Metagenome / Metatranscriptome Family F058343

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F058343
Family Type	Metagenome / Metatranscriptome
Number of Sequences	135
Average Sequence Length	58 residues
Representative Sequence	VTWYTRENAAERAGVEPSYLVRLVDLGILAPEEPDRFSPGDVRRVLMAKSLEDAGIPLE
Number of Associated Samples	119
Number of Associated Scaffolds	135

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	91.11 %
% of genes near scaffold ends (potentially truncated)	94.81 %
% of genes from short scaffolds (< 2000 bps)	92.59 %
Associated GOLD sequencing projects	118
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.81

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (88.148 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (20.000 % of family members)
Environment Ontology (ENVO)	Unclassified (27.407 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.370 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 37.93% β-sheet: 4.60% Coil/Unstructured: 57.47%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.81
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.81
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SCOP family	SCOP domain	Representative PDB	TM-score
a.6.1.3: DNA-binding N-terminal domain of transcription activators	d1q06a_	1q06	0.83911
a.6.1.3: DNA-binding N-terminal domain of transcription activators	d1r8da_	1r8d	0.83085
a.6.1.0: automated matches	d2zhga_	2zhg	0.82944
a.6.1.0: automated matches	d5gpea_	5gpe	0.82615
a.6.1.3: DNA-binding N-terminal domain of transcription activators	d1r8ea1	1r8e	0.8167

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 135 Family Scaffolds
PF01243	Putative_PNPOx	5.19
PF05639	Pup	4.44
PF00561	Abhydrolase_1	3.70
PF06224	HTH_42	2.22
PF13474	SnoaL_3	2.22
PF12680	SnoaL_2	2.22
PF00583	Acetyltransf_1	2.22
PF01402	RHH_1	2.22
PF06305	LapA_dom	1.48
PF12681	Glyoxalase_2	1.48
PF01850	PIN	1.48
PF00355	Rieske	1.48
PF05899	Cupin_3	1.48
PF08281	Sigma70_r4_2	1.48
PF02567	PhzC-PhzF	1.48
PF00196	GerE	1.48
PF12441	CopG_antitoxin	0.74
PF12867	DinB_2	0.74
PF12697	Abhydrolase_6	0.74
PF08240	ADH_N	0.74
PF00881	Nitroreductase	0.74
PF08241	Methyltransf_11	0.74
PF00753	Lactamase_B	0.74
PF01872	RibD_C	0.74
PF13424	TPR_12	0.74
PF13508	Acetyltransf_7	0.74
PF13560	HTH_31	0.74
PF04525	LOR	0.74
PF00248	Aldo_ket_red	0.74
PF00211	Guanylate_cyc	0.74
PF00266	Aminotran_5	0.74
PF02463	SMC_N	0.74
PF06123	CreD	0.74
PF04134	DCC1-like	0.74
PF06983	3-dmu-9_3-mt	0.74
PF01041	DegT_DnrJ_EryC1	0.74
PF00903	Glyoxalase	0.74
PF05362	Lon_C	0.74
PF07991	IlvN	0.74
PF00293	NUDIX	0.74

COG ID	Name	Functional Category	% Frequency in 135 Family Scaffolds
COG3214	DNA glycosylase YcaQ, repair of DNA interstrand crosslinks	Replication, recombination and repair [L]	2.22
COG0384	Predicted epimerase YddE/YHI9, PhzF superfamily	General function prediction only [R]	1.48
COG3771	Lipopolysaccharide assembly protein YciS/LapA, DUF1049 family	Cell wall/membrane/envelope biogenesis [M]	1.48
COG0059	Ketol-acid reductoisomerase	Amino acid transport and metabolism [E]	1.48
COG1750	Predicted archaeal serine protease, S18 family	General function prediction only [R]	0.74
COG4894	Putative phospholipid scramblase YxjI, Tubby2 superfamily	Lipid transport and metabolism [I]	0.74
COG4452	Inner membrane protein CreD involved in colicin E2 resistance	Defense mechanisms [V]	0.74
COG3865	Glyoxalase superfamily enzyme, possible 3-demethylubiquinone-9 3-methyltransferase	General function prediction only [R]	0.74
COG3480	Predicted secreted protein YlbL, contains PDZ domain	Signal transduction mechanisms [T]	0.74
COG3011	Predicted thiol-disulfide oxidoreductase YuxK, DCC family	General function prediction only [R]	0.74
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	0.74
COG2764	Zn-dependent glyoxalase, PhnB family	Energy production and conversion [C]	0.74
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.74
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.74
COG1104	Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family	Amino acid transport and metabolism [E]	0.74
COG1067	Predicted ATP-dependent protease	Posttranslational modification, protein turnover, chaperones [O]	0.74
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	0.74
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	0.74
COG0499	S-adenosylhomocysteine hydrolase	Coenzyme transport and metabolism [H]	0.74
COG0466	ATP-dependent Lon protease, bacterial type	Posttranslational modification, protein turnover, chaperones [O]	0.74
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	0.74
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	0.74
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.74

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	88.89 %
Unclassified	root	N/A	11.11 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	88.89 %
Unclassified	root	N/A	11.11 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	88.15 %
Unclassified	root	N/A	11.11 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.74 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	74.07 %
Unclassified	root	N/A	11.11 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.48 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.74 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	37.04 %
Unclassified	root	N/A	11.11 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2.22 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.74 %
Deinococcus-Thermus	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus	0.74 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.74 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.74 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	31.85 %
Unclassified	root	N/A	11.11 %
Dehalococcoidia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	0.74 %
