Metagenome / Metatranscriptome Family F059192

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F059192
Family Type	Metagenome / Metatranscriptome
Number of Sequences	134
Average Sequence Length	54 residues
Representative Sequence	MSRHSTNTASFFSILIAALIFSLSLAGVAAAQGNTSLGSGALQSNTTGINNTALGL
Number of Associated Samples	100
Number of Associated Scaffolds	134

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	97.54 %
% of genes near scaffold ends (potentially truncated)	85.07 %
% of genes from short scaffolds (< 2000 bps)	81.34 %
Associated GOLD sequencing projects	95
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (64.179 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (14.179 % of family members)
Environment Ontology (ENVO)	Unclassified (31.343 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (47.015 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 59.52% β-sheet: 0.00% Coil/Unstructured: 40.48%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.40
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.40
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 134 Family Scaffolds
PF13884	Peptidase_S74	3.73
PF02265	S1-P1_nuclease	2.99
PF04392	ABC_sub_bind	2.24
PF13472	Lipase_GDSL_2	1.49
PF09084	NMT1	1.49
PF13946	DUF4214	1.49
PF04977	DivIC	0.75
PF04366	Ysc84	0.75
PF04679	DNA_ligase_A_C	0.75
PF13560	HTH_31	0.75
PF01764	Lipase_3	0.75
PF03372	Exo_endo_phos	0.75
PF13517	FG-GAP_3	0.75
PF00589	Phage_integrase	0.75
PF11154	DUF2934	0.75
PF02586	SRAP	0.75
PF01435	Peptidase_M48	0.75
PF05050	Methyltransf_21	0.75
PF01609	DDE_Tnp_1	0.75
PF13620	CarboxypepD_reg	0.75
PF14319	Zn_Tnp_IS91	0.75
PF05598	DUF772	0.75
PF02423	OCD_Mu_crystall	0.75
PF00496	SBP_bac_5	0.75
PF00719	Pyrophosphatase	0.75
PF00072	Response_reg	0.75

COG ID	Name	Functional Category	% Frequency in 134 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	2.24
COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	1.49
COG4521	ABC-type taurine transport system, periplasmic component	Inorganic ion transport and metabolism [P]	1.49
COG0221	Inorganic pyrophosphatase	Energy production and conversion [C]	0.75
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.75
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	0.75
COG2423	Ornithine cyclodeaminase/archaeal alanine dehydrogenase, mu-crystallin family	Amino acid transport and metabolism [E]	0.75
COG2919	Cell division protein FtsB	Cell cycle control, cell division, chromosome partitioning [D]	0.75
COG2930	Lipid-binding SYLF domain, Ysc84/FYVE family	Lipid transport and metabolism [I]	0.75
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.75
COG3293	Transposase	Mobilome: prophages, transposons [X]	0.75
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	0.75
COG4839	Cell division protein FtsL	Cell cycle control, cell division, chromosome partitioning [D]	0.75
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.75
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.75
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.75

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.18 %
All Organisms	root	All Organisms	35.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.18 %
cellular organisms	root	All Organisms → cellular organisms	35.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.18 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	35.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.18 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	9.70 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	2.99 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.49 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	1.49 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	1.49 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.49 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.18 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	5.97 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.99 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	2.99 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.49 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	1.49 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.75 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.75 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.75 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.75 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.18 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	5.97 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	1.49 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1.49 %
Patescibacteria group	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group	1.49 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1.49 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.49 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.75 %
Methylococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales	0.75 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.75 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.75 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.75 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.18 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	5.97 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.49 %
Chitinophagia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia	1.49 %
Microgenomates group	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group	1.49 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	0.75 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.75 %
Planctomycetales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales	0.75 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.75 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.75 %
Pleurocapsales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pleurocapsales	0.75 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.75 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.18 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	5.97 %
Chitinophagales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales	1.49 %
Candidatus Amesbacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Amesbacteria	1.49 %
Planctomycetaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae	0.75 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.75 %
Dermocarpellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pleurocapsales → Dermocarpellaceae	0.75 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.75 %
Caenibius	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Caenibius	0.75 %
Pseudorhodobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Pseudorhodobacter	0.75 %
Acidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	0.75 %
Terracidiphilus	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terracidiphilus	0.75 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.75 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.18 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	5.97 %
Candidatus Amesbacteria bacterium GW2011_GWB1_48_13	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Amesbacteria → Candidatus Amesbacteria bacterium GW2011_GWB1_48_13	1.49 %
Chitinophagaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae	1.49 %
unclassified Acidobacterium	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium	0.75 %
Caenibius tardaugens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Caenibius → Caenibius tardaugens	0.75 %
Pseudorhodobacter ferrugineus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Pseudorhodobacter → Pseudorhodobacter ferrugineus	0.75 %
unclassified Planctomycetaceae	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae	0.75 %
Terracidiphilus gabretensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terracidiphilus → Terracidiphilus gabretensis	0.75 %
Stanieria	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pleurocapsales → Dermocarpellaceae → Stanieria	0.75 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.75 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.75 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.75 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.18 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	5.97 %
Segetibacter	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Segetibacter	1.49 %
Candidatus Amesbacteria bacterium GW2011_GWB1_48_13	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Amesbacteria → Candidatus Amesbacteria bacterium GW2011_GWB1_48_13	1.49 %
Acidobacterium sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	0.75 %
Planctomycetaceae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	0.75 %
unclassified Stanieria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pleurocapsales → Dermocarpellaceae → Stanieria → unclassified Stanieria	0.75 %
Caenibius tardaugens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Caenibius → Caenibius tardaugens	0.75 %
Pseudorhodobacter ferrugineus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Pseudorhodobacter → Pseudorhodobacter ferrugineus	0.75 %
Terracidiphilus gabretensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terracidiphilus → Terracidiphilus gabretensis	0.75 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.75 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.75 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.75 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.18 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	5.97 %
Segetibacter koreensis	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Segetibacter → Segetibacter koreensis	1.49 %
Candidatus Amesbacteria bacterium GW2011_GWB1_48_13	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Amesbacteria → Candidatus Amesbacteria bacterium GW2011_GWB1_48_13	1.49 %
Stanieria sp. NIES-3757	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pleurocapsales → Dermocarpellaceae → Stanieria → unclassified Stanieria → Stanieria sp. NIES-3757	0.75 %
Acidobacterium sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	0.75 %
Planctomycetaceae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	0.75 %
Caenibius tardaugens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Caenibius → Caenibius tardaugens	0.75 %
Pseudorhodobacter ferrugineus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Pseudorhodobacter → Pseudorhodobacter ferrugineus	0.75 %
Terracidiphilus gabretensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terracidiphilus → Terracidiphilus gabretensis	0.75 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.75 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.75 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.75 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.75 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2209111006\|2214887723	All Organisms → cellular organisms → Bacteria	571	Open in IMG/M
3300000596\|KanNP_Total_noBrdU_T14TCDRAFT_1002188	All Organisms → cellular organisms → Bacteria	2312	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10122744	Not Available	543	Open in IMG/M
3300000955\|JGI1027J12803_107542056	Not Available	512	Open in IMG/M
3300001431\|F14TB_100599605	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1069	Open in IMG/M
3300002099\|JGI24808J26613_1037102	Not Available	682	Open in IMG/M
3300002899\|JGIcombinedJ43975_10058371	All Organisms → cellular organisms → Bacteria	660	Open in IMG/M
3300003911\|JGI25405J52794_10144383	Not Available	541	Open in IMG/M
3300004114\|Ga0062593_103108860	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Segetibacter → Segetibacter koreensis	531	Open in IMG/M
3300004268\|Ga0066398_10120465	Not Available	630	Open in IMG/M
3300004268\|Ga0066398_10125860	Not Available	621	Open in IMG/M
3300004479\|Ga0062595_100719956	Not Available	805	Open in IMG/M
3300005277\|Ga0065716_1006017	All Organisms → cellular organisms → Bacteria	836	Open in IMG/M
3300005293\|Ga0065715_10173830	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Amesbacteria → Candidatus Amesbacteria bacterium GW2011_GWB1_48_13	1527	Open in IMG/M
3300005294\|Ga0065705_10436595	All Organisms → cellular organisms → Bacteria	839	Open in IMG/M
3300005294\|Ga0065705_10947852	Not Available	562	Open in IMG/M
3300005295\|Ga0065707_10164183	All Organisms → cellular organisms → Bacteria	1524	Open in IMG/M
3300005295\|Ga0065707_10211811	All Organisms → cellular organisms → Bacteria	1260	Open in IMG/M
3300005332\|Ga0066388_100408077	All Organisms → cellular organisms → Bacteria	2003	Open in IMG/M
3300005332\|Ga0066388_105641727	Not Available	633	Open in IMG/M
3300005332\|Ga0066388_108203341	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Caenibius → Caenibius tardaugens	521	Open in IMG/M
3300005354\|Ga0070675_102047679	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	528	Open in IMG/M
3300005355\|Ga0070671_101410440	Not Available	615	Open in IMG/M
3300005356\|Ga0070674_101508275	Not Available	604	Open in IMG/M
3300005457\|Ga0070662_100642811	All Organisms → cellular organisms → Bacteria	894	Open in IMG/M
3300005507\|Ga0074259_10111176	Not Available	522	Open in IMG/M
3300005549\|Ga0070704_102053733	Not Available	531	Open in IMG/M
3300005713\|Ga0066905_100034546	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terracidiphilus → Terracidiphilus gabretensis	2918	Open in IMG/M
3300005713\|Ga0066905_100686488	Not Available	877	Open in IMG/M
3300005713\|Ga0066905_100756976	Not Available	839	Open in IMG/M
3300005713\|Ga0066905_100992974	Not Available	740	Open in IMG/M
3300005713\|Ga0066905_101377865	Not Available	637	Open in IMG/M
3300005764\|Ga0066903_100925950	All Organisms → cellular organisms → Bacteria	1581	Open in IMG/M
3300005764\|Ga0066903_101800910	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	1170	Open in IMG/M
3300005764\|Ga0066903_104728493	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Segetibacter → Segetibacter koreensis	725	Open in IMG/M
3300005764\|Ga0066903_106050412	Not Available	633	Open in IMG/M
3300006049\|Ga0075417_10030122	All Organisms → cellular organisms → Bacteria	2243	Open in IMG/M
3300006175\|Ga0070712_101366396	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	618	Open in IMG/M
3300006845\|Ga0075421_100274970	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	2056	Open in IMG/M
3300006845\|Ga0075421_101295495	Not Available	807	Open in IMG/M
3300006871\|Ga0075434_101869671	Not Available	607	Open in IMG/M
3300006881\|Ga0068865_100100898	All Organisms → cellular organisms → Bacteria	2113	Open in IMG/M
3300006903\|Ga0075426_10130584	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1809	Open in IMG/M
3300006904\|Ga0075424_101540238	Not Available	705	Open in IMG/M
3300006914\|Ga0075436_100076349	All Organisms → cellular organisms → Bacteria	2320	Open in IMG/M
3300007076\|Ga0075435_101280180	Not Available	642	Open in IMG/M
3300009094\|Ga0111539_12291606	Not Available	627	Open in IMG/M
3300009147\|Ga0114129_11204115	Not Available	943	Open in IMG/M
3300009147\|Ga0114129_12237841	All Organisms → cellular organisms → Bacteria	657	Open in IMG/M
3300009147\|Ga0114129_12967279	Not Available	559	Open in IMG/M
3300009162\|Ga0075423_10696949	Not Available	1072	Open in IMG/M
3300009168\|Ga0105104_10067178	All Organisms → cellular organisms → Bacteria	1939	Open in IMG/M
3300009792\|Ga0126374_10486090	Not Available	886	Open in IMG/M
3300010043\|Ga0126380_11101098	Not Available	677	Open in IMG/M
3300010046\|Ga0126384_11241593	Not Available	689	Open in IMG/M
3300010047\|Ga0126382_11206667	Not Available	678	Open in IMG/M
3300010047\|Ga0126382_12239177	Not Available	527	Open in IMG/M
3300010154\|Ga0127503_10484965	Not Available	761	Open in IMG/M
3300010358\|Ga0126370_10535726	Not Available	997	Open in IMG/M
3300010358\|Ga0126370_12275958	Not Available	536	Open in IMG/M
3300010359\|Ga0126376_10021791	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	4201	Open in IMG/M
3300010360\|Ga0126372_10614377	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1046	Open in IMG/M
3300010361\|Ga0126378_12366594	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
3300010361\|Ga0126378_13252321	Not Available	517	Open in IMG/M
3300010362\|Ga0126377_10097494	All Organisms → cellular organisms → Bacteria	2675	Open in IMG/M
3300010362\|Ga0126377_10690552	All Organisms → cellular organisms → Bacteria	1073	Open in IMG/M
3300010362\|Ga0126377_13305391	Not Available	521	Open in IMG/M
3300010403\|Ga0134123_10391317	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1271	Open in IMG/M
3300012202\|Ga0137363_10999466	Not Available	710	Open in IMG/M
3300012485\|Ga0157325_1009590	Not Available	695	Open in IMG/M
3300012514\|Ga0157330_1062124	Not Available	558	Open in IMG/M
3300012922\|Ga0137394_10581868	Not Available	948	Open in IMG/M
3300012948\|Ga0126375_10597413	Not Available	842	Open in IMG/M
3300012957\|Ga0164303_11224656	Not Available	551	Open in IMG/M
3300012961\|Ga0164302_11128972	All Organisms → cellular organisms → Bacteria	621	Open in IMG/M
3300012971\|Ga0126369_10132965	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2311	Open in IMG/M
3300012971\|Ga0126369_10163549	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2108	Open in IMG/M
3300013306\|Ga0163162_10612588	Not Available	1214	Open in IMG/M
3300015371\|Ga0132258_11800368	All Organisms → cellular organisms → Bacteria	1543	Open in IMG/M
3300015372\|Ga0132256_101571000	Not Available	768	Open in IMG/M
3300015372\|Ga0132256_103269165	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	545	Open in IMG/M
3300015373\|Ga0132257_100085564	All Organisms → cellular organisms → Bacteria	3598	Open in IMG/M
3300015373\|Ga0132257_101420101	Not Available	884	Open in IMG/M
3300016294\|Ga0182041_10751124	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	868	Open in IMG/M
3300016341\|Ga0182035_12042443	Not Available	521	Open in IMG/M
3300016357\|Ga0182032_11988346	Not Available	510	Open in IMG/M
3300016371\|Ga0182034_10656069	Not Available	889	Open in IMG/M
3300016371\|Ga0182034_11694094	Not Available	556	Open in IMG/M
3300016404\|Ga0182037_10579232	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	950	Open in IMG/M
3300017792\|Ga0163161_11402632	Not Available	610	Open in IMG/M
3300017936\|Ga0187821_10283840	Not Available	654	Open in IMG/M
3300018031\|Ga0184634_10412179	Not Available	615	Open in IMG/M
3300018067\|Ga0184611_1140488	Not Available	853	Open in IMG/M
3300018073\|Ga0184624_10052190	Not Available	1658	Open in IMG/M
3300018081\|Ga0184625_10006240	All Organisms → cellular organisms → Bacteria	5355	Open in IMG/M
3300021560\|Ga0126371_13459574	Not Available	533	Open in IMG/M
3300022756\|Ga0222622_11187088	Not Available	562	Open in IMG/M
3300025930\|Ga0207701_10266903	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1491	Open in IMG/M
3300025930\|Ga0207701_11566213	Not Available	531	Open in IMG/M
3300025930\|Ga0207701_11721785	Not Available	501	Open in IMG/M
3300025932\|Ga0207690_11781629	Not Available	514	Open in IMG/M
3300025938\|Ga0207704_11487113	Not Available	581	Open in IMG/M
3300025972\|Ga0207668_10377317	All Organisms → cellular organisms → Bacteria	1193	Open in IMG/M
3300027775\|Ga0209177_10284628	Not Available	624	Open in IMG/M
3300028587\|Ga0247828_10771084	Not Available	607	Open in IMG/M
3300031170\|Ga0307498_10065359	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Pseudorhodobacter → Pseudorhodobacter ferrugineus	1031	Open in IMG/M
3300031231\|Ga0170824_117564759	Not Available	599	Open in IMG/M
3300031720\|Ga0307469_10235055	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1461	Open in IMG/M
3300031740\|Ga0307468_100679647	Not Available	856	Open in IMG/M
3300031820\|Ga0307473_10892810	Not Available	641	Open in IMG/M
3300031858\|Ga0310892_10479664	Not Available	824	Open in IMG/M
3300031858\|Ga0310892_10655682	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pleurocapsales → Dermocarpellaceae → Stanieria → unclassified Stanieria → Stanieria sp. NIES-3757	716	Open in IMG/M
3300031941\|Ga0310912_11069372	Not Available	617	Open in IMG/M
3300031947\|Ga0310909_11453438	Not Available	547	Open in IMG/M
3300032013\|Ga0310906_11012269	Not Available	598	Open in IMG/M
3300032017\|Ga0310899_10729944	Not Available	505	Open in IMG/M
3300032122\|Ga0310895_10601113	Not Available	564	Open in IMG/M
3300032180\|Ga0307471_101318242	Not Available	884	Open in IMG/M
3300032205\|Ga0307472_102208017	Not Available	555	Open in IMG/M
3300032261\|Ga0306920_101098336	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	1154	Open in IMG/M
3300033289\|Ga0310914_10583523	Not Available	1009	Open in IMG/M
3300033412\|Ga0310810_10760237	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Microgenomates group → Candidatus Amesbacteria → Candidatus Amesbacteria bacterium GW2011_GWB1_48_13	886	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	74.63%
Host-Associated	Host-Associated	25.37%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	68.66%
Plants	Host-Associated → Plants	25.37%
Aquatic	Environmental → Aquatic	5.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	68.66%
Rhizosphere	Host-Associated → Plants → Rhizosphere	15.67%
Rhizoplane	Host-Associated → Plants → Rhizoplane	9.70%
Sediment	Environmental → Aquatic → Sediment	3.73%
Freshwater	Environmental → Aquatic → Freshwater	2.24%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	52.24%
Loam	Environmental → Terrestrial → Soil → Loam	16.42%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.70%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	5.22%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.48%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.73%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.75%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.75%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.63%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	17.16%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	12.69%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.70%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	5.22%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.48%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.48%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.73%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.73%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.24%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.24%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.49%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.75%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.75%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.75%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	14.18%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	12.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.70%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	9.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.48%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	4.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.73%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.73%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.99%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	2.99%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	2.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.24%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.49%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.49%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.49%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.49%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.49%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.49%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.49%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.49%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.49%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.49%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.49%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.49%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.75%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.75%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.75%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.75%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.75%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.75%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.75%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.75%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.75%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2209111006	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample Wild type Col-0	Host-Associated	Open in IMG/M
3300000596	Amended soil microbial communities from Kansas Great Prairies, USA - Total DNA no BrdU F1.4TC	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300002099	Soil microbial communities from Manhattan, Kansas, USA - Sample 400um MDA	Environmental	Open in IMG/M
3300002899	Soil microbial communities from Manhattan, Kansas, USA - Combined assembly of Kansas soil 100-500um Nextera (ASSEMBLY_DATE=20140607)	Environmental	Open in IMG/M
3300003911	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005277	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample Wild type Col-0	Host-Associated	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005507	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample Mutant cpr5	Host-Associated	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012485	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.7.old.040610	Host-Associated	Open in IMG/M
3300012514	Unplanted soil (control) microbial communities from North Carolina - M.Soil.1.old.130510	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017936	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032017	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
2213941541	2209111006	Arabidopsis Rhizosphere	MLRKINAASFLSVLIAELIYSFLLTGFAAAQNNTSFGTGALQNNTTGKFNTATGF
KanNP_Total_noBrdU_T14TCDRAFT_10021885	3300000596	Soil	MFNQSTNTASFFSILIALLRIFSLSLAGVATVQGNTSLGIGALQNNTTGS
AF_2010_repII_A001DRAFT_101227442	3300000793	Forest Soil	MYRNSTNTASFFAVLTAFIFSLFLAGVAAAQSNTSLGTGALVSNTTGINNTALGLNELATAQAAPTLPPGSVHS
JGI1027J12803_1075420562	3300000955	Soil	MFRHSTNTGSFFSVLIAALIFSLSLAGVAAAQQGNTSLGIGALQNNTTGSFNTATGN
F14TB_1005996052	3300001431	Soil	MFXXXXARFFSVLIVALIFSLSLAGVAAAQTNTSLGTNALVSNTTG
JGI24808J26613_10371021	3300002099	Soil	MFRNSTNTTSFFSVLMVALIFSLSLAGAAAAQTNTSLGTGALQSNTGGINNTAI
JGIcombinedJ43975_100583712	3300002899	Soil	MLRNSANTTSFYLMVILTAVLFAGLAAAQSNTSLGTGALVSNTTGFSN
JGI25405J52794_101443831	3300003911	Tabebuia Heterophylla Rhizosphere	MVRHSTHTASLFSVLLAVLIVSLSLAGGAAAQANDNTRLGTGVLRNNT
Ga0062593_1031088601	3300004114	Soil	MLRNSTNTASFFFLIVMLIFSLSLARLAAAQTNTSLGTGALVSNTTGSQNTAIGFN
Ga0066398_101204652	3300004268	Tropical Forest Soil	MFTHSTNTASFFSVLMAALIYSLCLAGVAWAQGNTSLGINALGTNTTGSFNT
Ga0066398_101258602	3300004268	Tropical Forest Soil	MFRDSTNTALSFFVLMVALIFLLSLTRVAAAQTNTSLGTNALVSNSTGSFNTGIGFDALV
Ga0062595_1007199562	3300004479	Soil	MSRHSSNTASSFFIFTAAPLFLLSLTGVAAAQGNTSLGTGALVSNATGSNNTALGVSALFSNTG
Ga0065716_10060171	3300005277	Arabidopsis Rhizosphere	MLRKINAASFLSVLIAELIYSFLLTGFAAAQNNTSFGTGALQNNTTGKFNTATGFV
Ga0065715_101738305	3300005293	Miscanthus Rhizosphere	MFRNSTNAASFFYMLIVAIIFSLSLVRLAAAQTNTSSGTGALVSNTTGSDNTALGAMR*
Ga0065705_104365952	3300005294	Switchgrass Rhizosphere	MSRHSTNTASFFSILIAALIFSLSLAGVAAAQGNTSLGSGALQSNTTGINNTALGL
Ga0065705_109478522	3300005294	Switchgrass Rhizosphere	MVRHSTTSASRCSVLMAALIVSLSLAGVAAAQDNTNTSLGTGALENNT
Ga0065707_101641834	3300005295	Switchgrass Rhizosphere	MFNQPTNTASFFSILIAALIFSLSLAGVATAQGNTSLGIGALQNNTTGS
Ga0065707_102118113	3300005295	Switchgrass Rhizosphere	FYMFSHSINPASFFSMLMAALIFSLSLAGVAAAQGNTSLGTGAFQNNTTGSFNTAIGLQALFR*
Ga0066388_1004080773	3300005332	Tropical Forest Soil	MLCNLTNTASSFFVVMAALLFLLSLAGVAAAQSNTNLGSGALVNNTTGLNNTAIGGNG
Ga0066388_1013307751	3300005332	Tropical Forest Soil	MLRNSTNAASFYIRLVTTFIFSLSFAAIAAAQSNTSLGTGALVSNTTGSANTAVGVSALFSN
Ga0066388_1056417272	3300005332	Tropical Forest Soil	MLRNSTNTASFFFFLIATLIFSLSLASVAAAQSNTSVGLGALGSNTTGSNNTAVGEG
Ga0066388_1082033411	3300005332	Tropical Forest Soil	MCTHSTNTASLFSVLVGALIFSLFLSGVAAAQTNTSLGTAALQNNSTGDYNTASGFVA
Ga0070675_1020476791	3300005354	Miscanthus Rhizosphere	MFGHSTHPASFFSVLMAALILSLSLVGVAAAQTNTSLGTNALVSNTTGNNNTAV
Ga0070671_1014104402	3300005355	Switchgrass Rhizosphere	MRHNSTSTAWFCSILISGLIYLLSLPGIAAAQSNTSLGTGALVSNTTGS
Ga0070674_1015082751	3300005356	Miscanthus Rhizosphere	MFRNSTNAASFFYMLIVAIIFSLSLVRLAAAQTNTSPGTGALQTNTTGDNNTAIGS
Ga0070662_1006428113	3300005457	Corn Rhizosphere	MFRHSTNTASFFSVLMISLICSLSLAAIAAAQTNTSLGTNAFVSNTTGINNTAIGFQTLFSN
Ga0074259_101111762	3300005507	Arabidopsis Rhizosphere	MFRHSNNTASFLSVLIAALIFLLSLAEVAAAQGNTSLGTGALQNNTTGSFNTAI
Ga0070679_1010555111	3300005530	Corn Rhizosphere	MLRNSTNKASAFTILIAALLFSVSLAGVAAAQSNTSLGTSALVSNTTGSNN
Ga0070704_1020537332	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MFRHSTNTASFFSVLTVALILSLSLVGVAAAQTNTSLGTNALVSNTTGT
Ga0066905_1000345461	3300005713	Tropical Forest Soil	MFSHSNTASFFCILTVALIFSLGQAGVAAAQGNTSLGTGALQSNTTGSFNTAAGVNALFS
Ga0066905_1006864882	3300005713	Tropical Forest Soil	MLRHSTNTASFFSALITALIFLLFLAGVAAAQTNTSLGTGALINNTTG
Ga0066905_1007569761	3300005713	Tropical Forest Soil	MFRHSTNSTSFFSILIAVIFSLSLAGIAAAQGNTSLGSGALQNNTTGSFNTA
Ga0066905_1009929741	3300005713	Tropical Forest Soil	MFCYSSNAASLFSVVVAALIFSFSLAGVAAAQGNTSLGTGALQNNTTG
Ga0066905_1013778651	3300005713	Tropical Forest Soil	MFSHLNHSTNTAWFFSVLIAALVFSLSMAEVAAAQTNTSLGAGALQSNT
Ga0066903_1006603331	3300005764	Tropical Forest Soil	MLRNLTTTSIFVLVAALLFPLSLAGIATAQSNTSLGTGALVSN
Ga0066903_1009259502	3300005764	Tropical Forest Soil	MYRNSTNTASFFSVLTVFIFLLFLVGVAAAQTNTSLGTGALVSNTTGINNTALGLNALATFR*
Ga0066903_1018009101	3300005764	Tropical Forest Soil	MLRRSNNTASFFSILMAALIFSLCLAGVAAAQVNNTSLGTAALQNNTAGSFNTASGF
Ga0066903_1019352981	3300005764	Tropical Forest Soil	MLRNSTNAASFYIKLITTFIFSLSFAAIAAAQSNTSLGTGALVSNTTGSANTAVGVSALF
Ga0066903_1047284931	3300005764	Tropical Forest Soil	MMHNSTKTASFFLIVTASVIFSLSLVGVAAAQSNTSLGLGALASNTTGSNNTAV
Ga0066903_1060504123	3300005764	Tropical Forest Soil	MIRHSPHTASLFSALMAAFIVSLSLAGGAAAQNTSLGTGALQSNTT
Ga0075417_100301224	3300006049	Populus Rhizosphere	MFQHSSNTASFFSVLIVALIFSLGLAGIAAAQGNTSLGTGALQNNTTGSYNTPEY*
Ga0070712_1013663962	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MHRHSTHTASFFSVLIVALIFSLCLAGVAAAQGNTSLGTGALQNNTTGSQNTAIGVD
Ga0075421_1002749701	3300006845	Populus Rhizosphere	MFHHSTNTASFFSGLIAALIFSLSLAGIAVAQSNTSLGTGALTSNTTGANNTATGLNT
Ga0075421_1012954952	3300006845	Populus Rhizosphere	MHRHSSNTASFFSVLIAALFLSLSLAEVAAAQGNTSLGTGALQSNTTGSFNTASG
Ga0075434_1018696711	3300006871	Populus Rhizosphere	MLSHSTTASFFSGFIAALIFSLSLAGGAAAQGNTSLGIGALQNNTTGSFNTATG
Ga0068865_1001008983	3300006881	Miscanthus Rhizosphere	MFSHSTNTSSFFAVLIAGLIFSLSLAGVTAAQNNNTSLGTGALQSNT
Ga0075426_101305841	3300006903	Populus Rhizosphere	LVEVGIYISHSTNTASFFAILMAALIYSLSLAGVAAAQGNTSLGTGALQNNTTRSFNT
Ga0075424_1015402382	3300006904	Populus Rhizosphere	MLRNSANTTSFYLMVILTVVLFAGLAAAQSNTSLGTGALVSNTTGFSNTALGFGTLSRN
Ga0075436_1000763494	3300006914	Populus Rhizosphere	LVEVGIYISHSTNTASFFAILMAAVIFSLSLAGVAAAQGNTSLGTGALQNNTTRSFNTASGVGA
Ga0075435_1012801801	3300007076	Populus Rhizosphere	MFRHSTNTASFLSVVIAVLMFSLCLAGVAAAQQDNTSLGTGALFSNTT
Ga0111539_122916062	3300009094	Populus Rhizosphere	MFRHSTNTASFLSVLIAALIFLLSLAEVAAAQGNTSLGTGALQNNTTG
Ga0114129_112041152	3300009147	Populus Rhizosphere	MVRHAPHTAALFSVLLAALMVSLSLAGGAAAQSNTSLGAGALQNNTTGGFN
Ga0114129_122378411	3300009147	Populus Rhizosphere	MFSHSTNTGSFFSILIAAVIFSLSLAGVAAAQGNTSLGANALATNTTGNFNTAIGLN
Ga0114129_129672791	3300009147	Populus Rhizosphere	MIRYYTNTTSFFSVLIAALILLLSLVGVTAAQTNTSLGTSALQNNTTGSFNTAI
Ga0075423_106969491	3300009162	Populus Rhizosphere	MLRNLINPVPFFSAIIVALIFSLSLAGIAGAQTNTSLGTSALVNNTTGSNNTAVGFSALF
Ga0105104_100671781	3300009168	Freshwater Sediment	MFSHSTNTALFFSVLMAALIFSLSLAGVAAAQGNTSLGINALGTNTTGNFNTAIGLNALF
Ga0126374_104860901	3300009792	Tropical Forest Soil	MVRHSTITASLFSVFLAALMCSLSLAGGAAAQENTKLGAGALQ
Ga0126380_111010981	3300010043	Tropical Forest Soil	MSTHSTNTASFFSILIGALIFSLSLAGVAAAQVANTRLGVLALQNNTT
Ga0126384_112415932	3300010046	Tropical Forest Soil	MFSHSSNTASFFSILIAALIFSLALAGLAAAQGNTSLGTGALQNNTTGSNNTAIGEDALF
Ga0126382_112066673	3300010047	Tropical Forest Soil	MFNHSTNTASLFSILIAALIYSLPLAGVAVAQSNTILGSGALVSNTTG
Ga0126382_122391772	3300010047	Tropical Forest Soil	MFQHSTNAASCFSVLIVALIFSLALAGVAVAQGNTSLGTGALRNNTTGSFNT
Ga0127503_104849652	3300010154	Soil	MFRHSTHTASFFSVLIAALIFSLSLAGVAAAQTNTSLGTGALQNNYGQLQ
Ga0126370_105357261	3300010358	Tropical Forest Soil	MFSRSTHTASFFSILIAIIFSLCLAGVAAAQVNNTSLGTGALQNNTMGSFNTASGFV
Ga0126370_122759582	3300010358	Tropical Forest Soil	MFQHSTNAASCFSVLIVALIYSLSLAGVASAQTGNTSLGTGALVNNTKGMDNTAIGL
Ga0126376_100217911	3300010359	Tropical Forest Soil	MFSHSNTARFFCVLIAALIYSLSLAGVASAQTGNTSLGTGALVNNTIDNT
Ga0126372_106143771	3300010360	Tropical Forest Soil	MLRRSTNTASFFSILMAALIFSLSLATIAAAQGNTSLGTGALVNNTTGSFNAAIGFDA
Ga0126378_123665941	3300010361	Tropical Forest Soil	NSTNTASFFSVLTAFVFSLFLAGVAAAQSNTSLGTGALVGNTTGINNTALGLNALATFR*
Ga0126378_132523212	3300010361	Tropical Forest Soil	MFRHSANTASFFSILMAAVIFSLCLAGVAAAQVNNTSLGTAALQNNTTGSFNTAS
Ga0126377_100974947	3300010362	Tropical Forest Soil	MFSHLNHSTNTAWFFSVLIAALVFSLSMAEVAAAQTNTSLGAGALQSNTTGSLNTAIGFVAL*
Ga0126377_106905522	3300010362	Tropical Forest Soil	MFSHSTNTASFFSVLIATLIYFLSLPGFAAGQTNTSLGSGALVNNTTG
Ga0126377_133053912	3300010362	Tropical Forest Soil	MFGQSTKTDLFFSILIATFSYSLLLAGIAAAQSNTSLGTGALVSNTT
Ga0126381_1010887551	3300010376	Tropical Forest Soil	MFRHSANTASFFSILMAAVIFSLCLAGVAAAQVNNTSLGTAALQNNT
Ga0134123_103913172	3300010403	Terrestrial Soil	MFRHSTNTASFLSVVIAALIFWLSLAGVAAAQDNTSLGTGALFSNTTGGFNTAIGSNALT
Ga0137363_109994662	3300012202	Vadose Zone Soil	MFRHSTNTASFFFVLIAALIFSLSLAGVAAAQTGNTNLGTGALQNNTTGSFNTA
Ga0157325_10095901	3300012485	Arabidopsis Rhizosphere	MFRHSTNTASFLSVVIAALISWLSLAGVAAAQDNTSLGTNALISNTTGGFNTAI
Ga0157330_10621241	3300012514	Soil	MLRHSTNTASFLSVVIAVLMFWLSLAGVAAAQGNTSLGTGALQNNTTGSFNTATGSNALTDNTT
Ga0137394_105818681	3300012922	Vadose Zone Soil	MFCHSTNTASFFSVLIAALIFSLSLARVAAAQGNTSLGTRTLQSNTT
Ga0126375_105974131	3300012948	Tropical Forest Soil	MFRHSTNTASFIPALMAALIFSLSLAGVAAAQTNTSLGTGALQSNTT
Ga0164303_112246561	3300012957	Soil	MFCHSTNTASFFSNLMAALIFSLSLAGVAAAQGNTSLGTGALPNNTTGQYNTASGFD
Ga0164302_111289721	3300012961	Soil	MFRHSTARFFSVLIVALIFSLSLAGIAAAQGNTSLGTGALQTNTTGSYNTAIGVD
Ga0126369_101329654	3300012971	Tropical Forest Soil	MFSRSTHTASFFSILIAIIFSLCLAGVAAAQVNNTSLGTGALQNN
Ga0126369_101635491	3300012971	Tropical Forest Soil	MFQHSSNAVSFFSVLIVALISLLSLVELAAAQGNTSLGTGALQNNTT
Ga0163162_106125882	3300013306	Switchgrass Rhizosphere	MFRHSTNTASFFSVLLAALIFSLYLAGVAPAQTNTSLGTNALVSNITGVNN
Ga0132258_118003683	3300015371	Arabidopsis Rhizosphere	MHRHSTNTASFFSVLLAALIFSLSLAGIAAAQGNTSLGTGALQTNTTGSY
Ga0132256_1015710001	3300015372	Arabidopsis Rhizosphere	FFSVLIAALIFSLSLAGVAAAQSNTHLGTGSLASNTTGANNTATGLNLLV*
Ga0132256_1032691652	3300015372	Arabidopsis Rhizosphere	MFRHSTARFFSVLIVALIFSLSLAGIAPAQTNTSLGTNALVSNTTGNNNTAVGFQTLFS
Ga0132257_1000855641	3300015373	Arabidopsis Rhizosphere	MFRHSTNTASFFTVLIVVLIFSLSLAGVAAAQDNTSLGTGALQNNTTGSQNTAIGVD
Ga0132257_1014201011	3300015373	Arabidopsis Rhizosphere	MLRYSSEAALFLSVTIAALIFSLGLAGLAAAQTNTSLGTGSLGSNTTG
Ga0182041_107511241	3300016294	Soil	MHRHSINTASFFSVLMAAFIFSLCLAGVAAAQTNTSLGTGALQNNTTGR
Ga0182033_110214092	3300016319	Soil	MLRNSSNAASFLSVLIAAFVFSLSLVGMAAAQSNTSLGTGALVSNITGSNNTGLGF
Ga0182035_120424431	3300016341	Soil	MFHNSTKTAQFCFMVIATFVFSLSLAGIATAQSNTSLGTGALVSNSTGSNNT
Ga0182032_111891801	3300016357	Soil	MLRNSSKTASSFVLIAALIFSFSLAEIVRAQSNTTLGTGALVSNTTG
Ga0182032_119883461	3300016357	Soil	MVRHSTHTASLFSVLMAALIVSLSLAGGAAAQGNTNLGTRALQSNTTGIFNTAIGFEALEHNTT
Ga0182034_106560691	3300016371	Soil	MHRHFTNKASLFSVLINVLIFSLCLAGVAAAQSNTSLGTGTLQHNITGSF
Ga0182034_116940941	3300016371	Soil	MLRNSTKTASFFSVLVVVVIFSLSLVGVAAAQTNTSLGSGALASNMTGNANTAL
Ga0182034_118735621	3300016371	Soil	MLRNSTTAASFFFMLVATLIFSFSRASLATAQTNPSLGSGALASNMTGNANSSANTGTGV
Ga0182037_105792322	3300016404	Soil	MHRHSTNTASFFFFLIAALIFWLSLAGVAAAQTGNTSLGTGALQNNTTGSFNTA
Ga0182039_106313781	3300016422	Soil	MLRNSTNTVSSSVVLTGALLFSLSLVDIAAAQSNTSLGTGALVSNTTGS
Ga0182039_116882592	3300016422	Soil	MLRNSITTASIFALLFSLSVAEIAKAQSNTSLGTGALVSNTTGSNYTAVGLNALFTK
Ga0182038_118409421	3300016445	Soil	MLRNSSKTASSFVLIAALIFSFSLAEIVRAQSNTTLGTGALVSNTTGSNNTASDS
Ga0163161_114026321	3300017792	Switchgrass Rhizosphere	MFRHSTNTASFIFVLIAALLFSLSLAGVAVAQTNTSLGTNAFVSNTTGLNNTAI
Ga0187821_102838401	3300017936	Freshwater Sediment	MIRNSTNAASFFYMLTVAIILSLFLAGVAASQTNTSLGTGALVSNSTGSNNTAL
Ga0184634_104121791	3300018031	Groundwater Sediment	MLRNSTNTASFFTVLMVALIFSLSLAGVAAAQGNTSLGTGALQNNITGSYNTAIG
Ga0184611_11404881	3300018067	Groundwater Sediment	MFCHSTNTASFLSVAIAVLMFSLSLARVAAAQTNTSLGTNALISNTTGGFNTA
Ga0184624_100521902	3300018073	Groundwater Sediment	MFRHSTNTVSFFSVLMAALIFSLSLAGVAAAQTNTSLGAGAFVSNTTGINNTAVGFQT
Ga0184625_100062405	3300018081	Groundwater Sediment	MFRHSTNTVSFFSVLMAALIFSLSLAGVAAAQTNTSLVAGAFVSNTTGINNTAVGFQTLFSNT
Ga0126371_134595741	3300021560	Tropical Forest Soil	MLRNSTKTASFFSILIAALVFSLSLVGIAAAQGNTSLGTGALHNNTTGHDKGGL
Ga0222622_111870882	3300022756	Groundwater Sediment	MFRHSTNTASFLSVVIAALIFWLSLAGVAAAQDNTSLGTNALISNTTGGFNTAIGS
Ga0207701_102669031	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MFGHSTHPASFFSVLMAALILSLSLVGVAAAQTNTSLGTNALVSNTT
Ga0207701_107018021	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MFRHSTARFFSELIVALIFSLSLAGVAAAQTNTSLGTNALVSNIT
Ga0207701_115662131	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MLRNSTNTASFFTVLVAVLILSFSLAGVAPAQTNTSLGTGALQSNTTGSANT
Ga0207701_117217851	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MFRHSTNTASFLSVVIAVLISWLSLAGVAAAQDNTSLGTNALISNTTGGFNTAI
Ga0207690_117816291	3300025932	Corn Rhizosphere	MLRKINAASFLSVLIAELIYSFLLTGFAAAQNNTSFGTGALQNNTTGKFNTATG
Ga0207704_114871131	3300025938	Miscanthus Rhizosphere	MFSHSTNTSSFFAVLIAGLIFSLSLAGVTAAQNNNTSLGTGALQSNTTGFSNTASGVQA
Ga0207668_103773171	3300025972	Switchgrass Rhizosphere	MFRHSTNPVSFIFVLIAALIFSLSLGGVAAAQTNTSLGTNAFVSNTTGINNTAIGFQTLF
Ga0209177_102846281	3300027775	Agricultural Soil	MFSHSTNTASFFLVVIAALIFSFSLAAIAAAQSNTTVGTGALVSNTTGSFNTAIG
Ga0247828_107710841	3300028587	Soil	MRHNSTSTAWFCSILISGLIYLLSLPGIAAAQSNTSLGTGALVSNTTGSNNTALGAS
Ga0307498_100653593	3300031170	Soil	MFRHSTNTASFLSVVIAVLMFSLSLAGVAAAQQGNTSLGTGALQNNTT
Ga0170824_1175647591	3300031231	Forest Soil	MFRHSTNTASFLSVVIAVLMFSLSLAGVAAAQDNTSLGTNALISNTTGGFNTAIGSNALT
Ga0307469_102350552	3300031720	Hardwood Forest Soil	MFQHSSNTASFFSVLIVALIFSLGLAGIAAAQGNTSLGTGTLQNNTTGSYNTPEY
Ga0307468_1006796472	3300031740	Hardwood Forest Soil	MFQHSSNTASFFSVLIVALIFSLGLAGIAAAQGNTSLGTGALQNNTTGSYNTPEY
Ga0307473_108928101	3300031820	Hardwood Forest Soil	MSHHSTNTTSFFSVLMATLIFSLSLAGVAAAQSNTSLGTDALRNNAGGNNTGIGSNALRSNTTGST
Ga0310892_104796643	3300031858	Soil	MLRHSTNTGSFFSVLVAGLIFTLSLAGVAAAQNNTSLGTGALQSNTTGNFNTA
Ga0310892_106556822	3300031858	Soil	MFRQSTNTESFFSILIAAFFSLSLAGVAAAQNNNTSLGTGALQSNTTGNFNTASGFVAL
Ga0310912_110693721	3300031941	Soil	MHHDSTNTASFFSVLMAALIVSLSLAGVAAAQGNTSLGTGALQRNTTGSFNTAIGSNAL
Ga0310909_114534381	3300031947	Soil	MLHNSANTASFFSVVMTALLFSLSLVGIAAAQPNTSLGQGALVSNSTGSNNTAVGLNALGSNSTGSD
Ga0310906_110122691	3300032013	Soil	MFRHSTNTASFLSVVIAVLMFSLSLAGVAAAQTNTSLGTGALQNNTTGSNNT
Ga0310899_107299441	3300032017	Soil	MLRHSTNTASFFAVLMAGLIFSLWLAGIAAAQNNNTSLGTGALQSNSTGNFNTA
Ga0310895_106011131	3300032122	Soil	MFRQSTNTESFFSILIAAFIFSLSLAGVAAAQNNNTSLGTGALQSNTTGNFNTASGFVAL
Ga0307471_1013182421	3300032180	Hardwood Forest Soil	MFRHSTTTASFFTILIAVLTFSLSLAGIAAAQQDNTSLGTGALQNNTTGSFNTAIGQDAL
Ga0307472_1022080171	3300032205	Hardwood Forest Soil	MLRHSTNTASFFSVLMAALIFSLSLAGVAAAQTNTSLGAGALVNNTTGINNTAVGFQTLF
Ga0306920_1010983362	3300032261	Soil	MFHNSTKTAQFCFMVIATFVFSLSLAGIATAQSNTSLGTGALVSNSTGSNNTAV
Ga0310914_105835232	3300033289	Soil	MLCNSSKTASFFFALLAALLCSLSVAEIAMAQSNTSLGTGALVSNSTGSNNTAVGLNALFTK
Ga0310810_107602372	3300033412	Soil	MIRNSTNAASFFYMLTVAIILSLFLAGVAASQTNTSLGTGALVSNSTGSNNTALGASALL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F059192

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences