Metagenome / Metatranscriptome Family F059911

Basic Information
Family ID	F059911
Family Type	Metagenome / Metatranscriptome
Number of Sequences	133
Average Sequence Length	48 residues
Representative Sequence	VSEGRIRARLAELGLTLHGPHPPHDPLDAVVVHDGVARTSGQLPRIA
Number of Associated Samples	115
Number of Associated Scaffolds	133

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	39.85 %
% of genes near scaffold ends (potentially truncated)	99.25 %
% of genes from short scaffolds (< 2000 bps)	94.74 %
Associated GOLD sequencing projects	112
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.39

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (63.910 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (21.053 % of family members)
Environment Ontology (ENVO)	Unclassified (21.805 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (48.120 % of family members)

Multiple Sequence Alignments

Select alignment to view:

Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84. 1JGI12270J11330_102098791 2JGI12269J14319_102088311 3Ga0062389_1049675291 4Ga0070732_101253141 5Ga0070761_103512951 6Ga0070761_106103861 7Ga0070761_107047722 8Ga0070761_107357662 9Ga0075024_1005770062 10Ga0075029_1001355021 11Ga0075017_1000787703 12Ga0075017_1011942232 13Ga0075017_1016674802 14Ga0075019_104254711 15Ga0075015_1000175974 16Ga0075030_1003377541 17Ga0075522_104574161 18Ga0079217_111497482 19Ga0116214_10421461 20Ga0116222_15503501 21Ga0116218_15640931 22Ga0116220_104576392 23Ga0116220_105960812 24Ga0116135_11573721 25Ga0116215_12840682 26Ga0116224_104713571 27Ga0116217_105434142 28Ga0181523_107591581 29Ga0181528_106373391 30Ga0181531_107069142 31Ga0163163_120641512 32Ga0182016_101882861 33Ga0182012_102836751 34Ga0182024_104459311 35Ga0181525_108617871 36Ga0182030_102638861 37Ga0182032_107570722 38Ga0182034_102449421 39Ga0182037_114423992 40Ga0182039_121926901 41Ga0187779_112565081 42Ga0187783_113167991 43Ga0187782_116082042 44Ga0187863_107315773 45Ga0187890_101208903 46Ga0187890_101882411 47Ga0187858_103233622 48Ga0187784_100807344 49Ga0194063_103399191 50Ga0210387_118178651 51Ga0210394_103170283 52Ga0210384_103567973 53Ga0210384_107820233 54Ga0210391_111314861 55Ga0210390_100032081 56Ga0210409_113332531 57Ga0207933_11260841 58Ga0209009_11213211 59Ga0209333_11048971 60Ga0209333_11672672 61Ga0209274_103197961 62Ga0209698_108761421 63Ga0209698_112387772 64Ga0302279_101548781 65Ga0302189_103415682 66Ga0302199_11785651 67Ga0307289_104958612 68Ga0302235_102998561 69Ga0302235_103439781 70Ga0302229_103702261 71Ga0311368_107686802 72Ga0311327_100651161 73Ga0311329_101552323 74Ga0311359_102519563 75Ga0302142_12333062 76Ga0311340_111111022 77Ga0311371_121307632 78Ga0311331_113610151 79Ga0311342_101842251 80Ga0311342_105708692 81Ga0311342_113212932 82Ga0311338_117745421 83Ga0311344_101890403 84Ga0302184_102155622 85Ga0302183_104058702 86Ga0311355_117173472 87Ga0210259_117851082 88Ga0311345_103541461 89Ga0311345_105693001 90Ga0311345_108584072 91Ga0302311_106345241 92Ga0302314_106501081 93Ga0302314_109066392 94Ga0265760_102036801 95Ga0255310_101772952 96Ga0302325_121692061 97Ga0302324_1016599691 98Ga0265339_106096242 99Ga0302140_105020642 100Ga0302326_122241402 101Ga0318516_103039512 102Ga0318534_104856852 103Ga0318541_105750551 104Ga0310915_104639962 105Ga0307374_103389951 106Ga0307372_102323331 107Ga0307373_103209943 108Ga0318572_103054572 109Ga0310686_1174927351 110Ga0306917_105327832 111Ga0318493_101246793 112Ga0318493_102975971 113Ga0318492_106891382 114Ga0307475_101305914 115Ga0318535_101362791 116Ga0318546_101531484 117Ga0318543_104077542 118Ga0318547_107615501 119Ga0318565_104502772 120Ga0307478_115016331 121Ga0318499_101414642 122Ga0318495_100638823 123Ga0310912_111834591 124Ga0306926_109719331 125Ga0307479_120356731 126Ga0318570_104595432 127Ga0318525_102660321 128Ga0318525_102759431 129Ga0318518_102483121 130Ga0335078_120335831 131Ga0334854_035111_2_148 132Ga0334827_226627_412_549 133Ga0370483_0083489_3_119
Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84. 1JGI12270J11330_102098791 2JGI12269J14319_102088311 3Ga0062389_1049675291 4Ga0070732_101253141 5Ga0070761_106103861 6Ga0070761_107047722 7Ga0070761_107357662 8Ga0075024_1005770062 9Ga0075029_1001355021 10Ga0075017_1000787703 11Ga0075017_1011942232 12Ga0075030_1003377541 13Ga0075522_104574161 14Ga0079217_111497482 15Ga0116222_15503501 16Ga0181523_107591581 17Ga0181528_106373391 18Ga0163163_120641512 19Ga0182016_101882861 20Ga0182012_102836751 21Ga0182037_114423992 22Ga0194063_103399191 23Ga0302279_101548781 24Ga0302199_11785651 25Ga0307289_104958612 26Ga0302235_103439781 27Ga0311340_111111022 28Ga0311331_113610151 29Ga0311342_105708692 30Ga0210259_117851082 31Ga0255310_101772952 32Ga0307373_103209943 33Ga0306917_105327832 34Ga0318492_106891382 35Ga0335078_120335831 36Ga0334854_035111_2_148
Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46. 1Ga0209009_11213211 2JGI12270J11330_102098791 3JGI12269J14319_102088311 4Ga0062389_1049675291 5Ga0070761_107047722 6Ga0075024_1005770062 7Ga0075017_1011942232 8Ga0075019_104254711 9Ga0075030_1003377541 10Ga0075522_104574161 11Ga0079217_111497482 12Ga0116217_105434142 13Ga0182012_102836751 14Ga0181525_108617871 15Ga0182030_102638861 16Ga0187783_113167991 17Ga0187782_116082042 18Ga0187890_101882411 19Ga0187784_100807344 20Ga0194063_103399191 21Ga0210390_100032081 22Ga0210409_113332531 23Ga0209698_108761421 24Ga0209698_112387772 25Ga0302199_11785651 26Ga0307289_104958612 27Ga0302235_103439781 28Ga0311329_101552323 29Ga0302142_12333062 30Ga0311331_113610151 31Ga0311342_105708692 32Ga0311338_117745421 33Ga0311344_101890403 34Ga0302184_102155622 35Ga0311355_117173472 36Ga0210259_117851082 37Ga0302311_106345241 38Ga0302314_106501081 39Ga0302314_109066392 40Ga0265760_102036801 41Ga0255310_101772952 42Ga0302325_121692061 43Ga0307372_102323331 44Ga0307373_103209943 45Ga0306917_105327832 46Ga0318493_102975971 47Ga0318492_106891382 48Ga0318547_107615501 49Ga0318525_102759431 50Ga0335078_120335831
Powered by MSAViewer

Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 18.67% β-sheet: 10.67% Coil/Unstructured: 70.67%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
Powered by Feature Viewer

Structure Viewer
WebGL does not seem to be available. This can be caused by an outdated browser, graphics card driver issue, or bad weather. Sometimes, just restarting the browser helps. Also, make sure hardware acceleration is enabled in your browser. For a list of supported browsers, refer to http://caniuse.com/#feat=webgl. Load File(s)

Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.39
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.39
Powered by PDBe Molstar

Pfam ID	Name	% Frequency in 133 Family Scaffolds
PF00596	Aldolase_II	46.62
PF00106	adh_short	14.29
PF02467	Whib	12.03
PF04115	Ureidogly_lyase	6.77
PF00501	AMP-binding	1.50
PF00296	Bac_luciferase	1.50
PF12007	DUF3501	1.50
PF00171	Aldedh	1.50
PF13618	Gluconate_2-dh3	1.50
PF02515	CoA_transf_3	0.75

COG ID	Name	Functional Category	% Frequency in 133 Family Scaffolds
COG3194	Ureidoglycolate hydrolase (allantoin degradation)	Nucleotide transport and metabolism [F]	6.77
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	1.50
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	1.50
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	1.50
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	1.50
COG0381	UDP-N-acetylglucosamine 2-epimerase	Cell wall/membrane/envelope biogenesis [M]	0.75
COG0707	UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase	Cell wall/membrane/envelope biogenesis [M]	0.75
COG1804	Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases	Lipid transport and metabolism [I]	0.75
COG2120	N-acetylglucosaminyl deacetylase, LmbE family	Carbohydrate transport and metabolism [G]	0.75

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	36.09 %
Unclassified	root	N/A	63.91 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	36.09 %
Unclassified	root	N/A	63.91 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	36.09 %
Unclassified	root	N/A	63.91 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	27.82 %
Unclassified	root	N/A	63.91 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	27.82 %
Unclassified	root	N/A	63.91 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	14.29 %
Unclassified	root	N/A	63.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.91 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	10.53 %

Name	Rank	Taxonomy	Distribution
Actinobacteria bacterium IMCC26207	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinobacteria bacterium IMCC26207	0.75 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	9.77 %
Unclassified	root	N/A	63.91 %

Scaffold	Taxonomy	Length	IMG/M Link
(restricted) 3300031197\|Ga0255310_10177295	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	592	Open in IMG/M
3300000567\|JGI12270J11330_10209879	All Organisms → cellular organisms → Bacteria	657	Open in IMG/M
3300001356\|JGI12269J14319_10208831	All Organisms → cellular organisms → Bacteria	760	Open in IMG/M
3300004092\|Ga0062389_104967529	Not Available	501	Open in IMG/M
3300005542\|Ga0070732_10125314	All Organisms → cellular organisms → Bacteria	1523	Open in IMG/M
3300005591\|Ga0070761_10351295	All Organisms → cellular organisms → Bacteria	894	Open in IMG/M
3300005591\|Ga0070761_10610386	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	679	Open in IMG/M
3300005591\|Ga0070761_10704772	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	632	Open in IMG/M
3300005591\|Ga0070761_10735766	Not Available	619	Open in IMG/M
3300006047\|Ga0075024_100577006	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	601	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.50%
Host-Associated	Host-Associated	1.50%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	15.79%
Plants	Host-Associated → Plants	1.50%
Terrestrial	Environmental → Terrestrial	82.71%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	8.27%
Peat	Environmental → Terrestrial → Peat	25.56%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.75%
Roots	Host-Associated → Plants → Roots	0.75%
Sediment	Environmental → Aquatic → Sediment	7.52%
Soil	Environmental → Terrestrial → Soil	57.14%

Habitat	Taxonomy	Distribution
Clay	Environmental → Terrestrial → Soil → Clay	2.26%
Lake	Environmental → Aquatic → Freshwater → Lake	0.75%
Loam	Environmental → Terrestrial → Soil → Loam	6.02%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.75%
Sand	Environmental → Terrestrial → Soil → Sand	0.75%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.75%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	40.60%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	25.56%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	7.52%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	7.52%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.52%

Habitat	Taxonomy	Distribution
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.75%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	6.77%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	27.82%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.02%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	3.01%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.50%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.75%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	25.56%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	10.53%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	7.52%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.51%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	2.26%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	0.75%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.75%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.75%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.75%
Anoxic Zone Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater	0.75%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	1.50%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	12.03%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	3.01%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	2.26%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.75%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.26%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.26%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	12.03%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	3.01%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.75%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	7.52%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.75%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.75%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	0.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	21.05%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.51%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.26%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	2.26%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	1.50%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.75%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.75%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.75%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.01%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.75%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	7.52%

Visualization
Download SVG Download PNG Download CSV
Powered by ApexCharts

Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M

Showing 1 to 10 of 115 entries

Previous1 2 3 4 5…12Next

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12270J11330_102098791	3300000567	Peatlands Soil	VSGRVADRLASLGLTLYGPHPPHDPLDAVVVHGDVARTSGQLPRIAGELTC
JGI12269J14319_102088311	3300001356	Peatlands Soil	MRLMQGRIAARIEALGLTLHGPHPPHDPLDAVVVHDNVARTSGQLPRIEGKLTCIGTLGR
Ga0062389_1049675291	3300004092	Bog Forest Soil	MPDEPTSGGKIAARLAELGLTLHGPHPPHDPLDAVVVFNGAARTSASCRASTGS*
Ga0070732_101253141	3300005542	Surface Soil	VPSYDARVAELGLTLYGPHPPHDPLDAVVVHAGTARTSGQLPRIDG
Ga0070761_103512951	3300005591	Soil	MSEGRIRARLAELGLTLHGPHPPHDPLDAVIVHAGVARTSGQLPRIDGELTC
Ga0070761_106103861	3300005591	Soil	VASFDARVRELGLTLYGPHPPHDPLDAVVVHGGVAR
Ga0070761_107047722	3300005591	Soil	MGTEGKISARLAELGLTLHGPHPPHDPLDAVVVWDGIARTSGQLPRIAGELTCLGR
Ga0070761_107357662	3300005591	Soil	MPGRISARLDALGLTLHGPHPPHDPLDAVVVHDNVART
Ga0075024_1005770062	3300006047	Watersheds	MGVAARLEELGIVLPGPFLPHDPLDAVVVHGGRARTSG
Ga0075029_1001355021	3300006052	Watersheds	MSFDARVAELGLTLYGPHPPHDPLDAVVIHGGVARTSGQLPRIDGQLTCLGIVGHD
Ga0075017_1000787703	3300006059	Watersheds	MAPGRVRERLAELGLQLHGPHPPHDPLDAVVVHGGVA
Ga0075017_1011942232	3300006059	Watersheds	MGPTPDGPVTAVPSGRVRSRMAELGLRLHGPHPPHDPLDAVVVHAGQARTSGQLPRI
Ga0075017_1016674802	3300006059	Watersheds	MTEGTIRARLAELGLTLHGPHPPHDPLDAVVVHGGVARTSGQLPRIAGELT
Ga0075019_104254711	3300006086	Watersheds	MSDGVIRARLAELGLTLHGPHPPHEPLDAVVVHGGVAR
Ga0075015_1000175974	3300006102	Watersheds	MAPGRVRERLAELGLQLHGPHPPHDPLDAVVVHGGVARTSG
Ga0075030_1003377541	3300006162	Watersheds	VSDGTIRARLETLGLTLHGPHPPHDPLDAVVVHGGVARTSGQLPRIAG
Ga0075522_104574161	3300006638	Arctic Peat Soil	LEGLTPTGRVRNRLAELGLELYGPHPPHDPLDAVVVHGGIART
Ga0079217_111497482	3300006876	Agricultural Soil	MAMDRTDERLRELGLTLHGPHPPHDPLDAVVVHNGIAR
Ga0116214_10421461	3300009520	Peatlands Soil	VGGRIADRLASQGLTLYGPHPPHDPLDAVVVHGDVARTSGQLPRIDGVLTCVGTL
Ga0116222_15503501	3300009521	Peatlands Soil	VSERTSGKGRIRARIEELGLTLHGPHPPHDPLDAVVIHGGVARTSGQLPRIAGELTCVGTLGVDVDVAQGAQAAE
Ga0116218_15640931	3300009522	Peatlands Soil	VTDGTIRARLATLGLTLHGPHPPHDPLDAVVVHDGVARTSGQLPRIAGELTCLGR
Ga0116220_104576392	3300009525	Peatlands Soil	MQGRIAARLEALGFTLHGPHPPHDPLDAVVVHDNVARTSGQLPRIKGQLTCTGTLGHDVSVD
Ga0116220_105960812	3300009525	Peatlands Soil	VSDGTIRARLAELGLTLHGPHPPHDPLDAVVVHAGVARTSGQLPRIAGELTCL
Ga0116135_11573721	3300009665	Peatland	MSEGRIRARLAQLGLTLHGPHPPHDPLDAVIVHAGVARTSGQLPRIDGELT
Ga0116215_12840682	3300009672	Peatlands Soil	MPGRIAARLDELGLTLHGPHPPHDPLDAVVVHDNVARTSGQLPRIEGKLTCTGTLGA
Ga0116224_104713571	3300009683	Peatlands Soil	VSGRIEQRLATLGLTLHGPHPPHDPLDAVVVHGDVARTSGQLPRIDGKLTC
Ga0116217_105434142	3300009700	Peatlands Soil	VTPDRTRARLCELGLTLHGPHPPHDPLDAVVVHDGVARTSGQLPRIDG
Ga0181523_107591581	3300014165	Bog	VTASDEGRVRARVEALGLTLHGPHPPHDPLDAVVVH
Ga0181528_106373391	3300014167	Bog	MSEGKISARLAELGLTLHGPHPPHDPLDAVVVHAGVARTSGQ
Ga0181531_107069142	3300014169	Bog	MPDGSTSGGKIAARLAELGLTLHGPHPPHDPLDAVVVFNGTARTSGQLPRI
Ga0163163_120641512	3300014325	Switchgrass Rhizosphere	MTTSPHTRLTELGLTLPGPYPPHDPLDAVVVHGGVA
Ga0182016_101882861	3300014493	Bog	MADAPEGRVRARLAELGLRLHGPHPPHQPLDAVVVHGGVARTSGQLPRIDGQLTCLGTL
Ga0182012_102836751	3300014499	Bog	VTPVDHELPQDAGVVRARLAQLGLTLYGPHPPHHPLDAVVVHGGVARTSGQLPRID
Ga0182024_104459311	3300014501	Permafrost	VALSEGKISARLAELGLTLHGPHPPHDPLDAVVVHGGVARTSGQLPRIAGELTCLGRL
Ga0181525_108617871	3300014654	Bog	VTGRIAQRLATLGLTLYGPHPPHDPLDAVVVHGDVARTSGQLPRIDGALTCVGTL
Ga0182030_102638861	3300014838	Bog	MPGRITARLEELGLTLHGPHPPHDPLDAVVVHGDVARTSGQLPRIEGQLTCT
Ga0182032_107570722	3300016357	Soil	VSEGRVRTRLDELGLTLHGPHPPHDPLDAVVVHEGVARTSGQLPR
Ga0182034_102449421	3300016371	Soil	MSDGVVRARLAELGLTLHGPHPPHDPLDAVVVYDGVARTSGQLPRIEGELTC
Ga0182037_114423992	3300016404	Soil	VSDGAIRARLAQLGLTLYGPHPPHDPLDAVVVHDGV
Ga0182039_121926901	3300016422	Soil	VPSYDARVAELGLTLYGPHPPHDPLDAVVVHGGVART
Ga0187779_112565081	3300017959	Tropical Peatland	MPGRVAARLDELGLTLHGPHPPHDPLDAVVVHDNVARTSGQLPRI
Ga0187783_113167991	3300017970	Tropical Peatland	MADGTIRARLGELGLTLHGPHPPHDPLDAVVVHDGVARTSGQLPRIDGVLTCLG
Ga0187782_116082042	3300017975	Tropical Peatland	VPGRIATRLEELGLTLYGPHPPHDPLDAVVVHDGVARTSG
Ga0187863_107315773	3300018034	Peatland	MQGHIAARLDALGLTLHGPHPPHDPLDAVVVHDNVARTSGQLPRIKGQLTCT
Ga0187890_101208903	3300018044	Peatland	VSEGIIGARLAELGLTLHGPHPPHDPLDAVVVHGGVARTSGQLPRIAGELTCLGR
Ga0187890_101882411	3300018044	Peatland	MRAMPDRIAARLDTLGLTLHGPHPPHDPLDSVVVHGNVARTSGQLPRIEGKLTCVGTLG
Ga0187858_103233622	3300018057	Peatland	MPDGPASGGKIAARLAELGLTLHGPHPPHDPLDAVVVSNGTARTSGQLP
Ga0187784_100807344	3300018062	Tropical Peatland	VPDAHDGGRVRARLAELGLTLHGPHPPHDPLEAVVVHQGVARTSGQLPRIAGEL
Ga0194063_103399191	3300021075	Anoxic Zone Freshwater	MSQVIRQRIADLGLVLHGPHPPHDPLVAVVIFERTARTSGQLPRIDGQLTCIG
Ga0210387_118178651	3300021405	Soil	VADGIVRARLAELGLTLHGPHPPHDPLDAVVVHDGVAR
Ga0210394_103170283	3300021420	Soil	VADGIVRARLAELGLTLHGPHPPHDPLDAVVVHDGVARTSGQLPRIA
Ga0210384_103567973	3300021432	Soil	VADGIVRARLAELGLTLHGPHPPHDPLDAVVVHDGVARTSGQLPRIAGELT
Ga0210384_107820233	3300021432	Soil	MSFDARVVELGLVLYGPHPPHDPLDAVVVHDGIART
Ga0210391_111314861	3300021433	Soil	MAVKEGKISARLAELGLTLHGPHPPHDPLDAVVVHAGVARTSGQLPRIAGELTC
Ga0210390_100032081	3300021474	Soil	VSDGNVRARLTELGLTLHGPHPPHDPLDAVVVHDGVARTSGQLPRIEG
Ga0210409_113332531	3300021559	Soil	VSFDLRVAELGLVLYGPHPPHDPLDAVVVHAGVARTSGQLPRIDGQLTC
Ga0207933_11260841	3300025679	Arctic Peat Soil	MQGRIAARLDALGLTLHGPHPPHDPLDSVVVHDNVARTSGQLPRIEGKLTCIGTLGHD
Ga0209009_11213211	3300027667	Forest Soil	VSEGRIRARLAELGLTLHGPHPPHDPLDAVVVHDGVARTSGQLPRIA
Ga0209333_11048971	3300027676	Forest Soil	VVHEGKVSARLAELGLTLHGPHPPHDPLDAVVVHAGVA
Ga0209333_11672672	3300027676	Forest Soil	VTDRIASRLAALGLTLHGPHPPHDPLDAVVVHGDVARTSGQLPRIDGELTCVGTLGL
Ga0209274_103197961	3300027853	Soil	MPGRISARLDALGLTLHGPHPPHDPLDAVVVHDNVARTSGQ
Ga0209698_108761421	3300027911	Watersheds	VPSFDARVAELGLTLYGPHPPHDPLDAVVVHDGIARTS
Ga0209698_112387772	3300027911	Watersheds	VLSYDARVAELGLTLYGPHPPHDPLDAVVVHGGVARTSGQLPRIDGK
Ga0302279_101548781	3300028783	Bog	MAEGKIAARLAELGLTLHGPHPPHDPLDAVVIHNG
Ga0302189_103415682	3300028788	Bog	MAVSEGKISARLAELGLTLHGPHPPHDPLDAVVVHGGVART
Ga0302199_11785651	3300028860	Bog	VTAPDGELGRVRTRLGELGLRLHGPHPPHHPLESVVIHDGVARTSGQLPRIDGELTCIGT
Ga0307289_104958612	3300028875	Soil	VSRIAARLDELGITLPGPHPPHHPLAAVIVHDGIARTSGQLPRVAGELTC
Ga0302235_102998561	3300028877	Palsa	MPGRISARLDALGLTLHGPHPPHDPLDAVVVHDNVARTSGQLPRIEGKLTCTGTLGDDVGVDVG
Ga0302235_103439781	3300028877	Palsa	VPSFDVRVAELGLTLYGPHPPHEPLAAVVIHGGVARTSGQLPRIDGRITC
Ga0302229_103702261	3300028879	Palsa	MSEGKVSARLAELGLTLHGPHPPHDPLDAVVIHDGTARTSGQLP
Ga0311368_107686802	3300029882	Palsa	VTVADGKIAARLAELGLTLHGPHPPHDPLDAVVIHDGTARTSG
Ga0311327_100651161	3300029883	Bog	MAVSEGKISARLAELGLTLHGPHPPHDPLDAVVVHGGVA
Ga0311329_101552323	3300029907	Bog	MSEGKVSARLAELGLTLHGPHPPHDPLDAVVVHGGVARTSGQLPRIAGELTC
Ga0311359_102519563	3300029914	Bog	MAVSEGKISARLAELGLTLHGPHPPHDPLDAVVVHGGVARTSGQLPRIAGE
Ga0302142_12333062	3300029920	Bog	MADAPEGRVRARLAELGLRLHGPHPPHQPLDAVVVHGGVARTSGQLPRIDGQL
Ga0311340_111111022	3300029943	Palsa	MADGPTSEGKIAARLADLGLTLHGPHPPHDPLDAVVIFNGTARTSGQLP
Ga0311371_121307632	3300029951	Palsa	MSDGDVPGGKVAARLAELGLTLHGPHPPHDPLDAVVVHNGTARTSGQLP
Ga0311331_113610151	3300029954	Bog	MAGLPTSGGRIAARLAELGLTLHGPHPPHDPLDAVVISNGTARTSGQLPRIDG
Ga0311342_101842251	3300029955	Bog	MADAPEGRVRARLAELGLRLHGPHPPHQPLDAVVVHGGVARTSGQLPRIDGQLTCLGTLG
Ga0311342_105708692	3300029955	Bog	VTGTADLRDTTEPAPGGRVRARLDELGLRLHGPHPPHDPLDSVVVHNGVARTSGQLPRIDGELT
Ga0311342_113212932	3300029955	Bog	MPGPPTSGGRITARLAELGLTLHGPHPPHEPLDAVVISNGTARTSGQLPRIDGQLTCL
Ga0311338_117745421	3300030007	Palsa	MPGRIAARLDELGLTLHGPHPPHDPLDAVVVHDNVARTSGQLPRIKGQLTCT
Ga0311344_101890403	3300030020	Bog	MTVADGGRVRARLGELGLTLHGPHPPHHPLDAVVVHGGVARTSGQLPRIE
Ga0302184_102155622	3300030490	Palsa	MALKEGKISARLAELGLTLYGPHPPHDPLDAVVIHDGVARTSGQLPRIAGE
Ga0302183_104058702	3300030509	Palsa	MSEGRIHARLAELGLTLHGPHPPHDPLDAVIVHAGV
Ga0311355_117173472	3300030580	Palsa	VTAEGKIAARLAALGLTLHGPHPPHDPLDAVVIHNGMART
Ga0210259_117851082	3300030625	Soil	MQGRIAARLDALGLTLHGPHPPHDPLDAVGGLDNVARTSGQLPRINGQLTCTGTLGADVSVDDGA
Ga0311345_103541461	3300030688	Bog	MAVSEGKISARLAELGLTLHGPHPPHDPLDAVVVHGGVARTSG
Ga0311345_105693001	3300030688	Bog	MSEGKVSARLAELGLTLHGPHPPHDPLDAVVVHGGVARTSGQLPRIAGELTCL
Ga0311345_108584072	3300030688	Bog	MADAPEGRVRARLAELGLRLHGPHPPHQPLDAVVVHGGVARTS
Ga0302311_106345241	3300030739	Palsa	MPEGRIAARVAELGLTLYGPHPPHDPLDAVVVHAGTARTSGQLP
Ga0302314_106501081	3300030906	Palsa	MPDGPTSAGKIAARLAELGLTLHGPHPPHDPLDAVVIFNGTARTSGQLPRIDGELT
Ga0302314_109066392	3300030906	Palsa	MSEGKIATRLNELGLTLHGPHPPHDPLDSVVLHNGIARTSGQLPR
Ga0265760_102036801	3300031090	Soil	MSEGRIRARLAELGLALHGPHPPHDPLDAVIVHAGVARTSGQLPRIDG
(restricted) Ga0255310_101772952	3300031197	Sandy Soil	VSIAARLAELGLVLHGPHPPHDPLLAVVVHDGVARTS
Ga0302325_121692061	3300031234	Palsa	MSEGTIAARLAELGLTLQGPHPPHDPLDAVVIHNGTARTSGQLPRIDG
Ga0302324_1016599691	3300031236	Palsa	MADGPMSGNKIAARLAALGLTLHGPHPPHDPLDAVVIFNGMARTSG
Ga0265339_106096242	3300031249	Rhizosphere	MEGKISARLAELGLTLHGPHPPHDPLDAVVIHDGVARTSGQLPRIAGELT
Ga0302140_105020642	3300031261	Bog	MAVSEGKISARLAELGLTLHGPHPPHDPLDAVVVHGGVARTSGQLPRIAGELTCLGR
Ga0302326_122241402	3300031525	Palsa	MRAMPGRIAARLDELGLTLHGPHPPHDPLDAVVVHGNVART
Ga0318516_103039512	3300031543	Soil	MSDGVVRARLAELGLTLHGPHPPHDPLDAVVVYDGVARTSGQLPRIEGEL
Ga0318534_104856852	3300031544	Soil	VSDGIVRARLAELGLTLHGPHLPHDPLDAVVVWDGVARTSG
Ga0318541_105750551	3300031545	Soil	VSDGVVRARLAELGLTLHGPHPPHDPLDAVVEWDG
Ga0310915_104639962	3300031573	Soil	VSEGRVRTRLDELGLTLHGPHPPHDPLDAVVVHEGVARTSGQLPRIAGELTCLG
Ga0307374_103389951	3300031670	Soil	VSEGKIRARLSELGLTLHGPHPPHDPLDAVVVHGGVARTSGQLPR
Ga0307372_102323331	3300031671	Soil	MPPFDARVEELGLILHGPHPPHDPLDAVVVHGGLARTSGQLPRIE
Ga0307373_103209943	3300031672	Soil	MPGLIEQRIAELGLTLYGPHPPHDPLVGVVVHGGVART
Ga0318572_103054572	3300031681	Soil	MSDGVVRARLAELGLTLHGPHPPHDPLDAVVVYDGVARTSGQLPRIE
Ga0310686_1174927351	3300031708	Soil	MSDGIIRARLNELGLTLHGPHPPHDPLDAVVVHDGIARTSGQLPRIDGK
Ga0306917_105327832	3300031719	Soil	VSEGSVRDRLDELGLTLHGPHPPHDPLDAVVVHQGVARTSGQLPRIAGELTCLGRLGDTV
Ga0318493_101246793	3300031723	Soil	VSEGRVRTRLDELGLTLHGPHPPHDPLDAVVVHEGVA
Ga0318493_102975971	3300031723	Soil	VSDGVVRARLAELGLTLHGPHPPHDPLDAVVVWDGVARTSGQLPRVDGRLTC
Ga0318492_106891382	3300031748	Soil	MTTGSAADGDRVRVRLAELGLTLHGPHPPHDPLDAVVVHDGVARTSGQLPRVEGRLTCIG
Ga0307475_101305914	3300031754	Hardwood Forest Soil	VRARLDELGLTLHGPHPPHDPLDAVVVHDGVARTSGQLPRIA
Ga0318535_101362791	3300031764	Soil	VPSYDARVAELGLTLYGPHPPHDPLDAVVVHGGVARTSGQLPRIE
Ga0318546_101531484	3300031771	Soil	VPSYDARVAELGLTLYGPHPPHDPLDAVVVHGGVARTSGQLPRIEGRLTCI
Ga0318543_104077542	3300031777	Soil	MSDDTVRSRLAELGLTLHGPHPPHDPLDAVVLWDGVARTSGQLPRVDGRLTCIG
Ga0318547_107615501	3300031781	Soil	VSDGAIRARLAQLGLTLYGPHPPNDPLDAVVVHDGVARTSGQLPRI
Ga0318565_104502772	3300031799	Soil	VSHGTVRSRLAELGLTLHGPHPPHDPLDAVVVWDGVARTSGQLPR
Ga0307478_115016331	3300031823	Hardwood Forest Soil	VRARLHELGLTLHGPHPPHDPLDAVVVHDGVARTSGQLPRIAGEL
Ga0318499_101414642	3300031832	Soil	VSDGVVRARLAELGLTLHGPHPPHDPLDAVVVWDGVARTSGQLPRVDG
Ga0318495_100638823	3300031860	Soil	VSQGSVRDRLDELGLTLHGPHPPHDPLDAVVVHQG
Ga0310912_111834591	3300031941	Soil	VPSYDARVAELGLTLYGPHPPHDPLDAVVVHGGVAR
Ga0306926_109719331	3300031954	Soil	VPSYDARVAELGLTLYGPHPPHDPLDAVVVHGGVARTSGQLPRIEGRLTCIGTLGV
Ga0307479_120356731	3300031962	Hardwood Forest Soil	VKARLHELGLTLHGPHPPHDPLDAVVVHDGVARTSGQLP
Ga0318570_104595432	3300032054	Soil	VSDGAIRARLAQLGLTLYGPHPPHDPLDAVVVHDGVAR
Ga0318525_102660321	3300032089	Soil	VSDGVVRARLAELGLTLHGPHPPHDPLDAVVVWDGVA
Ga0318525_102759431	3300032089	Soil	MSDDTVRSRLAELGLTLHGPHPPHDPLDAVVLWDGVARTSGQLPRVDGRLTCIGRLGD
Ga0318518_102483121	3300032090	Soil	VSDGAIRARLAQLGLTLYGPHPPHDPLDAVVVHAGV
Ga0335078_120335831	3300032805	Soil	MRPMTGRVSQRLQALGLTLYGPHPPHDPLDAVVVHDGVARTSGQLPR
Ga0334854_035111_2_148	3300033829	Soil	MAVTDGETGTVRARLAELGLVLHGPHPPHDPLDAVVVHDGVARTSGQLP
Ga0334827_226627_412_549	3300034065	Soil	MAVSEGKISARLAELGLTLHGPHPPHDPLDAVVVHGGVARTSGQLP
Ga0370483_0083489_3_119	3300034124	Untreated Peat Soil	MSEGRIHARLAELGLTLHGPHPPHDPLDAVIVHAGVART

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters