Metagenome / Metatranscriptome Family F058900

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F058900
Family Type	Metagenome / Metatranscriptome
Number of Sequences	134
Average Sequence Length	48 residues
Representative Sequence	MERRILVECKVRAHPIVVGGVIRQQMAEVPFPQHHDMVEALASD
Number of Associated Samples	72
Number of Associated Scaffolds	134

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	64.18 %
% of genes near scaffold ends (potentially truncated)	85.82 %
% of genes from short scaffolds (< 2000 bps)	94.78 %
Associated GOLD sequencing projects	63
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.21

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (94.776 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (39.552 % of family members)
Environment Ontology (ENVO)	Unclassified (70.896 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (57.463 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 47.22% β-sheet: 0.00% Coil/Unstructured: 52.78%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.21
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.21
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 134 Family Scaffolds
PF00196	GerE	2.24
PF01165	Ribosomal_S21	1.49
PF13416	SBP_bac_8	0.75
PF00924	MS_channel	0.75
PF00916	Sulfate_transp	0.75
PF13533	Biotin_lipoyl_2	0.75
PF13424	TPR_12	0.75
PF10282	Lactonase	0.75
PF08352	oligo_HPY	0.75
PF01934	HepT-like	0.75
PF00467	KOW	0.75
PF13531	SBP_bac_11	0.75
PF08240	ADH_N	0.75
PF12697	Abhydrolase_6	0.75
PF01527	HTH_Tnp_1	0.75
PF01425	Amidase	0.75
PF12833	HTH_18	0.75
PF07519	Tannase	0.75
PF01381	HTH_3	0.75
PF00248	Aldo_ket_red	0.75
PF00355	Rieske	0.75
PF01565	FAD_binding_4	0.75
PF03992	ABM	0.75
PF00872	Transposase_mut	0.75
PF13701	DDE_Tnp_1_4	0.75
PF07992	Pyr_redox_2	0.75
PF02705	K_trans	0.75
PF00903	Glyoxalase	0.75
PF04029	2-ph_phosp	0.75
PF00078	RVT_1	0.75
PF13432	TPR_16	0.75
PF01145	Band_7	0.75
PF01436	NHL	0.75
PF01925	TauE	0.75

COG ID	Name	Functional Category	% Frequency in 134 Family Scaffolds
COG0828	Ribosomal protein S21	Translation, ribosomal structure and biogenesis [J]	1.49
COG2045	Phosphosulfolactate phosphohydrolase or related enzyme	Coenzyme transport and metabolism [H]	1.49
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.75
COG0659	Sulfate permease or related transporter, MFS superfamily	Inorganic ion transport and metabolism [P]	0.75
COG0668	Small-conductance mechanosensitive channel	Cell wall/membrane/envelope biogenesis [M]	0.75
COG0730	Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family	Inorganic ion transport and metabolism [P]	0.75
COG2233	Xanthine/uracil permease	Nucleotide transport and metabolism [F]	0.75
COG2252	Xanthine/guanine/uracil/vitamin C permease GhxP/GhxQ, nucleobase:cation symporter 2 ( NCS2) family	Nucleotide transport and metabolism [F]	0.75
COG2361	HEPN domain protein, predicted toxin of MNT-HEPN system	Defense mechanisms [V]	0.75
COG2445	Uncharacterized HEPN domain protein YutE, UPF0331/DUF86 family	General function prediction only [R]	0.75
COG3158	K+ uptake protein Kup	Inorganic ion transport and metabolism [P]	0.75
COG3264	Small-conductance mechanosensitive channel MscK	Cell wall/membrane/envelope biogenesis [M]	0.75
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.75

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	94.78 %
Unclassified	root	N/A	5.22 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	94.78 %
Unclassified	root	N/A	5.22 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	94.78 %
Unclassified	root	N/A	5.22 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	23.88 %
Unclassified	root	N/A	5.22 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.75 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	15.67 %
Unclassified	root	N/A	5.22 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.75 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5.22 %
Unclassified	root	N/A	5.22 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2.99 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	1.49 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	5.22 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	2.24 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	2.24 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.49 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.49 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	5.22 %
Methylocapsa	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa	1.49 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.49 %
unclassified Beijerinckiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae	0.75 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	0.75 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	0.75 %
Rhodospirillales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	0.75 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.75 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	5.22 %
unclassified Methylocapsa	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → unclassified Methylocapsa	1.49 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.49 %
Beijerinckiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	0.75 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	0.75 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	0.75 %
Rhodospirillales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	0.75 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.75 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	5.22 %
Methylocapsa sp. S129	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → unclassified Methylocapsa → Methylocapsa sp. S129	1.49 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.49 %
Beijerinckiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	0.75 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	0.75 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	0.75 %
Rhodospirillales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	0.75 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.75 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.75 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004633\|Ga0066395_10452222	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	732	Open in IMG/M
3300005434\|Ga0070709_10471730	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	949	Open in IMG/M
3300005764\|Ga0066903_101567023	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1247	Open in IMG/M
3300005764\|Ga0066903_102364735	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1027	Open in IMG/M
3300005764\|Ga0066903_107099073	All Organisms → cellular organisms → Bacteria → Proteobacteria	580	Open in IMG/M
3300006755\|Ga0079222_11172927	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	684	Open in IMG/M
3300010048\|Ga0126373_10672817	All Organisms → cellular organisms → Bacteria	1092	Open in IMG/M
3300010048\|Ga0126373_11782725	All Organisms → cellular organisms → Bacteria	679	Open in IMG/M
3300010358\|Ga0126370_10070408	All Organisms → cellular organisms → Bacteria	2310	Open in IMG/M
3300010358\|Ga0126370_12303339	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300010360\|Ga0126372_10745888	All Organisms → cellular organisms → Bacteria	962	Open in IMG/M
3300010361\|Ga0126378_10161936	All Organisms → cellular organisms → Bacteria	2289	Open in IMG/M
3300010361\|Ga0126378_12117153	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	642	Open in IMG/M
3300010366\|Ga0126379_13173692	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300010366\|Ga0126379_13541329	All Organisms → cellular organisms → Bacteria	523	Open in IMG/M
3300010376\|Ga0126381_100769524	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	1381	Open in IMG/M
3300010376\|Ga0126381_101208078	All Organisms → cellular organisms → Bacteria	1093	Open in IMG/M
3300010376\|Ga0126381_101712027	Not Available	908	Open in IMG/M
3300010376\|Ga0126381_101910828	All Organisms → cellular organisms → Bacteria → Proteobacteria	856	Open in IMG/M
3300010376\|Ga0126381_102191284	All Organisms → cellular organisms → Bacteria	795	Open in IMG/M
3300010376\|Ga0126381_102580647	All Organisms → cellular organisms → Bacteria	727	Open in IMG/M
3300010376\|Ga0126381_103192319	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300010376\|Ga0126381_103930431	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
3300010376\|Ga0126381_104393362	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300010376\|Ga0126381_104879088	All Organisms → cellular organisms → Bacteria	515	Open in IMG/M
3300010398\|Ga0126383_11377081	All Organisms → cellular organisms → Bacteria	795	Open in IMG/M
3300012356\|Ga0137371_11450534	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300012971\|Ga0126369_11334008	All Organisms → cellular organisms → Bacteria	807	Open in IMG/M
3300016270\|Ga0182036_10055916	All Organisms → cellular organisms → Bacteria → Proteobacteria	2503	Open in IMG/M
3300016270\|Ga0182036_10131226	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → unclassified Methylocapsa → Methylocapsa sp. S129	1756	Open in IMG/M
3300016270\|Ga0182036_10151247	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1653	Open in IMG/M
3300016294\|Ga0182041_10571970	All Organisms → cellular organisms → Bacteria	989	Open in IMG/M
3300016294\|Ga0182041_11299527	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	666	Open in IMG/M
3300016294\|Ga0182041_11972065	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300016319\|Ga0182033_10882720	All Organisms → cellular organisms → Bacteria	791	Open in IMG/M
3300016319\|Ga0182033_11916146	All Organisms → cellular organisms → Bacteria	539	Open in IMG/M
3300016319\|Ga0182033_12182856	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300016341\|Ga0182035_10507664	All Organisms → cellular organisms → Bacteria → Proteobacteria	1030	Open in IMG/M
3300016341\|Ga0182035_11207621	All Organisms → cellular organisms → Bacteria → Proteobacteria	675	Open in IMG/M
3300016357\|Ga0182032_10349242	All Organisms → cellular organisms → Bacteria	1183	Open in IMG/M
3300016357\|Ga0182032_10361781	Not Available	1164	Open in IMG/M
3300016357\|Ga0182032_10975528	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	723	Open in IMG/M
3300016371\|Ga0182034_10293095	All Organisms → cellular organisms → Bacteria → Proteobacteria	1301	Open in IMG/M
3300016387\|Ga0182040_10306442	All Organisms → cellular organisms → Bacteria	1216	Open in IMG/M
3300016387\|Ga0182040_10443509	All Organisms → cellular organisms → Bacteria	1027	Open in IMG/M
3300016387\|Ga0182040_10622161	All Organisms → cellular organisms → Bacteria	876	Open in IMG/M
3300016404\|Ga0182037_10065348	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	2495	Open in IMG/M
3300016422\|Ga0182039_10310363	All Organisms → cellular organisms → Bacteria → Proteobacteria	1310	Open in IMG/M
3300016422\|Ga0182039_10882354	All Organisms → cellular organisms → Bacteria	798	Open in IMG/M
3300016422\|Ga0182039_11605353	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	594	Open in IMG/M
3300016422\|Ga0182039_12173245	All Organisms → cellular organisms → Bacteria	512	Open in IMG/M
3300016445\|Ga0182038_10461218	All Organisms → cellular organisms → Bacteria	1077	Open in IMG/M
3300021372\|Ga0213877_10329048	All Organisms → cellular organisms → Bacteria	523	Open in IMG/M
3300021560\|Ga0126371_10306876	Not Available	1715	Open in IMG/M
3300021560\|Ga0126371_10430868	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1463	Open in IMG/M
3300021560\|Ga0126371_11255371	All Organisms → cellular organisms → Bacteria	876	Open in IMG/M
3300021560\|Ga0126371_11391775	All Organisms → cellular organisms → Bacteria → Proteobacteria	833	Open in IMG/M
3300021560\|Ga0126371_11551497	All Organisms → cellular organisms → Bacteria → Proteobacteria	789	Open in IMG/M
3300021560\|Ga0126371_13351975	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300021560\|Ga0126371_13358747	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300026862\|Ga0207724_1019900	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
3300027787\|Ga0209074_10280357	All Organisms → cellular organisms → Bacteria	659	Open in IMG/M
3300031058\|Ga0308189_10199449	All Organisms → cellular organisms → Bacteria	724	Open in IMG/M
3300031545\|Ga0318541_10180343	All Organisms → cellular organisms → Bacteria	1166	Open in IMG/M
3300031545\|Ga0318541_10401732	All Organisms → cellular organisms → Bacteria	766	Open in IMG/M
3300031545\|Ga0318541_10848873	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300031561\|Ga0318528_10346632	All Organisms → cellular organisms → Bacteria	797	Open in IMG/M
3300031564\|Ga0318573_10774884	All Organisms → cellular organisms → Bacteria	515	Open in IMG/M
3300031573\|Ga0310915_10991461	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300031640\|Ga0318555_10110534	All Organisms → cellular organisms → Bacteria	1454	Open in IMG/M
3300031640\|Ga0318555_10792746	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
3300031668\|Ga0318542_10129811	All Organisms → cellular organisms → Bacteria	1239	Open in IMG/M
3300031668\|Ga0318542_10167316	All Organisms → cellular organisms → Bacteria	1098	Open in IMG/M
3300031679\|Ga0318561_10047357	All Organisms → cellular organisms → Bacteria	2139	Open in IMG/M
3300031679\|Ga0318561_10221714	All Organisms → cellular organisms → Bacteria	1028	Open in IMG/M
3300031679\|Ga0318561_10284652	All Organisms → cellular organisms → Bacteria	903	Open in IMG/M
3300031679\|Ga0318561_10473188	All Organisms → cellular organisms → Bacteria	690	Open in IMG/M
3300031680\|Ga0318574_10770283	Not Available	564	Open in IMG/M
3300031681\|Ga0318572_10072903	All Organisms → cellular organisms → Bacteria	1894	Open in IMG/M
3300031682\|Ga0318560_10078455	All Organisms → cellular organisms → Bacteria	1679	Open in IMG/M
3300031719\|Ga0306917_10487486	All Organisms → cellular organisms → Bacteria	967	Open in IMG/M
3300031724\|Ga0318500_10401683	All Organisms → cellular organisms → Bacteria	681	Open in IMG/M
3300031751\|Ga0318494_10515880	All Organisms → cellular organisms → Bacteria	697	Open in IMG/M
3300031751\|Ga0318494_10862956	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300031765\|Ga0318554_10320078	All Organisms → cellular organisms → Bacteria	882	Open in IMG/M
3300031770\|Ga0318521_10210855	All Organisms → cellular organisms → Bacteria	1124	Open in IMG/M
3300031770\|Ga0318521_10649857	All Organisms → cellular organisms → Bacteria	639	Open in IMG/M
3300031780\|Ga0318508_1109319	All Organisms → cellular organisms → Bacteria	771	Open in IMG/M
3300031795\|Ga0318557_10427026	All Organisms → cellular organisms → Bacteria	609	Open in IMG/M
3300031796\|Ga0318576_10608269	All Organisms → cellular organisms → Bacteria	515	Open in IMG/M
3300031797\|Ga0318550_10191465	All Organisms → cellular organisms → Bacteria	988	Open in IMG/M
3300031821\|Ga0318567_10601519	All Organisms → cellular organisms → Bacteria	624	Open in IMG/M
3300031833\|Ga0310917_10463430	All Organisms → cellular organisms → Bacteria	862	Open in IMG/M
3300031879\|Ga0306919_11105156	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300031880\|Ga0318544_10322953	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	599	Open in IMG/M
3300031896\|Ga0318551_10256109	All Organisms → cellular organisms → Bacteria	979	Open in IMG/M
3300031896\|Ga0318551_10849502	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300031897\|Ga0318520_10422128	All Organisms → cellular organisms → Bacteria	817	Open in IMG/M
3300031910\|Ga0306923_10608764	All Organisms → cellular organisms → Bacteria	1225	Open in IMG/M
3300031912\|Ga0306921_10178163	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2491	Open in IMG/M
3300031912\|Ga0306921_11606439	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	706	Open in IMG/M
3300031942\|Ga0310916_10190942	All Organisms → cellular organisms → Bacteria	1710	Open in IMG/M
3300031942\|Ga0310916_10342263	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → unclassified Methylocapsa → Methylocapsa sp. S129	1270	Open in IMG/M
3300031942\|Ga0310916_10754141	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	822	Open in IMG/M
3300031942\|Ga0310916_10973657	All Organisms → cellular organisms → Bacteria	709	Open in IMG/M
3300031946\|Ga0310910_10708588	Not Available	795	Open in IMG/M
3300031946\|Ga0310910_10883750	All Organisms → cellular organisms → Bacteria	701	Open in IMG/M
3300031946\|Ga0310910_10980798	All Organisms → cellular organisms → Bacteria	661	Open in IMG/M
3300031947\|Ga0310909_11397936	Not Available	560	Open in IMG/M
3300031954\|Ga0306926_10957104	All Organisms → cellular organisms → Bacteria	1022	Open in IMG/M
3300031954\|Ga0306926_11021965	All Organisms → cellular organisms → Bacteria	982	Open in IMG/M
3300031954\|Ga0306926_11877483	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	677	Open in IMG/M
3300031954\|Ga0306926_12977147	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300032001\|Ga0306922_12319336	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300032010\|Ga0318569_10402185	Not Available	638	Open in IMG/M
3300032035\|Ga0310911_10638441	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300032041\|Ga0318549_10336504	All Organisms → cellular organisms → Bacteria	680	Open in IMG/M
3300032043\|Ga0318556_10690353	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300032055\|Ga0318575_10353346	All Organisms → cellular organisms → Bacteria	745	Open in IMG/M
3300032059\|Ga0318533_10762091	All Organisms → cellular organisms → Bacteria	710	Open in IMG/M
3300032064\|Ga0318510_10175606	All Organisms → cellular organisms → Bacteria	856	Open in IMG/M
3300032066\|Ga0318514_10682382	All Organisms → cellular organisms → Bacteria	546	Open in IMG/M
3300032076\|Ga0306924_12638231	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	500	Open in IMG/M
3300032261\|Ga0306920_100332681	All Organisms → cellular organisms → Bacteria	2261	Open in IMG/M
3300032261\|Ga0306920_100999340	All Organisms → cellular organisms → Bacteria → Proteobacteria	1218	Open in IMG/M
3300032261\|Ga0306920_101907390	All Organisms → cellular organisms → Bacteria	835	Open in IMG/M
3300032261\|Ga0306920_102470816	All Organisms → cellular organisms → Bacteria	715	Open in IMG/M
3300032261\|Ga0306920_103239757	All Organisms → cellular organisms → Bacteria	608	Open in IMG/M
3300032261\|Ga0306920_103274255	All Organisms → cellular organisms → Bacteria → Proteobacteria	604	Open in IMG/M
3300032261\|Ga0306920_103664693	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300033289\|Ga0310914_10558262	All Organisms → cellular organisms → Bacteria	1034	Open in IMG/M
3300033289\|Ga0310914_10886730	All Organisms → cellular organisms → Bacteria	791	Open in IMG/M
3300033289\|Ga0310914_10970703	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	750	Open in IMG/M
3300033290\|Ga0318519_10626911	All Organisms → cellular organisms → Bacteria	654	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	95.52%
Loam	Environmental → Terrestrial → Soil → Loam	4.48%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	70.90%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.13%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.73%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.49%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.75%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	39.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	31.34%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	20.90%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.73%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.49%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.75%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.75%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.75%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.75%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300021372	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R01	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300026862	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 31 (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066395_104522221	3300004633	Tropical Forest Soil	MERRILVERKVRARPVVVGRVIRQQMTEVPFPQHHDMVEALASDRADQPFDMRFATVSVA
Ga0070709_104717301	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MERSILVERKVRAHTVVVGGVIRQQMAEVPFPQHHDMVEALASDRANQPFNMTV
Ga0066903_1015670233	3300005764	Tropical Forest Soil	MEWSILVERKVRAHPVVVGRVIRQQMTEVLFPQHHDMVEALA
Ga0066903_1023647353	3300005764	Tropical Forest Soil	MERSILVERKVRTRPVVVGRVIRQQMPEVSFPQHHDMVEALASDRADQPFDMPVLPRRAWRDRPVANAHG
Ga0066903_1070990732	3300005764	Tropical Forest Soil	MERRILVERKVRARPVVVGRVIRQQMTEVPFPQHHDMVEALASDRADQPFDMPVLPR
Ga0079222_111729273	3300006755	Agricultural Soil	MERRILVECKVRAHPIVVGRVIRQQMAEMPFAQDHDMVEALASDRA
Ga0126373_106728173	3300010048	Tropical Forest Soil	MERRILVERKVRAHPIVVGGLIRQHMPEVPLPQYQDMVEALASDRA
Ga0126373_117827251	3300010048	Tropical Forest Soil	MQRSILVERKVRAHPVVVGRVIRQQMAEVPFPQHHDMVEALASD
Ga0126370_100704081	3300010358	Tropical Forest Soil	MERSIPVERKVRAHAVVVGRVIRQQMTEVPFPQHHDMVETLASDRSDQP
Ga0126370_123033391	3300010358	Tropical Forest Soil	MERGILVKRKLRAHPIVIGGVIRQQMTKVPFPQHYDMVEALASDRANQPFDMPVLPR*
Ga0126372_107458882	3300010360	Tropical Forest Soil	MERSILVERKVRAHPVVVGRVIRQQMTEVLFPQHHDMVEALASDRADQPFDMTVLPRCAWRDRPVANAHGLQPPGDRGAIRGVAVT
Ga0126378_101619364	3300010361	Tropical Forest Soil	MERSILVECNVRAHPVVVGGVIRQQMAEVPFPQHHDMVEALAS
Ga0126378_121171532	3300010361	Tropical Forest Soil	MERSILAERKVRAHPVVIGRVIRQQMTEVPFPQHHH
Ga0126379_131736922	3300010366	Tropical Forest Soil	MERSIPVERKVRAHPVVVGRVIRQQMTEVPFPQHHDMVE
Ga0126379_135413291	3300010366	Tropical Forest Soil	MERSIPVERKVRAHPVVVGRVIRQQMTEVPFPQHHDM
Ga0126381_1007695241	3300010376	Tropical Forest Soil	MERSIPVERKVRAHPVVVGRVIRQQMTEVPFPQHHDMVETLASDRSD
Ga0126381_1012080782	3300010376	Tropical Forest Soil	MERSILAERKVRAHPVVVGRVIRQQMTEVPFPQHHDMVETLASDRAN
Ga0126381_1017120271	3300010376	Tropical Forest Soil	MERSIAVERKVRAHPVVGGRVIRQQMTEVPFPQHHDMVETLASD
Ga0126381_1019108281	3300010376	Tropical Forest Soil	MEWSILVERKVRAHPVVVGRVIRQQMTEVRFPQHHHMVETFASD
Ga0126381_1021912842	3300010376	Tropical Forest Soil	VPTDYAIRRSIPVERKVRAHPVVVGRVIRQQMTEVPFPQHHDMVET
Ga0126381_1025806471	3300010376	Tropical Forest Soil	MEQSIPVERKVRAHAVVVGRVIRQQMTEVPFPQHHDMVE
Ga0126381_1031923192	3300010376	Tropical Forest Soil	MERRIPVERKVRAHPVVVGRVIRQQMTEVPFPQHHDMVET
Ga0126381_1039304311	3300010376	Tropical Forest Soil	MERSILVERKVRAHPVVVGRVIRQQMTEVPFPQHHDM
Ga0126381_1043933622	3300010376	Tropical Forest Soil	MERSIPVERKVRAHPVVVGRVIRQQMTEVPFPQHHDMVEALA
Ga0126381_1048790881	3300010376	Tropical Forest Soil	PDCLRRSMERSILVERKVRAHPVVVGRVIRQQMTEVLFPQHHDMVEALASDRAWAGRLP*
Ga0126383_113770812	3300010398	Tropical Forest Soil	MERSIPVERKVRAHPVVVGRVIRQQMTEVPFPQHHDMVETLASDRSDQPFDMPVLP
Ga0137371_114505341	3300012356	Vadose Zone Soil	MERSILVERKVRAHPVVVGGVIRQQMAEVSFPQHHDMVEALAPNR
Ga0126369_113340082	3300012971	Tropical Forest Soil	MERRILVERKLRTHPVVVGRVIRQQMTEVPFPQHHDMVEALASDRADQPFDMRFATVSVA
Ga0182036_100559163	3300016270	Soil	MEWRILVECKVRAHPIVVGGVIRQQMAEVPFPQHYDMAEAL
Ga0182036_101312263	3300016270	Soil	MEWRILVECKVRAHPVVVGGVIRQQMAEMPFPQHHDMLESLASDHADQPFNMTILPWRAWRDRPV
Ga0182036_101512471	3300016270	Soil	MERSILVERKVRALAIVLGGALRQQMAEVSFPQHHDMVEALASDRADQPFYMTV
Ga0182041_105719701	3300016294	Soil	MERRILVECKVRAHLIVVGGVIRQQMAEVPFPQHHDMVEALASD
Ga0182041_112995271	3300016294	Soil	RAMERRILVECKVRAHPIVVGGVIRQQMAEVPVPQHHDVVEALASDRADQPFNMTVLPR
Ga0182041_119720652	3300016294	Soil	MERRILVECKVRAHPNVVGGIIRQQMAEVPLPQHHDMVKALASDRANQPFNMT
Ga0182033_108827201	3300016319	Soil	MERGILVERNVRARPIVVGGVIRQQMTEVPFPQHYDMVEALASDRADQPFDMPVLPR
Ga0182033_119161461	3300016319	Soil	MERRILVECEVRAHPIVVGGVIRQQMAEMPFPQHYDMVEAL
Ga0182033_121828561	3300016319	Soil	EWRILVECKVRAHPIVVGGVIRQQMAEVPFPQHYDMAEALASDRAGQPFNMPVLPR
Ga0182035_105076643	3300016341	Soil	MERSILVERKVRAHPVVVGRVIRQQMAEVPFPQHHDMVETLASDRANQPF
Ga0182035_112076211	3300016341	Soil	MERSIFVERKVRAHPIVVGRVIRQQMTEVPFPQDHNVVEALASDRADQPFDMPVLP
Ga0182032_103492421	3300016357	Soil	MEWRILVECKVRAHPIVVGGVIRQQMAEVPFLQHHDMVEALASDRANQPFNMTVLPR
Ga0182032_103617811	3300016357	Soil	MERRILVECEVRAHPILVGGVIRQQMAEMPFPQHYDMVEALASDRANQPSNMTVLPR
Ga0182032_109755281	3300016357	Soil	MERRILVECKVCAHPIVVGGVIRQQMAEVPFPQHHDMVEALASDRANQP
Ga0182034_102930952	3300016371	Soil	MEAAYFLVERKVRAHPIVVGGVIRQQMAEVPFPQHHDMV
Ga0182040_103064423	3300016387	Soil	MERRILVECKVRAHPIVVGGVIRQQMAEVPFPQHHDVVEALASDRADQPFNMT
Ga0182040_104435092	3300016387	Soil	MERRILVECKVRAHPIVVGGVIRQQMAEVPFPQHHDVVEALASDRADQPFNMTVL
Ga0182040_106221611	3300016387	Soil	MEWRILVECKVRAHPIVVGGVIRQQMAEVPFPQHHDMVEALASDRAN
Ga0182037_100653482	3300016404	Soil	MEWRILVECKVRAHPIVVGGVIRQQMAEVPFPQHHDMVEALAS
Ga0182039_103103631	3300016422	Soil	MERRILVECKVRAHPIIVGGVIRQQMAEVPFPQHHDVVEALASDRANQPFNMTVLPR
Ga0182039_108823541	3300016422	Soil	MERRILVECKVRAHPIVVGGVIRQQMAEVPFPQHHDVVE
Ga0182039_116053532	3300016422	Soil	MKRRILVECKVRAHPIVVGGVIRQQMAQVPFPQHHDMVEALASDRAN
Ga0182039_121732451	3300016422	Soil	MERRILAECKVRAHPIVVGGVIRQQMAEVPFPQHHDVVEALA
Ga0182038_104612182	3300016445	Soil	MERRILVECKVRAHPIVVGGVIRQQMAEVPFPQHHDMVE
Ga0213877_103290482	3300021372	Bulk Soil	RSILVERKVRTCFIIVAGVIRQQAAKVGFPQHHDTVEAVASNRADQPLNMTVLPEANGA
Ga0126371_103068763	3300021560	Tropical Forest Soil	MPGRAMERSILVERKVRAHPVVVGRVIRQQMTKVPFPQ
Ga0126371_104308681	3300021560	Tropical Forest Soil	MERSIPVERKVRAHPVVVGRVIRQQMTEVPFPQHHDMV
Ga0126371_112553711	3300021560	Tropical Forest Soil	MERSILVERKVRAHPVVVGRVIRQQMTEVPFPQHHHMVET
Ga0126371_113917752	3300021560	Tropical Forest Soil	MERSILVERKVRAHPVVVGRVIRQQMTEVPFPQHHHMVETLASDRANQPFD
Ga0126371_115514971	3300021560	Tropical Forest Soil	MEWSILVERKVRAHPVVVGHVIRQQMAEVPFPQHHDMV
Ga0126371_133519752	3300021560	Tropical Forest Soil	MERSILVERQVRAHPVVVGRVIRQQMTEVPFPQHHDMVETLASDRANQPF
Ga0126371_133587471	3300021560	Tropical Forest Soil	MERSIFVERKVRADPIVVGGVIHQQMAEVPFPQYHDMVETLASDRADQPFDMTVLPR
Ga0207724_10199002	3300026862	Tropical Forest Soil	MERCILVECEVRAHPIVVGGVIRQQMAEVPFPQHHDMVEALASDRADQPFDMPVLPRRAW
Ga0209074_102803573	3300027787	Agricultural Soil	MERRILVECKVRAHPIVVGRVIRQQMAEMPFAQDHDM
Ga0308189_101994491	3300031058	Soil	MERSILVKRKVRAHPIVVGGVIRQQMAEVPFPQHHYVVE
Ga0318541_101803432	3300031545	Soil	MERGILVECKVRAHAIVVGGVIRQQMAEVPFPQHHDVVEALAIDPTCRPLLQ
Ga0318541_104017321	3300031545	Soil	MERRILVECKVCALPIVVGGVIIQQMTEVPFPQHHDMVEALASDRANQPFDMPVLPR
Ga0318541_108488731	3300031545	Soil	MERRILVECKVRAHPIVVGGVIRQQMAEVPFPQHHDVVEALASDRADQPFNMTV
Ga0318528_103466322	3300031561	Soil	MERRILVECKVRAHPIVVGGVIRQQMAEMPFPQHHDMVEALASDRANQPFNMTVLPR
Ga0318573_107748842	3300031564	Soil	MEWRILVECKVRAHPIVVGGVIRQQMAEVPFPQHHDMVEALASDRADQPFNMTVLPR
Ga0310915_109914611	3300031573	Soil	MERRILVECKVRAHPIVVGGVIRQQMAEMPSPQHYDM
Ga0318555_101105341	3300031640	Soil	MEGRILVECKVRAHPIVVGGIIRQQMAEVPFPQHRDMVEALASD
Ga0318555_107927462	3300031640	Soil	MERRILVECKVRAHPNVVGGIIRQQMAEVPLPQHHDMV
Ga0318542_101298113	3300031668	Soil	MERRILVECKMRAHPIVVGGVIRQQMAEMPFPQHHDVVEALASDRANQPFNMTVLPR
Ga0318542_101673163	3300031668	Soil	MEWRILVECKVRAHPIVVGGVIRQQMAEVPFPQHHDMVEA
Ga0318561_100473571	3300031679	Soil	MERRILVECKVRAHPIIVGGVIRQQMAEVPFPQHHDVVEALA
Ga0318561_102217141	3300031679	Soil	MERRILVECKVRAHPIVVGGVIRQQMAEVPFSWDWW
Ga0318561_102846521	3300031679	Soil	MERRILVECKVRAHPIVVGGVIRQQMAEVPFPQHHDVVEALASDRANQPFNMTV
Ga0318561_104731881	3300031679	Soil	LRRSMERRILVERKVRAHPVVVGRVIRQQMTEVSFPQHHDMVEALASDRADRPFDMPVLP
Ga0318574_107702831	3300031680	Soil	VRDVRPGVLVERIECKVRAHPIGVGGVIRQQMAEVPFPQHHD
Ga0318572_100729035	3300031681	Soil	MEWRILVECKVRAHPIVVGGVIRQQMAEVPFPQHHDMVEALASDRANQPFNMTVLPR
Ga0318560_100784551	3300031682	Soil	MEWRILVECKVRAHPIVVGGVIRQQMAEVPFLQHHDMVEAL
Ga0306917_104874863	3300031719	Soil	MERRILVECKVRAHPVIVGGVIRQQMAQVSLSQYHD
Ga0318500_104016831	3300031724	Soil	MERSILVERKVRAHPVVVGRVIRQQMTEVLFPQHHDMVEALASDRANQPFNMTVVPW
Ga0318494_105158802	3300031751	Soil	MEWRILVECKVRAHPIVVGGVIRQQMAGVPFPQHHDMVEALASDRANQPFNM
Ga0318494_108629561	3300031751	Soil	MERRILVECKVRAHPIVVGGVIRQQMAEVPFPQHHDMVEALASD
Ga0318554_103200781	3300031765	Soil	MEWRILVECKVRAHPIVVGGVIRQQMAEVPFPQHHDMVEALASDRANQPFNMTVL
Ga0318521_102108551	3300031770	Soil	MEWRILVECKVRAHPIVVGGVIRQQMAEVPFPQHHDMVEALASDRANQPFNMT
Ga0318521_106498571	3300031770	Soil	MERRILVECKVCALPIVVGGVIIQQMTEVPFPQHHDMVEALASDRANQPFDMP
Ga0318508_11093192	3300031780	Soil	MERRILVECKVRAHPIVVGGVVRQQMAEVPFPQHHDMVEALASDRADQPFNMTVLPR
Ga0318557_104270262	3300031795	Soil	MERRILVECKVRAHLIVVGGVIRQQMAEVPFPQHHDMVEA
Ga0318576_106082692	3300031796	Soil	MERRILVECKVRAHPIVVGGVIRQQMAEVPFPQHHDVVEARASDRANQPFNMTV
Ga0318550_101914653	3300031797	Soil	MERRILVECKMRAHPIVVGGVIRQQMAEVPFPQHHDVVEALASDRA
Ga0318567_106015191	3300031821	Soil	MERRILVECKVRAHPIVVGGVIRQQMAEVPFPQHHDVVEALASDRANQPFNMTVLPR
Ga0310917_104634302	3300031833	Soil	MEWRILVECKVRAHPIVVGGVIRQQMAEVPFPQHYDMAEALASDRAGQPFNMPVLPR
Ga0306919_111051562	3300031879	Soil	MERGILFERKVGAHPIVVVGVIRQQMAEVPFPQHHNMVEALASDRADQPFNMTVLPW
Ga0318544_103229531	3300031880	Soil	MERRILVECKVRAHPIVVGGVIRQQMAEVPFPQHHGMV
Ga0318551_102561092	3300031896	Soil	MEWRILVECKVRAHPIVVGGVVRQQMAEVPFPQHHDM
Ga0318551_108495021	3300031896	Soil	MERSILVERKVRAHPIVVGRVIRQQMTEVPFPQHHDMVEALASDRADQPFDMPVLPQ
Ga0318520_104221281	3300031897	Soil	MERGILVERNVRARPIVVGGVIRQQMTEVPFPQHYDMVEALASDR
Ga0306923_106087643	3300031910	Soil	MERRILVECKVRAHPIVVGGVIRQQMAQVPFPQHHDVVEALA
Ga0306921_101781634	3300031912	Soil	MEWRILVECKVRVHPIVVGGVIRHQMAEVPFPQHYDMVEALASDR
Ga0306921_116064392	3300031912	Soil	MERRILVECKVRAHPIVVGGVIRQQMAEVPFPQLHDMVEALASDRADQPFNMTVLPR
Ga0310916_101909424	3300031942	Soil	MERRILVECKVRAHLIVVGGVIRQQMAEVLFPQHHDMVEA
Ga0310916_103422631	3300031942	Soil	MERRILAECKVRAHPIVVGGVIRQQMAEVPFPQHHD
Ga0310916_107541413	3300031942	Soil	MERRILVECEVRAHPILVGGVIRQQMAEMPFPQHYD
Ga0310916_109736571	3300031942	Soil	MEWRILVECKVRVHPIVVGGVIRHQMAEVPFPQHYDMVEALASDRGNQPS
Ga0310910_107085882	3300031946	Soil	MERRILVECKVRAHPIVVGGLIRQQMAEVPFPQHHDMVEALASDRANQPF
Ga0310910_108837501	3300031946	Soil	MEWRILVECKVRAHPIVVGGVIRQQMAEVPFPQHHDMVE
Ga0310910_109807981	3300031946	Soil	MERRILVECKVCALPIVVGGVIRQQMTEVPFPQHHDMVEALASDRANQPFDMPVLPR
Ga0310909_113979361	3300031947	Soil	VRDVRPGVLVERIECKVRAHPIGVGGVIRQQMAEVPFPQHHDMVE
Ga0306926_109571043	3300031954	Soil	MERRILVECKVRAHPIVVGGGIRQQMAEVPFPQHH
Ga0306926_110219652	3300031954	Soil	MERRILVECEVRAYRIVVGRVIPQQMAEVPFPQHH
Ga0306926_118774832	3300031954	Soil	MERRILVECKVRAHLIVVGGVIRQQMAEVPFPQHHDVVEALASDRADQPFNMTLA
Ga0306926_129771471	3300031954	Soil	MERRILVECKVRAHPIVVGGVIRQQMAEVPFPQHHDVV
Ga0306922_123193362	3300032001	Soil	MERSILVERKVRARPVVVIGVIRQQMAKVPFPQHHDMVE
Ga0318569_104021852	3300032010	Soil	MEWRILVECKVRAHPIVVGGVIRQQMAEVPFPQHH
Ga0310911_106384411	3300032035	Soil	MERCILVECKVRAHPIVVGGVIRQQMAEVGFEISL
Ga0318549_103365041	3300032041	Soil	MERCILVECKVRVHPIVVGGVIRHQMAEVPFPQHYDMVEALASDRGNQPSNMTVLPR
Ga0318556_106903531	3300032043	Soil	MERRILVECKVRAHPIVVGGVIRQQMAEVPFPQHHDVVEALASDRANQPFNM
Ga0318575_103533461	3300032055	Soil	MERRILVECKVRAHPIVVGGVIRQQMAEVPFPQHHDVVEAR
Ga0318533_107620912	3300032059	Soil	LVECKVRVHPIVVGGVIRHQMAEVPFPQHYDMVEALASDRGNQPSNMTVLPR
Ga0318510_101756061	3300032064	Soil	MERSILVERKVRAHPVVVGRVIRQQMTEVLFPQHHDMVEALASDRADQPFDMPILPR
Ga0318514_106823821	3300032066	Soil	MERRILVECKVRAHPIVVGGVVRRQMAKVPFPQHHDMVEALASD
Ga0306924_126382312	3300032076	Soil	MERRILVECKVRAHPIVVGGVIRQQVAEVPFPQHHDMVEALAAD
Ga0306920_1003326811	3300032261	Soil	MERCILVECKVRAHPIVVGGVIRQQMAEVPFPQHHDMVEALASDR
Ga0306920_1009993401	3300032261	Soil	MERRILVECKVRAHPIVVGGVIRQQMAEMPFPQHHDMVEALASDRANQPFNMTVL
Ga0306920_1019073901	3300032261	Soil	MERSILVERKVRTHPIVVGRVIRQQMTEVPFPQHH
Ga0306920_1024708162	3300032261	Soil	TPDCLRRSMERRILVECKVRAHPIVVGGVIRQQVAEVPFPQHHDMVEALAADRADQPL
Ga0306920_1032397572	3300032261	Soil	MERGILVECNVRAHAIVVGGVIRQQMAEVPFPQYHDMVEALASDRANQPFNITVLPR
Ga0306920_1032742552	3300032261	Soil	DWPHGSMERRILVECKVRAHPIIVGGVIRQQMAEVPFPQHHDVVEALASDRANQPFNMTVLPR
Ga0306920_1036646931	3300032261	Soil	MERSILVERKVCAHPVVVGRVIRQQMTEVPFPQHHHMVETLASD
Ga0310914_105582623	3300033289	Soil	MERRILAECKVRAHPIVVGGVIRQQMAEVPFPQHHDVVEALASD
Ga0310914_108867302	3300033289	Soil	MERRILVECNVRAHPVVVGGVIRQQMAEVPFPQHHDMV
Ga0310914_109707031	3300033289	Soil	MEWSIFVECKVRAHPIVVGGVIRQQMAEVPFPQHYDMAEALASDRAG
Ga0318519_106269111	3300033290	Soil	MERRILVECKVRAHLIVVGGVIRQQMAEVPFPQHHDVVEALASDRADQPFNM

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F058900

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences