Metagenome / Metatranscriptome Family F058226

Basic Information
Family ID	F058226
Family Type	Metagenome / Metatranscriptome
Number of Sequences	135
Average Sequence Length	43 residues
Representative Sequence	WNQRVDSNHRYTTSIAIRDQMVAKGGVAEGYGPNAVALCALP
Number of Associated Samples	117
Number of Associated Scaffolds	135

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	0.00 %
Associated GOLD sequencing projects	107
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.46

Most Common Taxonomy
Group	Unclassified (100.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (8.148 % of family members)
Environment Ontology (ENVO)	Unclassified (44.444 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (54.815 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 12.86% β-sheet: 11.43% Coil/Unstructured: 75.71%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 135 Family Scaffolds
PF13458	Peripla_BP_6	8.15
PF02586	SRAP	7.41
PF13365	Trypsin_2	3.70
PF13180	PDZ_2	2.96
PF01266	DAO	2.96
PF12833	HTH_18	1.48
PF03707	MHYT	1.48
PF06580	His_kinase	1.48
PF00072	Response_reg	1.48
PF07171	MlrC_C	0.74
PF13335	Mg_chelatase_C	0.74
PF08279	HTH_11	0.74
PF05726	Pirin_C	0.74
PF05987	DUF898	0.74
PF01053	Cys_Met_Meta_PP	0.74
PF07298	NnrU	0.74
PF02543	Carbam_trans_N	0.74
PF12276	DUF3617	0.74
PF08241	Methyltransf_11	0.74
PF07883	Cupin_2	0.74
PF00441	Acyl-CoA_dh_1	0.74
PF14684	Tricorn_C1	0.74
PF01425	Amidase	0.74
PF03466	LysR_substrate	0.74
PF14497	GST_C_3	0.74
PF06189	5-nucleotidase	0.74
PF01874	CitG	0.74
PF14559	TPR_19	0.74
PF00392	GntR	0.74
PF15780	ASH	0.74
PF13565	HTH_32	0.74
PF03279	Lip_A_acyltrans	0.74
PF00908	dTDP_sugar_isom	0.74
PF03480	DctP	0.74
PF01641	SelR	0.74
PF07228	SpoIIE	0.74
PF08546	ApbA_C	0.74
PF00293	NUDIX	0.74
PF14907	NTP_transf_5	0.74
PF00497	SBP_bac_3	0.74

COG ID	Name	Functional Category	% Frequency in 135 Family Scaffolds
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	7.41
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	1.48
COG3300	MHYT domain, NO-binding membrane sensor	Signal transduction mechanisms [T]	1.48
COG3275	Sensor histidine kinase, LytS/YehU family	Signal transduction mechanisms [T]	1.48
COG2972	Sensor histidine kinase YesM	Signal transduction mechanisms [T]	1.48
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.74
COG5476	Microcystin degradation protein MlrC, contains DUF1485 domain	General function prediction only [R]	0.74
COG4269	Uncharacterized membrane protein YjgN, DUF898 family	Function unknown [S]	0.74
COG4261	Predicted acyltransferase, LPLAT superfamily	General function prediction only [R]	0.74
COG4100	Cystathionine beta-lyase family protein involved in aluminum resistance	Inorganic ion transport and metabolism [P]	0.74
COG4094	Uncharacterized membrane protein	Function unknown [S]	0.74
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	0.74
COG2192	Predicted carbamoyl transferase, NodU family	General function prediction only [R]	0.74
COG2008	Threonine aldolase	Amino acid transport and metabolism [E]	0.74
COG1982	Arginine/lysine/ornithine decarboxylase	Amino acid transport and metabolism [E]	0.74
COG0075	Archaeal aspartate aminotransferase or a related aminotransferase, includes purine catabolism protein PucG	Amino acid transport and metabolism [E]	0.74
COG1921	Seryl-tRNA(Sec) selenium transferase	Translation, ribosomal structure and biogenesis [J]	0.74
COG1898	dTDP-4-dehydrorhamnose 3,5-epimerase or related enzyme	Cell wall/membrane/envelope biogenesis [M]	0.74
COG1893	Ketopantoate reductase	Coenzyme transport and metabolism [H]	0.74
COG1767	Triphosphoribosyl-dephospho-CoA synthetase	Coenzyme transport and metabolism [H]	0.74
COG1741	Redox-sensitive bicupin YhaK, pirin superfamily	General function prediction only [R]	0.74
COG1560	Palmitoleoyl-ACP: Kdo2-lipid-IV acyltransferase (lipid A biosynthesis)	Lipid transport and metabolism [I]	0.74
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	0.74
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	0.74
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	0.74
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	0.74
COG0229	Peptide methionine sulfoxide reductase MsrB	Posttranslational modification, protein turnover, chaperones [O]	0.74
COG0156	7-keto-8-aminopelargonate synthetase or related enzyme	Coenzyme transport and metabolism [H]	0.74
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.74

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	53.33%
Host-Associated	Host-Associated	41.48%
Engineered	Engineered	5.19%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	48.15%
Plants	Host-Associated → Plants	41.48%
Aquatic	Environmental → Aquatic	5.19%
Wastewater	Engineered → Wastewater	4.44%
Solid Waste	Engineered → Solid Waste	0.74%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	45.19%
Rhizosphere	Host-Associated → Plants → Rhizosphere	22.22%
Rhizoplane	Host-Associated → Plants → Rhizoplane	16.30%
Freshwater	Environmental → Aquatic → Freshwater	5.19%
Peat	Environmental → Terrestrial → Peat	2.96%
Roots	Host-Associated → Plants → Roots	2.96%
Anaerobic Digestor	Engineered → Wastewater → Anaerobic Digestor	2.96%
Activated Sludge	Engineered → Wastewater → Activated Sludge	1.48%
Grass	Engineered → Solid Waste → Grass	0.74%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	29.63%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	14.07%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.33%
Loam	Environmental → Terrestrial → Soil → Loam	11.85%
Soil	Host-Associated → Plants → Rhizosphere → Soil	8.89%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.70%
Lake	Environmental → Aquatic → Freshwater → Lake	2.22%
Ice	Environmental → Aquatic → Freshwater → Ice	2.22%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.96%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	2.96%
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified	2.96%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.48%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	1.48%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.74%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.74%
Composting	Engineered → Solid Waste → Grass → Composting	0.74%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	14.07%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	14.07%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.33%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	8.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.15%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.93%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.19%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.70%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	2.22%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	2.22%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.96%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.96%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	2.96%
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified	2.96%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.48%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.48%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	1.48%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.74%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.74%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.74%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.74%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.15%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.19%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.44%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	4.44%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	4.44%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	4.44%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	4.44%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.70%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.70%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	2.22%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	2.22%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.22%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.22%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	2.22%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	2.22%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.22%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.22%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.22%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.96%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.96%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.96%
Anaerobic Digestor Sludge	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge	2.96%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.48%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.48%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.48%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.48%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.48%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.48%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	0.74%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.74%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.74%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.74%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.74%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.74%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.74%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.74%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.74%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.74%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.74%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.74%
Activated Sludge	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge	0.74%
Active Sludge	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Active Sludge	0.74%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459019	Litter degradation MG4	Engineered	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300004778	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare3Fresh	Environmental	Open in IMG/M
3300005147	Soil and rhizosphere microbial communities from Laval, Canada - mgLMC	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009658	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNTR2_MetaG	Engineered	Open in IMG/M
3300009711	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNMR2_MetaG	Engineered	Open in IMG/M
3300009776	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC030_MetaG	Engineered	Open in IMG/M
3300009870	Activated sludge microbial diversity in wastewater treatment plant from Taiwan - Linkou plant	Engineered	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300012045	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ449 (21.06)	Environmental	Open in IMG/M
3300012046	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ833 (21.06)	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012533	Active sludge microbial communities from wastewater in Klosterneuburg, Austria - KNB2014incub_MG	Engineered	Open in IMG/M
3300012904	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S029-104C-1	Environmental	Open in IMG/M
3300012916	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S213-509R-2	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015201	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300017789	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ322 (21.06)	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300025715	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC030_MetaG (SPAdes)	Engineered	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)	Environmental	Open in IMG/M
3300027695	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes)	Host-Associated	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300029990	I_Fen_N2 coassembly	Environmental	Open in IMG/M
3300030339	III_Bog_N1 coassembly	Environmental	Open in IMG/M
3300030838	I_Fen_N1 coassembly	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031722	II_Fen_N3 coassembly	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300032164	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_0	Environmental	Open in IMG/M
3300032275	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_bottom	Environmental	Open in IMG/M
3300032397	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_0	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300033521	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D1_B	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
4MG_02169140	2170459019	Switchgrass, Maize And Mischanthus Litter	MRADTNHRYTTSLAVRDQMVAKGYVPEGSGAAGRVFCAPL
F14TC_1022578502	3300000559	Soil	GVPIYRVWNKRKDANHRYTTXIAVRDQMVARGGVAVGYGPNAVVLCGLP*
Ga0062383_105246972	3300004778	Wetland Sediment	VNRVWNRRADSNHRYTTDRALRDGMVARGYAAEGYGPDAVAMCAAP*
Ga0066821_10279342	3300005147	Soil	TVPVYRVWNNRVDSNHRYTTSLATRDAMVAMGYVKEGYGPNFVIMCAVP*
Ga0070676_113790242	3300005328	Miscanthus Rhizosphere	FNQRKDANHRYTTSIAIRNQMVARGGVAEGYGPNAVVLCGLA*
Ga0070683_1009484552	3300005329	Corn Rhizosphere	DNRADANHRYTTSRAIRDQMVAMGYIAEGYGDDAVIMCAPA*
Ga0070690_1007028601	3300005330	Switchgrass Rhizosphere	PVYRVWNKRTDSNHRYTTSMAVRDQMVARGYIAEGYGPNNVTLCALP*
Ga0066388_1009070611	3300005332	Tropical Forest Soil	PDGNHRYTTDPAIRDQMVARGGIAEGYGPNAVIMCAPATATS*
Ga0070660_1018193351	3300005339	Corn Rhizosphere	VWNQRYDSNHRYTTSTAIRDQMVQKGGIAEGYGPGAVALCALP*
Ga0070671_1008543802	3300005355	Switchgrass Rhizosphere	RADTNHRYTTSLAVRDQMVAKGYVPEGSGPQAVVFCAPL*
Ga0070671_1010462361	3300005355	Switchgrass Rhizosphere	IWNNRADSNHRYTTSMTMRDQMIAKGYVVEGYGSNGIALCALP*
Ga0070674_1013298721	3300005356	Miscanthus Rhizosphere	VPIYRVFNQRKDANHRYTTSLAIRNQMVAKGGVAEGYGPNAVVLCGL*
Ga0070674_1020434891	3300005356	Miscanthus Rhizosphere	WNHRADTNHRYTASRDVRDAMVAQGYVAEGSGPDVVTFCAPR*
Ga0070659_1012004982	3300005366	Corn Rhizosphere	TTPVYRTWNQRADSNHRYTAVREIRDGMVARGYVAEGYGPDAVAMCAPR*
Ga0070705_1006461771	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	NNRRDSNHRYTTKTAIRDQMVAKGGVAEGYGASAVALCGLP*
Ga0066682_108146782	3300005450	Soil	PVYRVWNDRYDSNHRYTTSRTLRDQMLARGFLAEGYGADVVVMCAAQ*
Ga0070678_1011242211	3300005456	Miscanthus Rhizosphere	PVYRVWNARADNNHRYMTDKSIRDDMVAAGGIAEGYGADMVIMCAVP*
Ga0070685_111291482	3300005466	Switchgrass Rhizosphere	RVWNARADSNHRYTTSKSVRDQMIAKGYVAEGYGPDGVAMCAGGND*
Ga0068853_1004273613	3300005539	Corn Rhizosphere	VPVYRVWNARTDSNHRYTTSIATRDQMVARGYIAEGYGPDNVTLCGLQ*
Ga0066697_102053681	3300005540	Soil	RADTNHRYTTSLAIRAQMLAKGYIAEGYGPNAVSMCAAQAG*
Ga0066697_102063882	3300005540	Soil	LIPLYRVWNQRTDSNHRYVTDRHVRDQMVAARGYVAEGYGPNAVTMCVTPFFDC*
Ga0066697_106793451	3300005540	Soil	VYRVWNDRYDSNHRYTTSRTLRDQMLARGYLAEGYGADVVVMCAAQ*
Ga0070686_1003647581	3300005544	Switchgrass Rhizosphere	GGVPIYRVFNQRKDVNHRYTTSTAIRDQMVAKGGVAEGYGANAVALCGLP*
Ga0070665_1022966142	3300005548	Switchgrass Rhizosphere	APIYRVWNNRSDSNHRYVKDRALRDSMVAKGYVAEGYGPDGVIMCAAQ*
Ga0070704_1021089282	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	NVPVYRTWNGRADSNHRYMTSMPMRDQMIAKGHIAEGYGPNNVTLCALQ*
Ga0066707_103908993	3300005556	Soil	DSNHRYTTSLTIRSQMLAKGYLAEGYGPVPVSMCAAW*
Ga0068857_1025353421	3300005577	Corn Rhizosphere	HRYTTSLAIRNQMVAKGGIAEGYGPNAVVLCGLP*
Ga0068854_1017583232	3300005578	Corn Rhizosphere	SNHRYTTSIADRDAMVAKGYIKEGYGPQSVTLCALP*
Ga0070702_1017800711	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	VWNNRADSNHRYTTSIADRDAMVAKGYVKEGYGPQSVTLCALP*
Ga0068852_1004630063	3300005616	Corn Rhizosphere	IWNKRTDSNHRYTTKSAIRDQMVAKGGIAEGYGPNAVALCGLP*
Ga0068859_1026001222	3300005617	Switchgrass Rhizosphere	NRRRDSNHRYTTSATIRDQMVQKGGIAEGYGPNAVALCALQ*
Ga0066903_1065667092	3300005764	Tropical Forest Soil	NRADTNHRYTTSLAIRSQMLQKGYIAEGYGLTGVAMCAAQLPAAVQ*
Ga0066903_1070986652	3300005764	Tropical Forest Soil	IYRVWNNRADSNHRYTPSRTIRDQMVAKGYIAEGYGPDNVTLCGLP*
Ga0068851_105988072	3300005834	Corn Rhizosphere	SSGVAIYRVWNNRADSNHRYTTSIADRDAMVAKGYIKEGYGPNSVTLCAVP*
Ga0068863_1004654822	3300005841	Switchgrass Rhizosphere	NHRYTTSIADRDAMVAKGYIKEGYGPQSVTLCALP*
Ga0068860_1009602993	3300005843	Switchgrass Rhizosphere	VYRVWNQRRDSNHRYTTSVAIRDQMVAKGGVAEGYGANAVALCGLP*
Ga0068862_1024178072	3300005844	Switchgrass Rhizosphere	REDSNHRYTTSIAIRDQMVAKGGVAEGYGPNSVALCGLS*
Ga0097621_1018068182	3300006237	Miscanthus Rhizosphere	NQRKDANHRYATSIAIRDEMVSRGGVAEGYGPTSVALCALP*
Ga0068871_1012694742	3300006358	Miscanthus Rhizosphere	RADANHRYTTSLAVRDQMVAKGYVPEGSGPDAVVFCAPL*
Ga0068871_1017355022	3300006358	Miscanthus Rhizosphere	SGGVPIYRIFNQRKDANHRYTTSVVIRDQMVARGGVAEGYGPNAVALCGLP*
Ga0066665_112448751	3300006796	Soil	NRADTNHRYTTSPTIRSQMIAKGYIPEGYGPNAVAMCAAL*
Ga0079220_112014372	3300006806	Agricultural Soil	VYRVWNARPDSNHRYTTQAAIRDQMVARGGIAEGYGPDAVSMCVPQ*
Ga0075424_1003217513	3300006904	Populus Rhizosphere	SGHRYMTSRAVRDQMVAEGYIAEGYGNDQVAFCAPQ*
Ga0074063_123330571	3300006953	Soil	PVYRVWNNRADSNHRYTTSIAIRDQMVAKGGIAEGYGPNNVIMCAAP*
Ga0074063_137844631	3300006953	Soil	DSNHRYTTSVATRDAMVAMGYVKEGYGPNFVIMCAVP*
Ga0079219_115114631	3300006954	Agricultural Soil	RADANHRYTTSTVIRDQMVARGYIAEGYGPNNVTLCGLP*
Ga0099829_109280462	3300009038	Vadose Zone Soil	NRADTNHRYTTSLTIRSQMLAKGYVAEGYGPNPVSMCAAW*
Ga0111539_135180411	3300009094	Populus Rhizosphere	NAAPVYRIWNQRSDSNHRYTIDPSIRDRMVREGGVAEGYGPNAVALCGLP*
Ga0105245_121675812	3300009098	Miscanthus Rhizosphere	YRVWNRRADANHRYTTSTAIRDQMVQRGGVAEGFGPNPVALCALP*
Ga0075418_113807931	3300009100	Populus Rhizosphere	ASGGLPIYRVWNNRTDSNHRYTTSIADRDAMVAKGYIKEGYGVNAVTLCAVP*
Ga0075418_115673991	3300009100	Populus Rhizosphere	DNNHRYTTDKGIRDQMIVAGGIAEGYGPDAVIMCAAP*
Ga0105243_116881381	3300009148	Miscanthus Rhizosphere	VPIYRVWNNRADSNHRYTTSIADRDAMVAKGYIKEGYGPQSVTLCALP*
Ga0105248_122796672	3300009177	Switchgrass Rhizosphere	DSNHRYTTSKGIRDQMIVQGHVAEGYGPDGVALCALQ*
Ga0105248_129485982	3300009177	Switchgrass Rhizosphere	DSNHRYTTSIAIRDAMVQKGGVAEGYGPNAVALCALP*
Ga0116188_13245072	3300009658	Anaerobic Digestor Sludge	YRVLNGRRDANHRYVASRALRDSMVAAGWIAEGYGPAQVAMCSPARSAP*
Ga0116166_11621431	3300009711	Anaerobic Digestor Sludge	NHRYTTSTTVRAQMEAAGWIREGYGPNATIMCAVGAP*
Ga0116154_101837591	3300009776	Anaerobic Digestor Sludge	PDTNHRYTSDRAVRDAMVALGYVAEGSGPDIVTFCAPR*
Ga0131092_104703743	3300009870	Activated Sludge	HRYTTDIAVRDAMVAKGYVAEGSGPNAVTFCSPQ*
Ga0126314_112310052	3300010042	Serpentine Soil	SNHRYTTSTAVRDQMVARGGVAEGYGPNAVALCGLP*
Ga0105239_118135461	3300010375	Corn Rhizosphere	RADTNHRYTTSLSLRDTMVAQGYVSEGYGPYGVAFCVPTF*
Ga0126383_112420762	3300010398	Tropical Forest Soil	MTLFTTSSAIRAQMEAMGWVAEGYGPGQVIMCAAQ*
Ga0134127_115276461	3300010399	Terrestrial Soil	RRPDTNHRYTTSAAVRDQMVAAGGVAEGYGPNAVAMCAPR*
Ga0136623_104097302	3300012045	Polar Desert Sand	VWNNRADSNHRYTTDRTIREAMVAKGGVAEGYGVVGVSMCAIP*
Ga0136634_102804981	3300012046	Polar Desert Sand	ADSNHRYTTDPAIRDMMVAQGGIAEGYGPDRVIMCAPQ*
Ga0137384_114405483	3300012357	Vadose Zone Soil	VWNDRADSNHRYTTDRATRDAMVAMGYIAEGYGPTQVSMCAAQAG*
Ga0138256_102422551	3300012533	Active Sludge	RAWNRRPDTNHRYTSERSVRDAMVALGYLAEGSGPDVVTFCAPR*
Ga0157282_101895381	3300012904	Soil	NHRYTTSLAVRDQMVNKGYVPEGSGPDAVVFCAPL*
Ga0157310_102183633	3300012916	Soil	SNHRYTTSIADRDAMVAKGYVKEGYGPNSVTLCALP*
Ga0157374_129079781	3300013296	Miscanthus Rhizosphere	VPVYRVFNQRTDANHRYTTSIAIRDQMVAKGGIAEGYGPNAITLCGLP*
Ga0163162_114631661	3300013306	Switchgrass Rhizosphere	DANHRYTTSIAIRDEMVARGGVAEGYGPNAVVLCGLP*
Ga0163162_119350061	3300013306	Switchgrass Rhizosphere	SNHRYTSKIAIRDQMVARGGIAEGYGPNAVVLCGLP*
Ga0163162_128917102	3300013306	Switchgrass Rhizosphere	DSNHRYTTKTSIRDQMVAKGGVAEGYGANAVALCALP*
Ga0163162_128955281	3300013306	Switchgrass Rhizosphere	PAGDVPVYRVWNQRYDSNHRYTTSTAIRDQMVQKGGVAEGYGPTAVALCALP*
Ga0163162_129059331	3300013306	Switchgrass Rhizosphere	VPIYRIFNQRADVNHRYTTSTAIRDQMVAKGGVAEGYGPNAVTLCGLP*
Ga0157372_132477991	3300013307	Corn Rhizosphere	ADTNHRYTTSLSLRDTMVAQGYVSEGYGPYGVAFCVPTF*
Ga0163163_105915894	3300014325	Switchgrass Rhizosphere	DANHRYTTSRAIRDQMVAMGYIAEGYGDDAVIMCAPA*
Ga0182008_102983302	3300014497	Rhizosphere	TDANHRYTTSIAIRDQMVARGGIGEGYGPNAVALCGLP*
Ga0182008_103786511	3300014497	Rhizosphere	TCAPGQIAVYRVWNARRDSDHRYTTQVAIRDAMVARGGIAEGYGPDAVAMCAPQ*
Ga0157376_102736774	3300014969	Miscanthus Rhizosphere	VPIYRVFNQRKDANHRYTTSTAIRDQMVAKGGVAEGYGPNAVALCGLH*
Ga0157376_130930371	3300014969	Miscanthus Rhizosphere	IWNQRSDSNHRYTIDPSIRDRMVREGGAAEGYGPNAVALCGLP*
Ga0173483_106124311	3300015077	Soil	PIYRVWNNRADSNHRYTTTIADRDAMVAKGYIKEGYGPNAVTLCALP*
Ga0173478_105939402	3300015201	Soil	VWNQRRDSNHRYTTSVAIRYQMVAKGGVAEGYGPNAV
Ga0132258_113037033	3300015371	Arabidopsis Rhizosphere	ARVDSNHRYTTSPAIRDLMRAQGYVAEGSGSGVVAMCVGGGLGNE*
Ga0182032_107961781	3300016357	Soil	RPDGNHRYSTDPAIRDQMVARGGIAEGYGPNAVIMCAPATATS
Ga0182034_100520921	3300016371	Soil	PDGNHRYTTDPAIRDQMVAAGGIAEGYGPNAVIMCAPQ
Ga0136617_113554021	3300017789	Polar Desert Sand	VWNNRADSNHRYTTDPAIRDAMVALGGIAEGYGPDRVIMCAPQ
Ga0163161_119850731	3300017792	Switchgrass Rhizosphere	QRKDANHRYTTSIAIRDQMVARGGVAEGYGPNAVVLCGLP
Ga0190270_112357411	3300018469	Soil	NHRYVTSRALRDQMLYRGYIAEGYGTDEVIMCAGG
Ga0190274_127085721	3300018476	Soil	NTTPIYRVWNKRVDSNHRYLANRALRDVMVARGYVAEGYGPDAVVMCGP
Ga0190271_108406893	3300018481	Soil	VYRTWNRRADTNHRYTSNIGVRDQMVALGHVAEGSGPNVVTFCAPL
Ga0190271_112633972	3300018481	Soil	PQNMVPVYRLWNNRSDSNHRYTNHRSTRDEMVAKGYVVEGYGVDPVIMCGAP
Ga0190271_138240702	3300018481	Soil	YVPVYRVWNNRGDSNHRYMTDKALRDSMVAAGGIAEGYGPDQVILCAAP
Ga0173479_101770812	3300019362	Soil	VWNRRLADTNHRYTASRAIRDAMVAQGYVAEGSGPDVVTFCAPR
Ga0209310_12117811	3300025715	Anaerobic Digestor Sludge	PDTNHRYTSDRAVRDAMVALGYVAEGSGPDIVTFCAPR
Ga0207654_101055812	3300025911	Corn Rhizosphere	VFDNRADANHRYTTSRAIRDQMVALGYIAEGYGNDAVIMCAAA
Ga0207662_112574762	3300025918	Switchgrass Rhizosphere	RRDSNHRYTTSVAIRDQMVAKGGVAEGYGANAVALCGLP
Ga0207646_104442071	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	DTNHRYTTSLAIRSQMIAKGYIPEGYGPNSVGMCAAL
Ga0207659_102022471	3300025926	Miscanthus Rhizosphere	SGVAIYRVWNNRADSNHRYTTSIADRDAMVAKGYIKEGYGPNSVTLCAVP
Ga0207644_115636582	3300025931	Switchgrass Rhizosphere	DTNHRYTTSAAVRDQMVAAGGVAEGYGPNAVAMCAPR
Ga0207686_100327204	3300025934	Miscanthus Rhizosphere	PDTNHRYTTSAAVRDEMVAAGGVAEGYGPNAVAMCAPR
Ga0207711_117019661	3300025941	Switchgrass Rhizosphere	RIWNQRRDSNHRYTTSIAIRDAMVQKGGVAEGYGPNAVALCALP
Ga0207651_103799472	3300025960	Switchgrass Rhizosphere	NRADSNHRYTTSIADRDAMVAKGYIKEGYGPQSVTLCALP
Ga0207668_108751492	3300025972	Switchgrass Rhizosphere	TNHRYTTSQEIRDRMVVRGYVAEGYGPSPVAWCVAP
Ga0207639_112518572	3300026041	Corn Rhizosphere	RDSNHRYTTKIAIRDQMVAKGGVAEGYGPNAVALCGLP
Ga0207708_117731302	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	RADTNHRYTSSRTVRDTMVAQGYVAEGSGPDIVTFCAPR
Ga0207708_119016021	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	RLDSNHRYTTSIATRNQMIAKGHVAEGYGPNAVALCGLS
Ga0207641_100887252	3300026088	Switchgrass Rhizosphere	VWNQRADSNHRYVTTLGLRDQMVAKGYVAEGYGPNAVTLCASQ
Ga0207683_108597952	3300026121	Miscanthus Rhizosphere	NHRPDTGHRYTIDPAVRDQMVALGYVPEGAGPQAVAMCAPA
Ga0209375_13174742	3300026329	Soil	VYRVWNDRYDSNHRYTTSRTLRDQMLARGFLAEGYGADVVVMCAAQ
Ga0209966_10106981	3300027695	Arabidopsis Thaliana Rhizosphere	RPDTNHRYTTDIGVRDGMVAKGYIAEGSGPDAVTFCAPL
Ga0209465_103379602	3300027874	Tropical Forest Soil	PDGNHRYTTDPAIRDQMVARGGIAEGYGPNAVIMCAPATATS
Ga0268265_120791631	3300028380	Switchgrass Rhizosphere	VFNQRKDANHRYTTSIAIRDQMVAKGGIAEGYGPDAVVLCGLP
Ga0247827_111801831	3300028889	Soil	VWNKRADTNHRYTTSLAVRDQMVAKGYVPEGSGPDAVVFCAPL
Ga0311336_111263191	3300029990	Fen	VYRVWNTRRDSNHRYMTDRSLRDLMVAKGYVAEGYGQDAVIMCAPM
Ga0311360_100393424	3300030339	Bog	SVPIYRVWNRRVDSNHRYTTDRALRDAMVARGYVAEGYGPDTVGMCGPR
Ga0311335_111587192	3300030838	Fen	ANGVPVYRAWNGGADSNHRYMTSLAIRAQMQGRGYIAEGYGPNQVTLCALP
Ga0318516_101446083	3300031543	Soil	DTNHRYTTSLATKQQMQATGWVAEGYGPSQVIMCAPQ
Ga0310915_101754453	3300031573	Soil	NTIPVYRVFNNRPDGNHRYSTDPAIRDQMVARGGIAEGYGPNAVIMCAPATATS
Ga0318496_108295152	3300031713	Soil	RVFNNRPDGNHRYSTDPAIRDQMVARGGIAEGYGPNAVIMCAPATATS
Ga0310813_118185161	3300031716	Soil	DTNHRYTASRAIRDAMVAQGYVAEGSGPDVVTFCAPR
Ga0306917_113788492	3300031719	Soil	STDPAIRDQMVARGGIAEGYGPNAVIMCAPATATS
Ga0311351_107652312	3300031722	Fen	VPVYRVWNGLAAANHRYTTRRDIRDAMVAQGWIAEGTGPNAVTMCAPQ
Ga0318546_112738661	3300031771	Soil	GWTPVYRVWNQRADSNHRYMTDRALRDAMVAQGYVAEGYGPDAVIMCAPP
Ga0310885_106494662	3300031943	Soil	RVFNDRHDANHRYTTSVAIRDTMVALGWRREGYGPDATIMCATSP
Ga0308176_103673832	3300031996	Soil	VFRVWNARADSNPRYTASRSVRDTMVAAGGVAEGFGPDAVAMCAPQ
Ga0318575_105131751	3300032055	Soil	ADTNHRYTTSLATKQQMQATGWVAEGYGPSQVIMCAPQ
Ga0308173_101195363	3300032074	Soil	RADANHRYTTSRAIRDQMVAMGYIAEGYGDDAVIMCAPA
Ga0315283_105593673	3300032164	Sediment	RADTNHRYMTSAAVRANMVASGWVAEGYGPDQVIMCAPK
Ga0315270_110137243	3300032275	Sediment	PVYRVWNQRADSNHRYTADRSVRDAMVVHNYLAEGYGPDNVIMCAPA
Ga0315287_122133631	3300032397	Sediment	AGGAAPAPRSNHRYTTSTTIRDAMVAKGGIAEGYGPNAVIMCAPQ
Ga0335082_101848001	3300032782	Soil	WNQRVDSNHRYTTSIAIRDQMVAKGGVAEGYGPNAVALCALP
Ga0335079_121587221	3300032783	Soil	DSNHRYTVSLTIRQQMIDAGWVAEGYGPNAVIMCAPA
Ga0335070_112651831	3300032829	Soil	DARADTNHRYTTSTVVRAQMEAQGWVAEGYGPAQVIMCAPQ
Ga0335083_109496581	3300032954	Soil	YRVWNQRADSNHRYTTSLALRDQMVAQGWLAEGYGPNAVVLCGVM
Ga0316616_1025467482	3300033521	Soil	PDANHRYTTDRGVRDLMVSLGGTAEGYGDDAVIMCAPPGTSTAP

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.46
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.46
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F058226

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign