Metagenome / Metatranscriptome Family F060014

Overview

Basic Information

• Family ID: F060014
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 133
• Average Sequence Length: 46 residues
• Representative Sequence: MTSACEATTRALPGAAVIELSGEVDGSAAAVLTDAYERAVTA
• Number of Associated Samples: 121
• Number of Associated Scaffolds: 133

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 96.99 %
• % of genes near scaffold ends (potentially truncated): 98.50 %
• % of genes from short scaffolds (< 2000 bps): 91.73 %
• Associated GOLD sequencing projects: 119
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.63

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (99.248 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (23.308 % of family members)
• Environment Ontology (ENVO): Unclassified (18.797 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (49.624 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Fibrous
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 20.00%
  β-sheet: 20.00%
  Coil/Unstructured: 60.00%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 133 Family Scaffolds
PF13581	HATPase_c_2	74.44
PF07228	SpoIIE	17.29
PF13191	AAA_16	2.26
PF03704	BTAD	0.75
PF13466	STAS_2	0.75
PF08281	Sigma70_r4_2	0.75
PF01740	STAS	0.75
PF06271	RDD	0.75
PF04542	Sigma70_r2	0.75

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 133 Family Scaffolds
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.75
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.75
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.75
COG1714	Uncharacterized membrane protein YckC, RDD family	Function unknown [S]	0.75
COG3629	DNA-binding transcriptional regulator DnrI/AfsR/EmbR, SARP family, contains BTAD domain	Transcription [K]	0.75
COG3947	Two-component response regulator, SAPR family, consists of REC, wHTH and BTAD domains	Transcription [K]	0.75
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.75

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.25 %
Unclassified	root	N/A	0.75 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	99.25 %
Unclassified	root	N/A	0.75 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	99.25 %
Unclassified	root	N/A	0.75 %

Level 4

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	73.68 %
Unclassified	root	N/A	0.75 %

Level 5

Name	Rank	Taxonomy	Distribution
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	13.53 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6.02 %
Unclassified	root	N/A	0.75 %

Level 6

Name	Rank	Taxonomy	Distribution
Ktedonobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria	13.53 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2.26 %
Nitriliruptoria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria	0.75 %
Unclassified	root	N/A	0.75 %

Level 7

Name	Rank	Taxonomy	Distribution
Ktedonobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales	13.53 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.75 %
Nitriliruptorales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales	0.75 %
Unclassified	root	N/A	0.75 %

Level 8

Name	Rank	Taxonomy	Distribution
Ktedonobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae	13.53 %
Nitriliruptoraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → Nitriliruptoraceae	0.75 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.75 %
Unclassified	root	N/A	0.75 %

Level 9

Name	Rank	Taxonomy	Distribution
Ktedonobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter	13.53 %
Nitriliruptor	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → Nitriliruptoraceae → Nitriliruptor	0.75 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.75 %
Unclassified	root	N/A	0.75 %

Level 10

Name	Rank	Taxonomy	Distribution
Ktedonobacter racemifer	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → Ktedonobacter racemifer	13.53 %
Nitriliruptor alkaliphilus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → Nitriliruptoraceae → Nitriliruptor → Nitriliruptor alkaliphilus	0.75 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.75 %
Unclassified	root	N/A	0.75 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300001449|JGI20208J14878_1034745	All Organisms → cellular organisms → Bacteria → Terrabacteria group	509
3300004631|Ga0058899_10028082	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → Ktedonobacter racemifer	886
3300005331|Ga0070670_101494840	All Organisms → cellular organisms → Bacteria	620
3300005339|Ga0070660_100373520	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → Ktedonobacter racemifer	1176
3300005365|Ga0070688_101073441	All Organisms → cellular organisms → Bacteria	643
3300005435|Ga0070714_100692941	All Organisms → cellular organisms → Bacteria → Terrabacteria group	983
3300005437|Ga0070710_10653224	All Organisms → cellular organisms → Bacteria	737
3300005471|Ga0070698_101337500	All Organisms → cellular organisms → Bacteria → Terrabacteria group	667
3300005541|Ga0070733_10290334	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → Ktedonobacter racemifer	1080
3300005587|Ga0066654_10399235	All Organisms → cellular organisms → Bacteria	750
3300005944|Ga0066788_10131757	All Organisms → cellular organisms → Bacteria → Terrabacteria group	630
3300005994|Ga0066789_10170592	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → Ktedonobacter racemifer	921
3300006028|Ga0070717_10889760	All Organisms → cellular organisms → Bacteria	810
3300006354|Ga0075021_11129003	All Organisms → cellular organisms → Bacteria → Terrabacteria group	514
3300009012|Ga0066710_102094508	All Organisms → cellular organisms → Bacteria → Terrabacteria group	832
3300009520|Ga0116214_1213068	All Organisms → cellular organisms → Bacteria → Terrabacteria group	729
3300010301|Ga0134070_10446513	All Organisms → cellular organisms → Bacteria → Terrabacteria group	517
3300010326|Ga0134065_10096688	All Organisms → cellular organisms → Bacteria	975
3300010359|Ga0126376_12441042	All Organisms → cellular organisms → Bacteria → Terrabacteria group	570
3300010371|Ga0134125_11110850	All Organisms → cellular organisms → Bacteria	865
3300010373|Ga0134128_11768589	All Organisms → cellular organisms → Bacteria → Terrabacteria group	680
3300010398|Ga0126383_10656325	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → Ktedonobacter racemifer	1125
3300010865|Ga0126346_1093025	All Organisms → cellular organisms → Bacteria → Terrabacteria group	712
3300010876|Ga0126361_10042843	All Organisms → cellular organisms → Bacteria → Terrabacteria group	511
3300011411|Ga0153933_1069636	All Organisms → cellular organisms → Bacteria → Terrabacteria group	751
3300012089|Ga0153924_1047429	All Organisms → cellular organisms → Bacteria	839
3300012206|Ga0137380_11777623	All Organisms → cellular organisms → Bacteria → Terrabacteria group	500
3300012285|Ga0137370_10622901	All Organisms → cellular organisms → Bacteria → Terrabacteria group	668
3300012356|Ga0137371_10890340	All Organisms → cellular organisms → Bacteria → Terrabacteria group	677
3300012361|Ga0137360_10829986	All Organisms → cellular organisms → Bacteria → Terrabacteria group	796
3300012917|Ga0137395_10290822	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → Ktedonobacter racemifer	1155
3300012985|Ga0164308_10512442	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → Ktedonobacter racemifer	1006
3300013105|Ga0157369_11224383	All Organisms → cellular organisms → Bacteria	766
3300014150|Ga0134081_10156523	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	751
3300014157|Ga0134078_10319370	All Organisms → cellular organisms → Bacteria → Terrabacteria group	674
3300014166|Ga0134079_10645943	All Organisms → cellular organisms → Bacteria → Terrabacteria group	532
3300014501|Ga0182024_12967206	Not Available	501
3300015371|Ga0132258_10591399	All Organisms → cellular organisms → Bacteria	2785
3300016357|Ga0182032_10961294	All Organisms → cellular organisms → Bacteria → Terrabacteria group	728
3300017926|Ga0187807_1082887	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → Ktedonobacter racemifer	1003
3300017961|Ga0187778_11254821	All Organisms → cellular organisms → Bacteria → Terrabacteria group	520
3300017975|Ga0187782_10623883	All Organisms → cellular organisms → Bacteria	829
3300017995|Ga0187816_10340436	All Organisms → cellular organisms → Bacteria → Terrabacteria group	662
3300018009|Ga0187884_10475842	All Organisms → cellular organisms → Bacteria → Terrabacteria group	501
3300018013|Ga0187873_1344679	All Organisms → cellular organisms → Bacteria → Terrabacteria group	545
3300018044|Ga0187890_10817993	All Organisms → cellular organisms → Bacteria → Terrabacteria group	527
3300018062|Ga0187784_10552042	All Organisms → cellular organisms → Bacteria	927
3300020070|Ga0206356_10232747	All Organisms → cellular organisms → Bacteria → Terrabacteria group	531
3300020081|Ga0206354_10420269	All Organisms → cellular organisms → Bacteria	890
3300020081|Ga0206354_10962912	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → Ktedonobacter racemifer	1391
3300020579|Ga0210407_11094866	All Organisms → cellular organisms → Bacteria → Terrabacteria group	604
3300020579|Ga0210407_11324565	All Organisms → cellular organisms → Bacteria → Terrabacteria group	537
3300020580|Ga0210403_11246754	All Organisms → cellular organisms → Bacteria → Terrabacteria group	570
3300020581|Ga0210399_10748873	All Organisms → cellular organisms → Bacteria	801
3300020583|Ga0210401_10846299	All Organisms → cellular organisms → Bacteria → Terrabacteria group	774
3300021170|Ga0210400_10442085	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → Ktedonobacter racemifer	1073
3300021180|Ga0210396_10965087	All Organisms → cellular organisms → Bacteria → Terrabacteria group	724
3300021361|Ga0213872_10339603	All Organisms → cellular organisms → Bacteria → Terrabacteria group	618
3300021388|Ga0213875_10418480	All Organisms → cellular organisms → Bacteria → Terrabacteria group	640
3300021420|Ga0210394_10776857	All Organisms → cellular organisms → Bacteria	837
3300021420|Ga0210394_11146467	All Organisms → cellular organisms → Bacteria → Terrabacteria group	669
3300021474|Ga0210390_10020340	All Organisms → cellular organisms → Bacteria	5397
3300021477|Ga0210398_10926231	All Organisms → cellular organisms → Bacteria → Terrabacteria group	697
3300022531|Ga0242660_1099267	All Organisms → cellular organisms → Bacteria → Terrabacteria group	710
3300022531|Ga0242660_1213581	All Organisms → cellular organisms → Bacteria → Terrabacteria group	535
3300022533|Ga0242662_10093691	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	847
3300024232|Ga0247664_1074603	All Organisms → cellular organisms → Bacteria	783
3300025633|Ga0208480_1002622	All Organisms → cellular organisms → Bacteria	6321
3300025898|Ga0207692_10533295	All Organisms → cellular organisms → Bacteria	748
3300025905|Ga0207685_10233857	All Organisms → cellular organisms → Bacteria	881
3300025918|Ga0207662_10030542	All Organisms → cellular organisms → Bacteria	3127
3300025928|Ga0207700_10994324	All Organisms → cellular organisms → Bacteria → Terrabacteria group	751
3300025937|Ga0207669_10163161	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → Ktedonobacter racemifer	1577
3300025949|Ga0207667_10990831	All Organisms → cellular organisms → Bacteria	828
3300026067|Ga0207678_10033684	All Organisms → cellular organisms → Bacteria	4462
3300026291|Ga0209890_10237878	All Organisms → cellular organisms → Bacteria → Terrabacteria group	571
3300026322|Ga0209687_1100887	All Organisms → cellular organisms → Bacteria	937
3300026356|Ga0257150_1006996	All Organisms → cellular organisms → Bacteria	1510
3300026467|Ga0257154_1050692	All Organisms → cellular organisms → Bacteria → Terrabacteria group	643
3300026496|Ga0257157_1084654	All Organisms → cellular organisms → Bacteria → Terrabacteria group	549
3300026550|Ga0209474_10650367	All Organisms → cellular organisms → Bacteria → Terrabacteria group	543
3300027050|Ga0209325_1024472	All Organisms → cellular organisms → Bacteria → Terrabacteria group	712
3300027076|Ga0208860_1001130	All Organisms → cellular organisms → Bacteria	1786
3300027505|Ga0209218_1034928	All Organisms → cellular organisms → Bacteria	988
3300027641|Ga0208827_1092121	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → Ktedonobacter racemifer	917
3300027787|Ga0209074_10191750	All Organisms → cellular organisms → Bacteria → Terrabacteria group	762
3300027855|Ga0209693_10441612	All Organisms → cellular organisms → Bacteria → Terrabacteria group	626
3300027862|Ga0209701_10718323	All Organisms → cellular organisms → Bacteria → Terrabacteria group	513
3300027911|Ga0209698_10302382	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → Ktedonobacter racemifer	1266
3300028072|Ga0247675_1047775	All Organisms → cellular organisms → Bacteria → Terrabacteria group	635
3300028780|Ga0302225_10449341	All Organisms → cellular organisms → Bacteria → Terrabacteria group	603
3300028781|Ga0302223_10271023	All Organisms → cellular organisms → Bacteria → Terrabacteria group	561
3300028789|Ga0302232_10018510	All Organisms → cellular organisms → Bacteria	3982
3300028789|Ga0302232_10577717	All Organisms → cellular organisms → Bacteria → Terrabacteria group	552
3300028806|Ga0302221_10551295	All Organisms → cellular organisms → Bacteria → Terrabacteria group	503
3300028877|Ga0302235_10227611	All Organisms → cellular organisms → Bacteria	816
3300028879|Ga0302229_10154908	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → Ktedonobacter racemifer	1060
3300029882|Ga0311368_10756218	All Organisms → cellular organisms → Bacteria → Terrabacteria group	666
3300030056|Ga0302181_10088731	All Organisms → cellular organisms → Bacteria	1549
3300030056|Ga0302181_10453229	All Organisms → cellular organisms → Bacteria → Terrabacteria group	546
3300030494|Ga0310037_10197867	All Organisms → cellular organisms → Bacteria	892
3300030524|Ga0311357_11365096	All Organisms → cellular organisms → Bacteria	605
3300030677|Ga0302317_10444963	All Organisms → cellular organisms → Bacteria → Terrabacteria group	568
3300030738|Ga0265462_12187147	All Organisms → cellular organisms → Bacteria → Terrabacteria group	544
3300030862|Ga0265753_1068268	All Organisms → cellular organisms → Bacteria → Terrabacteria group	666
3300031040|Ga0265754_1038805	All Organisms → cellular organisms → Bacteria → Terrabacteria group	517
3300031233|Ga0302307_10349393	All Organisms → cellular organisms → Bacteria → Terrabacteria group	754
3300031234|Ga0302325_10111369	All Organisms → cellular organisms → Bacteria	5075
3300031234|Ga0302325_10469599	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → Ktedonobacter racemifer	1918
3300031525|Ga0302326_10059759	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	7168
3300031525|Ga0302326_12021917	All Organisms → cellular organisms → Bacteria → Terrabacteria group	743
3300031680|Ga0318574_10291565	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → Ktedonobacter racemifer	948
3300031680|Ga0318574_10361076	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → Nitriliruptoraceae → Nitriliruptor → Nitriliruptor alkaliphilus	847
3300031682|Ga0318560_10318091	All Organisms → cellular organisms → Bacteria	839
3300031715|Ga0307476_11074403	All Organisms → cellular organisms → Bacteria → Terrabacteria group	591
3300031718|Ga0307474_11612056	All Organisms → cellular organisms → Bacteria → Terrabacteria group	510
3300031724|Ga0318500_10156315	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → Ktedonobacter racemifer	1075
3300031748|Ga0318492_10061473	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → Ktedonobacter racemifer	1779
3300031768|Ga0318509_10697616	All Organisms → cellular organisms → Bacteria → Terrabacteria group	563
3300031782|Ga0318552_10162834	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1123
3300031823|Ga0307478_11516556	All Organisms → cellular organisms → Bacteria → Terrabacteria group	554
3300031910|Ga0306923_12215489	All Organisms → cellular organisms → Bacteria → Terrabacteria group	551
3300031942|Ga0310916_11316388	All Organisms → cellular organisms → Bacteria → Terrabacteria group	594
3300032008|Ga0318562_10874646	All Organisms → cellular organisms → Bacteria → Terrabacteria group	513
3300032054|Ga0318570_10407296	All Organisms → cellular organisms → Bacteria → Terrabacteria group	620
3300032055|Ga0318575_10029142	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2400
3300032515|Ga0348332_14776040	All Organisms → cellular organisms → Bacteria → Terrabacteria group	570
3300032895|Ga0335074_10022872	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	8812
3300032895|Ga0335074_10159147	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2839
3300032895|Ga0335074_11343540	All Organisms → cellular organisms → Bacteria → Terrabacteria group	585
3300032896|Ga0335075_11229970	All Organisms → cellular organisms → Bacteria → Terrabacteria group	647
3300032955|Ga0335076_10810210	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	818
3300032955|Ga0335076_11035608	All Organisms → cellular organisms → Bacteria → Terrabacteria group	703

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.73%
Host-Associated	Host-Associated	8.27%

Class

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	86.47%
Plants	Host-Associated → Plants	6.77%
Aquatic	Environmental → Aquatic	5.26%
Fungi	Host-Associated → Fungi	1.50%

Category

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	72.93%
Peat	Environmental → Terrestrial → Peat	12.78%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.51%
Freshwater	Environmental → Aquatic → Freshwater	3.76%
Sediment	Environmental → Aquatic → Sediment	1.50%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.50%
Mycelium	Host-Associated → Fungi → Mycelium	1.50%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.75%
Roots	Host-Associated → Plants → Roots	0.75%

Type

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	52.63%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	12.78%
Loam	Environmental → Terrestrial → Soil → Loam	10.53%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	9.77%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.76%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.01%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.50%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	1.50%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.75%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.75%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.75%

Subtype

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	27.07%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.30%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	12.78%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	6.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.77%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.76%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.01%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	3.01%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.01%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.26%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.50%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.50%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	1.50%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.75%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.75%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.75%

Habitat

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	23.31%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	12.78%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.51%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	4.51%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.51%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.76%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.01%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	2.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.26%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.26%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	2.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.26%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.26%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.26%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	2.26%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.50%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.50%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.50%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.50%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	1.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.50%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.50%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.50%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	1.50%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	1.50%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.75%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.75%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.75%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.75%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.75%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.75%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.75%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.75%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.75%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.75%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.75%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.75%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.75%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300001449	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-3 shallow	Environmental
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental
3300005944	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-048	Environmental
3300005994	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049	Environmental
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental
3300010865	Boreal forest soil eukaryotic communities from Alaska, USA - C3-3 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental
3300010876	Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental
3300011411	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ017 MetaG	Host-Associated
3300012089	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ008 MetaG	Host-Associated
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated
3300014150	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaG	Environmental
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental
3300014166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015	Environmental
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental
3300017926	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2	Environmental
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental
3300018009	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_40	Environmental
3300018013	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_100	Environmental
3300018044	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10	Environmental
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental
3300020081	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2)	Environmental
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental
3300021361	Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2	Host-Associated
3300021388	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8	Host-Associated
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental
3300022531	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2)	Environmental
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental
3300024232	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK05	Environmental
3300025633	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-1 shallow-092012 (SPAdes)	Environmental
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated
3300026291	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049 (SPAdes)	Environmental
3300026322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136 (SPAdes)	Environmental
3300026356	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-A	Environmental
3300026467	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-A	Environmental
3300026496	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-69-A	Environmental
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental
3300027050	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M1 (SPAdes)	Environmental
3300027076	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF012 (SPAdes)	Environmental
3300027505	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O3 (SPAdes)	Environmental
3300027641	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG (SPAdes)	Environmental
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental
3300028072	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK16	Environmental
3300028780	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2	Environmental
3300028781	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_3	Environmental
3300028789	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_3	Environmental
3300028806	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_1	Environmental
3300028877	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_3	Environmental
3300028879	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_3	Environmental
3300029882	III_Palsa_E1 coassembly	Environmental
3300030056	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_3	Environmental
3300030494	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)	Environmental
3300030524	II_Palsa_N3 coassembly	Environmental
3300030677	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N3_3	Environmental
3300030738	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VDE Co-assembly	Environmental
3300030862	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE5 (Metagenome Metatranscriptome)	Environmental
3300031040	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE6 (Metagenome Metatranscriptome)	Environmental
3300031233	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_2	Environmental
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI20208J14878_10347452	3300001449	Arctic Peat Soil	MKKNCEAAVHAVGGAAVIELAGEVDGGAAGVLNAA
Ga0058899_100280823	3300004631	Forest Soil	MASMCEATTRVLPGAAVIELSGEVDGSAADVLTNAYQTAVGTHADLGT
Ga0070670_1014948401	3300005331	Switchgrass Rhizosphere	MTSACEATTRTLSGAAVIELSGEVDGSAAAVLTDAYERAVTASPENHDT
Ga0070660_1003735201	3300005339	Corn Rhizosphere	MTSACEATTRALPGAAVIELSGEVDGSAAAVLTDAYERAVTAS
Ga0070688_1010734411	3300005365	Switchgrass Rhizosphere	MTSACEATTRTLSGAAVIELSGEVDGSAAAVLTDAYERAVTASPENHD
Ga0070714_1006929413	3300005435	Agricultural Soil	MASMCEATTRVLPGAAVIELSGEVDGSAATVLTDAYAQAVTPD
Ga0070710_106532243	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MTSACEATTRTLPGAAVIELSGEVDGSAAAVLTDAYERAVTASPENHD
Ga0070698_1013375002	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MASMCEATTRVLPGAAVIELSGEVDGSAADVLTNAYQTAV
Ga0070733_102903341	3300005541	Surface Soil	MTSACEATTRVLPGTAVIELSGEVDGSAATVLTDAYARAVTPDSDPGTVVLD
Ga0066654_103992353	3300005587	Soil	MTSACEATTRALPGAAVIELSGEVDGSAAAVLTDAYERAVTAGPEAQDTVVLDFAAV
Ga0066788_101317572	3300005944	Soil	MTSMCEATTRVLPGAAVIELAGEVDGSAADVLNAAYERVVTASADSADLDTVVLDFAA
Ga0066789_101705921	3300005994	Soil	MKKACEASVRALPGAAVIELTGEVDGGAAGVLTAAYERA
Ga0070717_108897601	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MTSACEATTRALPGAAVIELSGEVDGSAAPVLTDAY
Ga0075021_111290031	3300006354	Watersheds	MTSACEATTRALPGAAVIELSGEVDGSAAAILTEAYERAVTTGPENHDT
Ga0066710_1020945083	3300009012	Grasslands Soil	MTSACEATTRALPGAAIIELSGEVDGAAATVLTDAYERAITASADAQDTVVLDFAAVDYI
Ga0116214_12130683	3300009520	Peatlands Soil	MCEATTRALPGAAVIELSGEVDGSAATVLTEAYAQAVTPDSD
Ga0134070_104465132	3300010301	Grasslands Soil	MTSACEATTRALPGAAVIELSGEVDGSAAAVLTEAYERAVTAG
Ga0134065_100966881	3300010326	Grasslands Soil	MTSACEATTRALPGAAVIELSGEVDGSAATVMTDAYERAVTAGPESHDTVVLDSSM
Ga0126376_124410421	3300010359	Tropical Forest Soil	VLPGAAVIELSGEVDGSAATVLTEAYERAVEASPENHDTV
Ga0134125_111108501	3300010371	Terrestrial Soil	MTSACEATTRALPGAAVIELSGEVDGSAAAVLTDAYERAVTASPENHDTVVLDF
Ga0134128_117685893	3300010373	Terrestrial Soil	MTTACEATTRTLPGAAVIELSGEVDGSAAAVLTDAYERAVTASPEN
Ga0126383_106563251	3300010398	Tropical Forest Soil	MTSACEATTRVLPGAAVIELSGEVDGSAATVLTEAYERAVETSPENHDTV
Ga0126346_10930253	3300010865	Boreal Forest Soil	MTSACEATTRVLPGTAVIELSGEVDGSAATVLTTAYERAVTEG
Ga0126361_100428432	3300010876	Boreal Forest Soil	MCEATTRVLPGAAVIELSGEVDGSAADVLTNAYQTAVGTHADLS
Ga0153933_10696361	3300011411	Attine Ant Fungus Gardens	MCEATTRVLPGAAVIELSGEVDGSAADVLTDAYVSAVGTSA
Ga0153924_10474291	3300012089	Attine Ant Fungus Gardens	MASTCEATTRIVPGAAVIELSGDIDGSAAAILTAAYAEAVNGDSPEALGTVVLDFAAVDY
Ga0137380_117776232	3300012206	Vadose Zone Soil	MTSACEATTRALPGAAVIELSGEVDGSAAKVLTDAY
Ga0137370_106229011	3300012285	Vadose Zone Soil	MTSACEATTRALPGAAVIELSGEVDGSAAVVLTDAYERAVTAGP
Ga0137371_108903403	3300012356	Vadose Zone Soil	MTSACEATTRALPGAAVIELSGEVDGSAAAVLTDAYERA
Ga0137360_108299863	3300012361	Vadose Zone Soil	MCEATTRVLPGAAVIELSGEVDGSAAAVLTDAYERAVSAGGDGAGSDLGTVVLDFAVVNYTNST
Ga0137395_102908221	3300012917	Vadose Zone Soil	MCEATTRVLPGAAVIELSGEVDGSAAKVLTDAYERGVTESPETQGT
Ga0164308_105124421	3300012985	Soil	MTSACEATTRALPGAAVIELSGEVDGSAAAVLTDAYERAVTASPETPAT
Ga0157369_112243833	3300013105	Corn Rhizosphere	MTSACEATTRALPGAAVIELSGEVDGSAAAVLTDAYERAVTASPENHDTVV
Ga0134081_101565232	3300014150	Grasslands Soil	MTSACEATTRALPGAAVIELSGEVDGSAAAVLTDAYERAVTAGPE
Ga0134078_103193701	3300014157	Grasslands Soil	MTSACEATTRALPGAAVIELSGEVDGSAAAVLTDAYERAVTAGPETQDTVVLDFA
Ga0134079_106459432	3300014166	Grasslands Soil	MTSACEATTRALPGAAVIELSGEVDGSAAAVLTDAYERAVTACPESHDT
Ga0182024_129672062	3300014501	Permafrost	VRAVGGAAVIELTGEVDGGAAGVLNAAYEQAVAEGEPGTVVLD
Ga0132258_105913994	3300015371	Arabidopsis Rhizosphere	MTSACEATTRTLPGAAVIELSGEVDGSAATVLTEA
Ga0182032_109612943	3300016357	Soil	MTSACVATTRALPGAAVIELSGEVDGSAAAVLTDAYERAVTAGPET
Ga0187807_10828873	3300017926	Freshwater Sediment	MTSTCEAATRVLPGAAVIELSGEVDGSAATVLTAAYEQAVS
Ga0187778_112548211	3300017961	Tropical Peatland	MTSVCEARTRVLPGAAVIELSGEVDGAAVEVLTAAYEDALGAGTDFGAVVLDFAAVDYINST
Ga0187782_106238831	3300017975	Tropical Peatland	MASMCEATTRIVPGAAVIELSGDVDGSAAAILTSAYDRAVNGHDGPEPVGTVVLDFAAVD
Ga0187816_103404362	3300017995	Freshwater Sediment	MASMCEATTRVLPGAAVIELSGEVDGSAATVLTDAYARAVTPDSDPSTVVLDFS
Ga0187884_104758421	3300018009	Peatland	MTSMCEATTRVLPGAAVIELAGEVDGSAAEVLTAAYKRA
Ga0187873_13446791	3300018013	Peatland	MTSMCEATTRVLPGAAVIELAGEVDGSAAGVLTAAYERAVTASADSADL
Ga0187890_108179932	3300018044	Peatland	MTSMCEATTRVVPGAAVIELSGEVDGSAADVLTDAYATAVGTNADLGTVVLDFA
Ga0187784_105520421	3300018062	Tropical Peatland	MASTCEATTRIVPGAAVIELSGEVDGSAAVVLTKAYESAVSGHDGPDNVGTVVLDFAA
Ga0206356_102327472	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	VQSKCETHIRQLPNCAVIELRGEVDGSAATVLSAAY
Ga0206354_104202693	3300020081	Corn, Switchgrass And Miscanthus Rhizosphere	VQSKCETHIRQLPNCAVIELSGEVDGSAATVLSAAY
Ga0206354_109629121	3300020081	Corn, Switchgrass And Miscanthus Rhizosphere	MTSACEATTRALPGAAVIELSGEVDGSAAAVLTDAYERAVTA
Ga0210407_110948661	3300020579	Soil	MTSACEATTRTLPGAAVIALSGEVDGSAAAVLTAAYERAIKDEPEMSTAVSTV
Ga0210407_113245652	3300020579	Soil	MTSRCDATTRTMPGAAVIELTGEVDGTAADVLTAAYQAA
Ga0210403_112467542	3300020580	Soil	MTSACEATTRALPGAAVIELSGEVDGSAAAVLTEAYER
Ga0210399_107488733	3300020581	Soil	MTSACEATTRALPGAAVIELSGEVDGSAAAILTEAYERAVTTGPE
Ga0210401_108462991	3300020583	Soil	MKKSCEAAVHAVGGTAVIELTGEVDGGAAGVLNAAYEQAVGSGDPGTVVL
Ga0210400_104420851	3300021170	Soil	MTSTCEATTRTLPGAAVIALSGEVDGSAAAVLTAAYERAIKDEPEMSTAVNTV
Ga0210396_109650871	3300021180	Soil	MKKSCEAAVHAVGGTAVIELTGEVDGGAAGVLNAAYEQAVGSGEPGTVVLDF
Ga0213872_103396032	3300021361	Rhizosphere	MASMCEATTRVLPGAAVIELSGEVDGSAADVLTNAYLAAVGTH
Ga0213875_104184802	3300021388	Plant Roots	MTSACEATTRVLPGAAVIELSGEVDGSAATVLTAAYEQAVAVGLEPPSPE
Ga0210394_107768571	3300021420	Soil	MTSRCEATTRTMPGAAVIELTGEVDGTAADVLTAAYQAAVTGTDVGVVVL
Ga0210394_111464672	3300021420	Soil	MTSACEATTRALPGAAVIELSGEVDGSAATVLTDAYERAVTAGAEDQDTVVLDFA
Ga0210390_100203401	3300021474	Soil	MASMCEATTRIVPGAAVIELSGDVDGSAAAILTAAYAEAVNADSP
Ga0210398_109262312	3300021477	Soil	MASTCEATTRVLPGAAVIELSGEVDGSAADVLTNAYQTAVGTHADL
Ga0242660_10992673	3300022531	Soil	MTSACEATTRALPGAAVIELSGEVDGSAAAVLTDAYERAV
Ga0242660_12135811	3300022531	Soil	MTSACEATTRTLPGAAVIELSGEVDGSAAAVLTDAYERAVTAGADSH
Ga0242662_100936911	3300022533	Soil	MTSACEATTRTLSGAAVIELSGEVDGSAAAVLTDAYERAVTASPENHDTV
Ga0247664_10746031	3300024232	Soil	MTTACEATTRTLPGAAVIELSGEVDGSAAAVLTDAYER
Ga0208480_10026225	3300025633	Arctic Peat Soil	MKEAAMKKSCEAAVHPVGGAAVIELTGEVDGGAAGVLNAAYEQA
Ga0207692_105332953	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MTSACEATTRALPGAAVIELSGEVDGSAAAVLTEAYE
Ga0207685_102338573	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MTSACEATTRALPGAAVIELSGEVDGSAAAVLTDAYERAVTASPENHDTVVL
Ga0207662_100305421	3300025918	Switchgrass Rhizosphere	MTSACEATTRALPGAAVIELSGEVDGSAATVLTDAYERAVTASPENH
Ga0207700_109943243	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MASMCEAKTRVVPGAAVIELSGEVDGSAADVLTDAYAAAVDHDA
Ga0207669_101631613	3300025937	Miscanthus Rhizosphere	MTSACEATTRALPGAAVIELSGEVDGSAAAVLTDAYE
Ga0207667_109908313	3300025949	Corn Rhizosphere	MTSACEATTRALPGAAVIELSGEVDGSAAAVLTEAYERAVTA
Ga0207678_100336841	3300026067	Corn Rhizosphere	MTSACEATTRALPGAAVIELSGEVDGSAAAVLTDAYERAVTASPENHDTVVLDFA
Ga0209890_102378781	3300026291	Soil	MKKACEASVRALPGAAVIELTGEVDGGAAGVLTAAYERAIA
Ga0209687_11008872	3300026322	Soil	VQSKCETSIRSLPGCAVIELRGEVDGSAAATLSAAYDGAA
Ga0257150_10069963	3300026356	Soil	MASMCEATTRVLPGAAVIELSGEVDGSAADVLTNAYQA
Ga0257154_10506921	3300026467	Soil	MASMCEATTRVLPGAAVIELSGEVDGSAADVLTNAYQAAVGTHA
Ga0257157_10846541	3300026496	Soil	MASMCEATTRVLPGAAVIELSGEVDGSAADVLTNAYQSAVG
Ga0209474_106503672	3300026550	Soil	MTSACEATTRALPGAAVIELSGEVDGSAAAVLTDAY
Ga0209325_10244723	3300027050	Forest Soil	MTSACEATTRTLPGAAVIELSGEVDGSAAAVLTDAYERA
Ga0208860_10011303	3300027076	Forest Soil	MASMCEATTRVLPGAAVIELSGEVDGSAADVLTNAY
Ga0209218_10349281	3300027505	Forest Soil	MTSRCEATTRTMPGAAVIELTGEVDGTAADVLTAAYQAAVTGTDVGIVVLD
Ga0208827_10921211	3300027641	Peatlands Soil	MASMCEATTRVLPGAAVIELSGEVDGSAADVLTNAYQAVAQ
Ga0209074_101917503	3300027787	Agricultural Soil	MTSACEATTRALPGAAVIELSGEVDGSAAAVLTDAYERAVTAGPDSHDTVVLD
Ga0209693_104416122	3300027855	Soil	MASMCEATTRVLPGAAVIELSGEVDGSAADVLTDAYRSAVGTNADLGTVV
Ga0209701_107183232	3300027862	Vadose Zone Soil	MTSTCEAATRVLPGAAVIELSGEVDGSAAAVLIGAYERA
Ga0209698_103023821	3300027911	Watersheds	MASMCEATTRVLPGAAVIELSGEVDGSAADVLTNAYQTAVGTDADL
Ga0247675_10477752	3300028072	Soil	MTTACEATTRTLPGAAVIELSGEVDGSAAAVLTDAYERAVTASPENHDTVVL
Ga0302225_104493412	3300028780	Palsa	MTSMCEATTRVLPGAAIIELAGEVDGSAAEVLTDAYKRAVSASAESGDLGTVVLD
Ga0302223_102710231	3300028781	Palsa	MTSMCEATTRVLPGAAVIELAGEVDGSAAEVLTGAYKRAVAASADSADIGTVVLD
Ga0302232_100185104	3300028789	Palsa	MTSMCEATTRVLPGAAIIELAGEVDGSAAEVLTDAY
Ga0302232_105777172	3300028789	Palsa	MTSMCEATTRVLPGAAVIELAGEVDGSAAAVLTAAYERAVTASADSADLGTVVLDFA
Ga0302221_105512951	3300028806	Palsa	MTSMCEATTRVLPGAAVIELAGEVDGSAAEVLTAAYKRAV
Ga0302235_102276111	3300028877	Palsa	MTSMCEATTRVLPGAAVIELAGEVDGSAAAVLTDAYERAVTASADSA
Ga0302229_101549081	3300028879	Palsa	MTSMCEATTRVLPGAAVIELAGEVDGSAAAVLTDAYERAVTASADSADLGTIVLDFAAVDYI
Ga0311368_107562182	3300029882	Palsa	MTSMCEATTRALPGAAVIELAGEVDGSAAAVLTAAYERAVTAR
Ga0302181_100887311	3300030056	Palsa	MTSMCEATTRVLPGAAVIELAGEVDGSAAEVLTGAYKRAVAASADSADIGTVVL
Ga0302181_104532291	3300030056	Palsa	MTSMCEATTRVLPGAAVIELAGEVDGSAAAVLTAAYERAVTASADSADL
Ga0310037_101978671	3300030494	Peatlands Soil	MASMCEATTRVLPGAAVIELSGEVDGSAADVLTNAYQTAVGTDADLGT
Ga0311357_113650962	3300030524	Palsa	MTSMCEATTRVLPGAAVIELAGEVDGSAAEVLTAAYKRAVAASADSADLGTVVLDFAAVD
Ga0302317_104449632	3300030677	Palsa	MTSMCEATTRALPGAAVIELRGEVDGSAAAVLNAAYERAVEAGHAADSDP
Ga0265462_121871472	3300030738	Soil	MCEATTRALPGAAVIELAGEVDGSAATVLTAAYKIK
Ga0265753_10682682	3300030862	Soil	MASMCEATTRVLPGAAIIELSGEVDGAAADVLTNAYQSAVGTHA
Ga0265754_10388052	3300031040	Soil	MASMCEATTRVLPGAAVIELSGEVDGSAADVLTNAYQ
Ga0302307_103493933	3300031233	Palsa	MTSMCEATTRVLPGAAIIELAGEVDGSAAEVLTDAYKRAVTASA
Ga0302325_101113694	3300031234	Palsa	MKRACEASVRALPGAAVIELTGEVDGGAAGVLTAAYERAIADGEP
Ga0302325_104695993	3300031234	Palsa	MASTCEATTRAVPGAAVIELSGEVDGSAADVLTDAYAQAVGGDAALGTVV
Ga0302326_100597591	3300031525	Palsa	MASMCEATTRVLPGAAVIELSGEVDGSAADVLTDAYRNA
Ga0302326_120219173	3300031525	Palsa	MTSMCEATTRVLPGAAVIELAGEVDGSAAAVLTAAYE
Ga0318574_102915651	3300031680	Soil	MTSACEATTRALPGAAVIELSGEVDGSAAAVLTEAYERAVAASPEDHDTV
Ga0318574_103610763	3300031680	Soil	MASMCEAMTRVLPGAAVIELSGEVDGSAAAVLTDAYQR
Ga0318560_103180911	3300031682	Soil	MASMCEATTRVLPGAAVIELSGEVDGSAADVLTNAYQSAVGTHADLG
Ga0307476_110744032	3300031715	Hardwood Forest Soil	MKKSCEAAVHAVGGTAVIELTGEVDGGAAGVLNAAYEQAVGSGEPGTVV
Ga0307474_116120561	3300031718	Hardwood Forest Soil	MKKTCEAAVHAVGGAAVIELAGEVDGGAAGVFNAAYEQA
Ga0318500_101563151	3300031724	Soil	MASMCEATTRVLPGAAIIELSGEVDGSAADVLTRAYQSAVGAQADLG
Ga0318492_100614731	3300031748	Soil	MTSACEATTRALPGAAVIELSGEVDGSAAAVLTEAYERAVAASP
Ga0318509_106976161	3300031768	Soil	MASMCEATTRVLPGAAIIELSGEVDGSAATVLTDAYAQAV
Ga0318552_101628343	3300031782	Soil	MMSTCEATTRSLPGAAVIELSGEVDGTAAAVLTEAYERAVTASP
Ga0307478_115165561	3300031823	Hardwood Forest Soil	MKKSCEAAVHAVGGAAVIELTGEVDGGAAGVLNAAY
Ga0306923_122154892	3300031910	Soil	MASMCEAMTRVLPGAAVIELSGEVDGSAAAVLTDAYQRAVTPETDPGTVVLDFAA
Ga0310916_113163881	3300031942	Soil	MTSACEATTRALPGAAVIELSGEVDGSAAAVLTEAYERAVAA
Ga0318562_108746462	3300032008	Soil	MASMCKATTRALPGAAVIELSGEVDGSAAAVLTDAYQRAVTLGDPGTVVLDF
Ga0318570_104072961	3300032054	Soil	MTSACEATTRALPGAAVIELSGEVDGSAATVLTEAYERA
Ga0318575_100291421	3300032055	Soil	MASMCEATTRVLPGAAIIELSGEVDGSAATVLTDAYAQAVTPDT
Ga0348332_147760402	3300032515	Plant Litter	MTSTCEAATRVLPGAAVIELSGEVDGSAATVLTAAYEQAVGAG
Ga0335074_100228729	3300032895	Soil	MASMCEATTRVLPGAAVIELSGEVDGSAATVLTDAYAQAVTPDSDPSTV
Ga0335074_101591471	3300032895	Soil	MASMCEATTRVLPGAAVIELSGEVDGSAADVLTGAYQSAVGTSADLGTVVLDFA
Ga0335074_113435401	3300032895	Soil	MTSRCDATTRTMPGAAVIELSGEVDGTAADVLTAAYQAAVTG
Ga0335075_112299702	3300032896	Soil	MPSVCEATTRVLPGAAVIELTGEVDGSAATVLTSAYLTAVG
Ga0335076_108102101	3300032955	Soil	MKKTCEAVVHTVADAAVIELTGEVDGAAAGVLTAAYEDAV
Ga0335076_110356083	3300032955	Soil	MTSTCEAATRVLPGAAVIELSGEVDGSAVTVLTAAYEQAVGAAPDL