLWRLRHAAARITCFVAEWPGAYWLAVECAGGELLSSETLPSLEAVMTRSDETRSAWLRQGWIEE
Ga0316627_1026452641	3300033482	Soil	VKPEPSHPVAVGLFNGEALALWRLRRGATRISCFVAEWPGAFWLAVECAGGELLSSDTLATIDDVLARSDEDRLARLRDGWREG
Ga0316627_1027245241	3300033482	Soil	VSDLTASYNSRVQPEPTRPAPVGLFNGEALTLWRLRRATARVSCFVAEWPGAYWLAVECAGGELLASETLPSVEAVMTRSDETRSAWLRQG
Ga0316629_101163393	3300033483	Soil	VQPEPIRPLTVGLFNGEALTLWRLRRGATRISCFVAEWPGAYWLAVECAGGELISSDTLATIDDVLVRSDQDRSARLRDGWTEE
Ga0316629_101967371	3300033483	Soil	AGFLALAPFYNSRVQPEPIRPAPVGLFNGEALTLWRLRRGATRISCFVAEWPGAYWLAVECAGGELLSSETLATIDDVLARSDEDRSARLRDGWTEE
Ga0316626_113912811	3300033485	Soil	TTPALPGLRGQVRDTTLAFPDLSPYNTPVQPEPIRPAPADLFNGEAVTLWRLRRGRTRVACFVAEWPGAFWLAVECAGGELLSSETLPSIEVVMTRSDETRSAWLRQGWMEE
Ga0316626_117609401	3300033485	Soil	VESEPIRQASVGLFNGEALTLWRLRRDTARVDCFVAEWPGAYWLAVECAGGELLSSETLPSVEAVLARSDEARSAWLRQGWTEE
Ga0316626_120111451	3300033485	Soil	TPSYNSRVQPEPTRPFSAGPFKGEALTLWRLRRDTTRISCFVAEWPHAFWLAVECAGGELLSSETLSSVDAVLVRSEEARSAWLRQGWVEE
Ga0316630_103330041	3300033487	Soil	SAGLFNGEALTLWRLRRDTTRISCFVAEWPHAFWLAVECAGGELLSSETLSSVDAVLVRSEEARSAWLRQGWVEE
Ga0316621_106063641	3300033488	Soil	PGRSCKSSGVRSRTQHYPRIWRMLCSEPDPILQYNSGVQPERTHPASVGLFNGEALTLWRLRRDTTRISCFVAEWPGAFWLAVECAGGELLSSETLPSADAALARSEEARSAWLRQGWVE
Ga0316616_1005258413	3300033521	Soil	MLCSRPDPILQYNSDVQPEHARPAPTGLFNGEALTLWRLSRDNTRITCFVAEWPGAYWLAVECAGGELLASETLPSVEAVLARADEARSAWLRQGWSEE
Ga0316616_1009331723	3300033521	Soil	FSAGLFKGEALTLWRLRRDTTRISCFVAEWPHAFWLAVECAGGELLSSETLSSVDAVLVRSEEARSAWLRQGWAEE
Ga0316616_1011954571	3300033521	Soil	VQPEPTRPASVGLFNGEALTLWRLRRGTTRISCFVAEWPGAFWIAVECAGGELLSSETLSSVEAVLARSEEVRSGWLRQGWAEE
Ga0316616_1022320571	3300033521	Soil	RTTGQDRSCTSYNSRVQPQPPRPAPAGLFGGEALTLWRLRRGTARISCFVAEWPGAFWLAVECGGGALLFSETLPTLEAVLARSEENRSAWVREGWSEE
Ga0316616_1031240162	3300033521	Soil	VAVGLFNGEALTLWRLRRDTARISCFVAEWPGAFWFGVECDGGELLSSETLPTLEAVLARSEETRSEWLHGGWIEE
Ga0316616_1038144332	3300033521	Soil	PSYNSRVHLEPTRPAPVGLFNGEALTLWRLRHAAARITCFVAEWPGAYWLAVECAGGELLASETLPSLEAVMTRSDETRSAWLRQGWIEE
Ga0316616_1038164802	3300033521	Soil	EAVTLWRLRRATARMTCFVAEWPGAYWLAVECAGGELLSSETLPSLEAVMTRSDETRSAWLRQGWTEE
Ga0316617_1004418603	3300033557	Soil	LDLTPSYNSRVQPEPTRLAPVGLFNGEALTLWRLRRATARIFCFVAEWPGAYWLAVECAGGELLASETLPSLEAVMTRSDETRSAWLRQGWIEE
Ga0316617_1013521292	3300033557	Soil	VSDLPASYNSGVQPEPTRPAPVGLFNGEALTLWRLRRATARVSCFVAEWPGAYWLAVECAGGELLASETLPSVEAVMTRSDETRSAWLRQGWTEE
Ga0316617_1018227032	3300033557	Soil	TVGLFNGEALTLWRLRRGATRISCFVAEWPGAYWLAVECAGGELISSDTLATIDDVLVRSDEDRSARLRDGWTEE
Ga0373890_036127_109_363	3300034053	Sediment Slurry	VQPEPIRPATVGLFNGEALTLWRLRRGATRISCFVAEWPGAYWLAVECAGGELISSDTLATIDDVLVRSDQDRSARLRDGWIEE
Ga0373895_052079_410_613	3300034075	Sediment Slurry	MLDLTPYYNRRVQPEPTRPAAVGLFNGEAVTLWRLRRGRTRISCFVAEWPGAYWLAVECAGGELLASE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F060100

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences