Metagenome Family F060001

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F060001
Family Type	Metagenome
Number of Sequences	133
Average Sequence Length	88 residues
Representative Sequence	VLTLKVCSVSVAFGTASFFMADNDRTVRVDVCQRLLASLEEPAPTTKAQYAKRLLRYRSRFAQIASAKYDEGQFDLEVNVLVVRISALDLS
Number of Associated Samples	65
Number of Associated Scaffolds	133

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	51.91 %
% of genes near scaffold ends (potentially truncated)	29.32 %
% of genes from short scaffolds (< 2000 bps)	75.94 %
Associated GOLD sequencing projects	58
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.80

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (96.241 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (24.060 % of family members)
Environment Ontology (ENVO)	Unclassified (48.872 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (48.872 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 28.57% β-sheet: 29.41% Coil/Unstructured: 42.02%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.80
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.80
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
d.354.1.1: Shew3726-like	d2gpia1	2gpi	0.80068
d.252.1.1: CheC-like	d1xkra_	1xkr	0.53563
b.69.3.1: Nitrous oxide reductase, N-terminal domain	d6y77a1	6y77	0.53121
d.260.1.0: automated matches	d6lpha_	6lph	0.52573
b.74.1.0: automated matches	d6rqqa_	6rqq	0.52372

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 133 Family Scaffolds
PF07311	Dodecin	10.53
PF04828	GFA	3.01
PF12840	HTH_20	3.01
PF00196	GerE	2.26
PF00581	Rhodanese	2.26
PF02358	Trehalose_PPase	1.50
PF01022	HTH_5	1.50
PF03972	MmgE_PrpD	1.50
PF06776	IalB	0.75
PF13185	GAF_2	0.75
PF13492	GAF_3	0.75
PF13343	SBP_bac_6	0.75
PF00480	ROK	0.75
PF13583	Reprolysin_4	0.75
PF06823	DUF1236	0.75
PF08450	SGL	0.75
PF02586	SRAP	0.75
PF13701	DDE_Tnp_1_4	0.75
PF08028	Acyl-CoA_dh_2	0.75
PF13847	Methyltransf_31	0.75
PF00072	Response_reg	0.75

COG ID	Name	Functional Category	% Frequency in 133 Family Scaffolds
COG3360	Flavin-binding protein dodecin	General function prediction only [R]	10.53
COG3791	Uncharacterized conserved protein	Function unknown [S]	3.01
COG1877	Trehalose-6-phosphate phosphatase	Carbohydrate transport and metabolism [G]	1.50
COG1940	Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain	Transcription [K]	1.50
COG2079	2-methylcitrate dehydratase PrpD	Carbohydrate transport and metabolism [G]	1.50
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.75
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	0.75
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	0.75
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	0.75
COG5342	Invasion protein IalB, involved in pathogenesis	General function prediction only [R]	0.75

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	96.24 %
Unclassified	root	N/A	3.76 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	96.24 %
Unclassified	root	N/A	3.76 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	96.24 %
Unclassified	root	N/A	3.76 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	93.23 %
Unclassified	root	N/A	3.76 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	90.98 %
Unclassified	root	N/A	3.76 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	84.21 %
Unclassified	root	N/A	3.76 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	78.20 %
Unclassified	root	N/A	3.76 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.50 %

Name	Rank	Taxonomy	Distribution
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	78.20 %
Unclassified	root	N/A	3.76 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.50 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	78.20 %
Unclassified	root	N/A	3.76 %
Bradyrhizobium frederickii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium frederickii	0.75 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000550\|F24TB_10957667	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1064	Open in IMG/M
3300000550\|F24TB_12004877	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	565	Open in IMG/M
3300001431\|F14TB_101668873	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	599	Open in IMG/M
3300003911\|JGI25405J52794_10040593	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	983	Open in IMG/M
3300003911\|JGI25405J52794_10071023	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	759	Open in IMG/M
3300004281\|Ga0066397_10015414	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1060	Open in IMG/M
3300004633\|Ga0066395_10794641	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	567	Open in IMG/M
3300005332\|Ga0066388_100310446	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	2223	Open in IMG/M
3300005332\|Ga0066388_100656260	All Organisms → cellular organisms → Bacteria → Proteobacteria	1663	Open in IMG/M
3300005332\|Ga0066388_101468086	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1190	Open in IMG/M
3300005332\|Ga0066388_101660390	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1128	Open in IMG/M
3300005332\|Ga0066388_102110710	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1014	Open in IMG/M
3300005332\|Ga0066388_102535796	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	932	Open in IMG/M
3300005332\|Ga0066388_103058448	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	855	Open in IMG/M
3300005332\|Ga0066388_103622891	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	788	Open in IMG/M
3300005332\|Ga0066388_104569804	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	705	Open in IMG/M
3300005332\|Ga0066388_106283358	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium frederickii	599	Open in IMG/M
3300005341\|Ga0070691_10003311	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7225	Open in IMG/M
3300005441\|Ga0070700_100188867	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1439	Open in IMG/M
3300005444\|Ga0070694_100292378	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1246	Open in IMG/M
3300005455\|Ga0070663_100588755	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	934	Open in IMG/M
3300005455\|Ga0070663_101367769	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	626	Open in IMG/M
3300005549\|Ga0070704_100914173	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	790	Open in IMG/M
3300005713\|Ga0066905_100030631	All Organisms → cellular organisms → Bacteria	3045	Open in IMG/M
3300005713\|Ga0066905_100054885	All Organisms → cellular organisms → Bacteria → Proteobacteria	2464	Open in IMG/M
3300005713\|Ga0066905_100072870	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	2220	Open in IMG/M
3300005713\|Ga0066905_100076727	Not Available	2177	Open in IMG/M
3300005713\|Ga0066905_100088701	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	2059	Open in IMG/M
3300005713\|Ga0066905_100208384	All Organisms → cellular organisms → Bacteria	1468	Open in IMG/M
3300005713\|Ga0066905_100267701	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1323	Open in IMG/M
3300005713\|Ga0066905_100814720	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	811	Open in IMG/M
3300005713\|Ga0066905_102125755	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	522	Open in IMG/M
3300005719\|Ga0068861_100185820	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1733	Open in IMG/M
3300005719\|Ga0068861_100396390	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1224	Open in IMG/M
3300005764\|Ga0066903_100172332	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3169	Open in IMG/M
3300005764\|Ga0066903_100258721	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	2698	Open in IMG/M
3300005764\|Ga0066903_104593238	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	736	Open in IMG/M
3300005843\|Ga0068860_102350391	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	553	Open in IMG/M
3300005937\|Ga0081455_10000161	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	82092	Open in IMG/M
3300005983\|Ga0081540_1000642	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	33163	Open in IMG/M
3300005983\|Ga0081540_1003030	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	13460	Open in IMG/M
3300005983\|Ga0081540_1167842	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	841	Open in IMG/M
3300006358\|Ga0068871_101700598	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	598	Open in IMG/M
3300006806\|Ga0079220_11370656	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	598	Open in IMG/M
3300006844\|Ga0075428_100205280	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	2130	Open in IMG/M
3300006845\|Ga0075421_102529095	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	534	Open in IMG/M
3300006871\|Ga0075434_100021784	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6233	Open in IMG/M
3300006871\|Ga0075434_100274362	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1705	Open in IMG/M
3300006904\|Ga0075424_100533534	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1253	Open in IMG/M
3300009081\|Ga0105098_10645558	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	556	Open in IMG/M
3300009094\|Ga0111539_10097233	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	3459	Open in IMG/M
3300009094\|Ga0111539_10175374	All Organisms → cellular organisms → Bacteria	2504	Open in IMG/M
3300009094\|Ga0111539_12113324	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	653	Open in IMG/M
3300009100\|Ga0075418_10256604	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1862	Open in IMG/M
3300009156\|Ga0111538_10038368	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6184	Open in IMG/M
3300009156\|Ga0111538_10667580	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1317	Open in IMG/M
3300009156\|Ga0111538_12709542	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	621	Open in IMG/M
3300009156\|Ga0111538_13383248	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	554	Open in IMG/M
3300009162\|Ga0075423_10305773	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1666	Open in IMG/M
3300010043\|Ga0126380_10025590	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2910	Open in IMG/M
3300010043\|Ga0126380_10099327	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1741	Open in IMG/M
3300010043\|Ga0126380_10207843	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1317	Open in IMG/M
3300010043\|Ga0126380_10718295	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	806	Open in IMG/M
3300010043\|Ga0126380_11136375	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	668	Open in IMG/M
3300010046\|Ga0126384_10257177	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1415	Open in IMG/M
3300010046\|Ga0126384_10431043	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1121	Open in IMG/M
3300010046\|Ga0126384_10533442	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1017	Open in IMG/M
3300010047\|Ga0126382_10002173	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8285	Open in IMG/M
3300010047\|Ga0126382_10055853	Not Available	2341	Open in IMG/M
3300010047\|Ga0126382_10219705	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1368	Open in IMG/M
3300010047\|Ga0126382_10349164	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1133	Open in IMG/M
3300010047\|Ga0126382_10388966	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1084	Open in IMG/M
3300010047\|Ga0126382_12330192	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	518	Open in IMG/M
3300010358\|Ga0126370_12353651	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	528	Open in IMG/M
3300010360\|Ga0126372_10021824	All Organisms → cellular organisms → Bacteria → Proteobacteria	3800	Open in IMG/M
3300010360\|Ga0126372_10757251	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	956	Open in IMG/M
3300010362\|Ga0126377_10028155	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4717	Open in IMG/M
3300010362\|Ga0126377_10101586	All Organisms → cellular organisms → Bacteria	2624	Open in IMG/M
3300010362\|Ga0126377_10128799	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	2349	Open in IMG/M
3300010362\|Ga0126377_10320342	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1536	Open in IMG/M
3300010362\|Ga0126377_10344364	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1485	Open in IMG/M
3300010362\|Ga0126377_10424378	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1346	Open in IMG/M
3300010362\|Ga0126377_10728008	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1046	Open in IMG/M
3300010362\|Ga0126377_10849347	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	973	Open in IMG/M
3300010362\|Ga0126377_11354447	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	784	Open in IMG/M
3300010362\|Ga0126377_13093356	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	537	Open in IMG/M
3300010400\|Ga0134122_10000317	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	30955	Open in IMG/M
3300010403\|Ga0134123_11899108	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	651	Open in IMG/M
3300012948\|Ga0126375_10625355	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	826	Open in IMG/M
3300012948\|Ga0126375_11281422	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	615	Open in IMG/M
3300012951\|Ga0164300_11008221	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	536	Open in IMG/M
3300012961\|Ga0164302_11069398	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	634	Open in IMG/M
3300012971\|Ga0126369_11468384	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	772	Open in IMG/M
3300012971\|Ga0126369_12104625	Not Available	652	Open in IMG/M
3300012986\|Ga0164304_11636430	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	537	Open in IMG/M
3300014969\|Ga0157376_11280292	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	763	Open in IMG/M
3300015371\|Ga0132258_10011906	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	18245	Open in IMG/M
3300015371\|Ga0132258_11008972	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	2103	Open in IMG/M
3300015372\|Ga0132256_100589934	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1225	Open in IMG/M
3300015372\|Ga0132256_101373043	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	818	Open in IMG/M
3300015374\|Ga0132255_102219400	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	837	Open in IMG/M
3300026067\|Ga0207678_11182761	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	677	Open in IMG/M
3300026075\|Ga0207708_10103499	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	2205	Open in IMG/M
3300026089\|Ga0207648_10480481	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1135	Open in IMG/M
3300027907\|Ga0207428_10022497	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5318	Open in IMG/M
3300027907\|Ga0207428_10606468	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	788	Open in IMG/M
3300027907\|Ga0207428_10740485	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	701	Open in IMG/M
3300027909\|Ga0209382_11342725	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	722	Open in IMG/M
3300028381\|Ga0268264_12527129	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	519	Open in IMG/M
3300031455\|Ga0307505_10485935	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	594	Open in IMG/M
3300031720\|Ga0307469_10148628	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1750	Open in IMG/M
3300031740\|Ga0307468_100024340	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	2752	Open in IMG/M
3300031740\|Ga0307468_100125324	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1591	Open in IMG/M
3300031740\|Ga0307468_101025831	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	728	Open in IMG/M
3300031820\|Ga0307473_11229571	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	558	Open in IMG/M
3300031858\|Ga0310892_10992425	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	591	Open in IMG/M
3300031908\|Ga0310900_10656529	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	835	Open in IMG/M
3300031908\|Ga0310900_10742693	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	789	Open in IMG/M
3300031943\|Ga0310885_10208475	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	970	Open in IMG/M
3300031943\|Ga0310885_10619836	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	601	Open in IMG/M
3300031944\|Ga0310884_10914715	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	542	Open in IMG/M
3300032003\|Ga0310897_10492415	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	593	Open in IMG/M
3300032017\|Ga0310899_10419240	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	645	Open in IMG/M
3300032075\|Ga0310890_10745566	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	771	Open in IMG/M
3300032075\|Ga0310890_11692739	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	524	Open in IMG/M
3300032075\|Ga0310890_11708830	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	522	Open in IMG/M
3300032122\|Ga0310895_10189303	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	917	Open in IMG/M
3300032174\|Ga0307470_10165016	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1374	Open in IMG/M
3300032174\|Ga0307470_10246353	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1177	Open in IMG/M
3300032180\|Ga0307471_100512146	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1349	Open in IMG/M
3300032180\|Ga0307471_100664788	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1205	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	69.92%
Host-Associated	Host-Associated	30.08%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	69.17%
Plants	Host-Associated → Plants	30.08%
Aquatic	Environmental → Aquatic	0.75%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	69.17%
Rhizosphere	Host-Associated → Plants → Rhizosphere	18.80%
Rhizoplane	Host-Associated → Plants → Rhizoplane	10.53%
Freshwater	Environmental → Aquatic → Freshwater	0.75%
Roots	Host-Associated → Plants → Roots	0.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	45.11%
Loam	Environmental → Terrestrial → Soil → Loam	24.06%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	15.04%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.27%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.76%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.26%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.75%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.57%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	18.05%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	15.04%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	9.02%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.27%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.76%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.26%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.26%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.75%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.75%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.75%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	24.06%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	18.05%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	14.29%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	9.02%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.77%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	4.51%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.01%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.01%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.26%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.26%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.26%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.50%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.50%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.75%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.75%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300003911	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300004281	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300005983	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009081	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031455	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 23_S	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300032003	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D1	Environmental	Open in IMG/M
3300032017	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F24TB_109576673	3300000550	Soil	VLTLKVCSVSVAFGTASFFMADNDRTVRVDVCQRLLASLDEPAPTTKAQYAKRLLRYRSRFAQIASAKYDEGQFDLEVNVFVVRISALDLS*
F24TB_120048772	3300000550	Soil	VLNVKMCGISVAFGTASFFMTDNDRTVRVDVCQRLLASLEEPAPTSKAQYASRLLRYRSRFAQIASVKYDEGRFDFEVNVLVVRITADDLS*
F14TB_1016688732	3300001431	Soil	MADNDRTVRVDVCQRLLASLDEPAPTTKAQYAKRLLRYRSRFAQIASAKYDEGQFDLEVNVFVVRISALDLS*
JGI25405J52794_100405932	3300003911	Tabebuia Heterophylla Rhizosphere	VLTLKGCDVSVAFGTASFFMMDSSKTVRVDVCQRLLASLEQPAPTTKAQYSKRLLTYRTRLAQIASAKYDEGEFEPEVNVLVVRLTAQDLC*
JGI25405J52794_100710232	3300003911	Tabebuia Heterophylla Rhizosphere	VLTLXVCGISVAFGTASFFMLDQDKTVRVDVCQRLLASLEEPVPTTKAQFAQRLLRYRARFAQIASAKYDEGQFDLEVNV
Ga0066397_100154144	3300004281	Tropical Forest Soil	MLTLKVCGISIAFGTASFFMLDNGKTVRVDVCQRLLAGLEEPVPATKAQYAQRLLRYRARFAQIASAKYDEGQFDSEVNVLVVRITALDLKEPIAAAGAGVSGSG*
Ga0066395_107946412	3300004633	Tropical Forest Soil	GVVLALKVCRISVAFGTASFFMTDHDKTVRVDVCQRLLAGLEQPTPTTKAQFTERLLRYRPRFAQIASAKYDEGQFELEVNVLVVRVTARDLH*
Ga0066388_1003104465	3300005332	Tropical Forest Soil	VLTLKVCGVSVAFGTASFFMTDAEKTVRVDVCRRLLASLEEPAPTTRAQYAKRLLRYRSRFAQIASAKYDEGQFDLEVNVFVVQISALDLS*
Ga0066388_1006562603	3300005332	Tropical Forest Soil	MLTLKVCGISVAFGTASFFMHDDHKTVRVDVCQRLLAGLEEPAPTTKAQFANRLLRYRARFAQIASVKYDEGQFDPEVNVLVVRITAQDLN*
Ga0066388_1014680862	3300005332	Tropical Forest Soil	MCGTSIAFGTASFFMTDDTRTVRVDVCQRLLASLEEPVPSSRAQYASRLLRYRSRFAQIASAKYDEGRFDFEVNVRVVRITADDLG*
Ga0066388_1016603901	3300005332	Tropical Forest Soil	MCGISVAFGTASFFMTDNNRTVRVDVCQRLLASLEEPAPTSKAQYVTRLLRYRSRFAQIASAKYDEGRFDFEVNVLVVRITADDLG*
Ga0066388_1021107101	3300005332	Tropical Forest Soil	VLILKVCGISVAFGTASFFMLDQDKTVRVDVCQRLLASLDEPVPTTKAQFAKRLLRYRSRFAQIASAKYDEGQFDLEVNVFVVRISALDLDERPGGAA*
Ga0066388_1025357962	3300005332	Tropical Forest Soil	MCGTSVAFGTASFFMTDNDRTVRVDVCQRLLASLEEPAPTSKAQYANRLLRYRSRFAQIASLKYDEGRFDFEVNVLVVRITADDLS*
Ga0066388_1030584482	3300005332	Tropical Forest Soil	VLALKVCRISVAFGTASFFMTDHDKTVRVDVCQRLLAGLEAPAPTTKAQFAERLLRYRSRFAQIASAKYDEGQFEPEVNVLVVRVTAGDLS*
Ga0066388_1036228911	3300005332	Tropical Forest Soil	VLSLKVCGTSVAFGTASFFMTDKQRTVRVDVCQRLLASLEEPMPTSKAQFAKRLLRYRARFAQIASAKYDEGQFDAEVNVLVVRISAGDLS*
Ga0066388_1045698042	3300005332	Tropical Forest Soil	GTASFFMVDNERTVRVDVCQRLLASLEQPAPTTRAQYAKRLLRYRARFAQIASAKYDEGLFDFEVNVLVVRISALDLS*
Ga0066388_1062833582	3300005332	Tropical Forest Soil	MTDHDKTVRVDVCQRLLAGLEQPTPTTKAQFTERLLRYRPRFAQIAAAKYDEGQFELEVNVLVVRVTARDLH*
Ga0070691_100033115	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MTDDNTTVRVDVCQRLLASLEEPVPRSRAQYASRLLRYRSRFAQIASAKYDEGRFDFEVNVRVVRITADDLG*
Ga0070700_1001888674	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	VLTLKVCSVSVAFGTASFFMVDNERTVRVDVCQRLLASLEEPVPTTKAQYAKRLLRYRARFAQIASAKYDEGLFDFEVNVFVVRISALDLS*
Ga0070694_1002923781	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	TRQYAVLTLKVCSVSVAFGTASFFMVDNERTVRVDVCQRLLASLEEPVPTTKAQYAKRLLRYRARFAQIASAKYDEGLFDFEVNVFVVRISALDLS*
Ga0070663_1005887551	3300005455	Corn Rhizosphere	MCGTSVAFGTASFFMTDDNRTVRVDVCQRLLASLEEPAPTSKAQYANRLLRYRSRFAQIASLKYDEGRFDFEVNVLVVRITA
Ga0070663_1013677692	3300005455	Corn Rhizosphere	MDDDRTVRVDVCQRLLASLEEPAPTSKAQYAKRLLRYRSRLAQIASAKYDEGQFDLEVNVLVVRISALDLS*
Ga0070704_1009141731	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MCGTSIAFGTASFFMTDDNTTVRVDVCQRLLASLEEPVPRSRAQYASRLLRDRSRFAQIASAKYDEGRFDFEVNVRVVRITADDLG*
Ga0066905_1000306315	3300005713	Tropical Forest Soil	VVLVLKVCRISVAFGTASFFMTDHDKTVRVDVCQRLLAGLEQPTPTTKAQFTERLLRYRPRFAQIAAAKYDEGQFELEVNVLVVRVTARDLH*
Ga0066905_1000548853	3300005713	Tropical Forest Soil	GCDVSVAFGTASFFMMDNNKIVRVDVCQRLLAGLEEPAPTTRAQYTRRLLSYRARLAQIASAKYDEGEFELEVNVLVVRLTAQDLC*
Ga0066905_1000728703	3300005713	Tropical Forest Soil	VLILKVCGISVAFGTASFFMLDQDKTVRVDVCQRLLASLEEPVPTTKAQFAQRLLRYRARFAQIASAKYDEGQFDLEVNVFVVRINAHDLT*
Ga0066905_1000767273	3300005713	Tropical Forest Soil	MCGISVAFGTASFFMTDNDRTVRVDVCQRLLASLEEPALTSKAQYANRLLRYRSRFAQIASAKYDEGRFDFEVNVLVVRITADDLS*
Ga0066905_1000887011	3300005713	Tropical Forest Soil	VLTLKVCGISVAFGTASFFMLDQDKTVRVDVCQRLLASLEEPVPTTKAQYAKRLLRYRSRFAQIASAKYDEGQFDLEVNVFVVRITALDLH*
Ga0066905_1002083843	3300005713	Tropical Forest Soil	LPSHCVASGVCCGEGNPLCRRKRQSAVLNLKMCGISVAFGTASFFMTDNNRTVRVDVCQRLLASLEEPAPTSKAQYVTRLLRYRSRFAQIASAKYDEGRFDFEVNVLVVRITADDLG*
Ga0066905_1002677013	3300005713	Tropical Forest Soil	VLSLKVCGISVAFGTASFFMTDNQRTVRVDVCQRLLASLEEPVPTNKAQYAKRLLRYRARFAQIASAKYDEGQFDSEVNVLVVRISAGDLG*
Ga0066905_1008147202	3300005713	Tropical Forest Soil	MVHRKRRPPVLTLKGCDVSVAFGTASFFMMDSSKTVRVDVCQRLLASLEQPAPTTKAQYSKRLLTYRARLAQIASAKYDEGEFEPEVNVLVVRLTAQDLC*
Ga0066905_1021257551	3300005713	Tropical Forest Soil	VLTLSGPRVSVAFGTASFFMTDNGKTVRVDVCQQLLAGLEQPAPTSKAQYAKRLLRYRSRLAHIASTKYDQGQYGSDLNVLVVQITADDLT*
Ga0068861_1001858202	3300005719	Switchgrass Rhizosphere	MCGTSIAFGTASFFMTDDNTTVRVDVCQRLLASLEEPVPRSRAQYASRLLRYRSRFAQIASAKYDEGRFDFEVNVRVVRITADDLG*
Ga0068861_1003963904	3300005719	Switchgrass Rhizosphere	VLTLKVCSVSVAFGTASFFMVDNERTVRVDVCQRLLASLEEPVPTTKAQYAKRLLRYRARFAQIASAKYDEGLFDFEVNVF
Ga0066903_1001723323	3300005764	Tropical Forest Soil	VVLALKVCRISVAFGTASFFMTDHDKTVRVDVCQRLLAGLEQPTPTTKAQFTERLLRYRPRFAQIAAAKYDEGQFELEVNVLVVRVTARDLH*
Ga0066903_1002587215	3300005764	Tropical Forest Soil	VLTLKVCGISVAFGTASFFMLDQDKTVRVDVCQRLLASLDQPVPTTKAQFAKRLLRYRSRFAQIASAKYDEGQFDREVNVFVVRISALDLHERPSGSA*
Ga0066903_1045932381	3300005764	Tropical Forest Soil	VLTFKGCDVSVAFGTASFFMMDSNKIVRVDVCQRLLASLGEPAPTTKAQYSQRLLSYRTRLAQIASAKYDEGEFELEVNVRVVRLTAEDLC*
Ga0068860_1023503911	3300005843	Switchgrass Rhizosphere	AVLTLKVCSVSVAFGTASFFMVDNERTVRVDVCQRLLASLEEPVPTTKAQYAKRLLRYRARFAQIASAKYDEGLFDFEVNVFVVRISALDLS*
Ga0081455_1000016130	3300005937	Tabebuia Heterophylla Rhizosphere	VLTLKVCGISVAFGTASFFMLDQDKTVRVDVCQRLLASLEEPVPTTKAQFAQRLLRYRARFAQIASAKYDEGQFDLEVNVFVVRINAHDLT*
Ga0081540_100064210	3300005983	Tabebuia Heterophylla Rhizosphere	VLTLKVCSVSVAFGTASFFMTDNDKTVRVDVCQRLLASLEEPAPTSRAQYAKRLLRYRSRFAQIASAKYDEGQFDLEVNVFVVRISAVDLS*
Ga0081540_10030305	3300005983	Tabebuia Heterophylla Rhizosphere	MCGISVAFGTASFFMTDNNRTVRVDVCQRLLASLEEPAPTSKAQYANRLLRYRARFAQIASAKYDEGRFDFEVNVLVVRITADDLG*
Ga0081540_11678421	3300005983	Tabebuia Heterophylla Rhizosphere	MCGTSIAFGTASFFMTDANRTVRVDVCQRLLASLEEPVPRSRAQYASRLLRYRSRFAQIASAKYDEGRFDFEVNVRVVRITADDLG*
Ga0068871_1017005982	3300006358	Miscanthus Rhizosphere	MCGTSVAFGTASFFMTDDNRTVRVDVCQRLLASLEEPAPTSKAQYANRLLRYRSRFAQIASLKYDEGRFDFEVNVLVVRITADDLR*
Ga0079220_113706562	3300006806	Agricultural Soil	VLTLKVCGISVAFGTVSFFMADNDKTVRVDVCQRLLANLEEPAPASKAQYAKRLLRYRSRFAQIASAKYDEGQFDPEVNVLVVRISAGDLS*
Ga0075428_1002052804	3300006844	Populus Rhizosphere	VLTLKVCSVSVAFGTASFFMADNDRTVRVDVCQRLLASLDEPAPTTKAQYAKLLLRYRSRFAQIASAKYDEGQFDLEVNVFVVRISALDLS*
Ga0075421_1025290951	3300006845	Populus Rhizosphere	VSVAFGTASFFMADNDRTVRVDVCQRLLASLDEPAPTTKAQYAKLLLRYRSRFAQIASAKYDEGQFDLEVNVFVVRISALDLS*
Ga0075434_1000217841	3300006871	Populus Rhizosphere	VLTLKVCGVSVAFGTASFFMLDQDKTVRVDVCQRLLASLEEPVPTTRAQITKRLLRYRSRFAQIASAKYDEGQFDLEVNVFV
Ga0075434_1002743625	3300006871	Populus Rhizosphere	FGTASFFMLDQDKTVRVDVCQRLLASLEEPVPTTRAQFTKRLLRYRSRFAQIASAKYDEGQFDLEVNVFVVRITALDLG*
Ga0075424_1005335343	3300006904	Populus Rhizosphere	VLTHKVCSVSVAFGTASFFMMDNDRTVRVDVCQRLLASLEEPAPTTKAQYVKCLLRYRSRLAQIASAKYDEGQFDLEVNVFVVRISALDLS*
Ga0105098_106455581	3300009081	Freshwater Sediment	VLTPKLCGISVAFGTASFFMTDNDKTVRVDVCQRLLASLEEPMPMTKAQYVNRLQRYRARFAQIASAKYDEGLFDTEVNVLVVRISASDLN*
Ga0111539_100972334	3300009094	Populus Rhizosphere	MMDNDRTVRVDVCQRLLASLEEPAPTTKAQYVKCLLRYRSRLAQIASAKYDEGQFDLEVNVFVVRISALDLS*
Ga0111539_101753742	3300009094	Populus Rhizosphere	LVPCGVTREKRQATVLNLKMCGTSIAFGTASFFMTDDNRTVRVDVCQRLLASLEEPVPRSRAQYASRLLRYRSRFAQIASAKYDEGRFDFEVNVRVVRITADDLG*
Ga0111539_121133241	3300009094	Populus Rhizosphere	GQGAVLTLKVCGVSVAFGTASFFMLDQDKTVRVDVCQRLLASLEEPVPTTRAQFTKRLLRYRSRFAQIASAKYDEGQFDLEVNVFVVRITALDLG*
Ga0075418_102566042	3300009100	Populus Rhizosphere	MCGISVAFGTASFFMTDNDRTVRVDVCQRLLASLEEPAPTSKAQYASRLLRYRSRFAQIASVKYDEGRFDFEVNVLVVRITADDLS*
Ga0111538_100383681	3300009156	Populus Rhizosphere	MCGTSVAFGTASFFMTDDNRTVRVDVCQRLLASLEEPAPTSKAQYANRLLRYRSRFAQIASLKYDEGRFDFEVNVLVVRITADDLS*
Ga0111538_106675803	3300009156	Populus Rhizosphere	VLTLKVCSVSVAFGTASFFMVDNERTVRVDVCQRLLASLEEPAPTTRAQYAKRLLRYRARFAQIASAKYDEGLFDFEVNVFVVRISALDLS*
Ga0111538_125893282	3300009156	Populus Rhizosphere	MLDNDRTVRVDVCQRLLASLEEPAPTTKAQYAHRLLRYRSRLAQIASAKYDE
Ga0111538_127095421	3300009156	Populus Rhizosphere	MCGISVAFGTASFFMSDNNRTVRVDVCQRLLASLEEPAPTSKAEYASRLLRYRSRFAQIASAKYDEGRFDFEVNVLVVRITADDLS*
Ga0111538_133832481	3300009156	Populus Rhizosphere	RTVRVDVCQRLLASLEEPAPTSKAQYAKRLLRYRSRLAQIASAKYDEGQFDLEVNVFVVRISALDLS*
Ga0075423_103057733	3300009162	Populus Rhizosphere	LVPCGVTREKRQATVLNLKMCGTSIAFGTASFFMTDDNRTVRVDVCQRLLASLEEPVPRSRAQYASRLLRYRSRFAQIASAKYDEGRFDFEVNV
Ga0126380_100255902	3300010043	Tropical Forest Soil	VVLALKVCRISVAFGTASFFMTDHDKTVRVDVCQRLLAGLEQPTPTTKAQFTERLLRYRPRFAQIASAKYDEGQFELEVNVLVVRVTARDLH*
Ga0126380_100993272	3300010043	Tropical Forest Soil	MTDNQRTVRVDVCQRLLASLEEPAPTSKAQYAKRLLRYRGRFAQIASAKYLEGQVEFEVNVLVVRITARDLS*
Ga0126380_102078432	3300010043	Tropical Forest Soil	VLSLKVCGISVAFGTASFFMTDNQRTVRVDVCQRLLASLEEPVPTSKAQYAKRLLRYRARFAQIASAKYDEGQFDSEVNVLVVRISAGDLG*
Ga0126380_107182952	3300010043	Tropical Forest Soil	MTDNGKTVRVDVCQQLLAGLEQPAPTSKAQYAKRLLRYRSRLAHIASTKYDQGQFGSDLNVLVVQITADDLT*
Ga0126380_111363751	3300010043	Tropical Forest Soil	MLTLKVRGISIAFGTASFFMLDNGKTVRVDVCQRLLAGLEEPVPATKAQYAQRLLRYRARFAQIASAKYDEGQFDLEVNVFVVRITALDLD*
Ga0126384_102571772	3300010046	Tropical Forest Soil	MTDHHRTVRVDVCQRLLASLEEPAPTSKAQYARRLLRYRARFAQIASAKYNEGQVDFEVNVLVVRITARDLS*
Ga0126384_104310432	3300010046	Tropical Forest Soil	MTDNGKTVRVDVCQQLLAGLEQPAPTSKAQYAKRLLRYRSRLAHIASTKYDQGQYGSDLNVLVVQITADDLT*
Ga0126384_105334422	3300010046	Tropical Forest Soil	MLDQDRTVRVDVCQRLLASLDEPVPTTKAQFAKRLLRYRSRFAQIASAKYDEGQFDLEVNVFVVRITALDLD*
Ga0126382_100021735	3300010047	Tropical Forest Soil	VVLVLKVCRISVSFGTASFFMTDHDKTVRVDVCQRLLAGLEQPTPTTKAQFTERLLRYRPRFAQIAAAKYDEGQFELEVNVLVVRVTARDLH*
Ga0126382_100558531	3300010047	Tropical Forest Soil	MTDNGKTVRVDVCQQLLAGLEQPAPTSKAQYAKRLLRYRARLAHIAAAKYDEGQYGFDLNVLVVQITADDLA*
Ga0126382_100779491	3300010047	Tropical Forest Soil	MTDNGKTVRVDVCQQLLAGLEQPAPTSKAQYAKRLLRYRSRLAHIASTKYDQGQYGSDLNVLV
Ga0126382_102197052	3300010047	Tropical Forest Soil	VLTFKGCDVSVAFGTASFFMMDNNKIVRVDVCQRLLAGLEEPAPTTRAQYTRRLLSYRARLAQIASAKYDEGEFELEVNVLVVRLTAQDLC*
Ga0126382_103491642	3300010047	Tropical Forest Soil	MLDQDKTVRVDVCQRLLASLEEPVPTTKAQYAKRLLRYRSRFAQIASAKYDEGQFDLEVNVFVVRITALDLH*
Ga0126382_103889662	3300010047	Tropical Forest Soil	VLTHKVCSVSVALGTASFFMADNDRTVRVDVCQRLLASLEQPAPTTKAQYAKCLLRFRSRLAQIASAKYDEGQFDLEVNVFVVRISALDLG*
Ga0126382_123301921	3300010047	Tropical Forest Soil	MEGSSLSQRGSQRTRQCAVLNLKVCGVSVAFGTASFFMTDAEKTVRVDVCRRLLASLEEPVPTTRAQYAKRLLRYRSRFAQIASAKYDEGQFDLEVNVLVVQISALDLS*
Ga0126370_123536511	3300010358	Tropical Forest Soil	VLTFKGCDVSVAFGTASFFMMDSNKIVRVDVCQRLLASLGEPSPTTKAQYSERLLSYRTRLAQIASAKYDEGEFELEVNVRVVRLTAEDLC*
Ga0126372_100218242	3300010360	Tropical Forest Soil	MLTLKVCGISIAFGTASFFMLDNGKTVRVDVCQRLLAGLEEPVPATKAQYAQRLLRYRARFAQIASAKYDEGQFDSEVNVLVVRITALDLKEPIAAAGAGVAGSG*
Ga0126372_107572511	3300010360	Tropical Forest Soil	VLTFKGCDVSVAFGTASFFMMDSNKIVRVDVCQRLLASLGEPAPTTKAQYSERLLSYRTRLAQIASAKYDEGEFELE
Ga0126377_100281556	3300010362	Tropical Forest Soil	MTDNQRTVRVDVCQRLLASLEEPAPTSKAQYAKRLLRYRARFAQIASAKYLEGQVEFEVNVLVVRITARDLS*
Ga0126377_101015862	3300010362	Tropical Forest Soil	LVFCGVSREKRRATVLNLKMCGTSIAFGTASFFMTDDTRTVRVDVCQRLLASLEEPVPSSRAQYASRLLRYRSRFAQIASAKYDEGRFDFEVNVRVVRITADDLG*
Ga0126377_101287992	3300010362	Tropical Forest Soil	VLNVKMCGISVAFGTASFFMTDNDRTVRVDVCQRLLASLEEPALTSKAQYVHRLLRYRSRFAQIASAKYDEGRFDFEVNVRVVRITADDLS*
Ga0126377_103203422	3300010362	Tropical Forest Soil	VLTLKVCSVSVAFGTASFFMVDNERTVRVDVCQRLLASLEQPAPTTRAQYAKRLLRYRARFAQIASAKYDEGLFDFEVNVLVVRISALDLS*
Ga0126377_103443642	3300010362	Tropical Forest Soil	VLTHKVCSVSIAFGTASFFMADNDRTVRVDVCQRLLASLEEPAPTTKAQYAKRLLRYRSRLAQIASAKYDEGQFDLEVNVLVVRISALDLG*
Ga0126377_104243782	3300010362	Tropical Forest Soil	FFMTDNQRTVRVDVCQRLLASLEEPVPTSKAQYAKRLLRYRARFAQIAAAKYLEGQVEFEVNVFVVRITARDLS*
Ga0126377_107280082	3300010362	Tropical Forest Soil	LVPQAIGESDQLHPKKRQPPVLNVKMCGISVAFGTASFFMTDNNRTVRVDVCQRLLASLEEPAPTSKAQYVTRLLRYRSRFAQIASAKYDEGRFDFEVNVLVVRITADDLG*
Ga0126377_108493471	3300010362	Tropical Forest Soil	MTDNGKTVRVDFCQQLLAGLEQPAPTSKAQYAKRLLRYRSRLAHIASTKYDQGQFGSDLNVLVVQITADDLT*
Ga0126377_113544472	3300010362	Tropical Forest Soil	PKKRQPPVLNVKMCGISVAFGTASFFMTDNDRTVRVDVCQRLLASLEEPALTSKAQYANRLLRYRSRFAQIASAKYDEGRFDFEVNVLVVRITADDLS*
Ga0126377_130933561	3300010362	Tropical Forest Soil	VCGTSVAFGTASFFMTDNQTTVRVDVCQRLLASLEEPMPTSKAQFAKRLLRYRARFAQIASAKYDEGQFDAEVNVL
Ga0134122_1000031717	3300010400	Terrestrial Soil	VLTLKVCSVSVAFGTASFFMADNDRTVRVDVCQRLLASLDEPAPTTKAQYANRLLRYRSRFAQIASAKYDEGQFDLEVNVFVVRISALDLS*
Ga0134123_118991081	3300010403	Terrestrial Soil	LVSCGVTREKRQATVLNLKMCGTSIAFGTASFFMTDDNTTVRVDVCQRLLTSLEEPVPRSRAQYASRLLRYRSRFAQIASAKYDEGRFDFEVNVLVVRITADDL
Ga0126375_106253552	3300012948	Tropical Forest Soil	VLTLKVCSVSVAFGTASFFMVDNERTVRVDVCQRLLASLEEPAPTTRAQYAKRLLRYRARFAQIASAKYDEGLFDFEVNVLVVRISALDLS*
Ga0126375_112814221	3300012948	Tropical Forest Soil	VAFGTASFFMTDNGKTVRVDVCQQLLAGLEQPAPTSKAQYAKRLLRYRSRLAHIASTKYDQGQFGSDLNVLVVQITADDLT*
Ga0164300_110082211	3300012951	Soil	MLTLKVCGISVAFGTASFFMTDNEKTVRVDVCQRLLASLEEPAPTSKAQYARLLLRYRSRFAQIASAKYDDGQFDFEVNVLVVRITAGDLG*
Ga0164302_110693981	3300012961	Soil	MLTLKVCGISVAFGTASFFMTDNEKTVRVDVCQRLLASLEEPAPTSKAQYARLLLRYRSRFAQIASAKYDDGQFDF
Ga0126369_114683842	3300012971	Tropical Forest Soil	VLSLKVCGTSVAFGTASFFMTDNQTTVRVDVCQRLLASLEEPMPTSKAQFAKRLLRYRARFAQIASAKYDEGQFDAEVNVLVVRISAGDLS*
Ga0126369_121046251	3300012971	Tropical Forest Soil	MGGQGLVRVGERLLAGLEQPAPTSKAQYAKRLLRYRSRLAQIASAKYDEGRYGSDLNVLVVLITADDLT*
Ga0164304_116364301	3300012986	Soil	SLRNAKRQYPMLTLKVCGISVAFGTASFFMTDNEKTVRVDVCQRLLASLEEPAPTSKAQYARLLLRYRSRFAQIASAKYDDGQFDFEVNVLVVRITAGDLG*
Ga0157376_112802921	3300014969	Miscanthus Rhizosphere	PGQRGSQRTRQRAVLTLKVCSVSVAFGTASFFMMDDDRTVRVDVCQRLLASLEEPAPTSKAQYAKRLLRYRSRLAQIASAKYDEGQFDLEVNVLVVRISALDLS*
Ga0132258_100119069	3300015371	Arabidopsis Rhizosphere	MADNDRTVRVDVCQRLLASLEEPAPTTKAQYAKRLLRYRSRFAQIASAKYDEGQFDLEVNVLVVRISALDLS*
Ga0132258_110089721	3300015371	Arabidopsis Rhizosphere	MCGTSIAFGTASFFMTDDNRTVRVDVCQRLLASLEEPAPTSKAQYANRLLRYRSRFAQIASLKYDEGRFDFEVNVLVVRITADDLR*
Ga0132256_1005899343	3300015372	Arabidopsis Rhizosphere	MMDDDRTVRVDVCQRLLASLEEPAPTSKAQYAKRLLRYRSRLAQIASAKYDEGQFDLEVNVFVVRISALDLS*
Ga0132256_1013730432	3300015372	Arabidopsis Rhizosphere	FFMADNDRTVRVDVCQRLLASLEEPAPTTKAQYAKRLLRYRSRFAQIASAKYDEGQFDLEVNVLVVRISALDLS*
Ga0132255_1022194001	3300015374	Arabidopsis Rhizosphere	GDGRFVAPGQRGSQRTRQRAVLTLKVCSVSVAFGTASFFMADNDRTVRVDVCQRLLASLEEPAPTTKAQYAKRLLRYRSRFAQIASAKYDEGQFDLEVNVLVVRISALDLS*
Ga0207678_111827613	3300026067	Corn Rhizosphere	MDDDRTVRVDVCQRLLASLEEPAPTSKAQYAKRLLRYRSRLAQIASAKYDEGQFDLEVNVLVVRISALDLS
Ga0207708_101034995	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	VLTLKVCSVSVAFGTASFFMVDNERTVRVDVCQRLLASLEEPVPTTKAQYAKRLLRYRARFAQIASAKYDEGLFDFEVNVFVVRISALDLS
Ga0207648_104804812	3300026089	Miscanthus Rhizosphere	MTDDNTTVRVDVCQRLLASLEEPVPRSRAQYASRLLRYRSRFAQIASAKYDEGRFDFEVNVRVVRITADDLG
Ga0207428_100224976	3300027907	Populus Rhizosphere	VLTLKVCGVSVAFGTASFFMLDQDKTVRVDVCQRLLASLEEPVPTTRAQFTKRLLRYRSRFAQIASAKYDEGQFDLEVNVFVVRITALDLG
Ga0207428_106064681	3300027907	Populus Rhizosphere	MCGTSIAFGTASFFMTDDNRTVRVDVCQRLLASLEEPVPRSRAQYASRLLRYRSRFAQIASAKYDEGRFDFEVNVRVVRITADDLG
Ga0207428_107404851	3300027907	Populus Rhizosphere	VLTHKVCSVSVAFGTASFFMMDNDRTVRVDVCQRLLASLEEPAPTTKAQYVKCLLRYRSRLAQIASAKYDEGQFDLEVNVFVVRISALDLS
Ga0209382_113427251	3300027909	Populus Rhizosphere	VLTLKVCSVSVAFGTASFFMADNDRTVRVDVCQRLLASLDEPAPTTKAQYAKLLLRYRSRFAQIASAKYDEGQFDLEVNVFVVRISALDLS
Ga0268264_125271291	3300028381	Switchgrass Rhizosphere	VAFGTASFFMVDNERTVRVDVCQRLLASLEEPVPTTKAQYAKRLLRYRARFAQIASAKYDEGLFDFEVNVFVVRISALDLS
Ga0307505_104859351	3300031455	Soil	QCAVLTLKVCSVSVAFGTASFFMADNDRTVRVDVCQRLLASLDEPAPTTRAQYANRLLRYRSRFAQIASAKYDEGQFDLEVNVFVVRISALDLS
Ga0307469_101486281	3300031720	Hardwood Forest Soil	VLTLKVCSVSVAFGTASFFMADNDRTVRVDVCQRLLASLDEPAPTTKAQYAQRLLRYRSRFAQIASAKYDEGQFDLEVNVFVVRISALDLS
Ga0307468_1000243402	3300031740	Hardwood Forest Soil	MCGTSIAFGTASFFMTDDNTTVRVDVCQRLLASLEEPVPRSRAQYASRLLRYRSRFAQIASAKYDEGRFDFEVNVRVVRITADDLG
Ga0307468_1001253242	3300031740	Hardwood Forest Soil	VLNVKMCGISVAFGTASFFMTDNNRTVRVDVCQRLLASLEEPAPTSKAQYASRLLRYRSRFAQIASAKYDEGRFDFEVNVLVVRITADDLS
Ga0307468_1010258312	3300031740	Hardwood Forest Soil	VLTLKVCSVSVAFGTASFFMADNDRTVRVDVCQRLLASLDEPAPTTKAQYANRLLRYRSRFAQIASAKYDEGQFDLEVNVFVVRISALDLS
Ga0307473_112295711	3300031820	Hardwood Forest Soil	VLTLKVCSVSVAFGTASFFMADNDRTVRVDVCQRLLANLDEPAPTTKAQYAKRLLRYRSRFAQIASAKYDEGQFDLEVNVFVVRISALDLS
Ga0310892_109924251	3300031858	Soil	GTASFFMTDDNRTVRVDVCQRLLASLEEPAPTSKAQYANRLLRYRSRFAQIASLKYDEGRFDFEVNVLVVRITADDLR
Ga0310900_106565292	3300031908	Soil	RQPPVLNVKMCGTSVAFGTASFFMTDDNRTVRVDVCQRLLASLEEPAPTSKAQYANRLLRYRSRFAQIASLKYDEGRFDFEVNVLVVRITADDLR
Ga0310900_107426933	3300031908	Soil	MCGISVAFGTASFFMTDKDRTVRVDVCQRLLASLEEPAPTSKAQYASRLLRYRSRFAQIASVKYDEGRFDFEVNVLVVRITADDLS
Ga0310885_102084752	3300031943	Soil	VLNVKMCGISVAFGTASFFMTDKDRTVRVDVCQRLLASLEEPAPTSKAQYASRLLRYRSRFAQIASVKYDEGRFDFEVNVLVVRITADDLS
Ga0310885_106198361	3300031943	Soil	VLNVKMCGTSVAFGTASFFMTDDNRTVRVDVCQRLLASLEEPAPTSKAQYANRLLRYRSRFAQIASLKYDEGRFDFEVNVLVVRITADDLR
Ga0310884_109147152	3300031944	Soil	VLTLKVCSVSVAFGTASFFMADNDRTVRVDVCQRLLASLEEPAPTTKAQYAKRLLRYRSRFAQIASAKYDEGQFDLEVNVLVVRISALDL
Ga0310897_104924152	3300032003	Soil	KRQPPVLNVKMCGTSVAFGTASFFMTDDNRTVRVDVCQRLLASLEEPAPTSKAQYANRLLRYRSRFAQIASLKYDEGRFDFEVNVLVVRITADDLR
Ga0310899_104192401	3300032017	Soil	VAFGTASFFMTDDNRTVRVDVCQRLLASLEEPAPTSKAQYANRLLRYRSRFAQIASLKYDEGRFDFEVNVLVVRITADDLR
Ga0310890_107455662	3300032075	Soil	CRSAPRHSQVLRPEAACQGDGRFVAPGQRGSQRTRQRAVLTLKVCSVSVAFGTASFFMMDDDRTVRVDVCQRLLASLEEPAPTSKAQYAKRLLRYRSRLAQIASAKYDEGQFDLEVNVLVVRISALDLS
Ga0310890_116927391	3300032075	Soil	MTDKDRTVRVDVCQRLLASLEEPAPTSKAQYASRLLRYRSRFAQIASVKYDEGRFDFEVNVLVVRIT
Ga0310890_117088301	3300032075	Soil	VLTLKVCSVSVAFGTASFFMADNDRTVRVDVCQRLLASLEEPAPTTKAQYAKRLLRYRSRFAQIASAKYDEGQFDLEVNVLVVRISALDLS
Ga0310895_101893032	3300032122	Soil	MCGTSVAFGTASFFMTDDNRTVRVDVCQRLLASLEEPAPTSKAQYANRLLRYRSRFAQIASLKYDEGRFDFEVNVLVVRITADDLR
Ga0307470_101650163	3300032174	Hardwood Forest Soil	VLTLKVCSVSVAFGTASFFMADNDRTVRVDVCQRLLASLDEPAPTTKAQYATRLLRYRSRFAQIASAKYDEGQFDLEVNVFVVRISALDLS
Ga0307470_102463531	3300032174	Hardwood Forest Soil	MLNVKMCGTSVAFGTASFFMTDNDRTVRVDVCQRLLASLEEPAPTSKAQYASRLLRYRSRFAQIASVKYDEGRFDFEVNVLVVRITADDLS
Ga0307471_1005121461	3300032180	Hardwood Forest Soil	MLNVKMCGTSVAFGTASFFMTDNDRTVRVDVCQRLLASLEEPAPTSKAQYASRLLRYRSRFAQIASVKYDEGRFDFEVNVRVVRITADDLS
Ga0307471_1006647882	3300032180	Hardwood Forest Soil	VLNVKMCGISIAFGTASFFMTDNNRTVRVDVCQRLLASLEEPAPTSKAQYASRLLRYRSRFAQIASAKYDEGRFDFEVNVLVVRITADDLS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F060001

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences