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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F057747 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 136 |
| Average Sequence Length | 43 residues |
| Representative Sequence | MNGWIIHKKSLGENHEVQRLVEEFEKQDIKIRVVNPQDVDIF |
| Number of Associated Samples | 105 |
| Number of Associated Scaffolds | 136 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 87.50 % |
| % of genes near scaffold ends (potentially truncated) | 100.00 % |
| % of genes from short scaffolds (< 2000 bps) | 90.44 % |
| Associated GOLD sequencing projects | 98 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.42 |
| Hidden Markov Model |
|---|
| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (55.882 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Aquatic → Marine → Strait → Unclassified → Seawater (27.206 % of family members) |
| Environment Ontology (ENVO) | Unclassified (84.559 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) (94.118 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 18.57% β-sheet: 11.43% Coil/Unstructured: 70.00% | Feature Viewer |
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| Powered by Feature Viewer | |||||
| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.42 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 136 Family Scaffolds |
|---|---|---|
| PF03851 | UvdE | 53.68 |
| PF05523 | FdtA | 3.68 |
| PF02511 | Thy1 | 2.21 |
| PF00908 | dTDP_sugar_isom | 2.21 |
| PF00313 | CSD | 1.47 |
| PF01583 | APS_kinase | 0.74 |
| COG ID | Name | Functional Category | % Frequency in 136 Family Scaffolds |
|---|---|---|---|
| COG4294 | UV DNA damage repair endonuclease | Replication, recombination and repair [L] | 53.68 |
| COG1351 | Thymidylate synthase ThyX, FAD-dependent family | Nucleotide transport and metabolism [F] | 2.21 |
| COG1898 | dTDP-4-dehydrorhamnose 3,5-epimerase or related enzyme | Cell wall/membrane/envelope biogenesis [M] | 2.21 |
| COG0529 | Adenylylsulfate kinase or related kinase | Inorganic ion transport and metabolism [P] | 0.74 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 55.88 % |
| All Organisms | root | All Organisms | 44.12 % |
| Visualization |
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| Powered by ApexCharts |
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| Habitat | Taxonomy | Distribution |
| Seawater | Environmental → Aquatic → Marine → Strait → Unclassified → Seawater | 27.21% |
| Marine | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine | 22.06% |
| Marine | Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine | 12.50% |
| Pelagic Marine | Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine | 7.35% |
| Aqueous | Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous | 5.88% |
| Pelagic Marine | Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine | 3.68% |
| Salt Marsh | Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh | 2.94% |
| Seawater | Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater | 2.94% |
| Marine | Environmental → Aquatic → Marine → Inlet → Unclassified → Marine | 2.21% |
| Pond Water | Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water | 2.21% |
| Surface Seawater | Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater | 1.47% |
| Freshwater To Marine Saline Gradient | Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient | 1.47% |
| Seawater | Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater | 1.47% |
| Seawater | Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater | 0.74% |
| Background Seawater | Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Background Seawater | 0.74% |
| Marine | Environmental → Aquatic → Marine → Coastal → Unclassified → Marine | 0.74% |
| Seawater | Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater | 0.74% |
| Sackhole Brine | Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine | 0.74% |
| Marine | Environmental → Aquatic → Marine → Coastal → Unclassified → Marine | 0.74% |
| Estuary Water | Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water | 0.74% |
| Estuarine | Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine | 0.74% |
| Marine Sediment | Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment | 0.74% |
| Visualization |
|---|
| Powered by ApexCharts |
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300001353 | Pelagic Microbial community sample from North Sea - COGITO 998_met_09 | Environmental | Open in IMG/M |
| 3300001355 | Pelagic Microbial community sample from North Sea - COGITO 998_met_08 | Environmental | Open in IMG/M |
| 3300001450 | Marine viral communities from the Pacific Ocean - LP-53 | Environmental | Open in IMG/M |
| 3300001460 | Marine viral communities from the Pacific Ocean - LP-28 | Environmental | Open in IMG/M |
| 3300001589 | Marine viral communities from the Pacific Ocean - LP-40 | Environmental | Open in IMG/M |
| 3300002482 | Marine viral communities from the Pacific Ocean - ETNP_2_30 | Environmental | Open in IMG/M |
| 3300004097 | Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaG | Environmental | Open in IMG/M |
| 3300005514 | Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV263 | Environmental | Open in IMG/M |
| 3300005523 | Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV265 | Environmental | Open in IMG/M |
| 3300006025 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA | Environmental | Open in IMG/M |
| 3300006027 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNA | Environmental | Open in IMG/M |
| 3300006753 | Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaG | Environmental | Open in IMG/M |
| 3300006789 | Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG | Environmental | Open in IMG/M |
| 3300006793 | Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG | Environmental | Open in IMG/M |
| 3300006802 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 | Environmental | Open in IMG/M |
| 3300006803 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_>0.8_DNA | Environmental | Open in IMG/M |
| 3300006921 | Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG | Environmental | Open in IMG/M |
| 3300006922 | Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaG | Environmental | Open in IMG/M |
| 3300006925 | Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaG | Environmental | Open in IMG/M |
| 3300006928 | Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaG | Environmental | Open in IMG/M |
| 3300006990 | Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG | Environmental | Open in IMG/M |
| 3300007758 | Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample CTDPlume_2015_DNA CLC_assembly | Environmental | Open in IMG/M |
| 3300007973 | Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460A_0.2um | Environmental | Open in IMG/M |
| 3300008012 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_<0.8_DNA | Environmental | Open in IMG/M |
| 3300008999 | Estuarine microbial communities from the Columbia River estuary - Flood tide non-ETM metaG S.545 | Environmental | Open in IMG/M |
| 3300009001 | Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MG | Environmental | Open in IMG/M |
| 3300009423 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_100423 | Environmental | Open in IMG/M |
| 3300009435 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413 | Environmental | Open in IMG/M |
| 3300009443 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_110421 | Environmental | Open in IMG/M |
| 3300009476 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_110407 | Environmental | Open in IMG/M |
| 3300009495 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 | Environmental | Open in IMG/M |
| 3300009705 | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128 | Environmental | Open in IMG/M |
| 3300009786 | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126 | Environmental | Open in IMG/M |
| 3300010149 | Marine viral communities from the Subarctic Pacific Ocean - 13B_ETSP_OMZ_AT15268_CsCl metaG | Environmental | Open in IMG/M |
| 3300010151 | Marine viral communities from the Subarctic Pacific Ocean - 22_ETSP_OMZ_AT15343 metaG | Environmental | Open in IMG/M |
| 3300010300 | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_DNA | Environmental | Open in IMG/M |
| 3300011258 | Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, permeate | Environmental | Open in IMG/M |
| 3300012920 | Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG | Environmental | Open in IMG/M |
| 3300012952 | Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 4 Metagenome | Environmental | Open in IMG/M |
| 3300013098 | Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay11, Core 4567-28, 0-3 cm | Environmental | Open in IMG/M |
| 3300014818 | Marine microbial communities to study oil droplet degradation from Trondheimsfjord, Norway - 0152 : 8 days incubation | Environmental | Open in IMG/M |
| 3300017697 | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2) | Environmental | Open in IMG/M |
| 3300017708 | Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG | Environmental | Open in IMG/M |
| 3300017714 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 35 SPOT_SRF_2012-08-15 | Environmental | Open in IMG/M |
| 3300017717 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 27 SPOT_SRF_2011-10-25 | Environmental | Open in IMG/M |
| 3300017719 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21 | Environmental | Open in IMG/M |
| 3300017720 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 6 SPOT_SRF_2009-12-23 | Environmental | Open in IMG/M |
| 3300017728 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 42 SPOT_SRF_2013-04-24 | Environmental | Open in IMG/M |
| 3300017732 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 38 SPOT_SRF_2012-12-11 | Environmental | Open in IMG/M |
| 3300017733 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 49 SPOT_SRF_2013-12-23 | Environmental | Open in IMG/M |
| 3300017737 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11 (version 2) | Environmental | Open in IMG/M |
| 3300017740 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 41 SPOT_SRF_2013-03-13 | Environmental | Open in IMG/M |
| 3300017741 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 44 SPOT_SRF_2013-06-19 | Environmental | Open in IMG/M |
| 3300017744 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 20 SPOT_SRF_2011-02-23 | Environmental | Open in IMG/M |
| 3300017746 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 12 SPOT_SRF_2010-06-29 | Environmental | Open in IMG/M |
| 3300017751 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21 (version 2) | Environmental | Open in IMG/M |
| 3300017755 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 34 SPOT_SRF_2012-07-09 | Environmental | Open in IMG/M |
| 3300017760 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 31 SPOT_SRF_2012-02-16 | Environmental | Open in IMG/M |
| 3300017762 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 45 SPOT_SRF_2013-07-18 | Environmental | Open in IMG/M |
| 3300017763 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 33 SPOT_SRF_2012-06-20 | Environmental | Open in IMG/M |
| 3300017764 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 8 SPOT_SRF_2010-02-11 | Environmental | Open in IMG/M |
| 3300017765 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 36 SPOT_SRF_2012-09-28 | Environmental | Open in IMG/M |
| 3300017767 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 29 SPOT_SRF_2011-12-20 | Environmental | Open in IMG/M |
| 3300017773 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 9 SPOT_SRF_2010-03-24 | Environmental | Open in IMG/M |
| 3300017779 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 18 SPOT_SRF_2010-12-16 | Environmental | Open in IMG/M |
| 3300017781 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 46 SPOT_SRF_2013-08-14 | Environmental | Open in IMG/M |
| 3300017786 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 47 SPOT_SRF_2013-09-18 | Environmental | Open in IMG/M |
| 3300017967 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300018049 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101408AT metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300018428 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101404AT metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300020165 | Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1 | Environmental | Open in IMG/M |
| 3300020169 | Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160419_1 | Environmental | Open in IMG/M |
| 3300020175 | Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160321_2 | Environmental | Open in IMG/M |
| 3300020184 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101409BT metaG (spades assembly) | Environmental | Open in IMG/M |
| 3300020246 | Marine microbial communities from Tara Oceans - TARA_B100000424 (ERX555934-ERR599105) | Environmental | Open in IMG/M |
| 3300020332 | Marine microbial communities from Tara Oceans - TARA_B100000029 (ERX555956-ERR598975) | Environmental | Open in IMG/M |
| 3300020377 | Marine microbial communities from Tara Oceans - TARA_B100000927 (ERX556007-ERR599065) | Environmental | Open in IMG/M |
| 3300020400 | Marine microbial communities from Tara Oceans - TARA_B100001115 (ERX555947-ERR598992) | Environmental | Open in IMG/M |
| 3300020416 | Marine microbial communities from Tara Oceans - TARA_B100001109 (ERX556137-ERR599039) | Environmental | Open in IMG/M |
| 3300020424 | Marine microbial communities from Tara Oceans - TARA_B100000242 (ERX556056-ERR599138) | Environmental | Open in IMG/M |
| 3300020430 | Marine microbial communities from Tara Oceans - TARA_B100000683 (ERX556126-ERR599160) | Environmental | Open in IMG/M |
| 3300020441 | Marine prokaryotic communities collected during Tara Oceans survey from station TARA_078 - TARA_B100000524 (ERX556088-ERR599006) | Environmental | Open in IMG/M |
| 3300020446 | Marine microbial communities from Tara Oceans - TARA_B100001287 (ERX556031-ERR598989) | Environmental | Open in IMG/M |
| 3300020457 | Marine microbial communities from Tara Oceans - TARA_B100001113 (ERX555941-ERR599014) | Environmental | Open in IMG/M |
| 3300020470 | Marine microbial communities from Tara Oceans - TARA_B100000287 (ERX555976-ERR599053) | Environmental | Open in IMG/M |
| 3300020478 | Marine microbial communities from Tara Oceans - TARA_B100000029 (ERX556025-ERR599111) | Environmental | Open in IMG/M |
| 3300021368 | Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO550 | Environmental | Open in IMG/M |
| 3300025098 | Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025101 | Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025128 | Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025168 | Marine viral communities from the Pacific Ocean - LP-53 (SPAdes) | Environmental | Open in IMG/M |
| 3300025632 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413 (SPAdes) | Environmental | Open in IMG/M |
| 3300025641 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_110506 (SPAdes) | Environmental | Open in IMG/M |
| 3300025696 | Pelagic Microbial community sample from North Sea - COGITO 998_met_02 (SPAdes) | Environmental | Open in IMG/M |
| 3300025830 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_110407 (SPAdes) | Environmental | Open in IMG/M |
| 3300025840 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_DNA (SPAdes) | Environmental | Open in IMG/M |
| 3300025869 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405 (SPAdes) | Environmental | Open in IMG/M |
| 3300025889 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes) | Environmental | Open in IMG/M |
| 3300026187 | Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MG (SPAdes) | Environmental | Open in IMG/M |
| 3300028196 | Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI112_10m | Environmental | Open in IMG/M |
| 3300029319 | Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516 | Environmental | Open in IMG/M |
| 3300029448 | Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082 | Environmental | Open in IMG/M |
| 3300031519 | Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2 | Environmental | Open in IMG/M |
| 3300031774 | Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 34915 | Environmental | Open in IMG/M |
| 3300032011 | Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 3416 | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
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| Protein ID | Sample Taxon ID | Habitat | Sequence |
| JGI20159J14440_102108943 | 3300001353 | Pelagic Marine | LNGWIIQKALSGENHEVQRLVEEFEKQDIKIRVVNPQDVDIFV |
| JGI20158J14315_101021022 | 3300001355 | Pelagic Marine | MNGWIIHKKSLGENHEVQRLVEEFEKQDIKIRVVNPQDVDIFVDRDDRK |
| JGI24006J15134_100975381 | 3300001450 | Marine | MNGWIIHKKSLGENHEVQRLVEEFEKQDIKIRVVNPQDVDIF |
| JGI24006J15134_101842712 | 3300001450 | Marine | MNGWIIHKKSLGENHEVQRLVEEFEKQDIKIRVVNPQDVDI |
| JGI24003J15210_101382763 | 3300001460 | Marine | MNGWIIHKKSLGENHEVQRLVEEFEKQDIKIRVVN |
| JGI24003J15210_101430431 | 3300001460 | Marine | MNGWIIHKKSIGENHEVQRLVEEFEKQDIKIRVVN |
| JGI24005J15628_101133823 | 3300001589 | Marine | MNGWIIHKKSLGENFEVQRLVEEFEKQDIKIRVVNPQDVDIFVDRDD |
| JGI25127J35165_11177573 | 3300002482 | Marine | LNGWIIHKKSLGENHEVSRLVEEFEKRDIKVRVVNPKDVDI |
| Ga0055584_1021948951 | 3300004097 | Pelagic Marine | LNGWIIHKKSLGENLEVQRLVEEFEKRDIKIRVVNPQDVDIFV |
| Ga0066866_102801523 | 3300005514 | Marine | MANLSGWIIHKKSLGENFEVDRLVEEFEKQGIDIRVVNPKEVDIFVDR |
| Ga0066865_101519842 | 3300005523 | Marine | MNGWIIHKKELGENHEVQRLVDEFESRGVKVRVVNPKDVDIF |
| Ga0075474_101835291 | 3300006025 | Aqueous | MSINGWIIHKKELGENHEVERLVEEFHKQHIKIRI |
| Ga0075462_102466771 | 3300006027 | Aqueous | MNGWIIHKKSLGENHEVQRLVEEFEKQDIKIRVVNPQDVD |
| Ga0075462_102664783 | 3300006027 | Aqueous | MANLTGWIIHKKELGENHEVQRLVDEFKKQGVDIRVVNPQDVD |
| Ga0098039_11649833 | 3300006753 | Marine | MANLSGWIIHKKELGENTEVQRLVEEFEKQDIDIRVVNPQD |
| Ga0098054_11122621 | 3300006789 | Marine | MANLSGWIIHKKSLGENFEVDRLVEEFEKQGIDIRVVNPKEVDIF |
| Ga0098055_11841821 | 3300006793 | Marine | MNGWIIHKKALGENLEVKRLVEEFEKRDIKIRVVNPQDVD |
| Ga0098055_12647501 | 3300006793 | Marine | LNGWIIHKKALGENHEVKRLVEEFEKQDIKIRVVNPQDVDIFVDR |
| Ga0098055_12979203 | 3300006793 | Marine | LNGWIIHKKALGENLEVKRLVEEFEKRDIKIRVVNPQ |
| Ga0070749_102935771 | 3300006802 | Aqueous | MSNINGWIIHKKELGENFEVSRLVDEFKKQDIKVR |
| Ga0075467_102124792 | 3300006803 | Aqueous | MNGWIIHKKELGENHEVQRLVDEFESRDVKVRVVNPQEVDIFVDRD |
| Ga0098060_12001191 | 3300006921 | Marine | MNGWIIHKKSLGENHEVQRLVDEFEKKDIKIRVVNP |
| Ga0098045_10054931 | 3300006922 | Marine | LNGWIIHKKALGENLEVKRLVEEFEKRDIKIRVVNPQDVDIF |
| Ga0098050_11111161 | 3300006925 | Marine | MNGWIIHKKALGENLEVKRLVEEFEKRDIKIRVVNPQD |
| Ga0098050_11337433 | 3300006925 | Marine | LNGWIIHKKALGENHEVKRLVEEFEKRDIKIRVVNPQDVDIFVDR |
| Ga0098041_11670573 | 3300006928 | Marine | LNGWIIHKKALGENHEVKRLVEEFEKQDIKIRVVNPQDVDIFVDRDDR |
| Ga0098046_10345733 | 3300006990 | Marine | MNGWIIHKKALGENLEVKRLVEEFEKRDIKIRVVN |
| Ga0105668_12352223 | 3300007758 | Background Seawater | MSMNGWIIHKQELGENFEVQRLVEEFEKQKVNIRVVNPQDVDIFVDR |
| Ga0105746_10566563 | 3300007973 | Estuary Water | LNGWIIHKKSLGENHEVQRLVEEFEKRDIKIRVVNPQDVDIFVDRDD |
| Ga0075480_101457023 | 3300008012 | Aqueous | MSINGWIIHKKELGENHEVERLVEEFNKQHIKVRVVNPQDVDIFV |
| Ga0102816_10313451 | 3300008999 | Estuarine | MNGWIIHKKSLGENHEVKRLVDEFEKRDIKIRVVNPQDVDIF |
| Ga0102963_10377125 | 3300009001 | Pond Water | MSNINGWIIHKKELGENFEVSRLVEEFKKQDIKVRVINPQDVDIFVDRDDKKSILVKGV |
| Ga0102963_12299272 | 3300009001 | Pond Water | MSNINGWIIHKKELGENFEVSRLVEEFKKQDIKVRVINPQDVDIFVDRDDKKSILVKGVP |
| Ga0115548_12222343 | 3300009423 | Pelagic Marine | LNGWIIQKALSGENHEVQRLVEEFEKQDIKIRVVNPQDVDIFVDRDD |
| Ga0115546_10150081 | 3300009435 | Pelagic Marine | LNGWIIQKKISSENHEVQRLVEEFEKQDIKIRVVN |
| Ga0115557_13534302 | 3300009443 | Pelagic Marine | MNGWIIHKKELGENHEVQRLVDEFESRDVKVRVVNPQEVDIFVDR |
| Ga0115555_12122993 | 3300009476 | Pelagic Marine | MNGWIIHKKSLGENHEVQRLVEEFEKQDIKIRVVNPQDVDIFVDR |
| Ga0115555_13788371 | 3300009476 | Pelagic Marine | MNGWIIHKKELGENHEVSRLVEEFEKQDIKIRVVNPQDVDIFVDR |
| Ga0115571_10904964 | 3300009495 | Pelagic Marine | MNGWIIHKKSLGENLEVQRLVDEFEKRDIKIRVVNPQDVDIFVDRDD |
| Ga0115000_102820622 | 3300009705 | Marine | MNGWIIQKAASGENHEVRRLVEEFEKQDIKIRVVNPQDVDIF |
| Ga0114999_104287891 | 3300009786 | Marine | MNGWIIHKKELGENHEVQRLVEEFEKQDIKIRVVNPQ |
| Ga0098049_11377543 | 3300010149 | Marine | MNGWIIHKKALGENLEVKRLVEEFEKRDIKIRVVNPQ |
| Ga0098061_10585331 | 3300010151 | Marine | MNGWIIHKKSLGENHEVQRLVDEFEKKDIKIRVVNPQDVDIFVDRDD |
| Ga0129351_10427181 | 3300010300 | Freshwater To Marine Saline Gradient | MSNINGWIIHKKELGENFEVSRLVDEFKKQDIKVRVINPQDVDIFVDRDDKKSILVKG |
| Ga0151677_10021061 | 3300011258 | Marine | LNGWIIHKKELGENHEVQRLVEEFEKRDIKVRVVNPQDVDI |
| Ga0160423_101746921 | 3300012920 | Surface Seawater | MNGWIIHKKELGENHEVQRLVDEFESRGVKVRVVNPKDVDI |
| Ga0160423_110090373 | 3300012920 | Surface Seawater | MANLTGWIIHKKELGENFEVQRLVDEFEKQGVDVRVVNPKDVDIFVDRDD |
| Ga0163180_110800532 | 3300012952 | Seawater | MNGWIIHKKSLGENHEVSRLVEEFEKQGVDIRVVNPK |
| Ga0164320_101212911 | 3300013098 | Marine Sediment | MANLSGWIIHKQELGENFEVERLVEEFEKQNVDIRVVNPKD |
| Ga0134300_10088971 | 3300014818 | Marine | LNGWIIQKALSGENHEVQRLVEEFEKQDIKIRVVNPQDVDI |
| Ga0180120_104416562 | 3300017697 | Freshwater To Marine Saline Gradient | MNGWIIQKALSGENHEVQRLVEEFEKQDIKIRVVNPQDVDIFVD |
| Ga0181369_10691243 | 3300017708 | Marine | LNGWIIHKKVLGENLEVKRLVEEFEKRDIKIRVVNPQDVDIFVDRDD |
| Ga0181412_10682963 | 3300017714 | Seawater | MNGWIIHKKSLGENHEVQRLVEEFEKRDIKIRVVNPQDVDIFVD |
| Ga0181404_10443911 | 3300017717 | Seawater | MNGWIIHKKSLGENLEVQRLVDKFEKRDNKIRVVN |
| Ga0181390_10715451 | 3300017719 | Seawater | MNGWIIHKKSLGENHEVQRLVEEFEKQDIKIRVVNPQDV |
| Ga0181383_10720153 | 3300017720 | Seawater | MNGWIIHKKSLGENFEVQRLVEEFEKQDIKIRVVNPQDVDIFVDR |
| Ga0181419_10334681 | 3300017728 | Seawater | LNGWIIHKKSLGENHEVQRLVEEFEKRDIKIRVVNPQDVDI |
| Ga0181419_10616671 | 3300017728 | Seawater | MNGWIIHKKSIGENHEVQRLVEEFEKQDIKIRVVNPQDVDIFVDRDDRK |
| Ga0181419_10769251 | 3300017728 | Seawater | MNGWIIHKKSLGENHEVQRLVEEFEKRDIKIRVVNPQDVDI |
| Ga0181419_11367251 | 3300017728 | Seawater | MNGWIIHKKSLGENLEVSRLVEEFEKQGVDIRVVNPQD |
| Ga0181419_11418901 | 3300017728 | Seawater | MNGWIIHKKSLGENHEVQRLVEEFEKQDIKIRVVNPQDVDIFV |
| Ga0181415_11215493 | 3300017732 | Seawater | LNGWIIHKKSLGENHEVQRLVEEFNKQDIKIRVVNPQDVDIFVDRDDRK |
| Ga0181426_10562913 | 3300017733 | Seawater | MNGWIIQKALSGENHEVQRLVEEFEKQDIKIRVVNPQDVD |
| Ga0187218_10470443 | 3300017737 | Seawater | MNGWIIHKKSLGENLEVQRLVDEFEKRDIKIRVVNPQDVD |
| Ga0187218_10615401 | 3300017737 | Seawater | MNGWIIQKALSGENHEVQRLVEEFEKQDIKIRVVNPQDVDIFV |
| Ga0181418_10529861 | 3300017740 | Seawater | LNGWIIQKAASGENHEVQRLVEEFEKQDIKIRVVNPQDVD |
| Ga0181418_11240761 | 3300017740 | Seawater | MNGWIIQKALSGENHEVQRLVEEFEKQDIKIRVVNPQDVDIFVDRDDRK |
| Ga0181421_11839141 | 3300017741 | Seawater | LNGWIIHKKSIGENHEVKRLVEEFEKQDIKIRVVNPQDVDIF |
| Ga0181397_10811991 | 3300017744 | Seawater | MNGWIIQKALSGENHEVQRLVEEFEKQDIKIRVVN |
| Ga0181389_10091229 | 3300017746 | Seawater | LNGWIIQKAASGENHEVQRLVEEFEKQDIKIRVVNPQDVDIFVDRDDR |
| Ga0181389_11477373 | 3300017746 | Seawater | LNGWIIHKKSIGENHEVKRLVDEFEKQDIKIRVVNPQDVD |
| Ga0181389_11907941 | 3300017746 | Seawater | MNGWIIHKKSLGENLEVQRLVDEFEKRDIKIRVVN |
| Ga0187219_10974643 | 3300017751 | Seawater | MNGWIIQKALSGENHEVQRLVEDFEKQDIKVRVVKPQDV |
| Ga0181411_11276103 | 3300017755 | Seawater | MNGWIIHKKTLGENFEVDRLVEEFEKQGVDIRVVNPKDVDIFVDRD |
| Ga0181408_10209071 | 3300017760 | Seawater | LNGWIIHKKALGENHEVKRLVEEFEKQDIKIRVVNPQDVDIFVDRDD |
| Ga0181422_11382423 | 3300017762 | Seawater | MNGWIIHKKTLGENFEVDRLVEEFEKQGVDIRVVNPKDVDIFVDRDDRK |
| Ga0181410_11008562 | 3300017763 | Seawater | MNGWIIHKKSLGENHEVQRLVEEFEKQDIKIRVVNPQDVDIFVDRDD |
| Ga0181410_11652412 | 3300017763 | Seawater | MNGWIIQKALSGENHEVQRLVEEFEKQDIKIRVVNPQDVDIFVDR |
| Ga0181410_11693632 | 3300017763 | Seawater | MNGWIIHKKSLGENHEVQRLVEEFEKRDIKIRVVNPQ |
| Ga0181410_12081532 | 3300017763 | Seawater | MNGWIIHKKSLEEKLEVSRLVEEFEKQGVDIRVVNPQ |
| Ga0181385_11821001 | 3300017764 | Seawater | LNGWIIHKKQLGENHEVKRLVEEFEKQDIKVRVVNPQDVDIFVDRDD |
| Ga0181413_11275153 | 3300017765 | Seawater | LNGWIIHKKSLGENHEVQRLVEEFEKQDIKIRVVNTQDVDIFVDRDDR |
| Ga0181413_11428463 | 3300017765 | Seawater | MNGWIIHKKSLGENFEVDRLVEEFEKQGVDIRVVNPKDVD |
| Ga0181413_11550573 | 3300017765 | Seawater | MNGWIIHKKSLGENHEVQRLVEEFEKQDIKIRVVNPQ |
| Ga0181406_10743153 | 3300017767 | Seawater | MNGWIIHKKSLGENFEVQRLVEEFEKQDIKIRVVNPQDVDIFVDRD |
| Ga0181386_10574561 | 3300017773 | Seawater | MNGWIIHKKSLGENLEVQRLVDEFEKRDIKIRVVNPQDVDIFVDRD |
| Ga0181395_12143343 | 3300017779 | Seawater | MNGWIIHKKQLGENHEVQRLVEEFEKRDIKIRVVNPQDVDIFVDRDD |
| Ga0181423_13874743 | 3300017781 | Seawater | LNGWIIHKKSLGENHEVQRLVEEFEKRDIKIRVVNPQ |
| Ga0181424_104744261 | 3300017786 | Seawater | MNGWIIHKKELGENLEVSRLVEEFEKRDIKIRVVNPQDVDIFVDRDD |
| Ga0181590_108803652 | 3300017967 | Salt Marsh | MSNINGWIIHKKELGENFEVSRLVDEFKKQDIKVRVINPQDVDIFVDRDDKKSILVKGVP |
| Ga0181572_107062211 | 3300018049 | Salt Marsh | MSNMNGWIIHKKELGENHEVERLVEEFNKQHIKVRV |
| Ga0181568_108463242 | 3300018428 | Salt Marsh | MSNINGWIIHKKELGENFEVSRLVDEFKKQDIKVRVINPQDVDIFVDRD |
| Ga0206125_100896471 | 3300020165 | Seawater | MNGWIIHKKSLGENHEVQRLVEEFEKQDIKIRVVNPQD |
| Ga0206125_103402201 | 3300020165 | Seawater | MNGWIIHKKSLGENHEVQRLVEEFEKRDIKIRVVNPQD |
| Ga0206127_10274851 | 3300020169 | Seawater | LNGWIIQKALSGENHEVQRLVEEFEKQDIKIRVVNP |
| Ga0206124_102079753 | 3300020175 | Seawater | MNGWIIHKKELGENHEVSRLVEEFEKQDIKIRVVNPQDVDIFVDRDDRK |
| Ga0181573_1004948010 | 3300020184 | Salt Marsh | MANLTGWIIHKKELGENHEVQRLVDEFEKQGVKIRVVNP |
| Ga0211707_10254621 | 3300020246 | Marine | MNGWIIHKKALGENHEVKRLVEEFEKKDVKVRVVNPQDVDIFVDRDDR |
| Ga0211502_11087183 | 3300020332 | Marine | MANLSGWIIHKKQLGVNFEVDRLVEEFEKQGVDIR |
| Ga0211647_101747851 | 3300020377 | Marine | MNGWIIHKKALGENHEVKRLVEEFEKRDIKIRVVNPQDVDIIVDR |
| Ga0211636_100551631 | 3300020400 | Marine | MNGWIIHKKALGENHEVKRLVEEFEKRDIKIRVVNPQ |
| Ga0211636_102699701 | 3300020400 | Marine | MNGWIIHKKQLGENHEVKRLVEEFEKRDIKVRVVNPKDV |
| Ga0211644_104412932 | 3300020416 | Marine | MNGWIIHKKALGENHEVKRLVEEFEKRDIKIRVVNPQDVDIF |
| Ga0211620_102641222 | 3300020424 | Marine | MNGWIIHKKQLGENHEVQRLVEEFEKRDVKVRVVNPKDVDIIV |
| Ga0211622_101361342 | 3300020430 | Marine | MNGWIIHKKALGENHEVKRLVEEFEKRDIKIRVVNPQD |
| Ga0211695_101895331 | 3300020441 | Marine | MANLTGWIIHKKELGENFEVSRLVEEFEKQGVDVRVVNPKDVDIFVDR |
| Ga0211574_105028471 | 3300020446 | Marine | MANLTGWIIHKKELGENHEVKRLVDEFEKQGVDVRVVNPKDVDIFVD |
| Ga0211643_103209403 | 3300020457 | Marine | MANLSGWIIHKKQLGENFEVKRLVEEFKKQGVDIRVVNPKEVDIFVDRDDRK |
| Ga0211543_100196915 | 3300020470 | Marine | MNGWILHKKELGEIYETDRIVEEFELQGINVRVVNPQDVDIFVDRDDRQ |
| Ga0211543_102957591 | 3300020470 | Marine | MTGWILYKKDISESYETQRLVEEFEKQDIKIHVVNPQDVDILVDR |
| Ga0211503_100879811 | 3300020478 | Marine | MNGWILHKKELGEVYETDTLVEEFEKQGIKVRVVNPQDVDIFVD |
| Ga0213860_103568521 | 3300021368 | Seawater | MNGWIIHKKQLGENLEVSRLVEEFEKRDVKVRVVNPKD |
| Ga0208434_10085111 | 3300025098 | Marine | LNGWIIHKKALGENLEVKRLVEEFEKRDIKIRVVNPQDVDI |
| Ga0208159_10019041 | 3300025101 | Marine | MNGWIIHKKQLGENHEVKRLVEEFEKQDIKIRVVNPKDVDIFV |
| Ga0208159_10218541 | 3300025101 | Marine | LNGWIIHKKVLGENLEVKRLVEEFEKRDIKIRVVNPQDVDIFVDRDDR |
| Ga0208919_10796151 | 3300025128 | Marine | LNGWIIHKKVLGENLEVKRLVEEFEKRDIKIRVVNPQ |
| Ga0208919_11359823 | 3300025128 | Marine | LNGWIIHKKALGENLEVKRLVEEFEKRDIKIRVVNPQDVD |
| Ga0209337_13206942 | 3300025168 | Marine | MNGWIIQKKISGENHEVQRLVEEFEKQDIKIRVVNPQDVDIFVDR |
| Ga0209194_10411841 | 3300025632 | Pelagic Marine | LNGWIIQKKLSGENHEVQRLVEEFEKQDIKIRVVNPQDVD |
| Ga0209833_11366461 | 3300025641 | Pelagic Marine | MNGWIIHKKQLGENHEVDRLVEEFEKQDIKVRVVNPQDVDIFVD |
| Ga0209532_10776291 | 3300025696 | Pelagic Marine | LNGWIIQKALSGENHEVQRLVEEFEKQDIKIRVVNPQDVDIFVDRDDR |
| Ga0209532_11353021 | 3300025696 | Pelagic Marine | LNGWIIHKKSLGENHEVQRLVEEFEKQDIKIRVVNPQDVDIFVDRDDR |
| Ga0209832_12136212 | 3300025830 | Pelagic Marine | MNGWIIHKKELGENHEVSRLVEEFEKQDIKIRVVN |
| Ga0208917_11592372 | 3300025840 | Aqueous | MSINGWIIHKKELGENHEVERLVEEFHKQHIKVRVVNPQ |
| Ga0209308_103777231 | 3300025869 | Pelagic Marine | LNGWIIHKKALGENHEVKRLVEEFEKRDIKIRVVNPQDVDIFVDRD |
| Ga0208644_12720412 | 3300025889 | Aqueous | MSINGWIIHKKELGENHEVERLVEEFHKQHIKVRV |
| Ga0209929_10880713 | 3300026187 | Pond Water | MNGWIIHKKELGENHEVQRLVDEFKKQGVDIRVVNPKDVD |
| Ga0257114_10322841 | 3300028196 | Marine | LNGWIIHKKSLGENHEVQRLVEEFEKRDIKIRVVNPQDVDIFVDRDDRKS |
| Ga0257114_11208301 | 3300028196 | Marine | LNGWIIHKKELGENHEVARLVEEFEKRDIKIRVVNPQDVDIF |
| Ga0257114_11508873 | 3300028196 | Marine | MNGWIIHKKELGENHEVARLVEEFEKRDIKIRVVNPQDVDIF |
| Ga0183748_10647171 | 3300029319 | Marine | MANLSGWIIHKKQLGENFEVQRLVEEFEKQGVDIRV |
| Ga0183755_10853333 | 3300029448 | Marine | MANLTGWIIHKKELGENHEVQRLVDEFEKQGVDVRVVNPKDVDIFVDRDDR |
| Ga0183755_10936863 | 3300029448 | Marine | LNGWIIHKKALGENHEVKRLVEEFEKRDIKIRVVNPQDVDIF |
| Ga0307488_103674521 | 3300031519 | Sackhole Brine | MNGWIIHKKSIGENHEVQRLVEEFEKQDIKIRVVNPQDVDIFVDRD |
| Ga0315331_100927386 | 3300031774 | Seawater | MNGWIIHKKSLGENHEVQRLVEEFEKRDIKIRVVNPQDVDIFVDRDD |
| Ga0315316_110963542 | 3300032011 | Seawater | MNGWILHKKELGEIYETDKLVEEFELQGINIRIVNPQDVDIFVDRDDRTSILVKG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |