Metagenome / Metatranscriptome Family F058984

Overview

Basic Information

• Family ID: F058984
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 134
• Average Sequence Length: 49 residues
• Representative Sequence: MTTLPIRAPIVPPLAGLARVISYFNIAIEVFAEAQQQAAEAHKRFPFAEW
• Number of Associated Samples: 108
• Number of Associated Scaffolds: 134

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 79.85 %
• % of genes near scaffold ends (potentially truncated): 26.87 %
• % of genes from short scaffolds (< 2000 bps): 88.06 %
• Associated GOLD sequencing projects: 100
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (63.433 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (9.702 % of family members)
• Environment Ontology (ENVO): Unclassified (31.343 % of family members)
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant rhizosphere (48.507 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 39.74%
  β-sheet: 0.00%
  Coil/Unstructured: 60.26%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 134 Family Scaffolds
PF07045	DUF1330	50.00
PF13577	SnoaL_4	9.70
PF01464	SLT	5.97
PF07883	Cupin_2	0.75
PF08857	ParBc_2	0.75
PF04909	Amidohydro_2	0.75
PF00950	ABC-3	0.75
PF02515	CoA_transf_3	0.75

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 134 Family Scaffolds
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	50.00
COG0609	ABC-type Fe3+-siderophore transport system, permease component	Inorganic ion transport and metabolism [P]	0.75
COG1108	ABC-type Mn2+/Zn2+ transport system, permease component	Inorganic ion transport and metabolism [P]	0.75
COG1804	Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases	Lipid transport and metabolism [I]	0.75
COG4318	Uncharacterized conserved protein	Function unknown [S]	0.75
COG4606	ABC-type enterochelin transport system, permease component	Inorganic ion transport and metabolism [P]	0.75

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	63.43 %
Unclassified	root	N/A	36.57 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	63.43 %
Unclassified	root	N/A	36.57 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	63.43 %
Unclassified	root	N/A	36.57 %

Level 4

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	56.72 %
Unclassified	root	N/A	36.57 %

Level 5

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	39.55 %
Unclassified	root	N/A	36.57 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3.73 %

Level 6

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.57 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	33.58 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	3.73 %

Level 7

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.57 %
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	3.73 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	2.99 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	2.99 %

Level 8

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.57 %
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	3.73 %
Pseudolabrys	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys	2.99 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	2.99 %

Level 9

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.57 %
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	3.73 %
unclassified Pseudolabrys	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys	2.99 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	2.99 %

Level 10

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.57 %
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	3.73 %
Pseudolabrys sp. Root1462	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	2.24 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2.99 %
Pseudolabrys sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp.	0.75 %

Associated Scaffolds

Scaffold	Taxonomy	Length
2162886007|SwRhRL2b_contig_1168976	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1077
2209111006|2214834100	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1772
3300000041|ARcpr5oldR_c000380	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6214
3300000156|NODE_c0687657	All Organisms → cellular organisms → Bacteria	3309
3300000890|JGI11643J12802_11375925	Not Available	527
3300000955|JGI1027J12803_107528506	Not Available	1398
3300003324|soilH2_10266620	Not Available	1365
3300003994|Ga0055435_10200867	Not Available	574
3300004062|Ga0055500_10057450	All Organisms → cellular organisms → Bacteria	794
3300004114|Ga0062593_100278956	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1406
3300004114|Ga0062593_100305431	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1359
3300004114|Ga0062593_100899425	Not Available	895
3300004114|Ga0062593_101037002	Not Available	845
3300004156|Ga0062589_100235198	All Organisms → cellular organisms → Bacteria	1359
3300004156|Ga0062589_100249469	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1329
3300004156|Ga0062589_101147539	Not Available	739
3300004463|Ga0063356_106193324	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	513
3300004479|Ga0062595_100417073	All Organisms → cellular organisms → Bacteria	970
3300004479|Ga0062595_101763024	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	586
3300005159|Ga0066808_1008243	Not Available	904
3300005168|Ga0066809_10059963	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	868
3300005277|Ga0065716_1002346	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1899
3300005328|Ga0070676_10383670	All Organisms → cellular organisms → Bacteria → Proteobacteria	974
3300005332|Ga0066388_100295750	All Organisms → cellular organisms → Bacteria → Proteobacteria	2263
3300005332|Ga0066388_102483695	All Organisms → cellular organisms → Bacteria → Proteobacteria	941
3300005332|Ga0066388_104138592	All Organisms → cellular organisms → Bacteria → Proteobacteria	740
3300005336|Ga0070680_100262377	All Organisms → cellular organisms → Bacteria → Proteobacteria	1461
3300005339|Ga0070660_100044005	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3412
3300005366|Ga0070659_101091689	All Organisms → cellular organisms → Bacteria	703
3300005434|Ga0070709_10221173	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1350
3300005438|Ga0070701_10226744	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1117
3300005440|Ga0070705_100176687	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1442
3300005455|Ga0070663_100831562	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	793
3300005458|Ga0070681_10583404	Not Available	1032
3300005458|Ga0070681_10907438	All Organisms → cellular organisms → Bacteria	800
3300005468|Ga0070707_100494480	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	1185
3300005529|Ga0070741_10001212	All Organisms → cellular organisms → Bacteria → Proteobacteria	81295
3300005544|Ga0070686_101091641	All Organisms → cellular organisms → Bacteria → Proteobacteria	659
3300005547|Ga0070693_101215692	Not Available	579
3300005615|Ga0070702_100514570	Not Available	881
3300005616|Ga0068852_100213544	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1831
3300005713|Ga0066905_101330604	Not Available	647
3300005713|Ga0066905_101816972	All Organisms → cellular organisms → Bacteria	562
3300005713|Ga0066905_101932494	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	546
3300005719|Ga0068861_101070445	Not Available	773
3300005764|Ga0066903_103778396	Not Available	814
3300005841|Ga0068863_100426105	All Organisms → cellular organisms → Bacteria → Proteobacteria	1300
3300005937|Ga0081455_10027927	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5162
3300006574|Ga0074056_11521625	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	770
3300006575|Ga0074053_10006847	All Organisms → cellular organisms → Bacteria → Proteobacteria	925
3300006806|Ga0079220_10116088	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1418
3300006806|Ga0079220_10838549	Not Available	702
3300006806|Ga0079220_11045764	Not Available	654
3300006854|Ga0075425_100167949	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2519
3300006881|Ga0068865_100042081	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3113
3300006904|Ga0075424_102840095	Not Available	504
3300006914|Ga0075436_100689621	Not Available	756
3300009036|Ga0105244_10525632	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp.	545
3300009094|Ga0111539_10051313	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	4913
3300009098|Ga0105245_10726595	All Organisms → cellular organisms → Bacteria → Proteobacteria	1028
3300009148|Ga0105243_11470904	Not Available	704
3300009148|Ga0105243_11973792	Not Available	617
3300009162|Ga0075423_10593366	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1167
3300009174|Ga0105241_10751868	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	894
3300009545|Ga0105237_10076507	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	3337
3300010046|Ga0126384_10869982	Not Available	812
3300010047|Ga0126382_12241919	Not Available	526
3300010359|Ga0126376_10186849	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1703
3300010359|Ga0126376_10972646	Not Available	846
3300010359|Ga0126376_11380400	Not Available	728
3300010359|Ga0126376_12082642	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	611
3300010362|Ga0126377_10245264	All Organisms → cellular organisms → Bacteria → Proteobacteria	1741
3300010371|Ga0134125_10654900	Not Available	1159
3300010371|Ga0134125_10670349	Not Available	1144
3300010396|Ga0134126_10306692	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1862
3300010400|Ga0134122_12048039	Not Available	612
3300010403|Ga0134123_13634696	Not Available	500
3300012485|Ga0157325_1037536	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	514
3300012513|Ga0157326_1012754	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	962
3300012893|Ga0157284_10136246	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	682
3300012943|Ga0164241_10688673	All Organisms → cellular organisms → Bacteria	741
3300012957|Ga0164303_10156464	Not Available	1213
3300012957|Ga0164303_10456320	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	806
3300012985|Ga0164308_11147366	Not Available	699
3300012987|Ga0164307_10799886	Not Available	749
3300013102|Ga0157371_11231730	Not Available	577
3300013296|Ga0157374_10688688	Not Available	1035
3300013306|Ga0163162_13179586	Not Available	527
3300014318|Ga0075351_1052068	Not Available	763
3300014497|Ga0182008_10258747	Not Available	900
3300015077|Ga0173483_10830073	Not Available	537
3300015371|Ga0132258_10690882	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	2568
3300015371|Ga0132258_11427218	Not Available	1749
3300015372|Ga0132256_100100739	All Organisms → cellular organisms → Bacteria	2812
3300015373|Ga0132257_100936026	All Organisms → cellular organisms → Bacteria → Proteobacteria	1088
3300015374|Ga0132255_100373972	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2069
3300015374|Ga0132255_102656215	Not Available	765
3300017792|Ga0163161_10816968	Not Available	784
3300017930|Ga0187825_10178600	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	758
3300017930|Ga0187825_10335916	Not Available	569
3300019361|Ga0173482_10001295	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4997
3300021445|Ga0182009_10615428	Not Available	582
3300024055|Ga0247794_10273719	Not Available	563
3300025271|Ga0207666_1003306	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1977
3300025538|Ga0210132_1004665	All Organisms → cellular organisms → Bacteria → Proteobacteria	1756
3300025900|Ga0207710_10074060	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1567
3300025901|Ga0207688_10257746	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1058
3300025914|Ga0207671_11084354	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	629
3300025932|Ga0207690_11247798	Not Available	621
3300025945|Ga0207679_10302230	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1380
3300025945|Ga0207679_11082168	Not Available	735
3300025972|Ga0207668_11872942	Not Available	541
3300025981|Ga0207640_10574839	Not Available	950
3300026078|Ga0207702_10170453	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1995
3300026088|Ga0207641_10285759	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1553
3300027483|Ga0207637_1002170	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	979
3300027560|Ga0207981_1006970	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1999
3300027560|Ga0207981_1037134	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	887
3300027665|Ga0209983_1049864	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58	915
3300027682|Ga0209971_1014173	All Organisms → cellular organisms → Bacteria → Proteobacteria	1889
3300027876|Ga0209974_10049507	All Organisms → cellular organisms → Bacteria → Proteobacteria	1410
3300027876|Ga0209974_10138649	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	871
3300027907|Ga0207428_10216845	All Organisms → cellular organisms → Bacteria → Proteobacteria	1436
3300031226|Ga0307497_10357563	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	686
3300031716|Ga0310813_10020139	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4539
3300031716|Ga0310813_10343352	All Organisms → cellular organisms → Bacteria → Proteobacteria	1270
3300031913|Ga0310891_10045219	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1215
3300032144|Ga0315910_10046976	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3146
3300032180|Ga0307471_102460395	Not Available	658
3300032205|Ga0307472_101051901	Not Available	767
3300032421|Ga0310812_10083659	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1289
3300033004|Ga0335084_10361684	All Organisms → cellular organisms → Bacteria → Proteobacteria	1497
3300033513|Ga0316628_101133207	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1041
3300033551|Ga0247830_10405457	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1061

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	59.70%
Host-Associated	Host-Associated	39.55%
Engineered	Engineered	0.75%

Class

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	55.97%
Plants	Host-Associated → Plants	39.55%
Aquatic	Environmental → Aquatic	3.73%
Solid Waste	Engineered → Solid Waste	0.75%

Category

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	55.97%
Rhizoplane	Host-Associated → Plants → Rhizoplane	20.15%
Rhizosphere	Host-Associated → Plants → Rhizosphere	19.40%
Marine	Environmental → Aquatic → Marine	2.24%
Freshwater	Environmental → Aquatic → Freshwater	1.49%
Grass	Engineered → Solid Waste → Grass	0.75%

Type

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	41.04%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	13.43%
Loam	Environmental → Terrestrial → Soil → Loam	12.69%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	12.69%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	6.72%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.72%
Wetlands	Environmental → Aquatic → Marine → Wetlands	2.24%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.24%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.49%
Composting	Engineered → Solid Waste → Grass → Composting	0.75%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.37%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	13.43%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	12.69%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	11.19%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.46%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	6.72%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.72%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.22%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	2.24%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.24%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.49%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.49%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.49%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.49%
Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor	0.75%

Habitat

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	7.46%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	5.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.22%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.22%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.22%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.48%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.48%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	4.48%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.73%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	3.73%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.99%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	2.24%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.24%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.24%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.24%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.24%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.24%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.49%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.49%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.49%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.49%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.49%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	1.49%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.49%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.75%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.75%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.75%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.75%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.75%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.75%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.75%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.75%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.75%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.75%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.75%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.75%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.75%
Sugar Cane Bagasse Incubating Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor → Sugar Cane Bagasse Incubating Bioreactor	0.75%

Associated Samples

Taxon OID	Sample Name	Habitat Type
2162886007	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated
2209111006	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample Wild type Col-0	Host-Associated
3300000041	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Arabidopsis cpr5 old rhizosphere	Host-Associated
3300000156	Sugar cane bagasse incubating bioreactor microbial communities from Sao Carlos, Brazil, that are aerobic and semianaerobic	Engineered
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental
3300003324	Sugarcane bulk soil Sample H2	Environmental
3300003994	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D2	Environmental
3300004062	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqA_D2	Environmental
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental
3300005159	Soil and rhizosphere microbial communities from Laval, Canada - mgLPB	Environmental
3300005168	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC	Environmental
3300005277	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample Wild type Col-0	Host-Associated
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated
3300006574	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAA (Metagenome Metatranscriptome)	Environmental
3300006575	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAA (Metagenome Metatranscriptome)	Environmental
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated
3300009036	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG	Host-Associated
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental
3300012485	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.7.old.040610	Host-Associated
3300012513	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.2.old.250510	Host-Associated
3300012893	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S059-202B-1	Environmental
3300012943	Backyard soil microbial communities from Emeryville, California, USA - Original compost - Back yard soil (BY)	Environmental
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated
3300014318	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqA_D1_rd	Environmental
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated
3300015372	Soil combined assembly	Host-Associated
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated
3300015374	Col-0 rhizosphere combined assembly	Host-Associated
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental
3300024055	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S046-202B-6	Environmental
3300025271	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5 (SPAdes)	Environmental
3300025538	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleC_D2 (SPAdes)	Environmental
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated
3300027483	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05.2A1-12 (SPAdes)	Environmental
3300027560	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC (SPAdes)	Environmental
3300027665	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S PM (SPAdes)	Host-Associated
3300027682	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes)	Host-Associated
3300027876	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes)	Host-Associated
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental
3300031913	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D4	Environmental
3300032144	Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soil	Environmental
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental
3300032421	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NN3	Environmental
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
SwRhRL2b_0832.00006490	2162886007	Switchgrass Rhizosphere	MTTLPIRAPIVPPLAGLARVISYFNIAIEVFAEAQQQAAEAHKRYPFAAW
2213874108	2209111006	Arabidopsis Rhizosphere	MTTLPIRAPIVPTLAGLARVISYFNIAIEVFAEAQQQAAEAHKRYPFAAW
ARcpr5oldR_0003803	3300000041	Arabidopsis Rhizosphere	MTTLPIRAPIVPPLAGLARVISYFNIAIEVFAEAQQQAAEAHKRYPFAAW*
NODE_06876574	3300000156	Sugar Cane Bagasse Incubating Bioreactor	MTTLPIRAPIVPSLAGLARVLSYIDIAIEVFAEAQQQAAAAHKRFPLAAW*
JGI11643J12802_113759252	3300000890	Soil	MTTLPIRAPIVPPLAGLARVISYFNLAIEVFAEAQQQAAAAHKRFPFADW*
JGI1027J12803_1075285062	3300000955	Soil	MTTLPIRAPVVPSLAGFARLISYLDIAIEVFAEVKQQAAEAHKRFPFADW*
soilH2_102666203	3300003324	Sugarcane Root And Bulk Soil	MTTLPIRAPMVPPIYGLARILSFFAIVSESFAEARQLAVEAHKRYPFAEW*
Ga0055435_102008672	3300003994	Natural And Restored Wetlands	MTTLPIRAPIVPPLAGLARVISYFNIAIEVFAEAQQQAAEAHKRFPFAEW*
Ga0055500_100574502	3300004062	Natural And Restored Wetlands	MITLPIRVPIVPPLAGLARVISYFNIAIEVFAEAQQQAAEAHKRFPFAEW*
Ga0062593_1002789563	3300004114	Soil	MTTLPIRVPIVPPLAGLARVILYFNIAIEVFAEAQQQAAEAHKRFPFADW*
Ga0062593_1003054311	3300004114	Soil	MTTLPIRAPIVPPLAGLARLISYCNLAIEVFAEAQQHAAAAHKRFPFADW*
Ga0062593_1008994252	3300004114	Soil	MTTLPIRAPIVPSLAGLARVIAYFDIAIEVFAEARQQAAAAHKRFPFAEW*
Ga0062593_1010370022	3300004114	Soil	MTTLPIHAPIVPSLSGLARVIAYFDIAIDVFVETRQQAIAAHKRYPFADW*
Ga0062589_1002351983	3300004156	Soil	MTTLPIRAPIVPSLAGLARVISYFTLAIEVFAEAQQQAAEAHKRFPFAEW*
Ga0062589_1002494691	3300004156	Soil	MTTLPIRAPIVPPLAGLARLISYCNLAIEVFAEAQQHAAAA
Ga0062589_1011475391	3300004156	Soil	MTTLPIRAPIMPPLAGLARVISYFNFAIEVFTEAQQQAALAHKRFPFAEW*
Ga0063356_1061933242	3300004463	Arabidopsis Thaliana Rhizosphere	MTTLPIRAPIMPPLAGLARVISYLNIAIEVFAEAQQQAVEAHKRYPFAAW*
Ga0062595_1004170733	3300004479	Soil	MTTLPIRAPIVPSLAGLARVISYFTLAIEVFAEAQQQAAEAHRRFPFAEW*
Ga0062595_1017630242	3300004479	Soil	MTTLPIRAPIELPFAGFARVMLFCKALIEVFADAQQQANAAHKRYPFAEW*
Ga0066808_10082432	3300005159	Soil	MTTLPIRAPIVPSLVGLARVISYFNIAIEVFAEAQQQAAAAHKRFPFAEW*
Ga0066809_100599633	3300005168	Soil	PIRAPIVPPLAGLARVISYFNIAIEVFAEAQQQAAEAHKRYPFAAW*
Ga0065716_10023465	3300005277	Arabidopsis Rhizosphere	PIRAPIVPTLAGLARVISYFNIAIEVFAEAQQQAAEAHKRYPFAAW*
Ga0070676_103836703	3300005328	Miscanthus Rhizosphere	MTTLPIRAPIVPLAGLARVISYFNIAIEVFAEAQQQAAEAHKRYPFAAW*
Ga0066388_1002957504	3300005332	Tropical Forest Soil	MTTLPIRAPIVPSLAGLARVLSYFSIAIEVLTEAQQQAAEAHKRFPFAEW*
Ga0066388_1024836951	3300005332	Tropical Forest Soil	MTTLPIRAPIVSPLAGFARVFSYFNVLIEAFAEAQQQAAQAHKRFPFADW*
Ga0066388_1041385921	3300005332	Tropical Forest Soil	MTTLPIRAPIVPSLAGLARVLSYFNIAIEVFAEAQQQAAAAHKRFPFAEW*
Ga0070680_1002623773	3300005336	Corn Rhizosphere	MTTLPIRAPIVPSLVGLARVISYFNIAIEVFAEAQQQATAAHRRFPFAEW*
Ga0070660_1000440056	3300005339	Corn Rhizosphere	PIVPPLAGLARVISYFNIAIEVFAEAQQQAAEAHKRYPFAAW*
Ga0070659_1010916893	3300005366	Corn Rhizosphere	RKSEMTTLPIRAPIVPSLAGLARVLSYIDIAIEVFAEAQQQAAAAHKRFPLAAW*
Ga0070709_102211733	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MTTLPIRAPIELPFAGFARVISFCKALIEVFAVAQQQANAAHKRYPFAEW*
Ga0070701_102267443	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MTTLPIRVPIVPPLAGLARVILYFNIAIEVFAEAQQQAAEAHKRYPFAAW*
Ga0070705_1001766873	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MTTLPIRAPIVPPFAGLARVISYFNIAIEVFAEAQQQAAEAHKRYPFAAW*
Ga0070663_1008315621	3300005455	Corn Rhizosphere	MTTLPIRAPIVPPLAGLARVISYFNIAIEVFAEAQQQAAEAHK
Ga0070681_105834042	3300005458	Corn Rhizosphere	MTTLPIRAPIVPSLAGLARVLSYIDIAIEVFAEAQEQAAAAHKRFPLAAW*
Ga0070681_109074383	3300005458	Corn Rhizosphere	MTTLPIRAPIVLPLAGLSRMISYFNLAIEVFAEAQQQAAAAHKRFPFADW*
Ga0070707_1004944802	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MTTLPIRAPIVPPVAGLARVISYFNIAIEVFAEAQQQAAEAHKRYPFAAW*
Ga0070741_1000121268	3300005529	Surface Soil	MTTLPIRAPFVPPLSGAARLLSFFRIVIESFSEAQRLAAEAHKRYPFAEW*
Ga0070686_1010916411	3300005544	Switchgrass Rhizosphere	LPIRAPIVPSLAGLARVISYFTLAIEVIAEAQQQAAEAHKRFPFAEW*
Ga0070693_1012156921	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	LPIRAPIVPSLAGLARVLSYIDIAIEVFAEAQQQAAAAHRRFPLAAW*
Ga0070702_1005145702	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MTTLPIRAPIVPPLVGLARVISDFNIAIEVFAEAQQQATAAHKRFPFADW*
Ga0068852_1002135441	3300005616	Corn Rhizosphere	VPPLAGLARVISYFNIAIEVFAEAQQQAAEAHKRYPFAAW*
Ga0066905_1013306042	3300005713	Tropical Forest Soil	MTTLPIRAPVVPSLAGLARVFSYFSIAIEVFTEAQQQAAEAHKRFPFAEW*
Ga0066905_1018169722	3300005713	Tropical Forest Soil	MTTLPIRAPIVPSLAGLARLIAYLDLAIEVFAEAQQQAAAAHERFPFAEW*
Ga0066905_1019324942	3300005713	Tropical Forest Soil	MTTLPIRAPIVPSFAGLARVLSYFSIAIEVFAESQQQAAEAHKRFPFAEW*
Ga0068861_1010704453	3300005719	Switchgrass Rhizosphere	MTTLPIRAPIVPPLVGLARVISYFNIAIEVFAEAQQQATAAHKRFPFADW*
Ga0066903_1037783962	3300005764	Tropical Forest Soil	MTTLPIRAPIVPSLAGLARVFSYFSIAIEVLTEAQQQAAEAHKRFPFAEW*
Ga0068863_1004261051	3300005841	Switchgrass Rhizosphere	RAPIVPPLAGLARVISYFNIAIEVFAEAQQQAAEAHKRYPFAAW*
Ga0081455_100279278	3300005937	Tabebuia Heterophylla Rhizosphere	MTTLPIRAPIVPSLAGLARVLSYFSIAIEVFAEAQRQAAEAHKRFPFAEW*
Ga0074056_115216252	3300006574	Soil	MTTLPIRAPIVPPLAGLTRVISYFNIAIEVFAEAQQQAAEAHKRYPFAAW*
Ga0074053_100068473	3300006575	Soil	GLARVISYFNIAIEVFAEAQQQAAAAHKRFPFAEW*
Ga0079220_101160883	3300006806	Agricultural Soil	MTTLPIRAPIDLPFAGFARVIFFCKALIEVFAEAQQQA
Ga0079220_108385492	3300006806	Agricultural Soil	MTTLPIRAPIVPPLAGLARVISYFNLAIEVFAEAQQQAAQAHKRFPFAEW*
Ga0079220_110457643	3300006806	Agricultural Soil	MTTLPIRAPIVPSLAGLARVISYFDTALDIFAEAQQQAAEAHKRFPFAAW*
Ga0075425_1001679495	3300006854	Populus Rhizosphere	MTTLPIRAPIMPSLPGLARVLSCFNIAIEVFAEAQQQATAAHKRFPFAEW*
Ga0068865_1000420811	3300006881	Miscanthus Rhizosphere	PLAGLARVISYFNIAIEVFAEAQQQAAEAHKRYPFAAW*
Ga0075424_1028400951	3300006904	Populus Rhizosphere	MTTLPIRAPIVPLLVGLARVISYFNIAIEVFAEAQQQATAAHRRFPFAE*
Ga0075436_1006896212	3300006914	Populus Rhizosphere	MTTLPIRAPIMPSLPGLARVLSCFNIAIEVFAEAQQQATAAHKRFPFTEW*
Ga0105244_105256322	3300009036	Miscanthus Rhizosphere	MTTLPIRVPIVPPLAGLARVISYFNIAIEVFAEAQQQAAEAHKRYPFAAW*
Ga0111539_100513138	3300009094	Populus Rhizosphere	MTTLPIRAPTVPSLAGLARVLSYFKISIEVFAEAQQQAAAAHKRFPFAEW*
Ga0105245_107265953	3300009098	Miscanthus Rhizosphere	MTTLPIRAPIVPPLVGLARVISYFNIAIEVFAEAQQQAAEAHKRYPFAAW*
Ga0105243_114709042	3300009148	Miscanthus Rhizosphere	MTTLPIRAPIVRPLVGLARVISYFNIAIEVFAEAQQQATAAHKRFPFADW*
Ga0105243_119737922	3300009148	Miscanthus Rhizosphere	MTTLPIRVPIVPPLAGLTRVISYFNIAIEVFAEAQQQAAEAHKRYPFAAW*
Ga0075423_105933661	3300009162	Populus Rhizosphere	NTQKRRTEEMTTLPIRAPIVPPLAGLARVISYFNIAIEVFAEAQQQAAEAHKRYPFAAW*
Ga0105241_107518681	3300009174	Corn Rhizosphere	PIRAPIVPPFAGLARVISYFNIAIEVFAEAQQQAAEAHKRYPFAAW*
Ga0105237_100765072	3300009545	Corn Rhizosphere	MTTLPIRVPIVPPLAGLARVILYFNIAIEVFAEAQQQAAEAHKRFPFAEW*
Ga0126384_108699822	3300010046	Tropical Forest Soil	MTTLPIRAPILPSLAGFARVFSYFDVLIEAFAEAQQQAAQAHKRFPFAEW*
Ga0126382_122419192	3300010047	Tropical Forest Soil	VPSLAGLARVLSYFSIAIEVFAEAQQQAAAAHKRFPFAEW*
Ga0126376_101868494	3300010359	Tropical Forest Soil	PSLAGLARVLSYIDIAIEIFAEAQQQAAAAHKRFPLAAW*
Ga0126376_109726462	3300010359	Tropical Forest Soil	MTTLPIRAPIVPSFAGLARLISYLDIAIEAFAEAQKQAAEAHKRYPFAAW*
Ga0126376_113804002	3300010359	Tropical Forest Soil	MTTLPIRAPIVLPLAGFARVISYFNILIEAFAEAQQQATQAH
Ga0126376_120826422	3300010359	Tropical Forest Soil	MTTLPIRAPIDLPFAGFARVILLCKALLEVFAEAQQQASAAHRRYPFAEW*
Ga0126377_102452643	3300010362	Tropical Forest Soil	MTTLPIRAPIVPPLAGFARVISYFNILIEAFAEAQQQAAQAHKRFPFADW*
Ga0134125_106549003	3300010371	Terrestrial Soil	MTTLPIRAPIVPSLAGLARVISYFDIAIEVFAEAQQQAAEAHKRFPFAAW*
Ga0134125_106703493	3300010371	Terrestrial Soil	MTTLPIRAPIVPSLAGLARMISYFNIAIEVFAEAQQQAAEAHKRFPFAEW*
Ga0134126_103066924	3300010396	Terrestrial Soil	MTTLPIRAPIVPSLAGLARVLSYIDIAIEVFAEAQEQAAAAHRRFPLAAW*
Ga0134122_120480392	3300010400	Terrestrial Soil	MTTLPIRAPIVPPLAGLARVISYFDIAIEVFAEAQQQAAEAHKRFPFAAW*
Ga0134123_136346962	3300010403	Terrestrial Soil	RTEEMTTLPIRAPIVPPLAGLARVISYFNIAIEVFAEAQQQAAEAHKRYPFAAW*
Ga0157325_10375362	3300012485	Arabidopsis Rhizosphere	MTTLPIRAPIVPPLAGLARVISYFNIAIEVFAEAQQQAAEAHKRYPFA
Ga0157326_10127541	3300012513	Arabidopsis Rhizosphere	MTTLPIRAPIVPLGGLARVISYFNIAIEVFAEAQQQAAEAHKRYPFAAW*
Ga0157284_101362461	3300012893	Soil	TEEMTTLPIRAPIVPPLAGLARVISYFNIAIEVFAEAQQQAAEAHKRYPFAAW*
Ga0164241_106886732	3300012943	Soil	MTTLPIRAPIVPSLAGLARVIACFNIAIEVFAEAKQQAAEAHKRFPFADW*
Ga0164303_101564643	3300012957	Soil	LVGLARVISYFNIAIEVFAEAQQQATAAHKRFPFADW*
Ga0164303_104563201	3300012957	Soil	MTTLPIRAPIVPRLVGLARVISYFNIAIEVFAEAQQQATAAHKRFPFA
Ga0164308_111473661	3300012985	Soil	RNTPKRRAREMTTLPIRAPIVPPLVGLARVISYFNIAIEVFAEAQQQATAAHKRFPFADW
Ga0164307_107998862	3300012987	Soil	MTTLPIRAPIVPRLVGLARVISYFNIAIEVFAEAQQQATAAHKRFPFADW*
Ga0157371_112317302	3300013102	Corn Rhizosphere	MTTLPIRAPIVPSLAGLARVLSYIDIAIEVFAEAQQQAAAAHRRFPLAAW*
Ga0157374_106886882	3300013296	Miscanthus Rhizosphere	MTTLPIRAPIVPSLAGLARVSAYFTLAIEVCAEAQQQAAEAHKRFPFAEW*
Ga0163162_131795862	3300013306	Switchgrass Rhizosphere	MTTLPIRAPIVPPLVGLARVISYFNIVIEVFAEAQQQATAAHKCFPFADW*
Ga0075351_10520681	3300014318	Natural And Restored Wetlands	MTTLPIRVPIVPPLAGLARVISYFNIAIEVFAEAQQQAAEAHKRFPFADW*
Ga0182008_102587472	3300014497	Rhizosphere	MTTLPIRAPIVPPLAGLARVISYYFNIAIEVFAEAQQQAAEAHKRFPFAEW*
Ga0173483_108300732	3300015077	Soil	MTTLPIRAPIVRPLVGLARVISYFNIAIEVFAVVQQQATAAHKRFPFADW*
Ga0132258_106908825	3300015371	Arabidopsis Rhizosphere	MTTLPIRAPIVPPLVGLARVISYFNIAIEVFAEAQQQATAAHRRFPFAEW*
Ga0132258_114272181	3300015371	Arabidopsis Rhizosphere	RRLVEMTTLPIRAPIVPSLAGLARVISYFDIVIEVFAEAQQQATAAHKRFPFAEW*
Ga0132256_1001007392	3300015372	Arabidopsis Rhizosphere	MTTLPIRAPIVPSLAGLARVISYFDIVIEVFAEAQQQATAAHKRFPFAEW*
Ga0132257_1009360263	3300015373	Arabidopsis Rhizosphere	MTTLPIRAPIVPPLAGLARVISYFNIAIEVFAEAQQQAAEAHKRYPFAGW*
Ga0132255_1003739721	3300015374	Arabidopsis Rhizosphere	MTTLPIRAPIVPPLVGLARAISYFNIAIEVFAEAQQQATAAHRRFPFAEW*
Ga0132255_1026562151	3300015374	Arabidopsis Rhizosphere	MTTLPIRAPIVPSLAGLARVISYFTLAIEVIAEAQQQAAEAHKRFPFAEW*
Ga0163161_108169682	3300017792	Switchgrass Rhizosphere	MTTLPIRAPIVPPLVGLARVISYFNIAIEVFAEAQQQATAAHKRFPFADW
Ga0187825_101786002	3300017930	Freshwater Sediment	MTTLPIRAPIELPFAGFARVKLFCKALIEVFADAQQQANAAHRRYPFAEW
Ga0187825_103359163	3300017930	Freshwater Sediment	MTTLPIRAPIELPFAGFARVISFCKALIEVFAVAQQQANAAHKRYPFAEW
Ga0173482_100012958	3300019361	Soil	MTTLPIRAPIVPPVAGLARVISYFNIAIEVFAEAQQQAAEAHKRYPFAAW
Ga0182009_106154282	3300021445	Soil	MTTLPIRAPIVPSLAGLARVISYFTLAIEVFAEAQQQAAEAHRRFPFAEW
Ga0247794_102737193	3300024055	Soil	PSLAGLARVISYFTLAIEVFAEAQQQAAEAHKRFPFAEW
Ga0207666_10033064	3300025271	Corn, Switchgrass And Miscanthus Rhizosphere	MTTLPIRAPIVPPFAGLARVISYFNIAIEVFAEAQQQAAEAHKRYPFAAW
Ga0210132_10046652	3300025538	Natural And Restored Wetlands	MTTLPIRAPIVPPLAGLARVISYFNIAIEVFAEAQQQAAEAHKRFPFAEW
Ga0207710_100740603	3300025900	Switchgrass Rhizosphere	MTTLPIRAPIVPSLAGLARVISYFTLAIEVFAEAQQQAAEAHKRFPFAEW
Ga0207688_102577462	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MTTLPIRAPIVPLAGLARVISYFNIAIEVFAEAQQQAAEAHKRYPFAAW
Ga0207671_110843542	3300025914	Corn Rhizosphere	MTTLPIRAPIVPPLVGLARVISYFNIAIEVFAEAQQQATTAHKRFPFAEW
Ga0207690_112477981	3300025932	Corn Rhizosphere	MTTLPIRVPIVPPLAGLARVILYFNIAIEVFAEAQQQAAEAQKR
Ga0207679_103022301	3300025945	Corn Rhizosphere	KRRTEEMTTLPIRAPIVPSLAGLARVISYFTLAIEVFAEAQQQAAEAHRRFPFAEW
Ga0207679_110821682	3300025945	Corn Rhizosphere	MTTLPIRAPIVPSLAGLARVLSYIDIAIEVFAEAQQQAAAAHKRFPLAAW
Ga0207668_118729422	3300025972	Switchgrass Rhizosphere	MTTLPIRAPIVPPLVGLARVISYFNIAIEVFAEAQQHAAAAHKRFPFADW
Ga0207640_105748394	3300025981	Corn Rhizosphere	PIRAPIVPPLVGLARVISYFNIAIEVFAEAQQQATAAHKRFPFADW
Ga0207702_101704531	3300026078	Corn Rhizosphere	PIVPSLAGLARVISYFTLAIEVFAEAQQQAAEAHKRFPFAEW
Ga0207641_102857594	3300026088	Switchgrass Rhizosphere	RAPIVPPLAGLARVISYFNIAIEVFAEAQQQAAEAHKRYPFAAW
Ga0207637_10021701	3300027483	Soil	TEEMTTLPIRAPIVPPLAGLARVISYFNIAIEVFAEAQQQAAEAHKRYPFAAW
Ga0207981_10069704	3300027560	Soil	MTTLPIRAPIVPSLVGLARVISYFNIAIEVFAEAQQQAAAAHKRFPFAEW
Ga0207981_10371341	3300027560	Soil	MTTLPIRAPIVPPLAGLARVISYFNIAIEVFAEAQQQAAE
Ga0209983_10498642	3300027665	Arabidopsis Thaliana Rhizosphere	MTTLPIRAPIVPPLAGLARLISYFNLAIEVFAEAQQQAAAAHKRFPFADW
Ga0209971_10141733	3300027682	Arabidopsis Thaliana Rhizosphere	MTTLPIRAPIVPPLAGLARVISYFNLAIEVFAEAQRQAAAAHKRFPFADW
Ga0209974_100495073	3300027876	Arabidopsis Thaliana Rhizosphere	MTTLPIRAPIMPPLAGLARVISYLNIAIEVFAEAQQQAVEAHKRYPFAAW
Ga0209974_101386493	3300027876	Arabidopsis Thaliana Rhizosphere	MTTLPIRVPIVPPLAGLARVILYFNIVIEVFAEAQQQAAEAHKRFPFADW
Ga0207428_102168452	3300027907	Populus Rhizosphere	MTTLPIRAPTVPSLAGLARVLSYFKISIEVFAEAQQQAAAAHKRFPFAEW
Ga0307497_103575632	3300031226	Soil	MTTLPIRAPIMPPLAGLARVISYFNIAIEVFAEAQQQAAEAHKRYPFAAW
Ga0310813_100201395	3300031716	Soil	MTTLPIRAPIVPPLAGLARVISYYFNIAIEVFAEAQQQAAEAHKRFPFAEW
Ga0310813_103433523	3300031716	Soil	MTTLPIRAPIELPFAGFARVMLFCKALIEVFADAQQQANAAHKRYPFAEW
Ga0310891_100452193	3300031913	Soil	MTTLPIRAPIVPPLAGLARVISYFNIAIEVFAEAQ
Ga0315910_100469765	3300032144	Soil	MTTLPIRAPIVPPLAGLARVISYFNIAIEVFAEAQQQAAAAHKRFPFADW
Ga0307471_1024603952	3300032180	Hardwood Forest Soil	MTTLPIRAPIVPSFAGLARLIAYLDLAIEVFAEVQQQAAEAHKRYPFAAW
Ga0307472_1010519011	3300032205	Hardwood Forest Soil	MTTLPIRAPIVPPLVGLARVISYFNIAIEVFAEAQQQATAAHRRFPFAEW
Ga0310812_100836591	3300032421	Soil	MTTLPIRAPIVPPLAGLARVISYYFNIAIEVFAEAQQQAAEAH
Ga0335084_103616843	3300033004	Soil	MTTLPIRVPIVLPLAGLARVISYFNIAIEVFAEAQQQAAEAHKCFPFADW
Ga0316628_1011332073	3300033513	Soil	MTTLPIRAPLVPPLAGLARVVSYFQIAIEVLTEAQQHAAAAHKRYPFAEW
Ga0247830_104054573	3300033551	Soil	RTIEMTTLPIRAPIVPSLVGLARVISYFNIAVEVFAEAQQQAAAAHKRFPFAEW