Metagenome / Metatranscriptome Family F058229

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F058229
Family Type	Metagenome / Metatranscriptome
Number of Sequences	135
Average Sequence Length	61 residues
Representative Sequence	MNPPPPYDDLDDPSDEFQGDTHAADIVGPTGEEMPIATHAEVHRTPELRGLEARSPRGDRRD
Number of Associated Samples	98
Number of Associated Scaffolds	135

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	27.41 %
% of genes near scaffold ends (potentially truncated)	21.48 %
% of genes from short scaffolds (< 2000 bps)	82.22 %
Associated GOLD sequencing projects	86
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.16

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (84.444 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (17.778 % of family members)
Environment Ontology (ENVO)	Unclassified (57.778 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (69.630 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 3.33% β-sheet: 0.00% Coil/Unstructured: 96.67%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.16
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.16
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 135 Family Scaffolds
PF10604	Polyketide_cyc2	43.70
PF00753	Lactamase_B	3.70
PF01434	Peptidase_M41	2.22
PF03551	PadR	2.22
PF06480	FtsH_ext	2.22
PF08837	DUF1810	1.48
PF00072	Response_reg	0.74
PF00004	AAA	0.74
PF01063	Aminotran_4	0.74
PF00158	Sigma54_activat	0.74
PF06271	RDD	0.74
PF13263	PHP_C	0.74
PF01039	Carboxyl_trans	0.74
PF02482	Ribosomal_S30AE	0.74
PF12840	HTH_20	0.74

COG ID	Name	Functional Category	% Frequency in 135 Family Scaffolds
COG0465	ATP-dependent Zn proteases	Posttranslational modification, protein turnover, chaperones [O]	4.44
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	2.22
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	2.22
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	2.22
COG0115	Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase	Amino acid transport and metabolism [E]	1.48
COG5579	Uncharacterized conserved protein, DUF1810 family	Function unknown [S]	1.48
COG0777	Acetyl-CoA carboxylase beta subunit	Lipid transport and metabolism [I]	0.74
COG0825	Acetyl-CoA carboxylase alpha subunit	Lipid transport and metabolism [I]	0.74
COG1544	Ribosome-associated translation inhibitor RaiA	Translation, ribosomal structure and biogenesis [J]	0.74
COG1714	Uncharacterized membrane protein YckC, RDD family	Function unknown [S]	0.74
COG4799	Acetyl-CoA carboxylase, carboxyltransferase component	Lipid transport and metabolism [I]	0.74

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	84.44 %
Unclassified	root	N/A	15.56 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	84.44 %
Unclassified	root	N/A	15.56 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	84.44 %
Unclassified	root	N/A	15.56 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	42.96 %
Unclassified	root	N/A	15.56 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	8.15 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	15.56 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	10.37 %
Vicinamibacteria	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria	3.70 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.22 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.48 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	15.56 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.37 %
Vicinamibacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales	3.70 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.22 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	15.56 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.37 %
Vicinamibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae	3.70 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.22 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	15.56 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.37 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	3.70 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.22 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	15.56 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.37 %
Luteitalea pratensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	3.70 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.22 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.74 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_101140431	All Organisms → cellular organisms → Bacteria	4706	Open in IMG/M
3300000956\|JGI10216J12902_102336730	All Organisms → cellular organisms → Bacteria	1330	Open in IMG/M
3300000956\|JGI10216J12902_115250447	All Organisms → cellular organisms → Bacteria	957	Open in IMG/M
3300004114\|Ga0062593_102258441	All Organisms → cellular organisms → Bacteria	611	Open in IMG/M
3300004463\|Ga0063356_101685435	All Organisms → cellular organisms → Bacteria → Proteobacteria	947	Open in IMG/M
3300005093\|Ga0062594_100483668	All Organisms → cellular organisms → Bacteria	1039	Open in IMG/M
3300005093\|Ga0062594_101811905	Not Available	643	Open in IMG/M
3300005328\|Ga0070676_11202699	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	576	Open in IMG/M
3300005331\|Ga0070670_100002206	All Organisms → cellular organisms → Bacteria	16007	Open in IMG/M
3300005333\|Ga0070677_10341902	All Organisms → cellular organisms → Bacteria	773	Open in IMG/M
3300005333\|Ga0070677_10682433	Not Available	577	Open in IMG/M
3300005334\|Ga0068869_100001818	All Organisms → cellular organisms → Bacteria	12814	Open in IMG/M
3300005334\|Ga0068869_100095064	All Organisms → cellular organisms → Bacteria → Acidobacteria	2248	Open in IMG/M
3300005334\|Ga0068869_100378320	All Organisms → cellular organisms → Bacteria → Acidobacteria	1160	Open in IMG/M
3300005347\|Ga0070668_100525457	All Organisms → cellular organisms → Bacteria → Proteobacteria	1027	Open in IMG/M
3300005353\|Ga0070669_100248654	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1415	Open in IMG/M
3300005356\|Ga0070674_101953442	Not Available	534	Open in IMG/M
3300005364\|Ga0070673_100169136	All Organisms → cellular organisms → Bacteria → Acidobacteria	1864	Open in IMG/M
3300005364\|Ga0070673_102215652	Not Available	522	Open in IMG/M
3300005365\|Ga0070688_101280586	Not Available	591	Open in IMG/M
3300005438\|Ga0070701_10446340	All Organisms → cellular organisms → Bacteria	829	Open in IMG/M
3300005456\|Ga0070678_100304214	All Organisms → cellular organisms → Bacteria → Acidobacteria	1356	Open in IMG/M
3300005543\|Ga0070672_100588862	All Organisms → cellular organisms → Bacteria	968	Open in IMG/M
3300005543\|Ga0070672_101380050	All Organisms → cellular organisms → Bacteria	630	Open in IMG/M
3300005617\|Ga0068859_100605084	All Organisms → cellular organisms → Bacteria	1189	Open in IMG/M
3300005840\|Ga0068870_10114999	All Organisms → cellular organisms → Bacteria	1542	Open in IMG/M
3300005840\|Ga0068870_10788222	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	663	Open in IMG/M
3300005840\|Ga0068870_11193356	Not Available	551	Open in IMG/M
3300005841\|Ga0068863_100281606	All Organisms → cellular organisms → Bacteria → Acidobacteria	1611	Open in IMG/M
3300005841\|Ga0068863_100757703	All Organisms → cellular organisms → Bacteria → Acidobacteria	967	Open in IMG/M
3300005842\|Ga0068858_100009649	All Organisms → cellular organisms → Bacteria	9196	Open in IMG/M
3300005842\|Ga0068858_100328212	All Organisms → cellular organisms → Bacteria → Proteobacteria	1463	Open in IMG/M
3300005843\|Ga0068860_101053361	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	832	Open in IMG/M
3300006046\|Ga0066652_100202865	All Organisms → cellular organisms → Bacteria	1707	Open in IMG/M
3300006237\|Ga0097621_101195861	All Organisms → cellular organisms → Bacteria	716	Open in IMG/M
3300006755\|Ga0079222_11688240	Not Available	606	Open in IMG/M
3300006844\|Ga0075428_100548055	All Organisms → cellular organisms → Bacteria	1236	Open in IMG/M
3300006894\|Ga0079215_10301349	All Organisms → cellular organisms → Bacteria → Acidobacteria	885	Open in IMG/M
3300006918\|Ga0079216_10948187	Not Available	656	Open in IMG/M
3300006931\|Ga0097620_100605042	All Organisms → cellular organisms → Bacteria	1189	Open in IMG/M
3300007076\|Ga0075435_101428694	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
3300009098\|Ga0105245_12288571	All Organisms → cellular organisms → Bacteria → Acidobacteria	594	Open in IMG/M
3300009100\|Ga0075418_13174489	All Organisms → cellular organisms → Bacteria → Acidobacteria	500	Open in IMG/M
3300009147\|Ga0114129_12774267	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	583	Open in IMG/M
3300009174\|Ga0105241_11187311	All Organisms → cellular organisms → Bacteria → Acidobacteria	722	Open in IMG/M
3300009177\|Ga0105248_10421633	All Organisms → cellular organisms → Bacteria → Acidobacteria	1503	Open in IMG/M
3300009551\|Ga0105238_11797035	Not Available	645	Open in IMG/M
3300009610\|Ga0105340_1028058	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2189	Open in IMG/M
3300009678\|Ga0105252_10235686	All Organisms → cellular organisms → Bacteria	796	Open in IMG/M
3300010399\|Ga0134127_10155531	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2082	Open in IMG/M
3300010399\|Ga0134127_10731218	All Organisms → cellular organisms → Bacteria	1033	Open in IMG/M
3300010401\|Ga0134121_11626243	All Organisms → cellular organisms → Bacteria	666	Open in IMG/M
3300011119\|Ga0105246_11700327	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	600	Open in IMG/M
3300012891\|Ga0157305_10072785	All Organisms → cellular organisms → Bacteria	791	Open in IMG/M
3300012898\|Ga0157293_10021088	All Organisms → cellular organisms → Bacteria → Acidobacteria	1212	Open in IMG/M
3300012900\|Ga0157292_10195361	Not Available	673	Open in IMG/M
3300012903\|Ga0157289_10000488	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	4702	Open in IMG/M
3300012904\|Ga0157282_10222384	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	623	Open in IMG/M
3300012909\|Ga0157290_10091817	All Organisms → cellular organisms → Bacteria	879	Open in IMG/M
3300013296\|Ga0157374_11589481	Not Available	678	Open in IMG/M
3300013308\|Ga0157375_10591919	All Organisms → cellular organisms → Bacteria	1269	Open in IMG/M
3300014326\|Ga0157380_10032759	All Organisms → cellular organisms → Bacteria	3999	Open in IMG/M
3300014326\|Ga0157380_11228094	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	794	Open in IMG/M
3300014326\|Ga0157380_11299152	All Organisms → cellular organisms → Bacteria → Acidobacteria	775	Open in IMG/M
3300014326\|Ga0157380_11532683	All Organisms → cellular organisms → Bacteria → Acidobacteria	720	Open in IMG/M
3300014326\|Ga0157380_11828811	Not Available	667	Open in IMG/M
3300014969\|Ga0157376_11544377	All Organisms → cellular organisms → Bacteria → Acidobacteria	697	Open in IMG/M
3300015372\|Ga0132256_100516495	All Organisms → cellular organisms → Bacteria → Acidobacteria	1306	Open in IMG/M
3300017792\|Ga0163161_10880862	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	757	Open in IMG/M
3300017965\|Ga0190266_10009571	All Organisms → cellular organisms → Bacteria → Acidobacteria	2419	Open in IMG/M
3300017965\|Ga0190266_10360066	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	788	Open in IMG/M
3300017965\|Ga0190266_11280694	Not Available	514	Open in IMG/M
3300018083\|Ga0184628_10007308	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	5301	Open in IMG/M
3300018469\|Ga0190270_10755462	All Organisms → cellular organisms → Bacteria	973	Open in IMG/M
3300018469\|Ga0190270_10896016	All Organisms → cellular organisms → Bacteria	904	Open in IMG/M
3300018469\|Ga0190270_11203211	All Organisms → cellular organisms → Bacteria	796	Open in IMG/M
3300018476\|Ga0190274_10044002	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	3174	Open in IMG/M
3300018476\|Ga0190274_10230466	All Organisms → cellular organisms → Bacteria	1660	Open in IMG/M
3300018476\|Ga0190274_10585767	All Organisms → cellular organisms → Bacteria → Acidobacteria	1138	Open in IMG/M
3300018476\|Ga0190274_12540415	All Organisms → cellular organisms → Bacteria → Acidobacteria	609	Open in IMG/M
3300018481\|Ga0190271_10034052	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	4152	Open in IMG/M
3300018481\|Ga0190271_13269334	Not Available	543	Open in IMG/M
3300019356\|Ga0173481_10297603	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	749	Open in IMG/M
3300021082\|Ga0210380_10192306	All Organisms → cellular organisms → Bacteria	921	Open in IMG/M
3300022906\|Ga0247766_1179046	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300025899\|Ga0207642_10023814	All Organisms → cellular organisms → Bacteria → Acidobacteria	2452	Open in IMG/M
3300025901\|Ga0207688_10995206	Not Available	530	Open in IMG/M
3300025903\|Ga0207680_10563878	All Organisms → cellular organisms → Bacteria → Acidobacteria	813	Open in IMG/M
3300025907\|Ga0207645_10024226	All Organisms → cellular organisms → Bacteria → Acidobacteria	3937	Open in IMG/M
3300025907\|Ga0207645_10752801	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	662	Open in IMG/M
3300025908\|Ga0207643_10003329	All Organisms → cellular organisms → Bacteria → Acidobacteria	8660	Open in IMG/M
3300025908\|Ga0207643_10035763	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2786	Open in IMG/M
3300025920\|Ga0207649_10221490	All Organisms → cellular organisms → Bacteria → Proteobacteria	1348	Open in IMG/M
3300025923\|Ga0207681_10042226	All Organisms → cellular organisms → Bacteria	3045	Open in IMG/M
3300025923\|Ga0207681_10054265	All Organisms → cellular organisms → Bacteria → Acidobacteria	2724	Open in IMG/M
3300025923\|Ga0207681_10246479	All Organisms → cellular organisms → Bacteria	1393	Open in IMG/M
3300025923\|Ga0207681_11067951	All Organisms → cellular organisms → Bacteria → Proteobacteria	678	Open in IMG/M
3300025925\|Ga0207650_10840842	All Organisms → cellular organisms → Bacteria → Acidobacteria	779	Open in IMG/M
3300025926\|Ga0207659_10077205	All Organisms → cellular organisms → Bacteria	2451	Open in IMG/M
3300025926\|Ga0207659_11773017	Not Available	525	Open in IMG/M
3300025931\|Ga0207644_10023504	All Organisms → cellular organisms → Bacteria	4223	Open in IMG/M
3300025937\|Ga0207669_10561119	All Organisms → cellular organisms → Bacteria → Acidobacteria	923	Open in IMG/M
3300025937\|Ga0207669_11344554	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	607	Open in IMG/M
3300025940\|Ga0207691_10459385	Not Available	1083	Open in IMG/M
3300025940\|Ga0207691_10533282	All Organisms → cellular organisms → Bacteria → Acidobacteria	996	Open in IMG/M
3300025940\|Ga0207691_10630386	All Organisms → cellular organisms → Bacteria → Acidobacteria	906	Open in IMG/M
3300025941\|Ga0207711_10538727	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1089	Open in IMG/M
3300025941\|Ga0207711_10798598	Not Available	879	Open in IMG/M
3300025945\|Ga0207679_10029817	All Organisms → cellular organisms → Bacteria	3802	Open in IMG/M
3300025960\|Ga0207651_11850461	Not Available	543	Open in IMG/M
3300025972\|Ga0207668_10244120	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1455	Open in IMG/M
3300026035\|Ga0207703_10238437	All Organisms → cellular organisms → Bacteria	1634	Open in IMG/M
3300026075\|Ga0207708_10862947	All Organisms → cellular organisms → Bacteria → Acidobacteria	782	Open in IMG/M
3300026089\|Ga0207648_10675962	All Organisms → cellular organisms → Bacteria	956	Open in IMG/M
3300026118\|Ga0207675_100126951	All Organisms → cellular organisms → Bacteria	2416	Open in IMG/M
3300026118\|Ga0207675_101368745	All Organisms → cellular organisms → Bacteria	728	Open in IMG/M
3300026121\|Ga0207683_10710473	All Organisms → cellular organisms → Bacteria → Acidobacteria	932	Open in IMG/M
3300028380\|Ga0268265_10971280	All Organisms → cellular organisms → Bacteria	838	Open in IMG/M
3300028380\|Ga0268265_11353697	Not Available	713	Open in IMG/M
3300028710\|Ga0307322_10101112	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	741	Open in IMG/M
3300028802\|Ga0307503_10256073	All Organisms → cellular organisms → Bacteria → Acidobacteria	858	Open in IMG/M
3300028812\|Ga0247825_11172329	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	560	Open in IMG/M
3300031092\|Ga0308204_10226168	All Organisms → cellular organisms → Bacteria	595	Open in IMG/M
3300031538\|Ga0310888_10096914	All Organisms → cellular organisms → Bacteria → Acidobacteria	1492	Open in IMG/M
3300031547\|Ga0310887_10422646	All Organisms → cellular organisms → Bacteria → Acidobacteria	789	Open in IMG/M
3300031847\|Ga0310907_10479831	All Organisms → cellular organisms → Bacteria → Acidobacteria	662	Open in IMG/M
3300031858\|Ga0310892_10309796	All Organisms → cellular organisms → Bacteria	999	Open in IMG/M
3300032075\|Ga0310890_11484705	All Organisms → cellular organisms → Bacteria → Proteobacteria	558	Open in IMG/M
3300032122\|Ga0310895_10114815	All Organisms → cellular organisms → Bacteria → Acidobacteria	1118	Open in IMG/M
3300032144\|Ga0315910_11338828	All Organisms → cellular organisms → Bacteria → Acidobacteria	559	Open in IMG/M
3300032157\|Ga0315912_10012916	All Organisms → cellular organisms → Bacteria	7028	Open in IMG/M
3300032211\|Ga0310896_10900342	All Organisms → cellular organisms → Bacteria → Acidobacteria	512	Open in IMG/M
3300034148\|Ga0364927_0016897	All Organisms → cellular organisms → Bacteria → Acidobacteria	1677	Open in IMG/M
3300034149\|Ga0364929_0091908	All Organisms → cellular organisms → Bacteria → Acidobacteria	951	Open in IMG/M
3300034417\|Ga0364941_204684	Not Available	513	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	58.52%
Environmental	Environmental	41.48%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	58.52%
Terrestrial	Environmental → Terrestrial	38.52%
Aquatic	Environmental → Aquatic	2.96%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	37.78%
Soil	Environmental → Terrestrial → Soil	35.56%
Rhizoplane	Host-Associated → Plants → Rhizoplane	20.00%
Sediment	Environmental → Aquatic → Sediment	2.22%
Floodplain	Environmental → Terrestrial → Floodplain	2.22%
Freshwater	Environmental → Aquatic → Freshwater	0.74%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.74%
Roots	Host-Associated → Plants → Roots	0.74%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	33.33%
Soil	Host-Associated → Plants → Rhizosphere → Soil	23.70%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	18.52%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	14.07%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.22%
Loam	Environmental → Terrestrial → Soil → Loam	2.22%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	2.22%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.48%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.74%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.74%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.74%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	23.70%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	18.52%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	14.07%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	5.93%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.44%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.22%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.22%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	2.22%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.48%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.74%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.74%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.74%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	17.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	11.11%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	10.37%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	8.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	7.41%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	5.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	3.70%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.22%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.22%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.22%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	2.22%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.22%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.22%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.96%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.96%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.48%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.48%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.48%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.48%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.48%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.48%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.74%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.74%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.74%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.74%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.74%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.74%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.74%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.74%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.74%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300006931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2)	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009610	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700	Environmental	Open in IMG/M
3300009678	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012891	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S148-409B-2	Environmental	Open in IMG/M
3300012898	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S194-509B-1	Environmental	Open in IMG/M
3300012900	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S179-409R-1	Environmental	Open in IMG/M
3300012903	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S134-311R-1	Environmental	Open in IMG/M
3300012904	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S029-104C-1	Environmental	Open in IMG/M
3300012909	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S149-409B-1	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300022906	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L223-509R-6	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028710	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M
3300032144	Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soil	Environmental	Open in IMG/M
3300032157	Garden soil microbial communities collected in Santa Monica, California, United States - V. faba soil	Environmental	Open in IMG/M
3300032211	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1	Environmental	Open in IMG/M
3300034148	Sediment microbial communities from East River floodplain, Colorado, United States - 18_j17	Environmental	Open in IMG/M
3300034149	Sediment microbial communities from East River floodplain, Colorado, United States - 20_j17	Environmental	Open in IMG/M
3300034417	Sediment microbial communities from East River floodplain, Colorado, United States - 17_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1011404312	3300000956	Soil	MNPHPPYDLPGDPDDEFQGDVHAADIVSPTGEEMPMATHAEVHRSPEARVLDARSHRDDHRG*
JGI10216J12902_1023367302	3300000956	Soil	MNPPPHDTPFDPERDDPADEFQGDTQAADIVGPTGEEMPIATHAEVHRVPELRALDAPSHRSDRRG*
JGI10216J12902_1152504472	3300000956	Soil	MNPPPPFEILDGPDDEFQGDTHAPDIVGPTGEEMPMATHAETHSEPETRALAARPSGPERRG*
Ga0062593_1022584412	3300004114	Soil	MPDDPEDEFQGDTHAPDIVGPTGEEMPRATHAEVHSQPEVRALAARPSGPERRS*
Ga0063356_1016854352	3300004463	Arabidopsis Thaliana Rhizosphere	MNPPPFDIPDDPADEFQGDMHAADIVGPTGEEMPIATHAEVHRTPEPRAYEARSHRGDHRS*
Ga0062594_1004836681	3300005093	Soil	MNPPPPYEIHDDPDDEFQGDTHAPDIVGPTGEEMPMATHAEVHTLPELRPLAARPSGPERRGY*
Ga0062594_1018119052	3300005093	Soil	MVPRPMSPAPPYDDLDDPSDEFQGDVHAADIVSPTGEEMPMATHAEVHRTPELRGLEARSPRGDHRD*
Ga0070676_112026991	3300005328	Miscanthus Rhizosphere	MVSRPMNPAPPSDDLDEPADEFQGDVHAADIVSPTGEEMPIATHAEVHRIPELRSSGARSPQGDHQD*
Ga0070670_1000022067	3300005331	Switchgrass Rhizosphere	MNPPHPYDDADDPADEFQGDTHAADIVGPTGEEMPIATHAEVHRTPELRGLETRSSREGRRD*
Ga0070677_103419021	3300005333	Miscanthus Rhizosphere	MTHPPPFKGPDDPADEFQGDVHAADIVSPTGEEMPIATHAEVHRTPELRGLEVRSSRGDRRD*
Ga0070677_106824332	3300005333	Miscanthus Rhizosphere	MNPPPPYDTPDDPTDEFQGDMHAADIVSPTGEEMPMATHAEVHRTPELRGLEARSPRGDHRD*
Ga0068869_1000018182	3300005334	Miscanthus Rhizosphere	MVPRPMSTAPPYDDLDDPSDEFQGDVHAADIVSPTGEEMPMATHAEVHRTPELRGLEARSPRGDHRD*
Ga0068869_1000950641	3300005334	Miscanthus Rhizosphere	MNPSPDDNSDDPADEFQGDTHAADIVGPTGEEMPIATHAEVHRPPEGPVLEGRPHRRDSRN*
Ga0068869_1003783201	3300005334	Miscanthus Rhizosphere	MVSRPMNPAPPSDDLDEPADEFQGDVHAADIVSPTGEEMPIATHAEVHRIPELRSPGARSPQGDHQD*
Ga0070668_1005254571	3300005347	Switchgrass Rhizosphere	IPRPMSTAPPYDDLDDPSDEFQGDVHAADIVSPTGEEMPMATHAEVHRTPEVRGLEGPSSRGDRRD*
Ga0070669_1002486541	3300005353	Switchgrass Rhizosphere	MTLPPRYDYPDDPSDEFQGDMHAADIVSPTGEEMPIATHAEVHRLPEPRALEARAHRGGSGH*
Ga0070674_1019534422	3300005356	Miscanthus Rhizosphere	MNPPPPFEIPDDPEDEFQGDTHAPDIVGPTGEEMPRATHAEVHSLPDVRALAARPSGPERRS*
Ga0070673_1001691362	3300005364	Switchgrass Rhizosphere	MNPPPDDNSDDPADEFQGDTHAADIVGPTGEEMPIATHAEVHRPPEGPVLEGRPHRRDSRN*
Ga0070673_1022156521	3300005364	Switchgrass Rhizosphere	MNPPPPFETPDDPEDEFQGDTHAPDIVGPTGEEMPRATHAEVHSAPDVPALAGRPSGPERRS*
Ga0070688_1012805861	3300005365	Switchgrass Rhizosphere	MNPPPPYDDPDDPADEFQGDVHAADIVSPTGEEMPIATHAEVHRIPELRSSGARSPQGDHQD*
Ga0070701_104463403	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	PGTAIECSKAMNPPPDDNSDDPADEFQGDTHAADIVGPTGEEMPIATHAEVHRPPEGPVLEGRPHRRDSRN*
Ga0070678_1003042142	3300005456	Miscanthus Rhizosphere	MVPSPMTLLPPFDGPDDPADEFQGDVHAADIVSPTGEEMPIATHAEVHRTPELRGLEVRSSRGDRRD*
Ga0070672_1005888622	3300005543	Miscanthus Rhizosphere	MNLPPAHDEPNDPADEFQGDAHAADIVSPTGEEMPIATHAEVHRTPELRGLAARASRGGRLD*
Ga0070672_1013800501	3300005543	Miscanthus Rhizosphere	MNPPPPFEMPDDPEDEFQGDTHAPDIVGPTGEEMPRATHAEVHSAPDVHALAGRPSGPERRS*
Ga0068859_1006050842	3300005617	Switchgrass Rhizosphere	MSTAPPYDDLDDPSDEFQGDVHAADIVSPTGEEMPMATHAEVHRTPELRGLETRASRGDRRD*
Ga0068870_101149992	3300005840	Miscanthus Rhizosphere	MSTAPPYDDLDDPSDEFQGDVHAADIVSPTGEEMPMATHAEVHRTPELRGLEARSPRGDHRD*
Ga0068870_107882222	3300005840	Miscanthus Rhizosphere	MNPAPPSDDLDEPADEFQGDVHAADIVSPTGEEMPIATHAEVHRIPELRSPGARSPQGDHQD*
Ga0068870_111933561	3300005840	Miscanthus Rhizosphere	PMTVPPPYETPGDPADEFQGDTHAADIVGPTGEEMPIATHAEVHRPPDPRAVEPRTQRVWLPFTSSRRLT*
Ga0068863_1002816062	3300005841	Switchgrass Rhizosphere	MNPAPPSDDLDEPADEFQGDVHAADIVSPTGEEMPIATHAEVHRIPELRSSGARSPQGDHQD*
Ga0068863_1007577031	3300005841	Switchgrass Rhizosphere	MNPPHPYDDADDPADEFQGDTHAADIVGPTGEEMPIATHAEVHRTLELRGLETRSSREGRRD*
Ga0068858_1000096498	3300005842	Switchgrass Rhizosphere	MHLPPAFDAFDDPDDEFQGDVHAADIVSPTGEEMPMSTHAEVHRQPEPRVLESRPNRTES
Ga0068858_1003282121	3300005842	Switchgrass Rhizosphere	LDDPSDEFQGDVHAADIVSPTGEEMPMATHAEVHRTPELRGLEARSPRGDHRD*
Ga0068860_1010533611	3300005843	Switchgrass Rhizosphere	PPYGIDDPEDEFQGDVHAADIVGRTGEEMPIATHAEVHRTPEPRALEAPSHRATGRD*
Ga0066652_1002028652	3300006046	Soil	MNPHPPHDDADDPADEFQGDMHAADIVGPTGEEMPMATHAEVHRTPELRGLEARSSRGDRRD*
Ga0097621_1011958612	3300006237	Miscanthus Rhizosphere	MNPPPPYDDLDDPSDEFQGDTHAADIVGPTGEEMPIATHAEVHRTPELRGLEARSPRGDRRD*
Ga0079222_116882401	3300006755	Agricultural Soil	PAFDAFDDPDDEFQGDVHAADIVSPTGEEMPMSTHAEVHRQPEPRVLESRPNRTEP*
Ga0075428_1005480552	3300006844	Populus Rhizosphere	MHPPPPYDIPDDPADEFQGDMHAADIVGPTGEEMPIATHAEVHRTPEPRAYEARSHRGDHRS*
Ga0079215_103013491	3300006894	Agricultural Soil	MNPPPHDTPFDPERDDPADEFQGDTQAADIVGPTGEEMPIATHAEVHRVPELRALAAPSHRSDRRG*
Ga0079216_109481872	3300006918	Agricultural Soil	MNPPPPYDTPDDPADEFQGDVHAADIVGPTGEEMPIATHAEVHRMPELRVLGARSHRGDSQD*
Ga0097620_1006050422	3300006931	Switchgrass Rhizosphere	MVPRPMSTAPPYDDLDDPSDEFQGDVHAADIVSPTGEEMPMATHAEVHRTPELRGLETRASRGDRRD*
Ga0075435_1014286942	3300007076	Populus Rhizosphere	MTLPPRYDYPDDPSDEFQGDMHAADIVSPTGEEMPIATHAEVHRLPEPRALEARAHRGGSGY*
Ga0105245_122885711	3300009098	Miscanthus Rhizosphere	MSPAPPYDDLDDPADEFQGDVHAADIVSPTGEEMPMATHAEVHRTPEVRGLEAPSRRGDHRD*
Ga0075418_131744892	3300009100	Populus Rhizosphere	MHPPPPYDIPDDPADEFQGDMHAADIVGPTGEEMPIATHAEVHRTPEPRAYDARSRRGDHRG*
Ga0114129_127742671	3300009147	Populus Rhizosphere	MNLPPRYDHPDDPSDEFQGDMHAADIVSPTGEEMPIATHAEVHRLPEPRALEARAHRGGSGH*
Ga0105241_111873112	3300009174	Corn Rhizosphere	MSPAPPYDDLDDPSDEFQGDVHAADIVSPTGEEMPMATHAEVHRTPELRGLEARSPRGDHRD*
Ga0105248_104216332	3300009177	Switchgrass Rhizosphere	MSPAPPYDDLDDPSDEFQGDVHAADLVSPTGEEMPMATHAEVHRTPELRGLEARSPRGDHRD*
Ga0105238_117970352	3300009551	Corn Rhizosphere	MNPAPPSDDLDEPADEFQADVHAADIVSPTGEEMPMATHAEVHRTPELRGLEARSPRGDHRD*
Ga0105340_10280582	3300009610	Soil	MNPPPPYDAADDPDDEFQGDVHAADIVGPTGEEMPMATHAEVHRTPEPPVLEARSNRGDRRD*
Ga0105252_102356862	3300009678	Soil	MNPPPPYDTPDDPADEFQGDVQAADIVGPTGEEMPIATHAEVHRMPELRALGARSHRGDPQD*
Ga0134127_101555313	3300010399	Terrestrial Soil	MNLPPAHDEPNDPADEFQGDVHAADIVSPTGEEMPMATHAEVHRTPELRGLEARSPRGDHRD*
Ga0134127_107312182	3300010399	Terrestrial Soil	MNPPPPHDISDDPSDEFQGDVHAADIVSPTGEEMPIATHAEVHRTPELRGLEARSSRGDRRD*
Ga0134121_116262431	3300010401	Terrestrial Soil	MSTAPPYDDLDDPSDEFQGDVHAADLVSPTGEEMPMATHAEVHRTPELRGLEARSPRGDHRD*
Ga0105246_117003272	3300011119	Miscanthus Rhizosphere	MNPPPYGIDDPEDEFQGDVHAADIVGRTGEEMPIATRAEVHRTPEPRALEAPSHRATGRD
Ga0157305_100727852	3300012891	Soil	DDPEDEFQGDTHAPDIVGPTGEEMPRATHAEVHSQPEVRALAARPSGPERRS*
Ga0157293_100210882	3300012898	Soil	MNPPPPFEMPDDPEDEFQGDTHAPDIVGPTGEEMPRATHAEVHSQPEVRALAARPSGPERRS*
Ga0157292_101953612	3300012900	Soil	MNPPPPYEIHDDPADEFQGDTHAPDIVGPTGEEMPMATHAEVHTLPELRPLAARPSGPERRGY*
Ga0157289_100004886	3300012903	Soil	MPDDPEDEFQGDTHAPDIVGPTGEEMPRATHAEAHSQPEVRALAARPSGPERRS*
Ga0157282_102223842	3300012904	Soil	MNPPPPFEMPDDPEAEFQGDTHAPDIVGPTGEEMPRATHAEVHSQPEVRALAARPSGPERRS*
Ga0157290_100918171	3300012909	Soil	DPDDEFQGDTHAPDIVGPTGEEMPMATHAEVHTLPELRPLAARPSGPERRGY*
Ga0157374_115894812	3300013296	Miscanthus Rhizosphere	NPPHPYDDADDPADEFQGDTHAADIVGPTGEEMPIATHAEVHRTPELRGLETR*
Ga0157375_105919192	3300013308	Miscanthus Rhizosphere	MSPSPPYDDPDDPADEFQGDMHAADIVSPTGEEMPMATHAEVHRTPELRGLEARSPRGDHRD*
Ga0157380_100327595	3300014326	Switchgrass Rhizosphere	MNPPPPFEMPDDPEDEFQGDTHAPDIVGPTGEEMPRATHAEVHSQPEVRALAAR
Ga0157380_112280942	3300014326	Switchgrass Rhizosphere	MTLLPPFDGPDDPADEFQGDVHAADIVSPTGEEMPIATHAEVHRTPELRGLEVRSSRGDRRD*
Ga0157380_112991522	3300014326	Switchgrass Rhizosphere	MNPPPPYDIPDDPADEFQGDMHWADIVGRTGEEMPIATHAEVHRTPEPRVYEARSHRGDHRS*
Ga0157380_115326831	3300014326	Switchgrass Rhizosphere	MNLPPAHDEPNDPADEFQGDAHAADIVSPTGEEMPIATHAEVHRTPELRGLAA
Ga0157380_118288112	3300014326	Switchgrass Rhizosphere	MNPPPPFEMPDDPEDEFQGDTHAPDIVGPTGEEMPRATHAEVHSAPDMPALAGRPSGPERRS*
Ga0157376_115443772	3300014969	Miscanthus Rhizosphere	MNPAPPSDDLDEPADEFQGDVHAADIVSPTGEEMPIATHAEVHRIPELRSSGARSPQGDH
Ga0132256_1005164953	3300015372	Arabidopsis Rhizosphere	MSPAPPYDDLDDPSDEFQGDVHAADIVSPTGEEMPIATHAEVHRIPELRSPGARSPQGDHQD*
Ga0163161_108808622	3300017792	Switchgrass Rhizosphere	MNPPPPYDDPDDPADEFQGDMHAADIVSPTGEEMPMATHAEVHRTPEVRGLEGPSSRGDRRD
Ga0190266_100095712	3300017965	Soil	MVCWLMNPPPPYDAADDPDDEFQGDVHAADIVGPTGEEMPMATHAEVHRTPEPRVLEAKSSRGDRRG
Ga0190266_103600662	3300017965	Soil	MNPPPPFEILDGPDDEFQGDTHAPDIVGPTGEEMPMATHAEVHTQPEMRALAARPSGPERRG
Ga0190266_112806941	3300017965	Soil	NPPPPFEMPDDPEDEFQGDTHAPDIVGPTGEEMPRATHAEVHSQPEVRALAARPSGPERR
Ga0184628_100073086	3300018083	Groundwater Sediment	MNPPPPYEMPNDPADEFQGDTHASDIVGPTGEEMPMATHAEVHTLPEMHALAARPSGPERRG
Ga0190270_107554622	3300018469	Soil	MNPPPPYEIHDDPDDEFQGDTHASDIVGPTGEEMPRATHAEVHTLPELRPLAARPSGPERRG
Ga0190270_108960162	3300018469	Soil	MNPPPPYDTPDDPADEFQGDVQAADIVGPTGEEMPIATHAEVHRMPELRALGARSHRGDSQD
Ga0190270_112032112	3300018469	Soil	MNPPPPFEMPDDPEDEFQGDMHAPDIVGPTGEEMPRATHAEVHSLPEVRALTARPSGPERRS
Ga0190274_100440025	3300018476	Soil	MPDEPEDEFQGDLHASDIVSPTGEEMPRATHAEVHSLPEVHALAARPSGPERRS
Ga0190274_102304662	3300018476	Soil	MNPNPPYDGPDDAADEFQGDVDAADIVSPTGEEMPIATHAEVHRTPELRGLEARASRGDRRD
Ga0190274_105857672	3300018476	Soil	MNPPPPFEILDGPDDEFQGDTHAPDIVGPTGEEMPMATHAETHSEPETRALAARPSGPERRG
Ga0190274_125404152	3300018476	Soil	MNPPPPFEMPDDPEDEFQGDTHAPDIVGPTGEEMPRATHAEVHSLPEVRALAARPSGPERRS
Ga0190271_100340522	3300018481	Soil	MPDDPEDEFQGDTHAPDIVGPTGEEMPRATHAEVHSLPEVRALVARPSGPERRS
Ga0190271_132693341	3300018481	Soil	MNPPPPYEIHDEPDDEFQGDTHAPDIVGPTGEEMPMATHAEVHTLPEQRPLAARPSGPERRG
Ga0173481_102976032	3300019356	Soil	MNPPPPFEMPDDPEDEFQGDTHAPDIVGPTGEEMPRATHAEVHSQPEVRALAARPSGPERRS
Ga0210380_101923061	3300021082	Groundwater Sediment	MNPPPPYEIHDDPADEFQGDTHAPDIVGPTGEEMPMATHAEVHTLPELRPLAARPSGPERRGY
Ga0247766_11790462	3300022906	Plant Litter	LRLMNPPPPFEMPDDPEDEFQGDTHAPDIVGPTGEEMPRATHAEVHSQPEVRALAARPSGPERRS
Ga0207642_100238143	3300025899	Miscanthus Rhizosphere	MVPRPMSTAPPYDDLDDPSDEFQGDVHAADIVSPTGEEMPMATHAEVHRTPELRGLEARSPRGDHRD
Ga0207688_109952062	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MVPRPMTPPPPYDDADDPADEFQGDVHAADLVSPTGEEMPVATHAEVHRTPELRGLEARSPRGDHRD
Ga0207680_105638781	3300025903	Switchgrass Rhizosphere	MVPRPMSTAPPYDDLDDPSDEFQGDVHAADIVSPTGEEMPMATHAEVHRTPEVRGLEGRSSRGDRRD
Ga0207645_100242263	3300025907	Miscanthus Rhizosphere	MVPRPMSPAPPYDDLDDPSDEFQGDVHAADIVSPTGEEMPMATHAEVHRTPELRGLEARSPRGDHRD
Ga0207645_107528012	3300025907	Miscanthus Rhizosphere	MNPAPPSDDLDEPADEFQGDVHAADIVSPTGEEMPIATHAEVHRIPELRSSGARSPQGDHQD
Ga0207643_100033297	3300025908	Miscanthus Rhizosphere	MNPPPDDNSDDPADEFQGDTHAADIVGPTGEEMPIATHAEVHRPPEGPVLEGRPHRRDSR
Ga0207643_100357635	3300025908	Miscanthus Rhizosphere	MNPPPPYEIHDDPDDEFQGDTHAPDIVGPTGEEMPMATHAEVHTLPELRPLAARPSGPERRGY
Ga0207649_102214902	3300025920	Corn Rhizosphere	MNPPHPYDDADDPADEFQGDTHAADIVGPTGEEMPIATHAEVHRTPELRGLETRSSREGRRD
Ga0207681_100422262	3300025923	Switchgrass Rhizosphere	MNPSPDDNSDDPADEFQGDTHAADIVGPTGEEMPIATHAEVHRPPEGPVLEGRPHRRDSR
Ga0207681_100542653	3300025923	Switchgrass Rhizosphere	MTLPPRYDYPDDPSDEFQGDMHAADIVSPTGEEMPIATHAEVHRLPEPRALEARAHRGGSGH
Ga0207681_102464791	3300025923	Switchgrass Rhizosphere	YEIHDDPADEFQGDTHAPDIVGPTGEEMPMATHAEVHTLPELRPLAARPSGPERRGY
Ga0207681_110679511	3300025923	Switchgrass Rhizosphere	EMADDPADEFQGDTDAPDIVGPTGEEMPMATHAEVHTLPDRHALAARPSGPERRG
Ga0207650_108408421	3300025925	Switchgrass Rhizosphere	MTVPPPYETPGDPADEFQGDTHAADIVGPTGEEMPIATHAEVHRPPDPRGLEARTGRVW
Ga0207659_100772052	3300025926	Miscanthus Rhizosphere	MNPAPPSDDLDEPADEFQGDVHAADIVSPTGEEMPIATHAEVHRIPELRSPGARSPQGDHQD
Ga0207659_117730172	3300025926	Miscanthus Rhizosphere	ADDPADEFQGDTHAADIVGPTGEEMPIATHAEVHRTPELRGLETRSSREGRRD
Ga0207644_100235042	3300025931	Switchgrass Rhizosphere	MVSRPMNPAPPSDDLDEPADEFQGDVHAADIVSPTGEEMPIATHAEVHRIPELRSPGARSPQGDHQD
Ga0207669_105611192	3300025937	Miscanthus Rhizosphere	MTHPPPFKGPDDPADEFQGDVHAADIVSPTGEEMPIATHAEVHRTPELRGLEVRSSRGDRRD
Ga0207669_113445542	3300025937	Miscanthus Rhizosphere	MNPPPPFEIPDDPEDEFQGDTHAPDIVGPTGEEMPRATHAEVHSLPDVRALAARPSGPERRS
Ga0207691_104593852	3300025940	Miscanthus Rhizosphere	MKPPYEMADDPADEFQGDTDAPDIVGPTGEEMPMATHAEVHTLPERHALAARPSGPERRG
Ga0207691_105332822	3300025940	Miscanthus Rhizosphere	MNLPPAHDEPNDPADEFQGDAHAADIVSPTGEEMPIATHAEVHRTPELRGLAARASRGGRLD
Ga0207691_106303861	3300025940	Miscanthus Rhizosphere	MSPSPPYDDPDDPADEFQGDMHAADIVSPTGEEMPMATHAEVHRTPEVRGLEGPSSRGDRRD
Ga0207711_105387272	3300025941	Switchgrass Rhizosphere	MHLPPAFDAFDDPDDEFQGDVHAADIVSPTGEEMPMSTHAEVHRQPEPRVLESRPNRTEP
Ga0207711_107985981	3300025941	Switchgrass Rhizosphere	MKPPYEMADDPADEFQGDTDAPDIVGPTGEEMPMATHAEVHTLPERHALAARP
Ga0207679_100298174	3300025945	Corn Rhizosphere	AWRLNTRRPMNPPHPYDDADDPADEFQGDTHAADIVGPTGEEMPIATHAEVHRTPELRGLETRSSREGRRD
Ga0207651_118504612	3300025960	Switchgrass Rhizosphere	FEMPDDPEDEFQGDTHAPDIVGPTGEEMPRATHAEVHSAPDVPALAGRPSGPERRS
Ga0207668_102441201	3300025972	Switchgrass Rhizosphere	PYDDLDDPSDEFQGDVHAADIVSPTGEEMPMATHAEVHRTPEVRGLEGPSSRGDRRD
Ga0207703_102384371	3300026035	Switchgrass Rhizosphere	TAPPYDDLDDPSDEFQGDVHAADIVSPTGEEMPMATHAEVHRTPELRGLEARSPRGDHRD
Ga0207708_108629472	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MNPPPDDNSDDPADEFQGDTHAADIVGPTGEEMPIATHAEVHRTPEPRAYEARSHRGDHR
Ga0207648_106759622	3300026089	Miscanthus Rhizosphere	MAPPVPYDTPDDPADEFQGDVHAADIVGPTGEEMPIATHAEVHRTPEPRALEARAHRGGSAD
Ga0207675_1001269512	3300026118	Switchgrass Rhizosphere	MVPRPMSTAPPYDDLDDPSDEFQGDVHAADLVSPTGEEMPMATHAEVHRTPELRGLEARSPRGDHRD
Ga0207675_1013687451	3300026118	Switchgrass Rhizosphere	DDPDDPADEFQGDMHAADIVSPTGEEMPMATHAEVHRTPEVRGLVGPSSRGDRRD
Ga0207683_107104732	3300026121	Miscanthus Rhizosphere	MTLLPPFDGPDDPADEFQGDVHAADIVSPTGEEMPIATHAEVHRTPELRGLEVRSSRGDRRD
Ga0268265_109712802	3300028380	Switchgrass Rhizosphere	MNPSPDDNSDDPADEFQGDTHAADIVGPTGEEMPIATHAQVHRPPEGPVLEGRPHRRDSR
Ga0268265_113536971	3300028380	Switchgrass Rhizosphere	MNPPPPYDSPDDPADEFQGDMHAADIVGPTGEEMPIATHAEVHRTPELRVLEARSHRGGSRD
Ga0307322_101011122	3300028710	Soil	MPDEPEDEFQGDLHASDIVSPTGEEMPRATHAEVHSLPEGHALAARPSGPERRS
Ga0307503_102560732	3300028802	Soil	MNPPPPFNDPDDPADEFQGDVHAADIVSPTGEEMPMATHAEVHRTPELRGLEARSSRGDRRD
Ga0247825_111723291	3300028812	Soil	MPDDPEDEFQGDTHAPDIVGPTGEEMPRATHAEVHSQPEVRALAARPSGPERRS
Ga0308204_102261682	3300031092	Soil	DTSDDPGDEFQGDTDAADIVGPTGEEMPIATHAEVHRPPDAGASEARPHRGDSRN
Ga0310888_100969141	3300031538	Soil	MNPPPPYEIHDDPADEFQGDTHAPDIVGPTGEEMPMATHAEVHTLPELRPLAARP
Ga0310887_104226462	3300031547	Soil	MHPAPPYDTPDDPADEFQGDTQAADIVGPTGEEMPVATHAEVHRTPEPRAYEARPHRGDHRR
Ga0310907_104798311	3300031847	Soil	MIPPPPHDTPDDPADEFQGDTHAADIVGPTGEEMPVATHAEVHRTPEPRAYQARSQR
Ga0310892_103097962	3300031858	Soil	MIPPPPHDTPDDPADEFQGDTHAADIVGPTGEEMPVATHAEVHRTPEPRAYQARSQRGDQRS
Ga0310890_114847052	3300032075	Soil	PMNPPPPYEIHDDPADEFQGDTHAPDIVGPTGEEMPMATHAEVHTLPELRPLAARPSGPERRGY
Ga0310895_101148152	3300032122	Soil	MNPPPPDDTPDDPADEFQGDTHAADIVGPTGEEMPVATHAEVHRTPEPRAYQARSQRGDQRS
Ga0315910_113388282	3300032144	Soil	MNPPPPYDIPDDPADEFQGDMHWADIVGRTGEEMPIATHAEVHRTPEPRVYEARPHRGDHRS
Ga0315912_100129166	3300032157	Soil	MNPPPPYDIPDDPADEFQGDMHWADIVGRTGEEMPIATHAEVHRTPEPRVYEARSHRGDHRS
Ga0310896_109003422	3300032211	Soil	MNPPSPYDIPDDPSDEFQGDVHAADIVSPTGEEMPIATHAEVRRTPEPRACDARSHRGDHRS
Ga0364927_0016897_259_447	3300034148	Sediment	MNPPPPYEAADDPDDEFQGDVHAADIVGPTGEEMPMATHAEVHRTPEPPVLEARSNRGDRRD
Ga0364929_0091908_1_162	3300034149	Sediment	MNPPPPNDAADDPDDEFQGDVHAADIVGPTGEEMPMATHAEVHRTPEPRVLEAK
Ga0364941_204684_103_267	3300034417	Sediment	MPNDPADEFQGDTHASDIVGPTGEEMPMATHAEVHTLPEMHALAARPSGPERRG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F058229

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences