Metagenome Family F059800

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F059800
Family Type	Metagenome
Number of Sequences	133
Average Sequence Length	49 residues
Representative Sequence	LTALSEWLQLMLAEIARKREELERARAEEAQRLTESEAARQRAEQGAAENPTTR
Number of Associated Samples	107
Number of Associated Scaffolds	133

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	78.63 %
% of genes near scaffold ends (potentially truncated)	20.30 %
% of genes from short scaffolds (< 2000 bps)	65.41 %
Associated GOLD sequencing projects	97
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (91.729 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (24.060 % of family members)
Environment Ontology (ENVO)	Unclassified (47.368 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (71.429 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Mixed	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 85.19% β-sheet: 0.00% Coil/Unstructured: 14.81%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 133 Family Scaffolds
PF04984	Phage_sheath_1	45.11
PF03734	YkuD	26.32
PF04536	TPM_phosphatase	6.77
PF12697	Abhydrolase_6	1.50
PF05378	Hydant_A_N	1.50
PF08241	Methyltransf_11	0.75
PF00118	Cpn60_TCP1	0.75
PF06980	DUF1302	0.75
PF02702	KdpD	0.75
PF03449	GreA_GreB_N	0.75
PF00581	Rhodanese	0.75
PF02538	Hydantoinase_B	0.75
PF03435	Sacchrp_dh_NADP	0.75

COG ID	Name	Functional Category	% Frequency in 133 Family Scaffolds
COG3497	Phage tail sheath protein FI	Mobilome: prophages, transposons [X]	45.11
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	26.32
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	26.32
COG0145	N-methylhydantoinase A/oxoprolinase/acetone carboxylase, beta subunit	Amino acid transport and metabolism [E]	3.01
COG0146	N-methylhydantoinase B/oxoprolinase/acetone carboxylase, alpha subunit	Amino acid transport and metabolism [E]	1.50
COG0459	Chaperonin GroEL (HSP60 family)	Posttranslational modification, protein turnover, chaperones [O]	0.75
COG0782	Transcription elongation factor, GreA/GreB family	Transcription [K]	0.75
COG2205	K+-sensing histidine kinase KdpD	Signal transduction mechanisms [T]	0.75

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	91.73 %
Unclassified	root	N/A	8.27 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	91.73 %
Unclassified	root	N/A	8.27 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	91.73 %
Unclassified	root	N/A	8.27 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	66.17 %
Unclassified	root	N/A	8.27 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	17.29 %
Unclassified	root	N/A	8.27 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	8.27 %
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	5.26 %
Nitrosomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	1.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	8.27 %
Steroidobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae	3.76 %
Sinobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae	1.50 %
Nitrosomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	1.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	8.27 %
Steroidobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	3.76 %
Sinobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae	1.50 %
Nitrosomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	1.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	8.27 %
Steroidobacter denitrificans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	3.76 %
Sinobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae	1.50 %
Nitrosomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	1.50 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001182\|JGI12668J13544_1006803	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300001593\|JGI12635J15846_10488777	All Organisms → cellular organisms → Bacteria	728	Open in IMG/M
3300001593\|JGI12635J15846_10531946	All Organisms → cellular organisms → Bacteria	690	Open in IMG/M
3300001661\|JGI12053J15887_10116085	All Organisms → cellular organisms → Bacteria	1436	Open in IMG/M
3300002245\|JGIcombinedJ26739_100918855	All Organisms → cellular organisms → Bacteria	758	Open in IMG/M
3300002557\|JGI25381J37097_1006190	All Organisms → cellular organisms → Bacteria → Proteobacteria	2105	Open in IMG/M
3300002557\|JGI25381J37097_1051049	All Organisms → cellular organisms → Bacteria → Proteobacteria	677	Open in IMG/M
3300002909\|JGI25388J43891_1009040	All Organisms → cellular organisms → Bacteria → Proteobacteria	1898	Open in IMG/M
3300005166\|Ga0066674_10105086	All Organisms → cellular organisms → Bacteria	1313	Open in IMG/M
3300005167\|Ga0066672_10005191	All Organisms → cellular organisms → Bacteria → Proteobacteria	5707	Open in IMG/M
3300005167\|Ga0066672_10901568	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	547	Open in IMG/M
3300005171\|Ga0066677_10011161	All Organisms → cellular organisms → Bacteria → Proteobacteria	3899	Open in IMG/M
3300005174\|Ga0066680_10040556	All Organisms → cellular organisms → Bacteria	2691	Open in IMG/M
3300005175\|Ga0066673_10330720	All Organisms → cellular organisms → Bacteria → Proteobacteria	889	Open in IMG/M
3300005179\|Ga0066684_10354655	All Organisms → cellular organisms → Bacteria	981	Open in IMG/M
3300005180\|Ga0066685_10003390	All Organisms → cellular organisms → Bacteria → Proteobacteria	7730	Open in IMG/M
3300005186\|Ga0066676_10061501	All Organisms → cellular organisms → Bacteria	2173	Open in IMG/M
3300005186\|Ga0066676_10132649	All Organisms → cellular organisms → Bacteria	1549	Open in IMG/M
3300005187\|Ga0066675_11194457	All Organisms → cellular organisms → Bacteria → Proteobacteria	565	Open in IMG/M
3300005446\|Ga0066686_10625138	All Organisms → cellular organisms → Bacteria → Proteobacteria	732	Open in IMG/M
3300005446\|Ga0066686_10672767	All Organisms → cellular organisms → Bacteria	701	Open in IMG/M
3300005450\|Ga0066682_10003323	All Organisms → cellular organisms → Bacteria → Proteobacteria	7285	Open in IMG/M
3300005540\|Ga0066697_10004703	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	6536	Open in IMG/M
3300005552\|Ga0066701_10051614	All Organisms → cellular organisms → Bacteria → Proteobacteria	2260	Open in IMG/M
3300005566\|Ga0066693_10001459	All Organisms → cellular organisms → Bacteria → Proteobacteria	5308	Open in IMG/M
3300005576\|Ga0066708_10878850	All Organisms → cellular organisms → Bacteria → Proteobacteria	560	Open in IMG/M
3300005587\|Ga0066654_10002003	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	6484	Open in IMG/M
3300005610\|Ga0070763_10895648	All Organisms → cellular organisms → Bacteria	528	Open in IMG/M
3300006034\|Ga0066656_11106992	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300006797\|Ga0066659_10003711	All Organisms → cellular organisms → Bacteria → Proteobacteria	7314	Open in IMG/M
3300006797\|Ga0066659_10604328	All Organisms → cellular organisms → Bacteria	890	Open in IMG/M
3300006797\|Ga0066659_11171094	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	642	Open in IMG/M
3300007255\|Ga0099791_10072841	All Organisms → cellular organisms → Bacteria → Proteobacteria	1559	Open in IMG/M
3300007258\|Ga0099793_10718258	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M
3300007265\|Ga0099794_10118719	All Organisms → cellular organisms → Bacteria → Proteobacteria	1329	Open in IMG/M
3300009090\|Ga0099827_10707640	All Organisms → cellular organisms → Bacteria	871	Open in IMG/M
3300009137\|Ga0066709_100004205	All Organisms → cellular organisms → Bacteria → Proteobacteria	11377	Open in IMG/M
3300009137\|Ga0066709_100909402	All Organisms → cellular organisms → Bacteria → Proteobacteria	1283	Open in IMG/M
3300010303\|Ga0134082_10107833	All Organisms → cellular organisms → Bacteria	1106	Open in IMG/M
3300010320\|Ga0134109_10137736	Not Available	872	Open in IMG/M
3300010321\|Ga0134067_10005706	All Organisms → cellular organisms → Bacteria	3345	Open in IMG/M
3300010322\|Ga0134084_10011240	All Organisms → cellular organisms → Bacteria → Proteobacteria	2265	Open in IMG/M
3300010323\|Ga0134086_10226452	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	705	Open in IMG/M
3300010325\|Ga0134064_10001863	All Organisms → cellular organisms → Bacteria	4809	Open in IMG/M
3300010326\|Ga0134065_10019392	All Organisms → cellular organisms → Bacteria → Proteobacteria	1904	Open in IMG/M
3300012198\|Ga0137364_10015348	All Organisms → cellular organisms → Bacteria → Proteobacteria	4546	Open in IMG/M
3300012203\|Ga0137399_10279440	All Organisms → cellular organisms → Bacteria → Proteobacteria	1375	Open in IMG/M
3300012211\|Ga0137377_10187282	All Organisms → cellular organisms → Bacteria → Proteobacteria	1987	Open in IMG/M
3300012285\|Ga0137370_10172941	All Organisms → cellular organisms → Bacteria → Proteobacteria	1258	Open in IMG/M
3300012349\|Ga0137387_10159364	All Organisms → cellular organisms → Bacteria → Proteobacteria	1610	Open in IMG/M
3300012683\|Ga0137398_10166064	All Organisms → cellular organisms → Bacteria → Proteobacteria	1441	Open in IMG/M
3300012917\|Ga0137395_10373880	All Organisms → cellular organisms → Bacteria → Proteobacteria	1018	Open in IMG/M
3300012917\|Ga0137395_10526811	All Organisms → cellular organisms → Bacteria	852	Open in IMG/M
3300012925\|Ga0137419_10225554	All Organisms → cellular organisms → Bacteria → Proteobacteria	1400	Open in IMG/M
3300012925\|Ga0137419_10572532	All Organisms → cellular organisms → Bacteria → Proteobacteria	904	Open in IMG/M
3300012929\|Ga0137404_10466736	All Organisms → cellular organisms → Bacteria → Proteobacteria	1122	Open in IMG/M
3300012971\|Ga0126369_11998006	All Organisms → cellular organisms → Bacteria	668	Open in IMG/M
3300012977\|Ga0134087_10270178	All Organisms → cellular organisms → Bacteria → Proteobacteria	786	Open in IMG/M
3300014150\|Ga0134081_10096005	All Organisms → cellular organisms → Bacteria → Proteobacteria	930	Open in IMG/M
3300014157\|Ga0134078_10003365	All Organisms → cellular organisms → Bacteria → Proteobacteria	4272	Open in IMG/M
3300014658\|Ga0181519_10233748	All Organisms → cellular organisms → Bacteria → Proteobacteria	1151	Open in IMG/M
3300015051\|Ga0137414_1097383	All Organisms → cellular organisms → Bacteria → Proteobacteria	1283	Open in IMG/M
3300015054\|Ga0137420_1034968	All Organisms → cellular organisms → Bacteria → Proteobacteria	1163	Open in IMG/M
3300015054\|Ga0137420_1209147	Not Available	710	Open in IMG/M
3300017973\|Ga0187780_10729462	All Organisms → cellular organisms → Bacteria	715	Open in IMG/M
3300018062\|Ga0187784_10781562	All Organisms → cellular organisms → Bacteria	762	Open in IMG/M
3300018431\|Ga0066655_10003922	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae	5881	Open in IMG/M
3300018431\|Ga0066655_10064674	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	1938	Open in IMG/M
3300018433\|Ga0066667_10029573	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae	3059	Open in IMG/M
3300018433\|Ga0066667_10324109	All Organisms → cellular organisms → Bacteria	1211	Open in IMG/M
3300018433\|Ga0066667_11357095	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	623	Open in IMG/M
3300018468\|Ga0066662_10058239	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2510	Open in IMG/M
3300018468\|Ga0066662_11979919	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300018482\|Ga0066669_10170053	All Organisms → cellular organisms → Bacteria → Proteobacteria	1630	Open in IMG/M
3300018482\|Ga0066669_10600571	Not Available	964	Open in IMG/M
3300019866\|Ga0193756_1017389	All Organisms → cellular organisms → Bacteria	988	Open in IMG/M
3300020022\|Ga0193733_1001529	All Organisms → cellular organisms → Bacteria → Proteobacteria	6886	Open in IMG/M
3300020022\|Ga0193733_1032711	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	1469	Open in IMG/M
3300020170\|Ga0179594_10017356	All Organisms → cellular organisms → Bacteria → Proteobacteria	2132	Open in IMG/M
3300020579\|Ga0210407_10302452	All Organisms → cellular organisms → Bacteria → Proteobacteria	1249	Open in IMG/M
3300020579\|Ga0210407_10611488	All Organisms → cellular organisms → Bacteria	849	Open in IMG/M
3300021086\|Ga0179596_10015414	All Organisms → cellular organisms → Bacteria → Proteobacteria	2642	Open in IMG/M
3300021086\|Ga0179596_10321934	All Organisms → cellular organisms → Bacteria	773	Open in IMG/M
3300021171\|Ga0210405_10033336	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	4117	Open in IMG/M
3300021432\|Ga0210384_10378071	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	1275	Open in IMG/M
3300021432\|Ga0210384_10963673	Not Available	754	Open in IMG/M
3300026277\|Ga0209350_1000126	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	50157	Open in IMG/M
3300026277\|Ga0209350_1000723	All Organisms → cellular organisms → Bacteria → Proteobacteria	16641	Open in IMG/M
3300026295\|Ga0209234_1197163	Not Available	687	Open in IMG/M
3300026295\|Ga0209234_1259837	All Organisms → cellular organisms → Bacteria → Proteobacteria	562	Open in IMG/M
3300026301\|Ga0209238_1056552	All Organisms → cellular organisms → Bacteria → Proteobacteria	1399	Open in IMG/M
3300026307\|Ga0209469_1036414	All Organisms → cellular organisms → Bacteria → Proteobacteria	1619	Open in IMG/M
3300026309\|Ga0209055_1000114	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	52127	Open in IMG/M
3300026309\|Ga0209055_1009031	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	5382	Open in IMG/M
3300026310\|Ga0209239_1001427	All Organisms → cellular organisms → Bacteria → Proteobacteria	14228	Open in IMG/M
3300026312\|Ga0209153_1001645	All Organisms → cellular organisms → Bacteria → Proteobacteria	7623	Open in IMG/M
3300026312\|Ga0209153_1011984	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2746	Open in IMG/M
3300026315\|Ga0209686_1000389	All Organisms → cellular organisms → Bacteria → Proteobacteria	23024	Open in IMG/M
3300026328\|Ga0209802_1079265	All Organisms → cellular organisms → Bacteria → Proteobacteria	1529	Open in IMG/M
3300026330\|Ga0209473_1001882	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	11627	Open in IMG/M
3300026342\|Ga0209057_1102061	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1148	Open in IMG/M
3300026361\|Ga0257176_1004159	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1605	Open in IMG/M
3300026376\|Ga0257167_1056412	All Organisms → cellular organisms → Bacteria	608	Open in IMG/M
3300026515\|Ga0257158_1064119	All Organisms → cellular organisms → Bacteria	694	Open in IMG/M
3300026529\|Ga0209806_1002308	All Organisms → cellular organisms → Bacteria → Proteobacteria	11954	Open in IMG/M
3300026540\|Ga0209376_1027599	All Organisms → cellular organisms → Bacteria → Proteobacteria	3612	Open in IMG/M
3300026551\|Ga0209648_10318156	All Organisms → cellular organisms → Bacteria → Proteobacteria	1099	Open in IMG/M
3300026557\|Ga0179587_10425195	All Organisms → cellular organisms → Bacteria	867	Open in IMG/M
3300027381\|Ga0208983_1020340	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1295	Open in IMG/M
3300027480\|Ga0208993_1059234	All Organisms → cellular organisms → Bacteria	694	Open in IMG/M
3300027512\|Ga0209179_1139237	Not Available	542	Open in IMG/M
3300027535\|Ga0209734_1000038	All Organisms → cellular organisms → Bacteria → Proteobacteria	12064	Open in IMG/M
3300027548\|Ga0209523_1025237	Not Available	1176	Open in IMG/M
3300027587\|Ga0209220_1007966	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	2823	Open in IMG/M
3300027591\|Ga0209733_1000405	All Organisms → cellular organisms → Bacteria → Proteobacteria	7921	Open in IMG/M
3300027605\|Ga0209329_1016412	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	1463	Open in IMG/M
3300027610\|Ga0209528_1006684	All Organisms → cellular organisms → Bacteria → Proteobacteria	2464	Open in IMG/M
3300027616\|Ga0209106_1151718	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300027645\|Ga0209117_1063857	All Organisms → cellular organisms → Bacteria → Proteobacteria	1062	Open in IMG/M
3300027669\|Ga0208981_1043913	All Organisms → cellular organisms → Bacteria → Proteobacteria	1140	Open in IMG/M
3300027894\|Ga0209068_10263429	All Organisms → cellular organisms → Bacteria → Proteobacteria	961	Open in IMG/M
3300028906\|Ga0308309_10503110	All Organisms → cellular organisms → Bacteria	1048	Open in IMG/M
3300031718\|Ga0307474_10407320	All Organisms → cellular organisms → Bacteria → Proteobacteria	1059	Open in IMG/M
3300031720\|Ga0307469_10006224	All Organisms → cellular organisms → Bacteria → Proteobacteria	5411	Open in IMG/M
3300031720\|Ga0307469_11540343	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	637	Open in IMG/M
3300031753\|Ga0307477_10033252	All Organisms → cellular organisms → Bacteria → Proteobacteria	3533	Open in IMG/M
3300031754\|Ga0307475_10038183	All Organisms → cellular organisms → Bacteria → Proteobacteria	3539	Open in IMG/M
3300031962\|Ga0307479_11304756	Not Available	687	Open in IMG/M
3300032180\|Ga0307471_100506770	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1355	Open in IMG/M
3300032180\|Ga0307471_104152103	Not Available	511	Open in IMG/M
3300032205\|Ga0307472_100026219	All Organisms → cellular organisms → Bacteria → Proteobacteria	3296	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	98.50%
Aquatic	Environmental → Aquatic	1.50%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	98.50%
Freshwater	Environmental → Aquatic → Freshwater	0.75%
Sediment	Environmental → Aquatic → Sediment	0.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	80.45%
Loam	Environmental → Terrestrial → Soil → Loam	15.79%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.26%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.75%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.75%

Habitat	Taxonomy	Distribution
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	39.85%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.82%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	13.53%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	12.78%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.26%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.26%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.75%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.75%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	24.06%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	17.29%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	15.79%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	12.03%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	7.52%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.02%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.26%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.26%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.50%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.50%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.75%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.75%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.75%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.75%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001182	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm	Environmental	Open in IMG/M
3300002909	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005566	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG	Environmental	Open in IMG/M
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014150	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300014658	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_10_metaG	Environmental	Open in IMG/M
3300015051	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019866	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1m1	Environmental	Open in IMG/M
3300020022	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s2	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300026277	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026295	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026307	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123 (SPAdes)	Environmental	Open in IMG/M
3300026309	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)	Environmental	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026312	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes)	Environmental	Open in IMG/M
3300026315	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126 (SPAdes)	Environmental	Open in IMG/M
3300026328	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)	Environmental	Open in IMG/M
3300026330	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)	Environmental	Open in IMG/M
3300026334	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)	Environmental	Open in IMG/M
3300026342	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)	Environmental	Open in IMG/M
3300026361	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-B	Environmental	Open in IMG/M
3300026376	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-B	Environmental	Open in IMG/M
3300026515	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-A	Environmental	Open in IMG/M
3300026529	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)	Environmental	Open in IMG/M
3300026540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027381	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027480	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_M3 (SPAdes)	Environmental	Open in IMG/M
3300027512	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 (SPAdes)	Environmental	Open in IMG/M
3300027535	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M2 (SPAdes)	Environmental	Open in IMG/M
3300027548	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027587	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M3 (SPAdes)	Environmental	Open in IMG/M
3300027591	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1 (SPAdes)	Environmental	Open in IMG/M
3300027605	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027610	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027616	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300027645	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)	Environmental	Open in IMG/M
3300027669	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M1 (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12668J13544_10068032	3300001182	Forest Soil	MALSEWLQLMLAEIARKREELERARAEEAQRLTESEPARQRTK*
JGI12635J15846_104887772	3300001593	Forest Soil	LTALSEWLQLMLAEIARKREELERARAEEARRLTESEAARQRGAQGAAENPTTRDTLC*
JGI12635J15846_105319462	3300001593	Forest Soil	MAPSEWLQLMLAEIARKREELERARAEEAQRLTESEAARQRAEQGAAENLTTR*
JGI12053J15887_101160852	3300001661	Forest Soil	MALSEWLQLMLAEIARKREDLERARAEAAQRLTESEAARQRAEQAAAENPTTR*
JGIcombinedJ26739_1009188552	3300002245	Forest Soil	LIALSEWLQLMLAEIARKREDLERARAEEAQRLTESEAARQRAEQGAAENPTTH*
JGI25381J37097_10061904	3300002557	Grasslands Soil	VTALSEWLQLMLAEIARKREDLERARAEEAQRLREEGARRSEPGAAENPTTR*
JGI25381J37097_10510492	3300002557	Grasslands Soil	VTALSEWLQLMLAEIARKREDLERARAEEAQRQREEDARQRTEPGAAENPTAR*
JGI25388J43891_10090402	3300002909	Grasslands Soil	VTALSEWLQLMLAEIARKREDLARARAEEAQRLREEGARQRSEPGAAREGARQRSEPGAARNPTTR*
Ga0066674_101050862	3300005166	Soil	VTALSEWLQLMLAEIARKREDLERARAEEAQRLRESAGAQPRAGQEAAENPTTR*
Ga0066672_100051913	3300005167	Soil	VTALSEWLQLMLAEIARKREDVERARAEEAQRLREEGARQRSEPGAARNPTTR*
Ga0066672_109015682	3300005167	Soil	VTAMSDWLQLMLAEIARKREELERARAEEAQRLKESEAARRHGEPGAARASD*
Ga0066677_100111613	3300005171	Soil	VTALSEWLQLMLAEIARKREDLARARAEEAQRLREEGARQRSEPGAARNPTTR*
Ga0066680_100405562	3300005174	Soil	VIAMSDWLQLMLAEIARKREELERARAEEAQRLKESEAARRHGEPGAARASD*
Ga0066673_103307202	3300005175	Soil	VTALSEWLQLMLAEIARKREDLERARAEEAQRLREEGARQRSEPGAAQNPTTR*
Ga0066684_103546552	3300005179	Soil	VTALSEWLQLMLAEIARKREDLERARAEEAQRLREEGARPHSEPGAAENPTTR*
Ga0066685_100033903	3300005180	Soil	VTAMSDWLQLMLAEIARKREELERARAEEAQRLEESEAARRHGEPGAARASD*
Ga0066676_100615012	3300005186	Soil	VTAMSDWLQLMLAEIARKREELEHARAEEAQRLKESEAARRHGEPGAARASD*
Ga0066676_101326492	3300005186	Soil	VAALSEWLQLMLAEIARKREDLERARAEEAQRLRESAGAQPRAGQEAAENPTTR*
Ga0066675_111944571	3300005187	Soil	WLQLMLAEIARKREDLERARAEEAQRLREEGARQRSEPGAAQNPTTR*
Ga0066686_106251381	3300005446	Soil	VTAMSDWLQLMLAEIARKREELERARAEEAQRLKESEAARRHGEPGAARAS
Ga0066686_106727672	3300005446	Soil	VAALSEWLQVMLAEIARKREDLERARAEEAQRLRESAGAQPRAGQEAAENPTTR*
Ga0066682_100033232	3300005450	Soil	MSDWLQLMLAEIARKREELERARAEEAQRLEESEAARRHGEPGAARASD*
Ga0066697_100047032	3300005540	Soil	MSDWLQLMLAEIARKREELERARAEEAQRLKESEAARRHGEPGAARASD*
Ga0066701_100516142	3300005552	Soil	VTAMSDWLQLMLAEIARKRDELERARAEEAQRLEESEAARRHGEPGAARASD*
Ga0066693_100014595	3300005566	Soil	VTAMSDWLQLMLAEIARKREELERARAEEAQRLEESEAVRRHGERGAARASD*
Ga0066708_108788501	3300005576	Soil	WLQLMLAEIARKREDLARARAEEAQRLREEGARQRSEPGAARNPTTR*
Ga0066654_100020038	3300005587	Soil	MSDWLQLMLAEIARKREELERARAEEAQRLEESEAARRYGEPGAARASD*
Ga0070763_108956482	3300005610	Soil	LTALSEWLQLMLAEIARKREDLQRARAEEAQRLTESDAARQRAEQGAAENPTTR*
Ga0066656_111069922	3300006034	Soil	VTAMSDWLQLMLAEIARKREELERARAEEAQRLEESEAARRYGEPGAARASD*
Ga0066659_100037113	3300006797	Soil	VTALSEWLQLMLAEIARKREDLERARAEEAQRLREEGARQLGEPGAARNPTTR*
Ga0066659_106043282	3300006797	Soil	VCRVTAMSDWLQLMLAEIARKREELERARAEEAQRLKESEATRRHGEPGAARASD*
Ga0066659_111710942	3300006797	Soil	VTAMSDWLQLMLAEIARKREELERARAEEAQRLKESEA
Ga0099791_100728412	3300007255	Vadose Zone Soil	LTALSEWLQLMLAEIARKREELERARAEEAQRLTESEAVRQRAE*
Ga0099793_107182582	3300007258	Vadose Zone Soil	LTALSEWLQLMLAEIARKREELERARAEEAQRLTESEAARQRAQ*
Ga0099794_101187192	3300007265	Vadose Zone Soil	LTALSEWLQLMLAEIARKREELERARAEEAQRLTESEAARQRAE*
Ga0099827_107076402	3300009090	Vadose Zone Soil	LTALSEWLQLMLAEIARKREDLERARAEEAQRLTESEAARQRAEPGAAEILTTR*
Ga0066709_1000042057	3300009137	Grasslands Soil	LTVTALSEWLQLMLAEIARKREDLERARAEEAQRLRESAGAQPRAGQEAAENPTTR*
Ga0066709_1009094021	3300009137	Grasslands Soil	VCAVTALSEWLQLMLAEIARKREDLERARAEEAQRLTEEGARQRSEPGAAQNPTTR*
Ga0134082_101078332	3300010303	Grasslands Soil	VTALSEWLQLMLAEIARKREDLERARAEEAQRLREEGARQRSEPGAARNPTTR*
Ga0134109_101377362	3300010320	Grasslands Soil	VTALSEWLQLMLAEIARKREDLERARAEEAQRLREEGAQQRSEPGAAQNPTTR*
Ga0134067_100057063	3300010321	Grasslands Soil	VCAVTALSEWLQLMLAEIARKREDLARARAEEAQRLREEGARQRSEPGAARNPTTR*
Ga0134084_100112402	3300010322	Grasslands Soil	VTALSEWLQLMLAEIARKREDLERARAEEAQRLREEGARPRSEPGAAENPTTR*
Ga0134086_102264522	3300010323	Grasslands Soil	MLAEIARKREELERARAEEARRLRESEAALRHGEPGAARASD*
Ga0134064_100018632	3300010325	Grasslands Soil	VCAVTALSEWLQLMLAEIARKREDLERARAEEAQRLREEGARQRSEPGAAQNPTTR*
Ga0134065_100193921	3300010326	Grasslands Soil	VCAVTALSEWLQLMLAEIARKREDLERARAEEAQRLREEGARPHSEPGAAENPTTR*
Ga0137364_100153483	3300012198	Vadose Zone Soil	MSDWLQLMLAEIARKREELERARAEEAQRLEESEAAARRAGTARASD*
Ga0137399_102794402	3300012203	Vadose Zone Soil	LTALSEWLQLMLAEIVRKREDLERARAEEAQRLRESEAARQRAEQGAAENLTTR*
Ga0137377_101872821	3300012211	Vadose Zone Soil	MSDWLQLMLAEIARKREELERARAEEAQRLEESEAARRAGSARASD*
Ga0137370_101729412	3300012285	Vadose Zone Soil	LTVTALSEWLQLMLAEIARKREDLERARAEEAQRLRESAGAQPRAGQGAAENPTTR*
Ga0137387_101593642	3300012349	Vadose Zone Soil	MSDWLQLMLAEIARKREELERARAEEAQRLEESEAVRRHGEPGAARASD*
Ga0137398_101660642	3300012683	Vadose Zone Soil	MSDWLQLMLTEIARKREELERARAEEAQRLKESEAARRHGEPGAARASD*
Ga0137395_103738802	3300012917	Vadose Zone Soil	ALTALSEWLQLMLAEIARKREELERARAEEAQRLTESEAARQRAE*
Ga0137395_105268111	3300012917	Vadose Zone Soil	LTALSEWLQLMLAEIARKREELERARAEEAQRLTESEAA
Ga0137419_102255542	3300012925	Vadose Zone Soil	LTALSEWLQLMLAEIARKREDLERARAEEVQRLTESEATRQRAEPGAAENLTTR*
Ga0137419_105725322	3300012925	Vadose Zone Soil	LTALSEWLQLMLAEIARKREELERARAEEAQRLTESEAARQRAD*
Ga0137404_104667362	3300012929	Vadose Zone Soil	LALTALSEWLQLMLAEIVRKREDLERARAEEAQRLRESEAARQRAD*
Ga0126369_119980062	3300012971	Tropical Forest Soil	LTALSEWLQLMLAEIARKREEREHARAEEARRRSEHEA
Ga0134087_102701782	3300012977	Grasslands Soil	MSDWLQLMLAEIARKREELERARAEEAQRLEESEAVRRHGERGAARASD*
Ga0134081_100960052	3300014150	Grasslands Soil	WLQLMLAEIARKREDLERARAEEAQRLREEGARPHSEPGAAENPTTR*
Ga0134078_100033653	3300014157	Grasslands Soil	VTALSEWLQLMLAEIARKREDLESARAEEAQRLREEGARQRSEPGAAQNPTTR*
Ga0181519_102337482	3300014658	Bog	VTALSPWLQLMLAEIARKQEELQQARAEEAQRTQEAAAPRAVPPVRSARR*
Ga0137414_10973831	3300015051	Vadose Zone Soil	LSEWLQLMLAEVARKREDLERARAEEAQRLREREGAQPRTEQGAAQNPNAR*
Ga0137420_10349682	3300015054	Vadose Zone Soil	LTALSEWLQLMLAEIARKREELERARAEEAQRLAESEAVRQRAE*
Ga0137420_12091472	3300015054	Vadose Zone Soil	LTALSEWLQLMLAEIARKREELERARAEEAQRLTESEAVRRRAE*
Ga0187780_107294622	3300017973	Tropical Peatland	MASEPAQSQALSQWLQLMLAEITAKREALERARAEEARRDEESAA
Ga0187784_107815621	3300018062	Tropical Peatland	LPALSEWLQLMLGEIARKREELERGRAEQAQRALESDAASRDA
Ga0066655_100039222	3300018431	Grasslands Soil	MSDWLQLMLAEIARKREELERARAEEAQRLEESEAARRHGEPGAARASD
Ga0066655_100646742	3300018431	Grasslands Soil	VTALSEWLQLMLAEIARKREDLERARAEEAQRLREEGAQQRSEPGAAQNPTTR
Ga0066667_100295732	3300018433	Grasslands Soil	VTALSEWLQLMLAEIARKREDLERARAEEAQRLREEGARQRSEPGAAQNPTTR
Ga0066667_103241092	3300018433	Grasslands Soil	VTALSEWLQLMLAEIARKREDLERARAEEAQRLREEGARPHSEPGAAENPTTR
Ga0066667_113570952	3300018433	Grasslands Soil	VSAMSDWLQLMLAEIARKREELERARAEEAQRLEESEAARRHGEPGAARASD
Ga0066662_100582392	3300018468	Grasslands Soil	VTAMSDWLQLMLAEIARKREELERARAEEAQRLEESEAARRHGEPGAARASD
Ga0066662_119799192	3300018468	Grasslands Soil	VTALSEWLQLMLAEIARKREDLERARAEEAQRLRERA
Ga0066669_101700532	3300018482	Grasslands Soil	MSDWLQLMLAEIARKREELERARAEEAQRLEESEAVRRHGERGAARASD
Ga0066669_106005712	3300018482	Grasslands Soil	VTALSEWLQLMLAEIARKREDLERARAEEAQRQREEDARQRTEPGAAENPTAR
Ga0193756_10173892	3300019866	Soil	LTALSEWLQLMLAEIARKREELERARAEEAQRLTESEAARQRAD
Ga0193733_10015293	3300020022	Soil	LTPLSEWLQLMLAEIARKREELERARAEEAQRLTESEAARQRAE
Ga0193733_10327112	3300020022	Soil	MALSEWLQLMLAEIARKREDLERARAEEAQRLTESEAARQRAEQGAAENPTTR
Ga0179594_100173562	3300020170	Vadose Zone Soil	LTALSEWLQLMLAEIARKREELERARAEEAQRLTESEAVRQRAE
Ga0210407_103024522	3300020579	Soil	MALSEWLQLMLAEIARKREDLERARAEEAQRLTETDAARQRAEPGAAENPTTR
Ga0210407_106114881	3300020579	Soil	LRALSEWLQLMLAEIVRKREELERARAEEAQRLTESEAARQRAE
Ga0179596_100154144	3300021086	Vadose Zone Soil	LTALSEWLQLMLAEIARKREELERARAEEAQRLTESEA
Ga0179596_103219342	3300021086	Vadose Zone Soil	LTALSEWLQLMLAEIARKREELERARAEEAQRLTESEAARQRAE
Ga0210405_100333363	3300021171	Soil	LTALSEWLQLMLAEIVRKREELERARAEEAQRLTESEAARQRAE
Ga0210384_103780712	3300021432	Soil	MALSEWLQLMLAEIARKREELERARAEEAQRLTESEPARQRTK
Ga0210384_109636732	3300021432	Soil	LRALSEWLQLMLAEIARKREDLERARAEEAQRLTESEAALQGAEQGAAQNPTTR
Ga0209350_100012640	3300026277	Grasslands Soil	MSDWLQLMLAEIARKREELERARAEEAQRLKESEAARRHGEPGAARASD
Ga0209350_10007235	3300026277	Grasslands Soil	VTALSEWLQLMLAEIARKREDLARARAEEAQRLREEGARQRSEPGAARNPTTR
Ga0209234_11971632	3300026295	Grasslands Soil	VTALSEWLQLMLAEIARKREDLERARAEEAQRLREEGARRSEPGAAENPTTR
Ga0209234_12598372	3300026295	Grasslands Soil	ARKREELERARAEEAQRLKESEAARRHGEPGAARASD
Ga0209238_10565522	3300026301	Grasslands Soil	VTALSEWLQLMLAEIARKREDLERARAEQAQRLRESAGELPRAGQERPRI
Ga0209469_10364142	3300026307	Soil	VTALSEWLQLMLAEIARKREDLERARAEEAQRLRESAGAQPRAGQEAAENPTTR
Ga0209055_100011420	3300026309	Soil	MSDWLQLMLAEIARKREELERARAEEAQRLKESEATRRHGEPGAARASD
Ga0209055_10090317	3300026309	Soil	VTALSEWLQLMLAEIARKREDVERARAEEAQRLREEGARQRSEPGAARNPTTR
Ga0209239_100142711	3300026310	Grasslands Soil	CAVTALSEWLQLMLAEIARKREDLERARAEEAQRLREEGARRSEPGAAENPTTR
Ga0209153_10016455	3300026312	Soil	VTAMSDWLQLMLAEIARKREELERARAEEAQRLKESEAARRHGEPGAARASD
Ga0209153_10119842	3300026312	Soil	VTALSEWLQLMLAEIARKREDLERARAEEAQRLREEGARQRGAPGAARNPTTR
Ga0209686_100038916	3300026315	Soil	MLAEIARKREELERARAEEAQRLKESEATRRHGEPGAARASD
Ga0209802_10792652	3300026328	Soil	AEIARKREELERARAEEAQRLKESEAARRHGEPGAARASD
Ga0209473_10018823	3300026330	Soil	MSDWLQLMLAEIARKREELERARAEEAQRLEESEAARRYGEPGAARASD
Ga0209377_12417861	3300026334	Soil	VTAMSDWLQLMLAEIARKREELERARAEEAQRLEES
Ga0209057_11020612	3300026342	Soil	VTAMSDWLQLMLAEIARKREELERARAEEAQRLKESEAARRHG
Ga0257176_10041591	3300026361	Soil	LTALSEWLQLMLAEIARKRQDLERARAEEAQRLTESEATRQRAEPGAPENLTTR
Ga0257167_10564122	3300026376	Soil	LTALSEWLQLMLAEIARKREELERARAEEAQRLTESEAARRRAE
Ga0257158_10641191	3300026515	Soil	VTALSEWLQLMLAEIARKREELERARAEEAQRLTESEAARQR
Ga0209806_10023082	3300026529	Soil	MSDWLQLMLAEIARKREELERAGAEEAQRLKESEAARRHGEPGAARASD
Ga0209376_10275992	3300026540	Soil	VTAMSDWLQLMLAEIARKREELERARAEEAQRLEESEAARRYGEPGAARASD
Ga0209648_103181562	3300026551	Grasslands Soil	LTALSEWLQLMLAEIARKREDLERARAEEAQRLRESEAARQHAEPGAAENLTTR
Ga0179587_104251951	3300026557	Vadose Zone Soil	LTALSEWLQLMLAEIARKREELERARAEEAQRLTESEAARSAP
Ga0208983_10203402	3300027381	Forest Soil	LTALSEWLQLMLAEIARKREDLERARAEEAQRLTESEAARQRAE
Ga0208993_10592341	3300027480	Forest Soil	VTALSEWLQLMLAEIARKREELERARAEEAQRLTESEAARQ
Ga0209179_11392372	3300027512	Vadose Zone Soil	MLAEIARKREDLERARAEEAQRLREREGAQPRTEQGAAQNPNAR
Ga0209734_10000388	3300027535	Forest Soil	LTALSEWLQLMLAEIARKREELERARAEEARRLTESEAARQRGAQGAAENPTTRDTLC
Ga0209523_10252372	3300027548	Forest Soil	VTAMSEWLQLMLAEIARKREELERARAEEAQRLRESEAARRHGEQGAPENLNNR
Ga0209220_10079662	3300027587	Forest Soil	LTALSEWLQLMLAEIARKREDLERARAEEARRLTESEAARQRGEQGAAENPTTRDTLC
Ga0209733_10004052	3300027591	Forest Soil	MAPSEWLQLMLAEIARKREELERARAEEAQRLTESEAARQRAEQGAAENLTTR
Ga0209329_10164122	3300027605	Forest Soil	LTALSEWLQLMLAEIARKREELERGRAEEAQRLTESEAARQRAE
Ga0209528_10066842	3300027610	Forest Soil	MALSEWLQLMLAEIARKREDLERARAEEAQRLTESEAARQRAEQGPRI
Ga0209106_11517182	3300027616	Forest Soil	MALSEWLQLMLAEIARKREDLERARAEAAQRLTESEAARQRAEQAAAENPTTR
Ga0209117_10638572	3300027645	Forest Soil	LTALSEWLQLMLAEIARKREELERARAEEAQRLTESEAARQRAEQGAAENPTTR
Ga0208981_10439131	3300027669	Forest Soil	LTPLSEWLQLMLAEIARKREELERARAEEAQRLTESEAVRQRAE
Ga0209068_102634292	3300027894	Watersheds	LTALSEWLQLMLAEIARKREDLERARAEEAQRLTESEAARQRAEQGAAENPTTR
Ga0308309_105031102	3300028906	Soil	MALSEWLQLMLAEIARKREDLERARAEEAQRLTESEAARQRAEQATAENLTTR
Ga0307474_104073202	3300031718	Hardwood Forest Soil	VTALSEWLQLMLAEIAHKREDVERARAEEAQRLREREGARPRTEQGAAENPRAR
Ga0307469_100062243	3300031720	Hardwood Forest Soil	LTALSEWLQLMLAEIARKREELERARAEEAQRLRESEAGRQRAE
Ga0307469_115403431	3300031720	Hardwood Forest Soil	VTAMSEWLQLMLAEIARKREELERARAEEAQRLRENEAARRHG
Ga0307477_100332525	3300031753	Hardwood Forest Soil	MSEWLQLMLAEIARKREELDRARAEEAQRLRENEAARRHGEQGAPENLNNR
Ga0307475_100381833	3300031754	Hardwood Forest Soil	VTAMSEWLQLMLAEIARKREELDRARAEEAQRLRENEAARRHGEQGAPENLNNR
Ga0307479_113047562	3300031962	Hardwood Forest Soil	VTALSEWLQLMLAEIAHKREDLERARAEEAQRLREREGASPRTEQGAAQNPNAR
Ga0307471_1005067702	3300032180	Hardwood Forest Soil	VTAMSEWLQLMLAEIARKREELERARAEEAQRLRENEAARRHGEQGAPENLNNR
Ga0307471_1041521032	3300032180	Hardwood Forest Soil	MALSEWLQLMLAEIARKREDLERARAEEAQRLTESDAVRQRAEQGAAENLTAR
Ga0307472_1000262193	3300032205	Hardwood Forest Soil	VTAMSEWLQLMLAEIARKREELERARAEEAQRLRENEAAQRHGEQGAPENLNNR
Ga0335080_116098011	3300032828	Soil	WLQLMLAEIAAKREAQQRARAEEAQRTAERAAGPHSGNGTAPR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F059800

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences