NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F057775

Metagenome / Metatranscriptome Family F057775

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F057775
Family Type Metagenome / Metatranscriptome
Number of Sequences 136
Average Sequence Length 41 residues
Representative Sequence MFLFRLFRSFLPLHNPIGFGASDFIELAFAVLLVLLVLA
Number of Associated Samples 113
Number of Associated Scaffolds 136

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 76.12 %
% of genes near scaffold ends (potentially truncated) 97.06 %
% of genes from short scaffolds (< 2000 bps) 90.44 %
Associated GOLD sequencing projects 111
AlphaFold2 3D model prediction Yes
3D model pTM-score0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (88.235 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil
(15.441 % of family members)
Environment Ontology (ENVO) Unclassified
(34.559 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(30.147 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 44.78%    β-sheet: 0.00%    Coil/Unstructured: 55.22%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.47
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 136 Family Scaffolds
PF06808DctM 3.68
PF00072Response_reg 2.21
PF00478IMPDH 2.21
PF00004AAA 2.21
PF13229Beta_helix 2.21
PF13649Methyltransf_25 2.21
PF05167DUF711 1.47
PF064393keto-disac_hyd 1.47
PF06964Alpha-L-AF_C 1.47
PF01850PIN 1.47
PF08242Methyltransf_12 1.47
PF01558POR 1.47
PF01402RHH_1 1.47
PF00583Acetyltransf_1 1.47
PF00034Cytochrom_C 1.47
PF05592Bac_rhamnosid 0.74
PF00924MS_channel 0.74
PF01175Urocanase 0.74
PF00593TonB_dep_Rec 0.74
PF01625PMSR 0.74
PF16861Carbam_trans_C 0.74
PF01934HepT-like 0.74
PF08241Methyltransf_11 0.74
PF02610Arabinose_Isome 0.74
PF03193RsgA_GTPase 0.74
PF03938OmpH 0.74
PF01266DAO 0.74
PF10502Peptidase_S26 0.74
PF01244Peptidase_M19 0.74
PF09285Elong-fact-P_C 0.74
PF00326Peptidase_S9 0.74
PF00015MCPsignal 0.74
PF12867DinB_2 0.74
PF01814Hemerythrin 0.74
PF16576HlyD_D23 0.74
PF00106adh_short 0.74
PF04365BrnT_toxin 0.74
PF02627CMD 0.74
PF00196GerE 0.74
PF13462Thioredoxin_4 0.74
PF13489Methyltransf_23 0.74
PF09371Tex_N 0.74
PF11700ATG22 0.74
PF13646HEAT_2 0.74
PF01894UPF0047 0.74
PF13620CarboxypepD_reg 0.74
PF01014Uricase 0.74
PF09335SNARE_assoc 0.74
PF03992ABM 0.74
PF00133tRNA-synt_1 0.74
PF03069FmdA_AmdA 0.74
PF01565FAD_binding_4 0.74
PF13517FG-GAP_3 0.74

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 136 Family Scaffolds
COG3534Alpha-L-arabinofuranosidaseCarbohydrate transport and metabolism [G] 1.47
COG2848Uncharacterized conserved protein, UPF0210 familyCell cycle control, cell division, chromosome partitioning [D] 1.47
COG0840Methyl-accepting chemotaxis protein (MCP)Signal transduction mechanisms [T] 1.47
COG1014Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, gamma subunitEnergy production and conversion [C] 1.47
COG2128Alkylhydroperoxidase family enzyme, contains CxxC motifInorganic ion transport and metabolism [P] 0.74
COG3648Uricase (urate oxidase)Secondary metabolites biosynthesis, transport and catabolism [Q] 0.74
COG3408Glycogen debranching enzyme (alpha-1,6-glucosidase)Carbohydrate transport and metabolism [G] 0.74
COG3264Small-conductance mechanosensitive channel MscKCell wall/membrane/envelope biogenesis [M] 0.74
COG2987Urocanate hydrataseAmino acid transport and metabolism [E] 0.74
COG2929Ribonuclease BrnT, toxin component of the BrnT-BrnA toxin-antitoxin systemDefense mechanisms [V] 0.74
COG2825Periplasmic chaperone for outer membrane proteins, Skp familyCell wall/membrane/envelope biogenesis [M] 0.74
COG2445Uncharacterized HEPN domain protein YutE, UPF0331/DUF86 familyGeneral function prediction only [R] 0.74
COG2421Acetamidase/formamidaseEnergy production and conversion [C] 0.74
COG2361HEPN domain protein, predicted toxin of MNT-HEPN systemDefense mechanisms [V] 0.74
COG2355Zn-dependent dipeptidase, microsomal dipeptidase homologPosttranslational modification, protein turnover, chaperones [O] 0.74
COG2160L-arabinose isomeraseCarbohydrate transport and metabolism [G] 0.74
COG0060Isoleucyl-tRNA synthetaseTranslation, ribosomal structure and biogenesis [J] 0.74
COG1238Uncharacterized membrane protein YqaA, VTT domainFunction unknown [S] 0.74
COG1162Ribosome biogenesis GTPase RsgATranslation, ribosomal structure and biogenesis [J] 0.74
COG0668Small-conductance mechanosensitive channelCell wall/membrane/envelope biogenesis [M] 0.74
COG0599Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase familyGeneral function prediction only [R] 0.74
COG0586Membrane integrity protein DedA, putative transporter, DedA/Tvp38 familyCell wall/membrane/envelope biogenesis [M] 0.74
COG0525Valyl-tRNA synthetaseTranslation, ribosomal structure and biogenesis [J] 0.74
COG0495Leucyl-tRNA synthetaseTranslation, ribosomal structure and biogenesis [J] 0.74
COG0432Thiamin phosphate synthase YjbQ, UPF0047 familyCoenzyme transport and metabolism [H] 0.74
COG0398Uncharacterized membrane protein YdjX, related to fungal oxalate transporter, TVP38/TMEM64 familyFunction unknown [S] 0.74
COG0225Peptide methionine sulfoxide reductase MsrAPosttranslational modification, protein turnover, chaperones [O] 0.74
COG0143Methionyl-tRNA synthetaseTranslation, ribosomal structure and biogenesis [J] 0.74

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms88.24 %
UnclassifiedrootN/A11.76 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001356|JGI12269J14319_10369449All Organisms → cellular organisms → Bacteria502Open in IMG/M
3300004643|Ga0062591_100182863All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1513Open in IMG/M
3300005467|Ga0070706_101472458Not Available622Open in IMG/M
3300005529|Ga0070741_11739601All Organisms → cellular organisms → Bacteria → Acidobacteria506Open in IMG/M
3300005532|Ga0070739_10139910All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia1300Open in IMG/M
3300005541|Ga0070733_10087658All Organisms → cellular organisms → Bacteria → Acidobacteria1975Open in IMG/M
3300005559|Ga0066700_10411301All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium953Open in IMG/M
3300005573|Ga0078972_1138231All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales1228Open in IMG/M
3300005577|Ga0068857_101526964All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium651Open in IMG/M
3300005952|Ga0080026_10265194All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia521Open in IMG/M
3300006052|Ga0075029_101171063All Organisms → cellular organisms → Bacteria → Acidobacteria536Open in IMG/M
3300006176|Ga0070765_100428607Not Available1237Open in IMG/M
3300006358|Ga0068871_102059321All Organisms → cellular organisms → Bacteria → Acidobacteria543Open in IMG/M
3300006797|Ga0066659_10513602All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae962Open in IMG/M
3300006903|Ga0075426_10604639All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium819Open in IMG/M
3300009012|Ga0066710_101861985All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium904Open in IMG/M
3300009038|Ga0099829_11745843All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium510Open in IMG/M
3300009038|Ga0099829_11771259All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium506Open in IMG/M
3300009635|Ga0116117_1143151All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia613Open in IMG/M
3300009638|Ga0116113_1173446All Organisms → cellular organisms → Bacteria548Open in IMG/M
3300009640|Ga0116126_1203242Not Available637Open in IMG/M
3300009644|Ga0116121_1092337All Organisms → cellular organisms → Bacteria → Acidobacteria947Open in IMG/M
3300009645|Ga0116106_1105486Not Available910Open in IMG/M
3300009698|Ga0116216_10667048All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA3625Open in IMG/M
3300009762|Ga0116130_1183618All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia662Open in IMG/M
3300010048|Ga0126373_13204197All Organisms → cellular organisms → Bacteria → Acidobacteria509Open in IMG/M
3300010361|Ga0126378_13472681All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia500Open in IMG/M
3300010373|Ga0134128_11441714All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium758Open in IMG/M
3300010376|Ga0126381_103635110All Organisms → cellular organisms → Bacteria → Acidobacteria604Open in IMG/M
3300010379|Ga0136449_101396283All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales1082Open in IMG/M
3300010379|Ga0136449_101656554All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium967Open in IMG/M
3300011270|Ga0137391_10074829All Organisms → cellular organisms → Bacteria2914Open in IMG/M
3300012200|Ga0137382_11209905All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium536Open in IMG/M
3300012961|Ga0164302_11357721All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium578Open in IMG/M
3300012971|Ga0126369_11489691All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium766Open in IMG/M
3300014151|Ga0181539_1049889All Organisms → cellular organisms → Bacteria1976Open in IMG/M
3300014152|Ga0181533_1228917All Organisms → cellular organisms → Bacteria703Open in IMG/M
3300014155|Ga0181524_10192491All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae1007Open in IMG/M
3300014156|Ga0181518_10396508All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia668Open in IMG/M
3300014158|Ga0181521_10065479All Organisms → cellular organisms → Bacteria2397Open in IMG/M
3300014159|Ga0181530_10347908All Organisms → cellular organisms → Bacteria → Acidobacteria765Open in IMG/M
3300014162|Ga0181538_10328825All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia825Open in IMG/M
3300014162|Ga0181538_10611780All Organisms → cellular organisms → Bacteria568Open in IMG/M
3300014164|Ga0181532_10020852All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter4749Open in IMG/M
3300014164|Ga0181532_10515055All Organisms → cellular organisms → Bacteria → Acidobacteria654Open in IMG/M
3300014164|Ga0181532_10797509All Organisms → cellular organisms → Bacteria506Open in IMG/M
3300014165|Ga0181523_10073967All Organisms → cellular organisms → Bacteria → Acidobacteria2072Open in IMG/M
3300014165|Ga0181523_10837101All Organisms → cellular organisms → Bacteria501Open in IMG/M
3300014199|Ga0181535_10398042Not Available807Open in IMG/M
3300014200|Ga0181526_10422887All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia845Open in IMG/M
3300014490|Ga0182010_10801025All Organisms → cellular organisms → Bacteria534Open in IMG/M
3300014491|Ga0182014_10271094All Organisms → cellular organisms → Bacteria882Open in IMG/M
3300014496|Ga0182011_10904206All Organisms → cellular organisms → Bacteria → Acidobacteria549Open in IMG/M
3300014502|Ga0182021_11301244All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia876Open in IMG/M
3300014638|Ga0181536_10532508All Organisms → cellular organisms → Bacteria508Open in IMG/M
3300014655|Ga0181516_10316559Not Available794Open in IMG/M
3300014658|Ga0181519_10399979All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia848Open in IMG/M
3300014658|Ga0181519_10612189All Organisms → cellular organisms → Bacteria671Open in IMG/M
3300014969|Ga0157376_11432713All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium723Open in IMG/M
3300016701|Ga0181509_1209850All Organisms → cellular organisms → Bacteria3118Open in IMG/M
3300016750|Ga0181505_10159725All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus → Candidatus Solibacter usitatus Ellin60761237Open in IMG/M
3300016750|Ga0181505_10618193All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia666Open in IMG/M
3300017925|Ga0187856_1254541All Organisms → cellular organisms → Bacteria618Open in IMG/M
3300017928|Ga0187806_1391797All Organisms → cellular organisms → Bacteria → Acidobacteria500Open in IMG/M
3300017933|Ga0187801_10475409All Organisms → cellular organisms → Bacteria → Acidobacteria527Open in IMG/M
3300017936|Ga0187821_10408711All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium557Open in IMG/M
3300017942|Ga0187808_10252858Not Available789Open in IMG/M
3300017946|Ga0187879_10355464Not Available812Open in IMG/M
3300017988|Ga0181520_11033862All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4542Open in IMG/M
3300018004|Ga0187865_1084993All Organisms → cellular organisms → Bacteria1185Open in IMG/M
3300018009|Ga0187884_10392057All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia559Open in IMG/M
3300018012|Ga0187810_10407650Not Available572Open in IMG/M
3300018015|Ga0187866_1118145All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales1070Open in IMG/M
3300018033|Ga0187867_10044025All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus2709Open in IMG/M
3300018035|Ga0187875_10407541All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia726Open in IMG/M
3300018044|Ga0187890_10692795All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia575Open in IMG/M
3300018046|Ga0187851_10836146All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium518Open in IMG/M
3300018433|Ga0066667_12063667All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium526Open in IMG/M
3300019786|Ga0182025_1272563All Organisms → cellular organisms → Bacteria3218Open in IMG/M
3300021384|Ga0213876_10507453All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium642Open in IMG/M
3300021420|Ga0210394_11565106All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium556Open in IMG/M
3300021476|Ga0187846_10437555All Organisms → cellular organisms → Bacteria → Acidobacteria536Open in IMG/M
3300021478|Ga0210402_11893611Not Available522Open in IMG/M
3300021560|Ga0126371_10754601All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter1120Open in IMG/M
3300021560|Ga0126371_12757281All Organisms → cellular organisms → Bacteria596Open in IMG/M
3300022516|Ga0224542_1038806All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia609Open in IMG/M
3300022840|Ga0224549_1020891All Organisms → cellular organisms → Bacteria904Open in IMG/M
3300023091|Ga0224559_1195746All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia700Open in IMG/M
3300025917|Ga0207660_11098864All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium648Open in IMG/M
3300025922|Ga0207646_11220850All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium659Open in IMG/M
3300026451|Ga0247845_1038290All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Bryocella → Bryocella elongata792Open in IMG/M
3300027846|Ga0209180_10684259All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium559Open in IMG/M
3300027853|Ga0209274_10668656All Organisms → cellular organisms → Bacteria → Acidobacteria536Open in IMG/M
3300027867|Ga0209167_10057186All Organisms → cellular organisms → Bacteria1927Open in IMG/M
3300027965|Ga0209062_1004177All Organisms → cellular organisms → Bacteria15526Open in IMG/M
3300028748|Ga0302156_10116122All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus1337Open in IMG/M
3300028874|Ga0302155_10457887All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia543Open in IMG/M
3300029910|Ga0311369_10179309All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales2000Open in IMG/M
3300029913|Ga0311362_11069959All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia620Open in IMG/M
3300029915|Ga0311358_10626674All Organisms → cellular organisms → Bacteria806Open in IMG/M
3300029999|Ga0311339_11938843All Organisms → cellular organisms → Bacteria → Acidobacteria507Open in IMG/M
3300030054|Ga0302182_10416073All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia562Open in IMG/M
3300031234|Ga0302325_10589656All Organisms → cellular organisms → Bacteria → Acidobacteria1641Open in IMG/M
3300031234|Ga0302325_10937166All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus1195Open in IMG/M
3300031234|Ga0302325_11786387All Organisms → cellular organisms → Bacteria772Open in IMG/M
3300031258|Ga0302318_10702391Not Available509Open in IMG/M
3300031525|Ga0302326_13038939All Organisms → cellular organisms → Bacteria → Acidobacteria571Open in IMG/M
3300031564|Ga0318573_10409160All Organisms → cellular organisms → Bacteria729Open in IMG/M
3300031711|Ga0265314_10368860Not Available785Open in IMG/M
3300031736|Ga0318501_10635272All Organisms → cellular organisms → Bacteria587Open in IMG/M
3300031820|Ga0307473_11000487All Organisms → cellular organisms → Bacteria → Acidobacteria610Open in IMG/M
3300032205|Ga0307472_102182021All Organisms → cellular organisms → Bacteria → Acidobacteria558Open in IMG/M
3300032770|Ga0335085_10600002All Organisms → cellular organisms → Bacteria → Acidobacteria1240Open in IMG/M
3300032770|Ga0335085_10997917All Organisms → cellular organisms → Bacteria905Open in IMG/M
3300032783|Ga0335079_10415217All Organisms → cellular organisms → Bacteria1448Open in IMG/M
3300032783|Ga0335079_12301668Not Available512Open in IMG/M
3300032805|Ga0335078_10429002All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1724Open in IMG/M
3300032805|Ga0335078_11306508All Organisms → cellular organisms → Bacteria827Open in IMG/M
3300032805|Ga0335078_11824996All Organisms → cellular organisms → Bacteria660Open in IMG/M
3300032829|Ga0335070_11915768All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium535Open in IMG/M
3300032892|Ga0335081_11184994All Organisms → cellular organisms → Bacteria872Open in IMG/M
3300032892|Ga0335081_11423441All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia773Open in IMG/M
3300032892|Ga0335081_12558435All Organisms → cellular organisms → Bacteria525Open in IMG/M
3300032893|Ga0335069_10078557All Organisms → cellular organisms → Bacteria4223Open in IMG/M
3300032893|Ga0335069_11148668All Organisms → cellular organisms → Bacteria → Acidobacteria853Open in IMG/M
3300032893|Ga0335069_11749144All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium662Open in IMG/M
3300032954|Ga0335083_10709860All Organisms → cellular organisms → Bacteria816Open in IMG/M
3300033134|Ga0335073_11665777Not Available604Open in IMG/M
3300033158|Ga0335077_10077240All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus3962Open in IMG/M
3300033158|Ga0335077_10324088All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia1678Open in IMG/M
3300033158|Ga0335077_10587774All Organisms → cellular organisms → Bacteria1164Open in IMG/M
3300033158|Ga0335077_11490798All Organisms → cellular organisms → Bacteria → Acidobacteria648Open in IMG/M
3300033405|Ga0326727_10286668All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia1642Open in IMG/M
3300033433|Ga0326726_11324965All Organisms → cellular organisms → Bacteria → Acidobacteria701Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil15.44%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog14.71%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland8.82%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa5.15%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland4.41%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil4.41%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment3.68%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil3.68%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil3.68%
BogEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Bog3.68%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil2.94%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil2.94%
SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Soil2.94%
FenEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Fen2.21%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil1.47%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil1.47%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil1.47%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil1.47%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere1.47%
Peat SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil1.47%
Hot SpringEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring0.74%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds0.74%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.74%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.74%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil0.74%
Permafrost SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil0.74%
BogEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Bog0.74%
PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost0.74%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.74%
BiofilmEnvironmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm0.74%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere0.74%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere0.74%
Plant RootsHost-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots0.74%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere0.74%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.74%
RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere0.74%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.74%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001356Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007EnvironmentalOpen in IMG/M
3300004643Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3EnvironmentalOpen in IMG/M
3300005467Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaGEnvironmentalOpen in IMG/M
3300005529Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1EnvironmentalOpen in IMG/M
3300005532Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1EnvironmentalOpen in IMG/M
3300005541Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1EnvironmentalOpen in IMG/M
3300005559Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149EnvironmentalOpen in IMG/M
3300005573Hot spring thermophilic microbial communities from Obsidian Pool, Yellowstone National Park, USA - OP-RAMG-01 (SPADES assembly)EnvironmentalOpen in IMG/M
3300005577Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2Host-AssociatedOpen in IMG/M
3300005952Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-045EnvironmentalOpen in IMG/M
3300006052Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013EnvironmentalOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300006358Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2Host-AssociatedOpen in IMG/M
3300006797Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108EnvironmentalOpen in IMG/M
3300006903Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5Host-AssociatedOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009635Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_10EnvironmentalOpen in IMG/M
3300009638Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_10EnvironmentalOpen in IMG/M
3300009640Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_40EnvironmentalOpen in IMG/M
3300009644Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_10EnvironmentalOpen in IMG/M
3300009645Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_40EnvironmentalOpen in IMG/M
3300009698Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaGEnvironmentalOpen in IMG/M
3300009762Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_40EnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010373Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300011270Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaGEnvironmentalOpen in IMG/M
3300012200Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012961Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MGEnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300014151Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_60_metaGEnvironmentalOpen in IMG/M
3300014152Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_60_metaGEnvironmentalOpen in IMG/M
3300014155Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_60_metaGEnvironmentalOpen in IMG/M
3300014156Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaGEnvironmentalOpen in IMG/M
3300014158Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaGEnvironmentalOpen in IMG/M
3300014159Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaGEnvironmentalOpen in IMG/M
3300014162Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaGEnvironmentalOpen in IMG/M
3300014164Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaGEnvironmentalOpen in IMG/M
3300014165Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaGEnvironmentalOpen in IMG/M
3300014199Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_30_metaGEnvironmentalOpen in IMG/M
3300014200Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaGEnvironmentalOpen in IMG/M
3300014490Permafrost microbial communities from Stordalen Mire, Sweden - 611E1M metaGEnvironmentalOpen in IMG/M
3300014491Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaGEnvironmentalOpen in IMG/M
3300014496Permafrost microbial communities from Stordalen Mire, Sweden - 711E1D metaGEnvironmentalOpen in IMG/M
3300014502Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014638Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaGEnvironmentalOpen in IMG/M
3300014655Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_10_metaGEnvironmentalOpen in IMG/M
3300014658Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_10_metaGEnvironmentalOpen in IMG/M
3300014969Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaGHost-AssociatedOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300016701Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_30_metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300016750Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300017925Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40EnvironmentalOpen in IMG/M
3300017928Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1EnvironmentalOpen in IMG/M
3300017933Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1EnvironmentalOpen in IMG/M
3300017936Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1EnvironmentalOpen in IMG/M
3300017942Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3EnvironmentalOpen in IMG/M
3300017946Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10EnvironmentalOpen in IMG/M
3300017988Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaGEnvironmentalOpen in IMG/M
3300018004Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_100EnvironmentalOpen in IMG/M
3300018009Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_40EnvironmentalOpen in IMG/M
3300018012Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5EnvironmentalOpen in IMG/M
3300018015Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_150EnvironmentalOpen in IMG/M
3300018033Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10EnvironmentalOpen in IMG/M
3300018035Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10EnvironmentalOpen in IMG/M
3300018044Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10EnvironmentalOpen in IMG/M
3300018046Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10EnvironmentalOpen in IMG/M
3300018433Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116EnvironmentalOpen in IMG/M
3300019786Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction)EnvironmentalOpen in IMG/M
3300021384Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9Host-AssociatedOpen in IMG/M
3300021420Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-MEnvironmentalOpen in IMG/M
3300021476Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)EnvironmentalOpen in IMG/M
3300021478Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-MEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300022516Peat soil microbial communities from Stordalen Mire, Sweden - 717 E3 30-34EnvironmentalOpen in IMG/M
3300022840Peat soil microbial communities from Stordalen Mire, Sweden - 717 P3 1-5EnvironmentalOpen in IMG/M
3300023091Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 30-34EnvironmentalOpen in IMG/M
3300025917Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025922Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026451Peat soil microbial communities from Stordalen Mire, Sweden - P.F.S.T-25EnvironmentalOpen in IMG/M
3300027846Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027853Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)EnvironmentalOpen in IMG/M
3300027867Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027965Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen12_06102014_R2 (SPAdes)EnvironmentalOpen in IMG/M
3300028748Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_2EnvironmentalOpen in IMG/M
3300028874Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_1EnvironmentalOpen in IMG/M
3300029910III_Palsa_E2 coassemblyEnvironmentalOpen in IMG/M
3300029913III_Bog_N3 coassemblyEnvironmentalOpen in IMG/M
3300029915III_Bog_E1 coassemblyEnvironmentalOpen in IMG/M
3300029999I_Palsa_E3 coassemblyEnvironmentalOpen in IMG/M
3300030054Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_1EnvironmentalOpen in IMG/M
3300031234Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2EnvironmentalOpen in IMG/M
3300031258Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_1EnvironmentalOpen in IMG/M
3300031525Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3EnvironmentalOpen in IMG/M
3300031564Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21EnvironmentalOpen in IMG/M
3300031711Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaGHost-AssociatedOpen in IMG/M
3300031736Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21EnvironmentalOpen in IMG/M
3300031820Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300032770Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5EnvironmentalOpen in IMG/M
3300032783Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3EnvironmentalOpen in IMG/M
3300032805Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2EnvironmentalOpen in IMG/M
3300032829Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3EnvironmentalOpen in IMG/M
3300032892Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5EnvironmentalOpen in IMG/M
3300032893Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1EnvironmentalOpen in IMG/M
3300032954Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2EnvironmentalOpen in IMG/M
3300033134Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2EnvironmentalOpen in IMG/M
3300033158Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1EnvironmentalOpen in IMG/M
3300033405Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MYEnvironmentalOpen in IMG/M
3300033433Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MNEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12269J14319_1036944913300001356Peatlands SoilMFLFDFFRSFLPLHNPIGFGASDFLLLVFALMLAA
Ga0062591_10018286323300004643SoilMFLFQFFRSFLPLHNPIGFGASDFIELAFAVLLVFLVIARRPWLEPYAQRLP
Ga0070706_10147245823300005467Corn, Switchgrass And Miscanthus RhizosphereMFLFRFFSSFLPLRNPIGFGASDFIELALAVLLICLALASR
Ga0070741_1173960113300005529Surface SoilMAPFQLFRSFLPLHNPIGFGPPDWIELELAVLILLLL
Ga0070739_1013991033300005532Surface SoilVYLFDLFRSFLPLRNPIGFGIADFVVFAIALLLTVLFFARQAL
Ga0070733_1008765813300005541Surface SoilMFLFRLFRSFLPLHNPIGFGASDFIELAFAVLLVLLVLA
Ga0066700_1041130113300005559SoilMFLFQFFRSFLPLHNPIGFGASDFIELTFALLLVL
Ga0078972_113823123300005573Hot SpringMYLFHVLRSFLPLHNPIGFGASDFVEFSLAVLLLLLIVAR
Ga0068857_10152696413300005577Corn RhizosphereMPLSDLFRSFQPLHNPIGFGAADFIELLLALMMAGA
Ga0080026_1026519423300005952Permafrost SoilMFDLFRSFLPLHNPIGFGAADFIELELAILLVLLILAHSG
Ga0075029_10117106313300006052WatershedsMFLFDFFRSFLPLHNPIGFGAADFIELAFTVLLVVLGMMFRPWIEPYARRLAVN
Ga0070765_10042860713300006176SoilMFYLWHLFRSFQPLNNPIGFGASDFIELALAAILVSLTLARNHLAAAA
Ga0068871_10205932123300006358Miscanthus RhizosphereMFPVQLFRSFVPLQNPIGFGASDFIELAWAAMLVLLALAW
Ga0066659_1051360213300006797SoilMFLFHFFRSFLPLHNTIGFGAADFIELALAAVLVLFA
Ga0075426_1060463923300006903Populus RhizosphereMFLFQFFRSFLPLHNPIGFGASDFIELAFAVLLVFLVIARRPWLEPYRQGLAGKTG
Ga0066710_10186198533300009012Grasslands SoilVFLFGWFRSFLPLRNPIGFGASDFIELAVAVLLVLSVLARV
Ga0099829_1174584313300009038Vadose Zone SoilMFLFHFFRSFLPLHNPIGFGASDFIELAFAVLLVFLTIARRPWLEPYAQ
Ga0099829_1177125913300009038Vadose Zone SoilMFLFHFFRSFLPLHNPIGFGASDFIELAFAFLLLLLALARRPWIE
Ga0116117_114315113300009635PeatlandMFLFDFFRSFLPLHNPLGFGASDFVEFALIALLVAL
Ga0116113_117344613300009638PeatlandMFLFDFFRSFLPLHNPLGFGASDFVEFALIALLIALVLARGALDPA
Ga0116126_120324223300009640PeatlandMYLFHLFRSFLPLHNPIGFGASDFLELAAAALLVALVLGRAAI
Ga0116121_109233713300009644PeatlandMFLFDLFRSFLPLHNPIGFGAADFIEFALAAMLVLM
Ga0116106_110548613300009645PeatlandMFQLFRSFLPLHNPIGFGASDFIELELAALFLLLLA
Ga0116216_1066704813300009698Peatlands SoilMYLFHIFRSFLPLHNPIGFGAVDFMELGLALLLVLLVI
Ga0116130_118361813300009762PeatlandMYLFHVLRSFLPIHNPIGFGASDFIEFAVAVLLVLLVLARAWLEPAA
Ga0126373_1320419713300010048Tropical Forest SoilMVVSMFYLFDWFRSFLPMHNPIGFGAVDFIALGLGAALVL
Ga0126378_1347268123300010361Tropical Forest SoilMYLFHLLRSFLPLHNPIGFGAADFVELVLCAALVALALGRRWVKDAGS
Ga0134128_1144171413300010373Terrestrial SoilMFPFHLFRSFLPLHNPIGFGASDFIELALAAMTMA
Ga0126381_10363511013300010376Tropical Forest SoilMVVSMFYLFDWFRSFLPMHNPIGFGAVDFIALGLGAALVLF
Ga0136449_10139628323300010379Peatlands SoilMFTPDLFRSLLPLHNPLGFGAADFLLLALAILLVALLALWR
Ga0136449_10165655413300010379Peatlands SoilMFLFDFFRSFLPLHNLLGFGASDFVEFALVVLLVAL
Ga0137391_1007482943300011270Vadose Zone SoilMFLFDLFRSFLPLHNPIGFGAADFIELAFTVLLVVIAMMFR
Ga0137382_1120990523300012200Vadose Zone SoilMFLFQFFRSFLPLHNPIGFGASDFIELAFAVLLVFLV
Ga0164302_1135772113300012961SoilMFLFRLFQSFLPLHNPIGFGAGDFIEFGLAVLLVVG
Ga0126369_1148969123300012971Tropical Forest SoilMFLFHFFRSFLPLHNPIGFGGSDFIELAFGLLLVMLTIARRPWIEPYAQR
Ga0181539_104988953300014151BogMYLFHLFRSFLPLQNPIGFGVSDFIQLALTLLLLLPVM
Ga0181533_122891713300014152BogMFPSWVLRSYLPLRNPIGFGASDFVELAVVAMLVCLVMARAWM
Ga0181524_1019249113300014155BogMFLFDVFRSFLPLNNSIGFGPADFIELALAAMLVLM
Ga0181518_1039650813300014156BogMFLFDFFRSFLPLHNPLGFGASDFVEFAAVALLVAL
Ga0181521_1006547913300014158BogMFQLFRSFLPLHNPIGFGASDFIELELAALLVLLI
Ga0181530_1034790813300014159BogMYLFDLFRSFLPLHNPIGFGAADFIEFALAAMLVLMVAL
Ga0181538_1032882513300014162BogMFLFDFFRSFLPLHNPLGFGASDFVEFALIALLVALALARG
Ga0181538_1061178013300014162BogVFFFDIFRSFLPLQNPIGFSGADFIELTIAALLVVLVIL
Ga0181532_1002085213300014164BogVQFHIFSSFLPFENPLGFGASDFIELFLAATLGFL
Ga0181532_1051505513300014164BogMFLFDFFRSFLPLHNPIGFGAADFIEFALATLLVSLVLLRARVEPG
Ga0181532_1079750923300014164BogMYLFDLFRSFLPLHNPIGYGAADFIELALAALLLVFVLARGPIEPI
Ga0181523_1007396733300014165BogMFLFDVFRSFLPLHNPIGFGPADFIELALAAMLVLM
Ga0181523_1083710113300014165BogMYLFDLFRSFLPLHNPIGFGAGDFIELALAGLLAVLVL
Ga0181535_1039804223300014199BogMYLFDIFRSFLPLRNPIGFGVADFILMALALMLAAM
Ga0181526_1042288713300014200BogMFLFDFFRSFLPLHNPLGFGASDFVEFALIALLVALVLAR
Ga0182010_1080102513300014490FenMFLFDFFRSFLPLPNPIGFGASDFIELALAVRRVSL
Ga0182014_1027109413300014491BogMFLFDFFRSFLPLHNPIGFGAADFIELALATLLVSL
Ga0182011_1090420613300014496FenMFLFDFFRSFLPLHNPIGFGAGDFIEFALAALLVSLV
Ga0182021_1130124413300014502FenMFLFDFFRSFLPLHNPIGFGAVDFIEFALAAALLLMAAWRGRVET
Ga0181536_1053250823300014638BogMFLFDVFRSFLPLNNSIGFGPADFIELALAAMLVLMAL
Ga0181516_1031655943300014655BogMFLFDIFRSFLPLHNPLGFGASDFVEFALVALLVALVL
Ga0181519_1039997913300014658BogMFLFDFFRSFLPLHNPLGFGASDFVEFGAVALLVAL
Ga0181519_1061218913300014658BogMFLFDFFRSFLPLHNPLGFGASDFVEFAAVALLVALILAR
Ga0157376_1143271323300014969Miscanthus RhizosphereMFLFHIFRSFLPLHNPLGFGASDFIEFSVAVLMVLLLLTGRSLI
Ga0132256_10281341913300015372Arabidopsis RhizosphereMFLFRLFHSFLPLHNPIGFGASDFIELAVAAILVLLVLARHRIELFGRR
Ga0181509_120985043300016701PeatlandMFLFDLFRSFLPLHNPIGFGAADFMEFALAATATN
Ga0181505_1015972523300016750PeatlandMRALFHSLRPLYNPIGFGAADFIVLAWTGLLVLLLLA
Ga0181505_1061819313300016750PeatlandMFQLFRSFLPLHNPIGFGASDFIELELAALLVLLIALHAGLDR
Ga0187856_125454113300017925PeatlandMFLFDFFRSFLPLHNPIGFGAADFIELALAALLVSLVLLRARIEPGFQRL
Ga0187806_139179723300017928Freshwater SedimentMVLLELFRSFLPLRNPIGFGASDFLELALAALLVTLAL
Ga0187801_1047540923300017933Freshwater SedimentMFYLFHLFRSFQPLSNPIGFGAGDFIEFALAAVLVSLAIGRERLMAPVRSF
Ga0187821_1040871113300017936Freshwater SedimentMFPFHLFRSFLPLHNPIGFGASDFIELVLAAMLVLLVLAWR
Ga0187808_1025285813300017942Freshwater SedimentMYLFHVFRSFLPLQNPIGFGASDFIEFTLVFLLVLLVVGRAWAIPAAQKLA
Ga0187879_1035546413300017946PeatlandMYLFDLFRSFLPLHNPIGFGAVDFIELALAGLLIVFVLARRPI
Ga0181520_1103386223300017988BogMYLFDIFRSFLPLHNPIGFGAADFILLALALLLVAFILTKPWIE
Ga0187865_108499323300018004PeatlandMFLFDWFRSFLPMHNPLGFGASDFLELALVCLLILLM
Ga0187884_1039205723300018009PeatlandMFLFDVFRSFLPPHNSIGFGPADFIELALAAMLVL
Ga0187810_1040765013300018012Freshwater SedimentMFIFHLFRSLLPLRNPIGFGAADFIELSVALLLVLLLIWSRPL
Ga0187866_111814513300018015PeatlandMFLFDVFRSFLPLHNPIGFGPADFIELALAAMLVLMALVW
Ga0187867_1004402513300018033PeatlandMFDLFRSFLPLHNPIGFGATDFIELELAALLVLLIVAHAG
Ga0187875_1040754113300018035PeatlandMFLFQLFRSFLPLHNPIGFGSTDFLLLILAAMLLALTLAWR
Ga0187890_1069279523300018044PeatlandMFLFDIFRSFLPLHNPIGFGTADFIEFAAAAMLVLM
Ga0187851_1083614623300018046PeatlandMFLFDFFRSFLPLHNPLGFGASDFVEFGAVALLVALILARGVVEPAA
Ga0066667_1206366713300018433Grasslands SoilMFLFQFFRSFLPLHNPIGFGASDFIELAFAVLLVFLVIARRPWLE
Ga0182025_127256353300019786PermafrostMFLFDFFRSFLPLHNPIGFGASDFIELALAALLDC
Ga0213876_1050745323300021384Plant RootsMYLFHLFRSLLPVRNPIGFGASDFILIAVSVLFVFVTLLWPA
Ga0210394_1156510623300021420SoilMFLFQLFRSFLPLGNPIGFGASDFIELAVAALLALL
Ga0187846_1043755523300021476BiofilmMLQLFRSFLPLHNPIGFGATDFIELALVALLTGLILASCLEPR
Ga0210402_1189361123300021478SoilMFGFQLFRTFQPFQNPIGFGGSDFIELAFTVLLVIFA
Ga0126371_1075460123300021560Tropical Forest SoilMFLFDFFRSLLPLHNPIGFGSADFLELALAALLVLLLLARAELE
Ga0126371_1275728123300021560Tropical Forest SoilMFLFDFFRSFLPLRNPIGFGASDFILLTIGLLLVAAVVLWRR
Ga0224542_103880623300022516SoilMFLFDFFRSFLPLHNPIGFGAGDFIEFALAALLVSLVLLRARVE
Ga0224549_102089113300022840SoilMYLFHVLRSFLPIHNPIGFGASDFIEFAVAVLLVLLVLARA
Ga0224559_119574623300023091SoilMFLFDWFRSFLPLHNPLGFGAADFVELALSALGVALV
Ga0207660_1109886423300025917Corn RhizosphereMFPFHLFRSFMPLHNPIGFGASDFIELALAATLVLLALAWRPWIESF
Ga0207646_1122085013300025922Corn, Switchgrass And Miscanthus RhizosphereVFPFHLFRSFLPLHNPIGFGASDFIELALAAMLVLLALAWRPWIE
Ga0247845_103829033300026451SoilMFLFDFFRSFLPLHNPIGFGAGDFIEFALAALLVSLVLLRARVEPAFQ
Ga0209180_1068425923300027846Vadose Zone SoilMFLFHFFRSFLPLHNTIGFGAADFIELALAAVLVLFALIWRP
Ga0209274_1066865613300027853SoilMFPLHLFRSFLQLDNPMGFGASDFIELFLAALLLA
Ga0209167_1005718613300027867Surface SoilMFLFRLFRSFLPLHNPIGFGASDFIELAFAVLLVLLVLAWRP
Ga0209062_100417713300027965Surface SoilMFYLFDWFRSFLPLHNPIGFGVVDFIELGLGVMLVLFGL
Ga0302156_1011612233300028748BogMFLFDLFRSFLPLHNPIGFGSADFIEFALAAMLVLMV
Ga0302155_1045788723300028874BogMFLFDLFRSFLPLHNPIGFGSADFIEFALAAMLVLMVALHGREE
Ga0311369_1017930913300029910PalsaMYLFHVLRSFLPLHNPIGFGASDFIQFCLAVLLVSLVLARAWLQPV
Ga0311362_1106995913300029913BogVFLFDLFRSFLPLHNPLGFGAADFLEFALAAILVT
Ga0311358_1062667413300029915BogVFLFEIFRSFLPIHNPIGFGAADFIEFTLAVGLLA
Ga0311339_1193884323300029999PalsaMSFTPLHNPIGFGAIDFIELSVAGMMVALALLWRPYLA
Ga0302182_1041607323300030054PalsaMFLFDFFRSFLPLHNPIGFGASDFIELALAALLVLLTLMRAEAEP
Ga0302325_1058965613300031234PalsaMFLFRLFRSFLPFHNPIGFGADDFVELGLAALLVLLILF
Ga0302325_1093716633300031234PalsaMFLFDFFRSFLPLHNPIGFGASDFIELALAALLVLLTLVRAEAQ
Ga0302325_1178638713300031234PalsaVFLFEIFRSFLPIHNPIGFGAADFVELTFALGMMALALTWRP
Ga0302318_1070239113300031258BogVFLFEIFRSFLPIHNPIGFGAADFIEFTLAVGLLALALIW
Ga0302326_1303893923300031525PalsaMYVFHLFRSFLPLRNPIGFGAADFIELALALLLVAFALARP
Ga0318573_1040916013300031564SoilVFQSFLPLHNPLGFGAADFVELALALILLLLTMACRGWLE
Ga0265314_1036886013300031711RhizosphereMYLFDVFRSFLPLHNPIGFGAVDFVEVALAIALVALVLVRARL
Ga0318501_1063527223300031736SoilMYLFHVFRSFLPLHNPIGFGVNDFIQFALALLLVFLLL
Ga0307473_1100048713300031820Hardwood Forest SoilMLFSELFRSFVPLRNPIGFGASDFIELAFTLLLVVPALAWRPW
Ga0307472_10218202113300032205Hardwood Forest SoilMFLFDLFRSFLPLHNPIGFGAADFIELAFTVLLVVIAMMFRPWIEPYARRLSV
Ga0335085_1060000223300032770SoilMYLFQWFRSFLPLHNPIGFGASDFLELFLVLLLVVMVIARPWVIPAAQKLARKP
Ga0335085_1099791743300032770SoilMFLFRLFQSFLPLHNPIGFGAADFIELALAGLLVLL
Ga0335079_1031169323300032783SoilMYLFDIFRSFLPLHNPIGFGAVDFIELAIALLLVVLVLARERIEPFGLRLAQRPV
Ga0335079_1041521723300032783SoilMFGLFRSFLPLHNPIGFGASDFIELELAALLLLLIAVHH
Ga0335079_1230166823300032783SoilMFLFQLFRSFLPLHNPIGFGVSDFLEFALAALLTCLVLGHARIDPWIRRVA
Ga0335078_1042900213300032805SoilMFLFQLFRSFLPLHNPIGFGASDFIELELAALLVVLIVAYAGAVA
Ga0335078_1130650823300032805SoilVFLFDWFRSLLPLHNPIGFGAADFIELALAVLLVAAVLAR
Ga0335078_1182499623300032805SoilMFLFDWFRSLLPLHNPIGFGAADFIALALAVLLVLAV
Ga0335070_1191576823300032829SoilMYLFQWFRSFLPLHNPIGFGASDFLELFLVLLLVVMVIARPWVIPAAQKLARK
Ga0335081_1118499423300032892SoilMFLFDFFRSFLPLHNPIGFGASDFLLLAFAFLLAATAV
Ga0335081_1142344123300032892SoilMYLLHLFRSFLPLQNPIGFGAVDFIEFSFALLLVLLI
Ga0335081_1255843513300032892SoilMFLFDFFRSFLPLHNPIGFGVGDFLLLVLAVLLVTAAVVW
Ga0335069_1007855743300032893SoilMYLFDIFRSFLPLHNPIGFGAVDFIELAIALLLVVLVLARERIE
Ga0335069_1114866823300032893SoilMYLFHVFRSFLPLHNPLGFGASDFILFGFAFLLVAGVILRAW
Ga0335069_1174914413300032893SoilMYLFQWFRSFLPLHNPIGFGASDFLELFLLLLLVVMVIARP
Ga0335083_1070986023300032954SoilMYLFQWFRSFLPLHNPIGFGASDFLELVLVLLLVVM
Ga0335073_1166577713300033134SoilMSALFRSLRPLENPIGFGAADFIILAWAALLVLLWLAAARLEPGMRRLARR
Ga0335077_1007724053300033158SoilMFLFDFFRSFLPLHNPIGFGAADFIELALSLVLVLMT
Ga0335077_1032408823300033158SoilMFLLDLFRSFLPLHNPIGFGASDFILLALAAVLVLLALL
Ga0335077_1058777413300033158SoilMYLFDIFRSFLPLHNPIGFGATDFVQLALAILLAGVVLGRAWLAPAA
Ga0335077_1149079823300033158SoilMFYLFQLFRSFLPLHNPIGFGGPDFIELFLAVILVICALCRQRIVR
Ga0326727_1028666853300033405Peat SoilMFLFDFFRSFLPLHNPIGFGAGDFIEFALAALLVSLVLLRAR
Ga0326726_1132496523300033433Peat SoilMDFFQAFRSFLQLHNPIGFGAPDFLELAVAAMLVLLSL

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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