Deinococci	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci	0.74 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.74 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.74 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.74 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	15.56 %
Unclassified	root	N/A	11.11 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	2.22 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	1.48 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	1.48 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.74 %
Bradymonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Bradymonadales	0.74 %
unclassified Dehalococcoidia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia	0.74 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.74 %
Thermales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales	0.74 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.74 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.74 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	15.56 %
Unclassified	root	N/A	11.11 %
Corynebacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Corynebacteriaceae	1.48 %
Micrococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae	1.48 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1.48 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	0.74 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.74 %
Bradymonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Bradymonadales → Bradymonadaceae	0.74 %
Thermaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales → Thermaceae	0.74 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.74 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.74 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.74 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	15.56 %
Unclassified	root	N/A	11.11 %
Saccharopolyspora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharopolyspora	1.48 %
Arthrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter	1.48 %
Corynebacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Corynebacteriaceae → Corynebacterium	1.48 %
Persicimonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Bradymonadales → Bradymonadaceae → Persicimonas	0.74 %
Thermus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales → Thermaceae → Thermus	0.74 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	0.74 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.74 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.74 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.74 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.74 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	15.56 %
Unclassified	root	N/A	11.11 %
Arthrobacter cavernae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → Arthrobacter cavernae	1.48 %
Saccharopolyspora phatthalungensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharopolyspora → Saccharopolyspora phatthalungensis	1.48 %
Persicimonas caeni	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Bradymonadales → Bradymonadaceae → Persicimonas → Persicimonas caeni	0.74 %
Corynebacterium glyciniphilum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Corynebacteriaceae → Corynebacterium → Corynebacterium glyciniphilum	0.74 %
Thermus igniterrae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales → Thermaceae → Thermus → Thermus igniterrae	0.74 %
Corynebacterium otitidis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Corynebacteriaceae → Corynebacterium → Corynebacterium otitidis	0.74 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	0.74 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.74 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.74 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.74 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.74 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2199352025\|deepsgr__Contig_168190	All Organisms → cellular organisms → Bacteria → Terrabacteria group	562	Open in IMG/M
3300000881\|JGI10215J12807_1168629	All Organisms → cellular organisms → Bacteria	886	Open in IMG/M
3300000890\|JGI11643J12802_11788989	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1067	Open in IMG/M
3300000956\|JGI10216J12902_101858853	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	587	Open in IMG/M
3300001431\|F14TB_100991645	All Organisms → cellular organisms → Bacteria → Terrabacteria group	535	Open in IMG/M
3300002243\|C687J29039_10114261	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → Arthrobacter cavernae	985	Open in IMG/M
3300003541\|JGI20214J51650_11001617	All Organisms → cellular organisms → Bacteria → Terrabacteria group	583	Open in IMG/M
3300004009\|Ga0055437_10245016	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	585	Open in IMG/M
3300004061\|Ga0055487_10048732	All Organisms → cellular organisms → Bacteria → Terrabacteria group	681	Open in IMG/M
3300004114\|Ga0062593_101384431	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	751	Open in IMG/M
3300004156\|Ga0062589_100099387	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1846	Open in IMG/M
3300004157\|Ga0062590_100028459	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2784	Open in IMG/M
3300004480\|Ga0062592_100060997	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2117	Open in IMG/M
3300004480\|Ga0062592_100133902	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1622	Open in IMG/M
3300005093\|Ga0062594_100839325	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	857	Open in IMG/M
3300005093\|Ga0062594_102342727	All Organisms → cellular organisms → Bacteria → Terrabacteria group	582	Open in IMG/M
3300005093\|Ga0062594_103299118	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Corynebacteriaceae → Corynebacterium → Corynebacterium glyciniphilum	507	Open in IMG/M
3300005168\|Ga0066809_10092540	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	730	Open in IMG/M
3300005172\|Ga0066683_10064042	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2189	Open in IMG/M
3300005180\|Ga0066685_11033001	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	541	Open in IMG/M
3300005332\|Ga0066388_108120877	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Corynebacteriaceae → Corynebacterium → Corynebacterium otitidis	524	Open in IMG/M
3300005345\|Ga0070692_10821969	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	636	Open in IMG/M
3300005441\|Ga0070700_100805515	All Organisms → cellular organisms → Bacteria	757	Open in IMG/M
3300005447\|Ga0066689_10498116	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales → Thermaceae → Thermus → Thermus igniterrae	768	Open in IMG/M
3300005518\|Ga0070699_100983167	All Organisms → cellular organisms → Bacteria	774	Open in IMG/M
3300005518\|Ga0070699_101936985	All Organisms → cellular organisms → Bacteria	539	Open in IMG/M
3300005526\|Ga0073909_10074120	All Organisms → cellular organisms → Bacteria	1293	Open in IMG/M
3300005536\|Ga0070697_100201940	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1690	Open in IMG/M
3300005536\|Ga0070697_100270651	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1456	Open in IMG/M
3300005552\|Ga0066701_10823903	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	552	Open in IMG/M
3300005558\|Ga0066698_10006308	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6102	Open in IMG/M
3300005764\|Ga0066903_107699787	All Organisms → cellular organisms → Bacteria → Terrabacteria group	554	Open in IMG/M
3300006175\|Ga0070712_100662886	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	887	Open in IMG/M
3300006577\|Ga0074050_11250048	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	571	Open in IMG/M
3300006578\|Ga0074059_11989232	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	609	Open in IMG/M
3300006581\|Ga0074048_10062406	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2513	Open in IMG/M
3300006796\|Ga0066665_11271651	All Organisms → cellular organisms → Bacteria → Terrabacteria group	564	Open in IMG/M
3300006953\|Ga0074063_13549708	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	545	Open in IMG/M
3300007076\|Ga0075435_101926071	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300009012\|Ga0066710_102634776	All Organisms → cellular organisms → Bacteria → Terrabacteria group	721	Open in IMG/M
3300009012\|Ga0066710_104888849	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	501	Open in IMG/M
3300009090\|Ga0099827_11750929	All Organisms → cellular organisms → Bacteria → Terrabacteria group	542	Open in IMG/M
3300009094\|Ga0111539_11194769	All Organisms → cellular organisms → Bacteria → Terrabacteria group	883	Open in IMG/M
3300009553\|Ga0105249_12753457	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	564	Open in IMG/M
3300009817\|Ga0105062_1120855	All Organisms → cellular organisms → Bacteria → Terrabacteria group	531	Open in IMG/M
3300010362\|Ga0126377_11822473	All Organisms → cellular organisms → Archaea	684	Open in IMG/M
3300010396\|Ga0134126_11801531	All Organisms → cellular organisms → Bacteria → Terrabacteria group	671	Open in IMG/M
3300010399\|Ga0134127_10178026	All Organisms → cellular organisms → Bacteria	1958	Open in IMG/M
3300010399\|Ga0134127_11470646	Not Available	753	Open in IMG/M
3300010403\|Ga0134123_10977186	Not Available	860	Open in IMG/M
3300012201\|Ga0137365_10164286	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1665	Open in IMG/M
3300012201\|Ga0137365_10848266	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	667	Open in IMG/M
3300012208\|Ga0137376_11100890	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharopolyspora → Saccharopolyspora phatthalungensis	679	Open in IMG/M
3300012210\|Ga0137378_11789850	All Organisms → cellular organisms → Bacteria → Terrabacteria group	518	Open in IMG/M
3300012351\|Ga0137386_10310854	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1134	Open in IMG/M
3300012353\|Ga0137367_10248952	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1278	Open in IMG/M
3300012353\|Ga0137367_11141611	All Organisms → cellular organisms → Bacteria → Terrabacteria group	524	Open in IMG/M
3300012355\|Ga0137369_10240912	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1373	Open in IMG/M
3300012355\|Ga0137369_11085646	All Organisms → cellular organisms → Bacteria → Terrabacteria group	524	Open in IMG/M
3300012358\|Ga0137368_10167446	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1601	Open in IMG/M
3300012358\|Ga0137368_10295058	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1099	Open in IMG/M
3300012532\|Ga0137373_10155308	All Organisms → cellular organisms → Bacteria	1926	Open in IMG/M
3300012904\|Ga0157282_10190079	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	656	Open in IMG/M
3300012957\|Ga0164303_11049710	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	584	Open in IMG/M
3300012964\|Ga0153916_10866564	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Bradymonadales → Bradymonadaceae → Persicimonas → Persicimonas caeni	984	Open in IMG/M
3300014266\|Ga0075359_1168398	All Organisms → cellular organisms → Bacteria → Terrabacteria group	504	Open in IMG/M
3300014307\|Ga0075304_1031210	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1106	Open in IMG/M
3300015371\|Ga0132258_10714013	All Organisms → cellular organisms → Bacteria	2524	Open in IMG/M
3300015372\|Ga0132256_103642560	All Organisms → cellular organisms → Bacteria → Terrabacteria group	518	Open in IMG/M
3300015374\|Ga0132255_103525715	All Organisms → cellular organisms → Bacteria → Terrabacteria group	666	Open in IMG/M
3300015374\|Ga0132255_104985595	Not Available	562	Open in IMG/M
3300017656\|Ga0134112_10519013	All Organisms → cellular organisms → Bacteria → Terrabacteria group	507	Open in IMG/M
3300017959\|Ga0187779_11171820	All Organisms → cellular organisms → Bacteria	539	Open in IMG/M
3300017973\|Ga0187780_10141336	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1667	Open in IMG/M
3300017974\|Ga0187777_11068545	All Organisms → cellular organisms → Bacteria → Terrabacteria group	586	Open in IMG/M
3300018058\|Ga0187766_10423781	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	884	Open in IMG/M
3300018075\|Ga0184632_10304929	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	689	Open in IMG/M
3300018468\|Ga0066662_12065122	All Organisms → cellular organisms → Bacteria → Terrabacteria group	597	Open in IMG/M
3300018481\|Ga0190271_13128718	All Organisms → cellular organisms → Bacteria → Terrabacteria group	555	Open in IMG/M
3300018481\|Ga0190271_13801910	All Organisms → cellular organisms → Bacteria → Terrabacteria group	505	Open in IMG/M
3300018482\|Ga0066669_12265816	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	517	Open in IMG/M
3300019356\|Ga0173481_10574524	All Organisms → cellular organisms → Bacteria → Terrabacteria group	588	Open in IMG/M
3300019361\|Ga0173482_10580040	All Organisms → cellular organisms → Bacteria → Terrabacteria group	560	Open in IMG/M
3300019867\|Ga0193704_1081331	Not Available	593	Open in IMG/M
3300020016\|Ga0193696_1095898	All Organisms → cellular organisms → Bacteria → Terrabacteria group	764	Open in IMG/M
3300021080\|Ga0210382_10502466	All Organisms → cellular organisms → Bacteria → Terrabacteria group	537	Open in IMG/M
3300025289\|Ga0209002_10023522	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	4482	Open in IMG/M
3300025319\|Ga0209520_10225925	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → Arthrobacter cavernae	1169	Open in IMG/M
3300025322\|Ga0209641_10049045	All Organisms → cellular organisms → Bacteria	3263	Open in IMG/M
3300025325\|Ga0209341_10772734	All Organisms → cellular organisms → Bacteria → Terrabacteria group	731	Open in IMG/M
3300025922\|Ga0207646_11175157	All Organisms → cellular organisms → Bacteria → Terrabacteria group	673	Open in IMG/M
3300025936\|Ga0207670_11065243	All Organisms → cellular organisms → Bacteria	682	Open in IMG/M
3300025945\|Ga0207679_12083569	All Organisms → cellular organisms → Bacteria → Terrabacteria group	516	Open in IMG/M
3300025980\|Ga0210137_1066843	All Organisms → cellular organisms → Bacteria → Terrabacteria group	556	Open in IMG/M
3300026088\|Ga0207641_12399569	All Organisms → cellular organisms → Bacteria → Terrabacteria group	526	Open in IMG/M
3300026116\|Ga0207674_10132416	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2456	Open in IMG/M
3300026530\|Ga0209807_1117262	Not Available	1103	Open in IMG/M
3300026550\|Ga0209474_10659203	All Organisms → cellular organisms → Bacteria → Terrabacteria group	539	Open in IMG/M
3300027703\|Ga0207862_1263223	Not Available	504	Open in IMG/M
3300027915\|Ga0209069_10893390	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	538	Open in IMG/M
(restricted) 3300027995\|Ga0233418_10110279	All Organisms → cellular organisms → Bacteria → Terrabacteria group	840	Open in IMG/M
3300028145\|Ga0247663_1109982	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	509	Open in IMG/M
3300028597\|Ga0247820_10433771	Not Available	885	Open in IMG/M
3300028711\|Ga0307293_10001133	All Organisms → cellular organisms → Bacteria	6561	Open in IMG/M
3300028712\|Ga0307285_10039095	Not Available	1158	Open in IMG/M
3300028713\|Ga0307303_10050554	All Organisms → cellular organisms → Bacteria	879	Open in IMG/M
3300028716\|Ga0307311_10052407	Not Available	1086	Open in IMG/M
3300028718\|Ga0307307_10192289	Not Available	644	Open in IMG/M
3300028771\|Ga0307320_10108751	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1057	Open in IMG/M
3300028796\|Ga0307287_10067978	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1326	Open in IMG/M
3300028803\|Ga0307281_10324390	Not Available	578	Open in IMG/M
3300028807\|Ga0307305_10239328	Not Available	830	Open in IMG/M
3300028814\|Ga0307302_10079719	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1549	Open in IMG/M
3300028814\|Ga0307302_10703320	All Organisms → cellular organisms → Bacteria → Terrabacteria group	502	Open in IMG/M
3300028819\|Ga0307296_10214090	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1046	Open in IMG/M
3300028819\|Ga0307296_10635457	All Organisms → cellular organisms → Bacteria	584	Open in IMG/M
3300028828\|Ga0307312_10677778	All Organisms → cellular organisms → Bacteria	683	Open in IMG/M
3300028872\|Ga0307314_10134965	Not Available	702	Open in IMG/M
3300028876\|Ga0307286_10038485	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1598	Open in IMG/M
3300028878\|Ga0307278_10445793	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharopolyspora → Saccharopolyspora phatthalungensis	567	Open in IMG/M
3300028884\|Ga0307308_10168526	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1049	Open in IMG/M
3300030336\|Ga0247826_10626706	All Organisms → cellular organisms → Bacteria → Terrabacteria group	828	Open in IMG/M
3300031226\|Ga0307497_10599027	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300031562\|Ga0310886_10877378	Not Available	569	Open in IMG/M
3300031670\|Ga0307374_10261419	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1143	Open in IMG/M
3300031740\|Ga0307468_101397065	All Organisms → cellular organisms → Bacteria → Terrabacteria group	643	Open in IMG/M
3300031740\|Ga0307468_101581548	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	611	Open in IMG/M
3300031949\|Ga0214473_12213638	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	529	Open in IMG/M
3300032074\|Ga0308173_10517507	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1071	Open in IMG/M
3300033004\|Ga0335084_11179999	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	766	Open in IMG/M
3300033407\|Ga0214472_10962931	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	757	Open in IMG/M
3300033482\|Ga0316627_100350952	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1240	Open in IMG/M
3300033550\|Ga0247829_10241859	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	1449	Open in IMG/M
3300033551\|Ga0247830_10625341	All Organisms → cellular organisms → Bacteria → Terrabacteria group	853	Open in IMG/M
3300034090\|Ga0326723_0110388	Not Available	1193	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	92.59%
Host-Associated	Host-Associated	7.41%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	85.93%
Plants	Host-Associated → Plants	7.41%
Aquatic	Environmental → Aquatic	6.67%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	85.19%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.70%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.70%
Freshwater	Environmental → Aquatic → Freshwater	2.22%
Marine	Environmental → Aquatic → Marine	2.96%
Sediment	Environmental → Aquatic → Sediment	1.48%
Peat	Environmental → Terrestrial → Peat	0.74%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	65.93%
Loam	Environmental → Terrestrial → Soil → Loam	11.85%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.22%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.22%
Wetlands	Environmental → Aquatic → Marine → Wetlands	2.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.48%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.48%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.48%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.74%
Lake	Environmental → Aquatic → Freshwater → Lake	0.74%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.74%
Sand	Environmental → Terrestrial → Soil → Sand	0.74%
Clay	Environmental → Terrestrial → Soil → Clay	0.74%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.74%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	40.74%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	11.11%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.67%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.93%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	5.93%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.44%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	2.22%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.22%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.22%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	2.22%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.22%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.22%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.48%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	1.48%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.48%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.48%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.74%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.74%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.74%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	0.74%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.74%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.74%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	0.74%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.74%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	20.00%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	9.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	8.15%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	5.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.44%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	2.22%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.22%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	2.22%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.22%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.96%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.96%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.96%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	1.48%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.48%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	1.48%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.48%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.74%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.74%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.74%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	0.74%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.74%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.74%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.74%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.74%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.74%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.74%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.74%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.74%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	0.74%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.74%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.74%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.74%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.74%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.74%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.74%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2199352025	Soil microbial communities from Rothamsted, UK, for project Deep Soil - DEEP SOIL	Environmental	Open in IMG/M
3300000881	Soil microbial communities from Great Prairies - Wisconsin Restored Prairie soil	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300002243	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_2	Environmental	Open in IMG/M
3300003541	Wetland sediment microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site B2 Bulk	Environmental	Open in IMG/M
3300004009	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D2	Environmental	Open in IMG/M
3300004061	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_ThreeSqC_D2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005168	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006577	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006578	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006581	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009817	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012904	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S029-104C-1	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012964	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 4 metaG	Environmental	Open in IMG/M
3300014266	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_TuleB_D1	Environmental	Open in IMG/M
3300014307	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_CattailNLA_D1	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019867	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m1	Environmental	Open in IMG/M
3300020016	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m1	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300025289	Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 2	Environmental	Open in IMG/M
3300025319	Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 1	Environmental	Open in IMG/M
3300025322	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_1 (SPAdes)	Environmental	Open in IMG/M
3300025325	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_2 (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025980	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_TuleC_D2 (SPAdes)	Environmental	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026530	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300027703	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300027995 (restricted)	Sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Sediment_Towuti_2014_1_MG	Environmental	Open in IMG/M
3300028145	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK04	Environmental	Open in IMG/M
3300028597	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028712	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_139	Environmental	Open in IMG/M
3300028713	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_184	Environmental	Open in IMG/M
3300028716	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198	Environmental	Open in IMG/M
3300028718	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028803	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028872	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_204	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031670	Soil microbial communities from Risofladan, Vaasa, Finland - OX-3	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033407	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT140D175	Environmental	Open in IMG/M
3300033482	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D1_C	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M
3300034090	Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
deepsgr_02822330	2199352025	Soil	VTSYPHDDCAERAGVEPSYLVRLVDLGIITPEDDRFSPGDVRRVLMAKSLEGAGIPLEGVAA
JGI10215J12807_11686293	3300000881	Soil	VTSYAHDDAAERAGVEPPYLVRLVDLGILTPGEDDRFSPGDVRRVLMAKSLE
JGI11643J12802_117889891	3300000890	Soil	VTWYTRENAAERAGVEPSYLVRLVDLGILAPADPDRFSPGDVRRALMANSLEGAGIPLEGVAAGIQSGALSLSFLDAASYERF
JGI10216J12902_1018588531	3300000956	Soil	VTGYSREDAAERVGVEPSYLVRLVDLGIIVPEESDRFSPGDVRRVLLARSLEDA
F14TB_1009916452	3300001431	Soil	VTWYSREVAAERFGVEPSYLARLVDLGILVPEGSDRFSPGDVRRVLLARSLEDAGISLEGLTIDSARSLSSFLS*
C687J29039_101142612	3300002243	Soil	VTWYTRENAAERAGVEPSYLARLVDLAILAPEEPDRFSPGDVRRVLMAKSLEDAGIPLEGVADAIGRGA
JGI20214J51650_110016171	3300003541	Wetland	VTTYSAQDAAARAGVEPGYLVRLVDLGIIAPDATGFSPGDVRRAMMANSLEEAGIPLQGVGAAIRSGAISL
Ga0055437_102450162	3300004009	Natural And Restored Wetlands	VTRYGRDGAAERAGVDGSYLDGLVDLGIVTPDAEGRFSDGDVRRVAIAKSLEGAGIPLDAVTD
Ga0055487_100487321	3300004061	Natural And Restored Wetlands	MSMALHTRAEAAERAGVEPGFLDRLVEIGIIQPERPDRFSAGDVRRLLMAQSLEEAGIRLDDVGAAV
Ga0062593_1013844311	3300004114	Soil	VSWYTRANAAEQPGVEPSYLVRLVDLGILAPADPDGFSPGDVRRALMANSLEGAGIPLEGVAAGKQNGALLRAHIA*
Ga0062589_1000993872	3300004156	Soil	VTWYTRANAAEQPGVEPSYLVRLVDLGILAPADPDGFSPGDVRRALMANSLEGAGIPLEGVAAGKQNGALLRAHIA*
Ga0062590_1000284593	3300004157	Soil	VTWYTRANAAEQPGVEPSYLVRLVDLGILAPADPDGFSPGDVRRALMANSLEGAGIPLEGVAAGMQNGALLRAHIA*
Ga0062592_1000609972	3300004480	Soil	VSWYTRANAAEQPGVEPSYLVRLVDLGILAPADPDGFSPGDVRRALMANSLEGAGIPLEGVAAGMQNGALLRAHIA*
Ga0062592_1001339026	3300004480	Soil	VTSYPHEGAAERAGVEPSYLVRLVDLGIIAPGEDDRFSPGDVR
Ga0062594_1008393251	3300005093	Soil	VTSYPHEGAAERAGVEPSYLVRLVDLGIIAPGEDDRFSPGDVRRVLMAKSLE
Ga0062594_1023427271	3300005093	Soil	MYSCEEAAERVGVEPSYLDRLVELGILASDEPDRFSGGDVRRVL
Ga0062594_1032991181	3300005093	Soil	VTWHTRKDAAERVGVEPSYLVRLVDLGILAPDDSDRFSPGDVRRVWMAKSLEDAGIPLEGLAAGIKSGALSFSFLDAA
Ga0066809_100925401	3300005168	Soil	MTSFAREDAAALAGVEPDYVVRLMDLGILVPEDGDRFSPGDVRRVVMAKSFEDAGIGLEDVATAIRRGAVSLRFLD
Ga0066683_100640421	3300005172	Soil	VTWYSRDNAAEQVGVEPSYLVRLVDLGILSREDPDRFSPGDVRRVMMAKSLEDAGIPLEGLAA
Ga0066685_110330011	3300005180	Soil	VTWYSRENAAERAEVEPNYLVRLVDLGILTCEEPDRFSPGDVRRVLMAK
Ga0066388_1081208771	3300005332	Tropical Forest Soil	VTWYSRDEAAERAGVDPSYLAQLVELGILNPDEPDHFSPGDVRRVRMARSIEDAAIPLDGVGAAIRQGRISLGFLDTPA
Ga0070692_108219691	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	VTWYAGEDVAERTGVEPSYVIRLVELGILVPEQPERFSAGDVRRVLMARSLEDAGIPLDDVAAAV
Ga0070700_1008055153	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	VTSYAHDDAAERAGVEPPYLVRLVDLGILTPGEDDRFSPGDVRRVLMAKSLED
Ga0066689_104981163	3300005447	Soil	VTWYSRENAAERAGVEPNYLVRLVDLGILAPEERDRFSPGD
Ga0070699_1009831672	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	VTSHPRDDAAERAGVEPSYLVRLVDLGIITPQEDDRFSPGDVRRVLMAKSLED
Ga0070699_1019369852	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	VIRYSRVNAAERAGVEPDYLVRLVKLGILTPDESDRFSPGDVRRVLMARSIE
Ga0073909_100741202	3300005526	Surface Soil	VTWYTRANAAERAGVERSYLVRLVDLGILSPADPDRFSPGDVGRAPMANSLEGAGIPLEGVAAGMQNGALLRAHIA*
Ga0070697_1002019401	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	VTWYTRQDAAERVGVEPSYLVRLVDLGILAPEEPDRFSPGDVR
Ga0070697_1002706513	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	VTWYSSEDAAELAGVEPSYLFRLVDLGILATVEPDRFSPGDVRRVLMAKSLEDAGIPLDGVAAALQTGALSLAFLDAPSY
Ga0066701_108239031	3300005552	Soil	VTWYSRQNAAERAGVEPNYLARMVDLAILAPEEPDRFSPGDVRRV
Ga0066698_100063081	3300005558	Soil	VIWYSREDAAERVGVEPSYLVRLVDLGILAPEEPDRFSPGDVRRVLMAKSLEDAGIPL
Ga0066903_1076997871	3300005764	Tropical Forest Soil	MDPSRLPAVTSYSREEAAERAGVELAFLARLVDLSILVPKEADRFTPGDVRRVLLADSLGHAG
Ga0070712_1006628862	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	VTWYSREAAAERVGVEPSYLGRLVDLGILSPEGPDRFSPGDVRRVLMTKSLEDAGIPLEGLAAGIQSGALSF
Ga0074050_112500482	3300006577	Soil	MTWYAGEDAAERAGVEPSYLVRLVDLGILAPEQPDGFSPGDVRRVLMARSLEDAGIALEDVAAGIRQ
Ga0074059_119892321	3300006578	Soil	MTWYSREDAAQRAGVEPGYLAQLVDIGVLTPEEPDRFSPGDVRRVLMARSLEGAGM
Ga0074048_100624061	3300006581	Soil	VTWYPRDDAAERAGVEPSYLVRLVDLGILAPEERDRFSP
Ga0066665_112716512	3300006796	Soil	VTWYSRENAAERAGVEPNYLVRLVDLGILTPEEPDCFSPGDVRRVLMAKSLEDAGIPLD
Ga0074063_135497082	3300006953	Soil	VTWYAGEDVAERTGVEPSYVVRLVELGILVPKESDRFSAGDVRRVLMARSLE
Ga0075435_1019260712	3300007076	Populus Rhizosphere	VTRYSGEEAAGRAGVQPSFLARLVDLGILVPEAGRFSAGDVRRVLMVKSLEDAGIPLEGVAAAIQQGTLSLDFFDAASY
Ga0066710_1026347762	3300009012	Grasslands Soil	VTWYSRENAAERAGVEPRYLVRLVDLGVLVPEEPDRFSPGDVRRVLMTKSLEDAGV
Ga0066710_1048888491	3300009012	Grasslands Soil	VRNRQRYPHDVAWYSGEDAAGRAGVEPSHLVRLVDLGILTPDTPDRYSDGDVRRVLMAKSLEGAGIPLDAVAAATQRGAL
Ga0099827_117509292	3300009090	Vadose Zone Soil	VTWYTRENAAKRVGVEPSYLVRLVDLGILAPEEPDRFSPGDVRRVLMAKSLEDAGIPLEGVADAIQRGALSLSFMDAP
Ga0111539_111947691	3300009094	Populus Rhizosphere	MYSCEEAAERVGVEPSYLDRLVELGILALHEPDRFSGGDVRRVLMCRSLEDAGIPLEAVGAAIQGGTLSLAF
Ga0105249_127534572	3300009553	Switchgrass Rhizosphere	MTSYGREQAAERAGVEPSYVDRLVELGILAPDKSERFSSGDVRRVL
Ga0105062_11208552	3300009817	Groundwater Sand	LYSREDAAERAGVESPFLARLVDLGILAPHEPDGFSPADVRRVLLANSLEQA
Ga0126377_118224731	3300010362	Tropical Forest Soil	VTRFSREAVAERAGVESRFVVRLEELGILAPENDGRFSSSDVRRVLLAKSLEDAGIPLNEVV
Ga0134126_118015311	3300010396	Terrestrial Soil	MTSYSAADVAERAGVEPAFLDRIVELGIVTPAEPDRFSPGDVR
Ga0134127_101780261	3300010399	Terrestrial Soil	VTSYAHDDAAERAGVEPPYLVRLVDLGILTPGEDDRFSPGDVRRVLMAKSLEDAGIPLE
Ga0134127_114706462	3300010399	Terrestrial Soil	VTWHTRKDAAERVGVEPSYLVRLVDLGILAPDDSDRFSPGDVRRAWMAKSLEDAGIPLEGLAAG
Ga0134123_109771862	3300010403	Terrestrial Soil	VTWHTRKDAAERVGVEPSYLVRLVDLGILAPDDSDRFSPGDVRRVWMAKSLEDAGIPLEGLAAGI
Ga0137365_101642861	3300012201	Vadose Zone Soil	VAWYSGEDAAERAGVEPSYLVRLFDLGILTPETPDRYSDGDVRRVLMATSLEGAGI
Ga0137365_108482661	3300012201	Vadose Zone Soil	MTHGPTAWYSREKAAERAGVEPDYLVRLVDLGVLAPEEPDRFSPGDVRRVLMAKSLE
Ga0137376_111008902	3300012208	Vadose Zone Soil	VTWYSREDAAERAGVEPYYLVRLVDLAILAPEEPDRFSPGDVRRVL
Ga0137378_117898501	3300012210	Vadose Zone Soil	VTWYSREEAAERVGVEPSYLFRLVGLGILAPEEPDRFSPGDVRRVLMAKSLDDAGIPLDGVAAAIQ
Ga0137386_103108543	3300012351	Vadose Zone Soil	VAWYSREDAAGRVGVEPNYIVRLADLGILAPEERDRFSPGDVRRVLMAKSLEDAGIPLEGVAAAIQRGA
Ga0137367_102489523	3300012353	Vadose Zone Soil	LPNVTWYSREDAAERVGVEPSYLARLVDLGILVPEESDRFSPGDVRRVLMAKSLEDAGIP
Ga0137367_111416112	3300012353	Vadose Zone Soil	VTWYSRENAAERVGVEPSYLVRLVDLGILSREEPDRFSPGDVRRVLMARSLEDAGIPLESVG
Ga0137369_102409123	3300012355	Vadose Zone Soil	VTWYSCENAAERVGVEPSYLVRLGELGILAPEEPDRFSSGDVRRVLMARSLEDAGIPLEGVGAAIQRGTLSLAFLDAASYER
Ga0137369_110856462	3300012355	Vadose Zone Soil	MTWYPREDAAERAGVEPSYLVRLVDLGIITPEERDRFSPGDVRRVLMAK
Ga0137368_101674461	3300012358	Vadose Zone Soil	VTWYSCENAAERVGVEPSYLVRLVDLGILAPEEPDRFSSGDVRRVLMARSLEDAGIPLEGVGAAIQRGTLSLAFLDAASYER
Ga0137368_102950582	3300012358	Vadose Zone Soil	VTWYSRENAAERAGVEPSYLVQLVDLGILAPQEPDRFSPGDVRR
Ga0137373_101553081	3300012532	Vadose Zone Soil	VTWYSRENAAERAGVEPSYLVQLVDLGILAPQEPDRFSPGDVRRVLMAKSLE
Ga0157282_101900792	3300012904	Soil	MTWYGREQAAERAGVGPSYVDRLVELGVLAPDEQERFSPGDV
Ga0164303_110497102	3300012957	Soil	VTWYSREAAAERVGVEPSYLGRLVDLGILSPEEPDRFSPGDVRRVLMTKSLEDAGIPLDGLA
Ga0153916_108665641	3300012964	Freshwater Wetlands	MTWYSREDAAQRAGVAPTYLVRLLDLGILAGSDPDRFSAGD
Ga0075359_11683981	3300014266	Natural And Restored Wetlands	VTTYSAQDAAARAGVEPGYLVRLVDLGIIAPDATGFSPGDVRRAMMANSLE
Ga0075304_10312103	3300014307	Natural And Restored Wetlands	VTWCSRDEAADRAGVEPDYLLRLMDLGILAPEDADRFSPGD
Ga0132258_107140131	3300015371	Arabidopsis Rhizosphere	LTDYSQEDVADRAGVDPAYVDGLVDLGILTPEEPDRFSTGD
Ga0132256_1036425601	3300015372	Arabidopsis Rhizosphere	VTTYTCEEAAERVGVEPSYLDRLVELGILAPDEPDRF
Ga0132255_1035257151	3300015374	Arabidopsis Rhizosphere	VTAYPHDDAAERAGVEPSYLVRLVDLGIISPQEDDRYSPGDVRRVLMAKS
Ga0132255_1049855951	3300015374	Arabidopsis Rhizosphere	MTWYPREEAAERAGVEPSYLDRLVDVGILRPEDPGHWSPADVRRALMSRSLDAAGIPLDEVAAGIRSGAL
Ga0134112_105190131	3300017656	Grasslands Soil	VTSYSRENAAVRAGVEPSYLARLVDLGIIACEELDRFSPGDVRRALMAKSLEDAGIPLEGVA
Ga0187779_111718202	3300017959	Tropical Peatland	MSAYGPEAAAERAGVEPAYVDRLVDLGIVAPSASDGFSPGDVRRVLMVRSLDDAGIPLDG
Ga0187780_101413363	3300017973	Tropical Peatland	VTSYSRGEAAERAGVEPGYVVRLVDLGIVGPVEPNRFSPGDVRR
Ga0187777_110685451	3300017974	Tropical Peatland	MPAYASVEAAERAGVEPAYLVRLVDLGIVVPDEKGRFSRGDVRRTLMA
Ga0187766_104237812	3300018058	Tropical Peatland	VTSRSREGAAERAGVEPAYLDRLLDLGILSPAGAERFSDGDVRRVMMAKSLEDAGIPLDRVAAALQQGAITL
Ga0184632_103049291	3300018075	Groundwater Sediment	VTWYSREDAAERVGVEPSYLARLVDLGILVPDEADRFSPGDVRRVLLARSLEDAGISLEE
Ga0066662_120651221	3300018468	Grasslands Soil	VTWYTREDAAERVGVEPSYLVRLVDLGILAPEEPDRFSPGDVRRVLMAKSLEDAGIQLEGVAAGIQSGALSLSFLDAAS
Ga0190271_131287183	3300018481	Soil	VATYTCEEAAERIGVEPSYLDRLVELGILAPDEPDRFSGGDVRRVLICRSL
Ga0190271_138019101	3300018481	Soil	VTLYSCEEAAERVGVEPSYLDRLVELGILTPEEPDRFSGGD
Ga0066669_122658162	3300018482	Grasslands Soil	VRNRQRYPHDVAWYSGEDAAGRAGVEPSHLVRLVDLGILTPDTPDRYSDGDVRRVLMAKSLEGAGIPLDAVA
Ga0173481_105745241	3300019356	Soil	MYSCEEAAERVGVEPSYLDRLVELGILALHDPDRYSGGDV
Ga0173482_105800402	3300019361	Soil	VSWYTRANAAEQPGVEPSYLVRLVDLGILAPADPDGFSPGDVRRALMANSLEGAGIPLEGVAAGMQNGALLR
Ga0193704_10813311	3300019867	Soil	VTWYSRENAAERVGVEPSYLVRLVDLGILAPVDPDRFSPGDVRRVLMAKSLEDAGIPLEGVAAGI
Ga0193696_10958981	3300020016	Soil	VIEYSREDAAERGGVELHYLRRLVDLGIIAPQGPDRFSPGDVRRVLMARSLEDAGIPLE
Ga0210382_105024662	3300021080	Groundwater Sediment	VTWYAGEDVAERTGVEPSYLVRLVDLGILAPQEPDRFSPGDVRRVLMAKSLEGAGMPLEGVAAGIQSGALSLSFLDAA
Ga0209002_100235224	3300025289	Soil	VNRYSREDAAERAGVEPSYLVRLMDLAILAPGEPDRFSPGDVRRVLMAKSLEDAGIPLEGVADAIRRGALSL
Ga0209520_102259253	3300025319	Soil	VTWYTRENAAERAGVEPSYLVRLMDLGILAPEEPDRFSPGDVRRVLMAKSLE
Ga0209641_100490458	3300025322	Soil	VTWYTRENAAERAGVEPSYLVRLVDLGILAPEEPDRFSPGDVRRVLMAKSLEDAGIPLE
Ga0209341_107727341	3300025325	Soil	VTRYSREDAAERAGVEPSYLVRLMDLGILAPEEPDRFSPGDVRRVLMAKS
Ga0207646_111751571	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MTWYSREEAAERAAVEPSYLDRLVGLGIFAPEEPDRFSPGDVRRVVMAKSLEDAGIPLDGVAAAIQRRVLSLSFLDATSF
Ga0207670_110652431	3300025936	Switchgrass Rhizosphere	MTSYGREQAAERAGVQPSYIDRLVELGILAPDEPERFSAGDVRRVLMAKSFADAGIPLESVAD
Ga0207679_120835691	3300025945	Corn Rhizosphere	MYSCEEAAERVGVEPSYLDRLVELGILALHEPDRFS
Ga0210137_10668432	3300025980	Natural And Restored Wetlands	VTTYSAQDAAARAGVEPGYLVRLVDLGIIAPDATGFSPGDVRRAMMANSLEEAGI
Ga0207641_123995691	3300026088	Switchgrass Rhizosphere	VTSYPHEGAAERAGVEPSYLVRLVDLGIIAPGEDDRFSPGDVRRVLMAKSLEDAGIPLEGVAAAIQRGALSL
Ga0207674_101324161	3300026116	Corn Rhizosphere	VTSYPHEGAAERAGVEPSYLVRLVDLGIIAPGEDDRFSPGDVRRVLMAKSLEDAGIPLEGVAAAIQRG
Ga0209807_11172621	3300026530	Soil	VTWYSRENAAERAGVEPNYLVRLVDLGILTPEEPDCFSPGDVRR
Ga0209474_106592031	3300026550	Soil	VTWYSRENAAERAGVEPNYLVRLVDLGILTPEEPDCFSPGDVRRVLMAKSLEDAGIPLDGVAAAIQRGALSLTF
Ga0207862_12632231	3300027703	Tropical Forest Soil	MTYSRDEAAERAGVEPGYVERLVDLGVLSPNEPGRFSPG
Ga0209069_108933901	3300027915	Watersheds	VARYGRGDAAERAGVDPSYLVRLMDLGILAPEEPDRFSPGDLRRVLLAKSLEDAGIR
(restricted) Ga0233418_101102791	3300027995	Sediment	VTRYSSADAAERAGVEASYLDQLVDLGILAPQEPDRFSP
Ga0247663_11099822	3300028145	Soil	VTWYAGDDVARQTGVDADYLVRLVDLGILAPQQPDRFVPGDVRRVQLARSLEDA
Ga0247820_104337712	3300028597	Soil	VTAYPHDDAAERAGVEPSYLVRLVDLGIISPQEDDRYSPGDVRRVLMAKSLEDAGIPLD
Ga0307293_100011338	3300028711	Soil	VTRYSREIAAERVGVEPSYLVRLVDLGILAPVDPDRFSPGDVRRVLMAKSLEDVGIPLEGVAAGISSGALSLSFFDAASYERFA
Ga0307285_100390953	3300028712	Soil	VTRYSREIAAERVGVEPSYLVRLVDLGILAPVDPDRFSPGDVRRVLMAKSLEDAGIPLEGVAAGIKSGALS
Ga0307303_100505541	3300028713	Soil	MTWYGREQAAERAGVEPSYVDRLVELGVLAPDEPERFSPG
Ga0307311_100524073	3300028716	Soil	VTRYSREIAAERAGVEPSYLVRLVDLGILAPVDPDRFSPGDVRRVLMAKSLEDVGIPLEG
Ga0307307_101922891	3300028718	Soil	VTRYSREIAAERVGVEPSYLVRLVDLGILAPVDPDRFSPGDVRRVLMAKSLEDVG
Ga0307320_101087511	3300028771	Soil	VTSYPHDDAAERAGIEPSYLVRLVDLAIITPEEDDRFSPGDVRRVLMA
Ga0307287_100679781	3300028796	Soil	VTSYPHDDAAERAGIEPSYLVRLVDLAIITPEEDDRFSPGDVRRVLMAKSLEDAGIPLEGVAAAIQRGA
Ga0307281_103243902	3300028803	Soil	MAWYPRDDAAERAGVEPSYLVRLVDLGILSPEEDDHFSPGDVRRVLMAKS
Ga0307305_102393281	3300028807	Soil	VTWYSRENAAERVGVEPSYLVRLVDLGILAPVDPDRFSPGDVRRVLMAKS
Ga0307302_100797191	3300028814	Soil	VTWYPRDDAAERAGVEPSYLVRLVDLGILDPEEDDRFSPGDVRRVLMAKS
Ga0307302_107033201	3300028814	Soil	VVRYSGEDAAERAGVEPSYLVRLVDLGILTPGTPDRYSDGDVRRVLM
Ga0307296_102140902	3300028819	Soil	VTWYPRDDAAERAGVEPSYLVRLVDLGILDPEEDDRFSPGDVRRVLMAKSLEGAGIPLEGVAAAIQR
Ga0307296_106354572	3300028819	Soil	VTRYAGEDVAERAGVEPSYLVRLVDLGILAPQEPDRFSPGDV
Ga0307312_106777781	3300028828	Soil	VTRYAGEDVAERAGVEPSYLVRLVDLGILAPQEPDRFSPGDVRRVLMARSLEDAGIPLDAVADAI
Ga0307314_101349651	3300028872	Soil	VTWYTRENAAKRAGVEPSYLVRLMDLGILAPADPDRFSPGDVRRALMANSL
Ga0307286_100384854	3300028876	Soil	VTSYPHDDAAERAGIEPSYLVRLVDLAIITPEEDDRFSPGDVRRVLMAKSLEDAGIPLEGVAAAIQRGALSDR
Ga0307278_104457931	3300028878	Soil	VTWYSREDAAERAGVEPYYLVRLVDLAILAPEEPDRFSPGDVRRVLMSKS
Ga0307308_101685263	3300028884	Soil	VTWYSREEAAERVGVEPSYLFRLVGLGILTPEEPDRFSPGDVRRVLMAKSLDDAGIPLDGVA
Ga0247826_106267061	3300030336	Soil	VTSYARDDAAERAGVEPSYLVRLVELGILTLEEGDRFSGGDVRRVLMAKSLEDAGIPLEGVASAIEHGALSL
Ga0307497_105990271	3300031226	Soil	VTSYPHDDAATRAGVEPPYLVRLVDLGIISPGEDDLYSPGDVRRVLMAKSLEDAGIPLE
Ga0310886_108773781	3300031562	Soil	VTSYARDDAAERAGVEPPYLGRLVDLGILTPGGDDRFSPG
Ga0307374_102614192	3300031670	Soil	MTWYPGDEAADRAGVEPAYLARLVDLGILGSEQPDHFSPGDVR
Ga0307468_1013970651	3300031740	Hardwood Forest Soil	VTWYSREDAAERAGVESPFLARLEDLGILAPHEPDRFSPADVRRVLLANSLEQAGAARP
Ga0307468_1015815481	3300031740	Hardwood Forest Soil	MTGFASKDVAGRTGVEPSYVVRLVELGILAPEEPDRFSSGDVRRVLMARS
Ga0214473_122136381	3300031949	Soil	VNWYSREDAAERAGVEPSYLVRLVDLGILAPEEPDRFSPGDVRRVLMAKSLEDAGIPLEGVADAIGR
Ga0308173_105175072	3300032074	Soil	VTWYSREEAAARAGIAPSQLDRFVDLGIVDCAEPGRFSPGDVRRALMARSLEEAEIPLDHVAAAL
Ga0335084_111799991	3300033004	Soil	VTGYAAEDVAELAGVEPRYVVRLTELGILAAAEPGGFSPGDVRRTLMARSLEDA
Ga0214472_109629311	3300033407	Soil	VTWYSRDEAAERVGVEPPYLARLVDLGILVPEEPDRFSPGDVRRVLLARS
Ga0316627_1003509521	3300033482	Soil	MSGYTRDEAAERAGVEPAYVVRLVDLGILAPEEPGRFSPG
Ga0247829_102418591	3300033550	Soil	VTVYPHGDAAERAGVEPSYLVRLVDLGIISPQEDDRYS
Ga0247830_106253413	3300033551	Soil	VISYPHDDAAERAGVEQSYLVRLVDLGILTPEEEGRFSPGDVRRVLMAKSLEDAGIPLEGVAAAIQR
Ga0326723_0110388_1059_1193	3300034090	Peat Soil	MTSYAREDAAERVGVDPSYLIRLMDLGILAPEEPDRLSGGDVRRA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters